HHsearch alignment for GI: 254780283 and conserved domain: TIGR03143

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.78  E-value=0.00015  Score=45.15  Aligned_cols=96  Identities=16%  Similarity=0.211  Sum_probs=58.6

Q ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf             6751999989777999999999869959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r    4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-   82 (321)
Q Consensus         4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-   82 (321)
T Consensus       142 ~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~---------------f~a---~~~~~e~~~~---~~kI~v~~nt  200 (555)
T TIGR03143       142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD---------------FTC---AKLIAEKVKN---HPKIEVKFNT  200 (555)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCC---------------CCC---CHHHHHHHHH---CCCEEEEECC
T ss_conf             798699983888999999999974890899997875---------------685---8999999985---7985999788


Q ss_pred             EEEECCCCCCCCCCC---CCCCCC--CCC------CEECCCCCCCCEEE
Q ss_conf             332011222222222---222222--210------00014776642024
Q gi|254780283|r   83 LVVSVDLDRHPFLVE---TQSGDL--WHA------DAVVIATGSEVKWL  120 (321)
Q Consensus        83 ~V~~i~~~~~~~~v~---~~~g~~--~~a------~~lIiAtG~~~~~~  120 (321)
T Consensus       201 ~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe  249 (555)
T TIGR03143       201 ELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE  249 (555)
T ss_pred             EEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH
T ss_conf             8999986785489999998889789960465667628999979965415