HHsearch alignment for GI: 254780283 and conserved domain: TIGR03143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=0 Score=507.40 Aligned_cols=305 Identities=38% Similarity=0.647 Sum_probs=283.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
T Consensus 2 ~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~GGqi~~t~~VeNYPG~~~-isG~eL~~~m~~qA~~~Gve~~~~ 80 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILN-TTGPELMQEMRQQAQDFGVKFLQA 80 (555)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCEEECCCCCC-CCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8447299999568899999999978996799966886865563685687888779-868999999999999779699965
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCE
Q ss_conf 33201122222222222222221000014776642024652774332021012111111111221000010255654310
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEA 162 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A 162 (321)
T Consensus 81 ~V~~i~~~g~~k~V~t~~g-~~~ak~VIIATGa~pr~LgipGE~ef~GrGVsYCAtCDG~ff~gK~V~VIGGG~~A~EeA 159 (555)
T TIGR03143 81 EVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEA 159 (555)
T ss_pred EEEEEECCCCCEEEEECCC-EEEECEEEECCCCCCCCCCCCCHHHCCCCCEEEEECCCHHHCCCCEEEEECCCHHHHHHH
T ss_conf 6999973799589998897-899697999999971438999732216871377403763241798699983888999999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC---
Q ss_conf 12101333222344343322111121122355443322223112114864333444443331420321000001122---
Q gi|254780283|r 163 LHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNV--- 239 (321)
Q Consensus 163 ~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~--- 239 (321)
T Consensus 160 ~~Ls~~askVtII~r~d~f~a~~~~~e~~~~~~kI~v~~nt~v~ei~G~~~-------v~~~~~~n~~tGe~~~~~~~~~ 232 (555)
T TIGR03143 160 VFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATGDDG-------LRYAKFVNNVTGEITEYKAPKD 232 (555)
T ss_pred HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCEEEEEECCCC-------EEEEEEEECCCCCEEEEECCCC
T ss_conf 999974890899997875685899999998579859997888999986785-------4899999988897899604656
Q ss_pred ---CCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---22111232235656774256180699799008885547898289701268844567899997999999999999742
Q gi|254780283|r 240 ---DGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 240 ---D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
T Consensus 233 ~~t~GVFVaiG~~PnTeL~k~~VelDe~GyI~-tDe~m~TnVpGVyAAGDV~~k~lrQvvTA~~dGaiAA~~aerYi~~~ 311 (555)
T TIGR03143 233 AGTFGVFVFVGYAPSSELFKGVVELDKRGYIP-TNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred CCCEEEEEEECCCCCCHHHHCCCCCCCCCEEE-ECCCCCCCCCCEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 67628999979965415660732588897197-39997059998898834528987735470875799999999999999
Q ss_pred H
Q ss_conf 2
Q gi|254780283|r 317 Q 317 (321)
Q Consensus 317 ~ 317 (321)
T Consensus 312 ~ 312 (555)
T TIGR03143 312 K 312 (555)
T ss_pred H
T ss_conf 9