HHsearch alignment for GI: 254780283 and conserved domain: TIGR01988
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=98.71 E-value=8.5e-08 Score=64.12 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=77.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCCCC----E--------E-------------------------E
Q ss_conf 1999989777999999999869-----9599996788775----6--------8-------------------------7
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAM-----LKPVIIAGSDLGG----Q--------L-------------------------M 44 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g-----~~v~iie~~~~GG----~--------l-------------------------~ 44 (321)
T Consensus 1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~D~R~~Al~~~S~~~L~~lG~W~~~~~~~~~ 80 (445)
T TIGR01988 1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQ 80 (445)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 96888473889999999841863124731799605211442211258765522010107999999867964452012126
Q ss_pred EECCCC--C--CCC-----CCCC----------------CCHHHHHHHHHHHHHHCC---CCCCCE-EEEECCCC-----
Q ss_conf 501007--8--774-----7777----------------897899986643232002---322211-33201122-----
Q gi|254780283|r 45 ITESIE--N--YPG-----FATS----------------IRGDWLMEQMRQQAENFG---TKIIQD-LVVSVDLD----- 90 (321)
Q Consensus 45 ~~~~i~--n--~~g-----~~~~----------------~~~~~l~~~~~~~~~~~~---v~~~~~-~V~~i~~~----- 90 (321)
T Consensus 81 p~~~~~V~D~~~~g~~~~P~~~~F~~~~~~~~~~~LG~~ven~~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (445)
T TIGR01988 81 PIRDIHVSDGGSFGRAPHPAALHFDADEVGGPAEALGYVVENRVLQQALWEALQELPNEKVTLLCPARVEELPRHSSKND 160 (445)
T ss_pred CCCEEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCC
T ss_conf 32048887267888888863687443441788011236711889999999999966896477516721477403677568
Q ss_pred CCCCCCCCCCCCC---CCCCEECCCCCCCC---EEEEEC
Q ss_conf 2222222222222---21000014776642---024652
Q gi|254780283|r 91 RHPFLVETQSGDL---WHADAVVIATGSEV---KWLRLE 123 (321)
Q Consensus 91 ~~~~~v~~~~g~~---~~a~~lIiAtG~~~---~~~~ip 123 (321)
T Consensus 161 ~~~v~~~L~~G~~~~~l~a~LlvgADG~~S~vR~~~gI~ 199 (445)
T TIGR01988 161 SDEVELTLSDGRQKLLLRARLLVGADGANSKVRQLAGIP 199 (445)
T ss_pred CCCEEEEECCCCEEEEEEECEEEEECCCCHHHHHHHCCC
T ss_conf 860799970894767898532787358652579971888