HHsearch alignment for GI: 254780283 and conserved domain: TIGR01350

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=100.00  E-value=0  Score=356.83  Aligned_cols=291  Identities=23%  Similarity=0.352  Sum_probs=215.8

Q ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC------
Q ss_conf             75199998977799999999986995999967887756875010078774777789789998664323200232------
Q gi|254780283|r    5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTK------   78 (321)
Q Consensus         5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~------   78 (321)
T Consensus         1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lGGtCLN~GCIPt----KaLL~~ae~~~~~~h~a~~~Gi~~~~~v~   76 (481)
T TIGR01350         1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLGGTCLNVGCIPT----KALLHSAEVYDEIKHKAKDLGIEVENNVS   76 (481)
T ss_pred             CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCC----HHHHHHHHHHHHHHHHHHHCCEEECCEEE
T ss_conf             95189987787727999999864980899980356874872776754----78877667899999889867803367126


Q ss_pred             -------------------------------CCCEEEEECCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCEEEEECC
Q ss_conf             -------------------------------22113320112222222222222---22210000147766420246527
Q gi|254780283|r   79 -------------------------------IIQDLVVSVDLDRHPFLVETQSG---DLWHADAVVIATGSEVKWLRLES  124 (321)
Q Consensus        79 -------------------------------~~~~~V~~i~~~~~~~~v~~~~g---~~~~a~~lIiAtG~~~~~~~ipG  124 (321)
T Consensus        77 ~d~~~~~~rK~~VV~~L~~Gv~~LlkknKv~v~~G~a~--~~~~~~v~V~~~~~~~~~~~~~k~~iiATGS~P~~lp~~g  154 (481)
T TIGR01350        77 VDWEKMQERKNKVVKKLVGGVKGLLKKNKVTVIKGEAK--FLDPNTVSVTGENGEEEETLEAKNIIIATGSRPRELPGPG  154 (481)
T ss_pred             ECHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE--EECCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCC
T ss_conf             75899999988987542467898863068059999999--9858589983565531147874037993386034357778


Q ss_pred             -CCCCCEE-ECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC------CCCCCCCCCCCCC
Q ss_conf             -7433202-1012111111111221000010255654310121013332223443433221------1112112235544
Q gi|254780283|r  125 -EKKFQGF-GVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS------EKILQEKLFLQSN  196 (321)
Q Consensus       125 -~~~~~~~-~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~------~~~~~~~~~~~~~  196 (321)
T Consensus       155 ~~~~~~~~G~v~~S~~al~l~~~P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp~~D~evSk~~~~~-L~~~G  233 (481)
T TIGR01350       155 GFDEDGKDGVVITSTGALSLKEVPESLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRILPGEDAEVSKVVKKK-LKKKG  233 (481)
T ss_pred             CCCCCCCCCEEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH-HHHCC
T ss_conf             65767788789832687432248856699878667788999998539808999457500354316899999999-97449


Q ss_pred             -CCCCCCCCEE--ECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHC-CCCEECCCCEEEE
Q ss_conf             -3322223112--11486433344444333142032100000112222111232235656--7742-5618069979900
Q gi|254780283|r  197 -IDFLFDTEVV--DVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTK--IFRH-QLKMTNTNYIWTM  270 (321)
Q Consensus       197 -i~~~~~~~v~--~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~--~~~~-~~~~~~~g~i~~~  270 (321)
T Consensus       234 Nv~i~~~~~V~~~~~~~~~~~v------~-~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~~Gv~~~~rG~i~-v  305 (481)
T TIGR01350       234 NVKILTNAKVTGAAVEKNDDQV------V-VEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEKLGVKLDERGRIV-V  305 (481)
T ss_pred             CEEEECCCEEECCEEEECCCEE------E-EEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEE-E
T ss_conf             8498548544233577528789------9-999987998058898739999842434767646021211887898188-7


Q ss_pred             CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             88855478982897012688445678999979999999999
Q gi|254780283|r  271 PDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEH  311 (321)
Q Consensus       271 ~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~  311 (321)
T Consensus       306 d~~~~Tnv~~IYAIGDv~gg~-mLAH~A~~eG~vAAe~iaG  345 (481)
T TIGR01350       306 DEYMRTNVPGIYAIGDVIGGP-MLAHVASHEGIVAAENIAG  345 (481)
T ss_pred             CCEEEECCCCEEEEEECCCCC-HHHHHHHHHHHHHHHHHHC
T ss_conf             983251689666887347870-2689999878999999818