HHsearch alignment for GI: 254780283 and conserved domain: TIGR01816

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=99.25  E-value=4.8e-11  Score=83.09  Aligned_cols=299  Identities=19%  Similarity=0.262  Sum_probs=138.7

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-----CC----CCCE---EEEEC--CCC-----------CCCC----
Q ss_conf             675199998977799999999986995999967-----88----7756---87501--007-----------8774----
Q gi|254780283|r    4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-----SD----LGGQ---LMITE--SIE-----------NYPG----   54 (321)
Q Consensus         4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-----~~----~GG~---l~~~~--~i~-----------n~~g----   54 (321)
T Consensus         1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDA   80 (615)
T TIGR01816         1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDA   80 (615)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf             94227988687568999998632792388983136886411223445788851778798863640310005652124689


Q ss_pred             -------------------------------------CC---------------CCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf             -------------------------------------77---------------77897899986643232002322211
Q gi|254780283|r   55 -------------------------------------FA---------------TSIRGDWLMEQMRQQAENFGTKIIQD   82 (321)
Q Consensus        55 -------------------------------------~~---------------~~~~~~~l~~~~~~~~~~~~v~~~~~   82 (321)
T Consensus        81 iE~Mc~~apeAV~ELEhmG~PFsRT~~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nvk~~t~FF~E  160 (615)
T TIGR01816        81 IEYMCKEAPEAVLELEHMGMPFSRTEEGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNVKADTSFFNE  160 (615)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEH
T ss_conf             98862313577876652777978888983320778697521156332324200014202579999876664318744750


Q ss_pred             -EEEECCCC-CCC--------CCCCCCCCC--CCCCCEECCCCCCCCEEEEEC-CCCCCCEE--------ECCCCCCCCC
Q ss_conf             -33201122-222--------222222222--221000014776642024652-77433202--------1012111111
Q gi|254780283|r   83 -LVVSVDLD-RHP--------FLVETQSGD--LWHADAVVIATGSEVKWLRLE-SEKKFQGF--------GVSACATCDG  141 (321)
Q Consensus        83 -~V~~i~~~-~~~--------~~v~~~~g~--~~~a~~lIiAtG~~~~~~~ip-G~~~~~~~--------~v~~~~~~d~  141 (321)
T Consensus       161 ~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttnA~t~TGDG~gi~~RaGlP-lqDmEF  239 (615)
T TIGR01816       161 FYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTNAHTLTGDGVGIVLRAGLP-LQDMEF  239 (615)
T ss_pred             HHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCC
T ss_conf             2211046525789588799889876058888899541078973786405676644565521368888726887-113223


Q ss_pred             CCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCC-CCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf             11122100001025565431012101333222344-3433221--11121122355443322223112114864333444
Q gi|254780283|r  142 FFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVH-RRSSLRS--EKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLF  218 (321)
Q Consensus       142 ~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~-r~~~l~~--~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~  218 (321)
T Consensus       240 ~QFH--PTGiagaG~LiTEG~----R-GEGG~L~Na~GERFMERYAP~-~KDL---AsRDvVaRsM~~Ei~EGRGvG~~K  308 (615)
T TIGR01816       240 WQFH--PTGIAGAGVLITEGV----R-GEGGILLNANGERFMERYAPT-AKDL---ASRDVVARSMTLEIREGRGVGPNK  308 (615)
T ss_pred             CCCC--HHHHHCCCEEEEECC----C-CCCCEEECCCCCCCHHCCCCC-CCCC---CCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             1237--033410872675012----1-477552468875102001675-1003---686364662588764178969675


Q ss_pred             CCCC-------C----EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEEC-CCCCCCCCCEEEECC
Q ss_conf             4433-------3----142032100000112222111232235656774256180699799008-885547898289701
Q gi|254780283|r  219 PSVS-------G----VRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMP-DSTATSIPGIFAAGD  286 (321)
Q Consensus       219 ~~~~-------~----v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~-~~~~Ts~p~Iya~GD  286 (321)
T Consensus       309 DhV~l~l~HLg~E~l~~kLPgI~E~a~~faGvDpvkdpiPV~PT~HY~MGGIPTn~~Gqvl~~~~~g~~~~V~GLyA~GE  388 (615)
T TIGR01816       309 DHVYLKLDHLGEEVLEEKLPGITELARTFAGVDPVKDPIPVLPTVHYMMGGIPTNYHGQVLRKDGDGNDSIVEGLYAAGE  388 (615)
T ss_pred             CEEEEEECCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf             88988613488578865287754899986388851078689886341576732156434886424789861023766424


Q ss_pred             CCCC---CH-HH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf             2688---44-56----78999979999999999997
Q gi|254780283|r  287 VADE---RY-RQ----AITAAAMGCMAALEVEHYLS  314 (321)
Q Consensus       287 v~~~---~~-~~----~~~A~~~G~~Aa~~i~~yl~  314 (321)
T Consensus       389 ~ACvSVHGANRLGtNSLLDLVVFGR~ag~~~~~~~k  424 (615)
T TIGR01816       389 AACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYIK  424 (615)
T ss_pred             HHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             520000253202112455788988999999999713