>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.

Probab=100.00 E-value=0 Score=297.32 Aligned_cols=300 Identities=22% Similarity=0.230 Sum_probs=208.7 Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE Q ss_conf 75199998977799999999986995999967887756875010078774777789789998664323200232221133 Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDLV 84 (321) Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~V 84 (321) T Consensus 151 GkkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL-~---YGIPnmKL--dK~e~v~RRi~~l~aEG~~Fvtnte 224 (517) T TIGR01317 151 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLL-R---YGIPNMKL--DKEEIVDRRIDLLEAEGVDFVTNTE 224 (517) T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-C---CCCCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 8668997567579999999853588389974367888630-2---48887433--7388999999998747842017830 Q ss_pred EE-CCCCCCC-----CCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEEECCCCCC-------------C-C--- Q ss_conf 20-1122222-----22222222222100001477664-2024652774332021012111-------------1-1--- Q gi|254780283|r 85 VS-VDLDRHP-----FLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGFGVSACAT-------------C-D--- 140 (321) Q Consensus 85 ~~-i~~~~~~-----~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~v~~~~~-------------~-d--- 140 (321) T Consensus 225 iGdWdenskitnlsk~di~-~~~L~~~fDAVVLa~Ga~~pRDLpI~GREL---~GiH~AMefL~~~tk~~l~~~~k~~~G 300 (517) T TIGR01317 225 IGDWDENSKITNLSKKDIS-ADELKEDFDAVVLATGATKPRDLPIPGREL---KGIHFAMEFLTLNTKALLDDDFKDKDG 300 (517) T ss_pred CCCCCCCCCEECCCCCCCC-HHHHHHHCCEEEEECCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 0465344420002234268-799871469389833788601035577664---660378655467548560885366678 Q ss_pred --CCCCCCCCEEEEECCCCCCCCEEEEEC-CCCCCCCCCCCCCCCC--------CCC--------CCCCCCCCCCC-CCC Q ss_conf --111122100001025565431012101-3332223443433221--------111--------21122355443-322 Q gi|254780283|r 141 --GFFYKNKDVIVVGGGNTAAEEALHLAK-IARRVTIVHRRSSLRS--------EKI--------LQEKLFLQSNI-DFL 200 (321) Q Consensus 141 --~~~~~~k~v~ViGgG~~g~e~A~~L~~-~~~~Vtli~r~~~l~~--------~~~--------~~~~~~~~~~i-~~~ 200 (321) T Consensus 301 qP~I~akGK~VvvIGGGDTG~DCvGTs~RhGA~sV~qFE~mP~PP~~Ra~~npWP~wP~v~r~~y~hEE~~a~~GrDpRe 380 (517) T TIGR01317 301 QPFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEERAKDNPWPEWPKVYRVDYAHEEVKAKYGRDPRE 380 (517) T ss_pred CCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHH T ss_conf 87354228678997578756224563235543552302568887767727864865751133026689898517956012 Q ss_pred CCCCEEECCCCCCCCCCCCCCCCEEEC---------CCCCCCCCCCCCCCCCCCCCCC-CCHH-HHHC-CCCEECCCCEE Q ss_conf 223112114864333444443331420---------3210000011222211123223-5656-7742-56180699799 Q gi|254780283|r 201 FDTEVVDVIGSIPEPPLFPSVSGVRLH---------NKKEGNFFERNVDGIFIAIGYK-PNTK-IFRH-QLKMTNTNYIW 268 (321) Q Consensus 201 ~~~~v~~i~g~~~~~~~~~~~~~v~~~---------~~~~g~~~~i~~D~vi~a~G~~-pn~~-~~~~-~~~~~~~g~i~ 268 (321) T Consensus 381 y~i~t~~f~G~d~G~V~a~rTv~V~~~K~~~Gk~~~~e~pGsE~~~~AdLVLLAmGFvGPE~~GlL~~~gV~k~~RG~i~ 460 (517) T TIGR01317 381 YSIATKEFVGDDEGKVKAVRTVRVEMKKDEDGKYEFVEVPGSEEVFEADLVLLAMGFVGPEQAGLLDDFGVDKDERGNIK 460 (517) T ss_pred HHCCCEEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHEEEEECCCCCCCCCCCHHHHCCCCCCCCCEE T ss_conf 31001335676884487888899999877898288886079752011012332026757642003144444437787466 Q ss_pred EECCCCC---CCCCC--EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 0088855---47898--28970126884456789999799999999999974 Q gi|254780283|r 269 TMPDSTA---TSIPG--IFAAGDVADERYRQAITAAAMGCMAALEVEHYLSI 315 (321) Q Consensus 269 ~~~~~~~---Ts~p~--Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~ 315 (321) T Consensus 461 A~~~~~~GylTSipGGkVFAAGD~R-RGQSLiVWAI~EGR~aA~aVD~yLMG 511 (517) T TIGR01317 461 AGYDDYEGYLTSIPGGKVFAAGDCR-RGQSLIVWAINEGRKAARAVDRYLMG 511 (517) T ss_pred ECCCCCCCEEEECCCCCEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 3236777658871897268762489-88037788888878999986032068

HHsearch alignment for GI: 254780283 and conserved domain: TIGR01317