HHsearch alignment for GI: 254780283 and conserved domain: TIGR01350
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=100.00 E-value=0 Score=356.83 Aligned_cols=291 Identities=23% Similarity=0.352 Sum_probs=215.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC------
Q ss_conf 75199998977799999999986995999967887756875010078774777789789998664323200232------
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTK------ 78 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~------ 78 (321)
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lGGtCLN~GCIPt----KaLL~~ae~~~~~~h~a~~~Gi~~~~~v~ 76 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLGGTCLNVGCIPT----KALLHSAEVYDEIKHKAKDLGIEVENNVS 76 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCC----HHHHHHHHHHHHHHHHHHHCCEEECCEEE
T ss_conf 95189987787727999999864980899980356874872776754----78877667899999889867803367126
Q ss_pred -------------------------------CCCEEEEECCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCEEEEECC
Q ss_conf -------------------------------22113320112222222222222---22210000147766420246527
Q gi|254780283|r 79 -------------------------------IIQDLVVSVDLDRHPFLVETQSG---DLWHADAVVIATGSEVKWLRLES 124 (321)
Q Consensus 79 -------------------------------~~~~~V~~i~~~~~~~~v~~~~g---~~~~a~~lIiAtG~~~~~~~ipG 124 (321)
T Consensus 77 ~d~~~~~~rK~~VV~~L~~Gv~~LlkknKv~v~~G~a~--~~~~~~v~V~~~~~~~~~~~~~k~~iiATGS~P~~lp~~g 154 (481)
T TIGR01350 77 VDWEKMQERKNKVVKKLVGGVKGLLKKNKVTVIKGEAK--FLDPNTVSVTGENGEEEETLEAKNIIIATGSRPRELPGPG 154 (481)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE--EECCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCC
T ss_conf 75899999988987542467898863068059999999--9858589983565531147874037993386034357778
Q ss_pred -CCCCCEE-ECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC------CCCCCCCCCCCCC
Q ss_conf -7433202-1012111111111221000010255654310121013332223443433221------1112112235544
Q gi|254780283|r 125 -EKKFQGF-GVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS------EKILQEKLFLQSN 196 (321)
Q Consensus 125 -~~~~~~~-~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~------~~~~~~~~~~~~~ 196 (321)
T Consensus 155 ~~~~~~~~G~v~~S~~al~l~~~P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp~~D~evSk~~~~~-L~~~G 233 (481)
T TIGR01350 155 GFDEDGKDGVVITSTGALSLKEVPESLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRILPGEDAEVSKVVKKK-LKKKG 233 (481)
T ss_pred CCCCCCCCCEEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH-HHHCC
T ss_conf 65767788789832687432248856699878667788999998539808999457500354316899999999-97449
Q ss_pred -CCCCCCCCEE--ECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHC-CCCEECCCCEEEE
Q ss_conf -3322223112--11486433344444333142032100000112222111232235656--7742-5618069979900
Q gi|254780283|r 197 -IDFLFDTEVV--DVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTK--IFRH-QLKMTNTNYIWTM 270 (321)
Q Consensus 197 -i~~~~~~~v~--~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~--~~~~-~~~~~~~g~i~~~ 270 (321)
T Consensus 234 Nv~i~~~~~V~~~~~~~~~~~v------~-~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~~Gv~~~~rG~i~-v 305 (481)
T TIGR01350 234 NVKILTNAKVTGAAVEKNDDQV------V-VEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEKLGVKLDERGRIV-V 305 (481)
T ss_pred CEEEECCCEEECCEEEECCCEE------E-EEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEE-E
T ss_conf 8498548544233577528789------9-999987998058898739999842434767646021211887898188-7
Q ss_pred CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88855478982897012688445678999979999999999
Q gi|254780283|r 271 PDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 271 ~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 311 (321)
T Consensus 306 d~~~~Tnv~~IYAIGDv~gg~-mLAH~A~~eG~vAAe~iaG 345 (481)
T TIGR01350 306 DEYMRTNVPGIYAIGDVIGGP-MLAHVASHEGIVAAENIAG 345 (481)
T ss_pred CCEEEECCCCEEEEEECCCCC-HHHHHHHHHHHHHHHHHHC
T ss_conf 983251689666887347870-2689999878999999818