HHsearch alignment for GI: 254780283 and conserved domain: TIGR01317
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.77 E-value=1.2e-09 Score=74.86 Aligned_cols=104 Identities=21% Similarity=0.360 Sum_probs=70.2
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC-----------CCCCC-CCC-C--CCCCCCCCCCCCCCEEEC
Q ss_conf 12210000102556543101210133322234434332-----------21111-211-2--235544332222311211
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL-----------RSEKI-LQE-K--LFLQSNIDFLFDTEVVDV 208 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l-----------~~~~~-~~~-~--~~~~~~i~~~~~~~v~~i 208 (321)
T Consensus 149 rTGkkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~~FvtnteiGd- 227 (517)
T TIGR01317 149 RTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGVDFVTNTEIGD- 227 (517)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-
T ss_conf 4786689975675799999998535883899743678886302488874337388999999998747842017830046-
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 48643334444433314203210000011222211123223565677
Q gi|254780283|r 209 IGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF 255 (321)
Q Consensus 209 ~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~ 255 (321)
T Consensus 228 ---Wde---nskitnlsk~di~~-~~L~~~fDAVVLa~Ga~~pRDLp 267 (517)
T TIGR01317 228 ---WDE---NSKITNLSKKDISA-DELKEDFDAVVLATGATKPRDLP 267 (517)
T ss_pred ---CCC---CCCEECCCCCCCCH-HHHHHHCCEEEEECCCCCCCCCC
T ss_conf ---534---44200022342687-99871469389833788601035