HHsearch alignment for GI: 254780283 and conserved domain: TIGR03140
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.84 E-value=0.0001 Score=46.15 Aligned_cols=93 Identities=25% Similarity=0.325 Sum_probs=54.2
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCCCCCCCC--CCCCC---------C-----CCCCCCC---CCCCCCCCCCCCCEEEC
Q ss_conf 0000102556543101210133322234434--33221---------1-----1121122---35544332222311211
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRR--SSLRS---------E-----KILQEKL---FLQSNIDFLFDTEVVDV 208 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~--~~l~~---------~-----~~~~~~~---~~~~~i~~~~~~~v~~i 208 (321)
T Consensus 214 DviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~GGqv~~t~~IeNypG~~~i~G~eL~~~~~~qa~~~gv~~~~~~~v~~i 293 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKI 293 (515)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEE
T ss_conf 88998967899999999997799769992487753130346004489877757999999999999749689913369999
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 48643334444433314203210000011222211123223565
Q gi|254780283|r 209 IGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNT 252 (321)
Q Consensus 209 ~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 252 (321)
T Consensus 294 ~~~~~-------~~~v~~---~~g--~~~~aktVIiATGa~~r~ 325 (515)
T TIGR03140 294 ETEDG-------LIVVTL---ESG--EVLKAKSVIVATGARWRK 325 (515)
T ss_pred ECCCC-------CEEEEE---CCC--CEEEECEEEECCCCCCCC
T ss_conf 72798-------189998---799--899939799956987355