HHsearch alignment for GI: 254780283 and conserved domain: TIGR03143
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.78 E-value=0.00015 Score=45.15 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 6751999989777999999999869959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
T Consensus 142 ~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~---------------f~a---~~~~~e~~~~---~~kI~v~~nt 200 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD---------------FTC---AKLIAEKVKN---HPKIEVKFNT 200 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCC---------------CCC---CHHHHHHHHH---CCCEEEEECC
T ss_conf 798699983888999999999974890899997875---------------685---8999999985---7985999788
Q ss_pred EEEECCCCCCCCCCC---CCCCCC--CCC------CEECCCCCCCCEEE
Q ss_conf 332011222222222---222222--210------00014776642024
Q gi|254780283|r 83 LVVSVDLDRHPFLVE---TQSGDL--WHA------DAVVIATGSEVKWL 120 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~---~~~g~~--~~a------~~lIiAtG~~~~~~ 120 (321)
T Consensus 201 ~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe 249 (555)
T TIGR03143 201 ELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE 249 (555)
T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH
T ss_conf 8999986785489999998889789960465667628999979965415