HHsearch alignment for GI: 254780283 and conserved domain: TIGR01816
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=99.25 E-value=4.8e-11 Score=83.09 Aligned_cols=299 Identities=19% Similarity=0.262 Sum_probs=138.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-----CC----CCCE---EEEEC--CCC-----------CCCC----
Q ss_conf 675199998977799999999986995999967-----88----7756---87501--007-----------8774----
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-----SD----LGGQ---LMITE--SIE-----------NYPG---- 54 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-----~~----~GG~---l~~~~--~i~-----------n~~g---- 54 (321)
T Consensus 1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDA 80 (615)
T TIGR01816 1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDA 80 (615)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 94227988687568999998632792388983136886411223445788851778798863640310005652124689
Q ss_pred -------------------------------------CC---------------CCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf -------------------------------------77---------------77897899986643232002322211
Q gi|254780283|r 55 -------------------------------------FA---------------TSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 55 -------------------------------------~~---------------~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
T Consensus 81 iE~Mc~~apeAV~ELEhmG~PFsRT~~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nvk~~t~FF~E 160 (615)
T TIGR01816 81 IEYMCKEAPEAVLELEHMGMPFSRTEEGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNVKADTSFFNE 160 (615)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEH
T ss_conf 98862313577876652777978888983320778697521156332324200014202579999876664318744750
Q ss_pred -EEEECCCC-CCC--------CCCCCCCCC--CCCCCEECCCCCCCCEEEEEC-CCCCCCEE--------ECCCCCCCCC
Q ss_conf -33201122-222--------222222222--221000014776642024652-77433202--------1012111111
Q gi|254780283|r 83 -LVVSVDLD-RHP--------FLVETQSGD--LWHADAVVIATGSEVKWLRLE-SEKKFQGF--------GVSACATCDG 141 (321)
Q Consensus 83 -~V~~i~~~-~~~--------~~v~~~~g~--~~~a~~lIiAtG~~~~~~~ip-G~~~~~~~--------~v~~~~~~d~ 141 (321)
T Consensus 161 ~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttnA~t~TGDG~gi~~RaGlP-lqDmEF 239 (615)
T TIGR01816 161 FYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTNAHTLTGDGVGIVLRAGLP-LQDMEF 239 (615)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCC
T ss_conf 2211046525789588799889876058888899541078973786405676644565521368888726887-113223
Q ss_pred CCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCC-CCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 11122100001025565431012101333222344-3433221--11121122355443322223112114864333444
Q gi|254780283|r 142 FFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVH-RRSSLRS--EKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLF 218 (321)
Q Consensus 142 ~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~-r~~~l~~--~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~ 218 (321)
T Consensus 240 ~QFH--PTGiagaG~LiTEG~----R-GEGG~L~Na~GERFMERYAP~-~KDL---AsRDvVaRsM~~Ei~EGRGvG~~K 308 (615)
T TIGR01816 240 WQFH--PTGIAGAGVLITEGV----R-GEGGILLNANGERFMERYAPT-AKDL---ASRDVVARSMTLEIREGRGVGPNK 308 (615)
T ss_pred CCCC--HHHHHCCCEEEEECC----C-CCCCEEECCCCCCCHHCCCCC-CCCC---CCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 1237--033410872675012----1-477552468875102001675-1003---686364662588764178969675
Q ss_pred CCCC-------C----EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEEC-CCCCCCCCCEEEECC
Q ss_conf 4433-------3----142032100000112222111232235656774256180699799008-885547898289701
Q gi|254780283|r 219 PSVS-------G----VRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMP-DSTATSIPGIFAAGD 286 (321)
Q Consensus 219 ~~~~-------~----v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~-~~~~Ts~p~Iya~GD 286 (321)
T Consensus 309 DhV~l~l~HLg~E~l~~kLPgI~E~a~~faGvDpvkdpiPV~PT~HY~MGGIPTn~~Gqvl~~~~~g~~~~V~GLyA~GE 388 (615)
T TIGR01816 309 DHVYLKLDHLGEEVLEEKLPGITELARTFAGVDPVKDPIPVLPTVHYMMGGIPTNYHGQVLRKDGDGNDSIVEGLYAAGE 388 (615)
T ss_pred CEEEEEECCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 88988613488578865287754899986388851078689886341576732156434886424789861023766424
Q ss_pred CCCC---CH-HH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 2688---44-56----78999979999999999997
Q gi|254780283|r 287 VADE---RY-RQ----AITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 287 v~~~---~~-~~----~~~A~~~G~~Aa~~i~~yl~ 314 (321)
T Consensus 389 ~ACvSVHGANRLGtNSLLDLVVFGR~ag~~~~~~~k 424 (615)
T TIGR01816 389 AACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYIK 424 (615)
T ss_pred HHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 520000253202112455788988999999999713