HHsearch alignment for GI: 254780283 and conserved domain: TIGR03169
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.47 E-value=7.8e-07 Score=58.50 Aligned_cols=94 Identities=24% Similarity=0.337 Sum_probs=66.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHH----CCCC--EEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7519999897779999999998----6995--999967887756875010078774777789789998664323200232
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAAR----AMLK--PVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTK 78 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r----~g~~--v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~ 78 (321)
T Consensus 145 ~~~v~vvGgG~~gvE~a~~l~~~~~~~~~~~~v~i~~~~~----~--------l~~~~-----~~~~~~~~~~l~~~gI~ 207 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGAS----L--------LPGFP-----AKVRRLVLRLLARRGIE 207 (364)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----C--------CHHCC-----HHHHHHHHHHHHHCCCE
T ss_conf 9645897858179999999999987468742799835775----1--------01259-----99999999999977956
Q ss_pred CCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf 2211-3320112222222222222222100001477664202
Q gi|254780283|r 79 IIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 79 ~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
T Consensus 208 v~~~~~v~~v~~~----~v~l~~g~~i~~d~vi~~~G~~p~~ 245 (364)
T TIGR03169 208 VHEGAPVTRGPDG----ALILADGRTLPADAILWATGARAPP 245 (364)
T ss_pred EEECCEEEEECCC----CEEECCCCEEEEEEEEECCCCCCCH
T ss_conf 9837536897799----5183799789630899888877886