HHsearch alignment for GI: 254780283 and conserved domain: TIGR02028
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=92.96 E-value=0.021 Score=32.61 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=45.5
Q ss_pred CCCCCCCCCCCC-CCHHHHHC-CC-------CEECCCCEEEECCCCCCCC-------CCEEEECCCCCCCH----HHHHH
Q ss_conf 222211123223-56567742-56-------1806997990088855478-------98289701268844----56789
Q gi|254780283|r 238 NVDGIFIAIGYK-PNTKIFRH-QL-------KMTNTNYIWTMPDSTATSI-------PGIFAAGDVADERY----RQAIT 297 (321)
Q Consensus 238 ~~D~vi~a~G~~-pn~~~~~~-~~-------~~~~~g~i~~~~~~~~Ts~-------p~Iya~GDv~~~~~----~~~~~ 297 (321)
T Consensus 216 K~DHVAVGTGTvk~~K~~Ik~lQ~g~R~RA~~K~~GG~iirVEAHPIPEHPRPRRv~~RVALVGDAAG~VTkcSGEGIYF 295 (401)
T TIGR02028 216 KCDHVAVGTGTVKAAKDEIKKLQSGIRARAADKVAGGKIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYF 295 (401)
T ss_pred CCCEEEECCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEECCEEEEEECCCCCEEECCCCHHHH
T ss_conf 73647733531450507889998888787886604880899813477542488500120577633667535003650546
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99979999999999
Q gi|254780283|r 298 AAAMGCMAALEVEH 311 (321)
Q Consensus 298 A~~~G~~Aa~~i~~ 311 (321)
T Consensus 296 AAkSgR~Ca~a~~~ 309 (401)
T TIGR02028 296 AAKSGRLCAEAIVE 309 (401)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 65444568899886