>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.

Probab=99.13 E-value=9.9e-11 Score=81.24 Aligned_cols=109 Identities=28% Similarity=0.413 Sum_probs=74.2 Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC-CCCE--------EE---EEC---CCCC-CC---------------- Q ss_conf 1999989777999999999869-9599996788-7756--------87---501---0078-77---------------- Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAM-LKPVIIAGSD-LGGQ--------LM---ITE---SIEN-YP---------------- 53 (321) Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g-~~v~iie~~~-~GG~--------l~---~~~---~i~n-~~---------------- 53 (321) T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~n~ 80 (487) T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGIND 80 (487) T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCC T ss_conf 96898427688999999986468763787057523226899772102356848885488899677889988863278887 Q ss_pred ----------------------------------C-------CCCC--CCHHHHHHHHHHHHHHCC------CCCCCE-E Q ss_conf ----------------------------------4-------7777--897899986643232002------322211-3 Q gi|254780283|r 54 ----------------------------------G-------FATS--IRGDWLMEQMRQQAENFG------TKIIQD-L 83 (321) Q Consensus 54 ----------------------------------g-------~~~~--~~~~~l~~~~~~~~~~~~------v~~~~~-~ 83 (321) T Consensus 81 ~~L~~~la~~s~~a~~wl~d~~~~~~l~~~~~~GGhs~~R~Hrp~gG~~~G~~iv~~L~~~a~~~gskDsnlv~~~~n~~ 160 (487) T TIGR01813 81 PELVRTLAEESADAVDWLQDCGVGFRLDDLIQLGGHSVKRAHRPTGGAASGAEIVQKLSKKAKKEGSKDSNLVETRLNSK 160 (487) T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCC T ss_conf 89999999878899887764221000111443278764643034788767840117778877433774321122100672 Q ss_pred EEECCCCCCC----CCCCC-------CCCCC---CCCCEECCCCCC Q ss_conf 3201122222----22222-------22222---210000147766 Q gi|254780283|r 84 VVSVDLDRHP----FLVET-------QSGDL---WHADAVVIATGS 115 (321) Q Consensus 84 V~~i~~~~~~----~~v~~-------~~g~~---~~a~~lIiAtG~ 115 (321) T Consensus 161 v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~~~~~~a~k~Vv~AtGG 206 (487) T TIGR01813 161 VEDLIQDDQGQVVGVVVKGDYDFKDEKKGKKIYIKAAKAVVLATGG 206 (487) T ss_pred EEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECC T ss_conf 7999986971189999621225887777873267550606897576

HHsearch alignment for GI: 254780283 and conserved domain: TIGR01813