HHsearch alignment for GI: 254780283 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=0 Score=517.54 Aligned_cols=303 Identities=34% Similarity=0.604 Sum_probs=285.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
T Consensus 210 ~~~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~-~~GGqv~~t~~IeNypG~~~-i~G~eL~~~~~~qa~~~gv~~~~~ 287 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE-RIGGQVKDTVGIENLISVPY-TTGSQLAANLEEHIKQYPIDLMEN 287 (515)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCEECCCEEECCCCCC-CCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 7888889989678999999999977997699924-87753130346004489877-757999999999999749689913
Q ss_pred -EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf -3320112222222222222222100001477664202465277433202101211111111122100001025565431
Q gi|254780283|r 83 -LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEE 161 (321)
Q Consensus 83 -~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~ 161 (321)
T Consensus 288 ~~v~~i~~~~~~~~v~~~~g~~~~aktVIiATGa~~r~l~vpGE~e~~GkGVsYCa~CDG~~fkgK~VaVvGGGnsA~ee 367 (515)
T TIGR03140 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEA 367 (515)
T ss_pred CEEEEEECCCCCEEEEECCCCEEEECEEEECCCCCCCCCCCCCHHHCCCCCCCEECCCCCHHCCCCEEEEECCCHHHHHH
T ss_conf 36999972798189998799899939799956987355899967870387401001078101189769998997799999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 01210133322234434332211112112235544332222311211486433344444333142032100000112222
Q gi|254780283|r 162 ALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDG 241 (321)
Q Consensus 162 A~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~ 241 (321)
T Consensus 368 Al~La~~a~~Vtli~r~~~~ra~~~l~~kl~~~~nI~i~~~~~v~eI~Gdg~------~v~~v~~~d~~tge~~~l~vdG 441 (515)
T TIGR03140 368 AIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPNVDILTSAQTTEIVGDGD------KVTGIRYQDRNSGEEKQLDLDG 441 (515)
T ss_pred HHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCEEEEEECCCC------EEEEEEEEECCCCCEEEEECCE
T ss_conf 9999841771699736523343388999998389868997988899987898------5899999988999779998689
Q ss_pred CCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1112322356567742561806997990088855478982897012688445678999979999999999997
Q gi|254780283|r 242 IFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 242 vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
T Consensus 442 vFV~iG~~Pnt~~l~~~v~l~~~G~I~-vD~~~~TnvpGVFAAGDvt~~~~kQi~~A~G~Ga~AAlsA~~Yl~ 513 (515)
T TIGR03140 442 VFVQIGLVPNTEWLKDAVELNRRGEIV-IDERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred EEEECCCCCCHHHHHCHHCCCCCCEEE-CCCCCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHH
T ss_conf 999849976625651511107997398-299870799987985667389866787866647999999999873