Query gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 321
No_of_seqs 126 out of 12620
Neff 8.8
Searched_HMMs 39220
Date Tue May 24 14:38:48 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780283.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01292 TRX_reduct thioredox 100.0 0 0 594.7 11.5 301 6-313 1-321 (321)
2 TIGR03140 AhpF alkyl hydropero 100.0 0 0 517.5 13.7 303 3-314 210-513 (515)
3 TIGR03143 AhpF_homolog putativ 100.0 0 0 507.4 14.5 305 3-317 2-312 (555)
4 PRK10262 thioredoxin reductase 100.0 0 0 464.1 13.8 310 1-318 1-319 (321)
5 COG0492 TrxB Thioredoxin reduc 100.0 0 0 459.8 13.9 302 4-317 2-304 (305)
6 KOG0404 consensus 100.0 0 0 429.8 12.9 307 1-314 4-319 (322)
7 COG3634 AhpF Alkyl hydroperoxi 100.0 0 0 402.0 6.2 303 3-314 209-515 (520)
8 TIGR01350 lipoamide_DH dihydro 100.0 0 0 356.8 12.7 291 5-311 1-345 (481)
9 PRK06292 dihydrolipoamide dehy 100.0 0 0 344.3 13.7 290 4-310 2-329 (460)
10 PRK11749 putative oxidoreducta 100.0 0 0 338.8 15.7 298 3-318 138-459 (460)
11 PRK12770 putative glutamate sy 100.0 0 0 337.6 16.4 303 3-315 15-349 (350)
12 PRK06370 mercuric reductase; V 100.0 0 0 338.9 14.2 288 2-310 1-331 (459)
13 PRK12831 putative oxidoreducta 100.0 0 0 333.8 17.0 298 3-316 138-463 (464)
14 PRK05249 soluble pyridine nucl 100.0 0 0 332.2 15.3 291 1-310 2-334 (465)
15 PRK12778 putative bifunctional 100.0 0 0 331.3 14.9 295 3-315 437-759 (760)
16 TIGR01316 gltA glutamate synth 100.0 0 0 337.8 9.0 294 2-313 139-462 (462)
17 PRK06116 glutathione reductase 100.0 0 0 331.7 13.8 282 3-310 2-326 (450)
18 PRK12814 putative NADPH-depend 100.0 0 0 328.9 15.4 295 4-316 192-503 (652)
19 PRK06416 dihydrolipoamide dehy 100.0 0 0 326.3 15.7 292 2-310 1-332 (462)
20 PRK12769 putative oxidoreducta 100.0 0 0 323.7 16.0 294 4-315 326-653 (654)
21 PRK12809 putative oxidoreducta 100.0 0 0 322.0 17.3 297 4-318 309-639 (639)
22 PRK12775 putative trifunctiona 100.0 0 0 322.3 14.8 296 4-316 431-755 (993)
23 PRK07251 pyridine nucleotide-d 100.0 0 0 322.6 13.8 288 4-310 2-314 (438)
24 PRK07818 dihydrolipoamide dehy 100.0 0 0 322.9 13.4 294 1-310 1-335 (467)
25 PRK05976 dihydrolipoamide dehy 100.0 0 0 320.7 14.4 289 3-310 2-334 (464)
26 PRK06327 dihydrolipoamide dehy 100.0 0 0 321.5 12.3 295 3-311 2-346 (475)
27 PRK12810 gltD glutamate syntha 100.0 0 0 317.0 16.1 290 4-316 142-469 (472)
28 PRK12771 putative glutamate sy 100.0 0 0 315.8 16.0 291 3-317 135-443 (560)
29 PRK13748 putative mercuric red 100.0 0 0 317.4 14.4 287 2-310 95-426 (561)
30 PRK06467 dihydrolipoamide dehy 100.0 0 0 314.0 14.1 289 3-310 2-335 (472)
31 PRK13984 putative oxidoreducta 100.0 0 0 313.1 14.6 292 4-315 282-603 (604)
32 PRK07845 flavoprotein disulfid 100.0 0 0 312.8 13.6 288 6-310 2-336 (467)
33 PRK09853 putative selenate red 100.0 0 0 311.8 14.5 287 4-311 549-850 (1032)
34 TIGR03315 Se_ygfK putative sel 100.0 0 0 309.0 14.8 289 3-311 535-837 (1012)
35 COG1249 Lpd Pyruvate/2-oxoglut 100.0 0 0 307.0 16.1 292 3-311 2-334 (454)
36 PRK06912 acoL dihydrolipoamide 100.0 0 0 307.4 14.2 286 6-310 1-328 (458)
37 PRK09564 coenzyme A disulfide 100.0 0 0 309.7 12.2 285 6-310 1-314 (443)
38 PRK08010 pyridine nucleotide-d 100.0 0 0 309.1 11.5 288 4-310 2-315 (441)
39 PRK12779 putative bifunctional 100.0 0 0 307.5 12.7 291 3-311 304-624 (944)
40 PRK06115 dihydrolipoamide dehy 100.0 0 0 302.9 13.7 292 4-310 2-336 (466)
41 TIGR02053 MerA mercuric reduct 100.0 0 0 307.0 9.7 294 6-310 1-351 (494)
42 PTZ00052 thioredoxin reductase 100.0 0 0 300.0 15.0 290 3-310 39-381 (541)
43 TIGR01318 gltD_gamma_fam gluta 100.0 0 0 298.5 14.6 295 2-314 140-479 (480)
44 TIGR01317 GOGAT_sm_gam glutama 100.0 0 0 297.3 14.4 300 5-315 151-511 (517)
45 pfam07992 Pyr_redox_2 Pyridine 100.0 0 0 300.8 10.7 265 7-291 1-276 (277)
46 TIGR03452 mycothione_red mycot 100.0 0 0 298.2 11.6 282 4-310 1-326 (452)
47 PRK07846 mycothione/glutathion 100.0 0 0 296.6 12.2 284 5-311 1-326 (453)
48 PRK09754 phenylpropionate diox 100.0 0 0 295.5 11.9 282 5-310 3-307 (400)
49 TIGR01421 gluta_reduc_1 glutat 100.0 0 0 290.4 11.0 292 4-311 1-350 (475)
50 PRK13512 coenzyme A disulfide 100.0 0 0 288.6 10.2 283 6-310 2-310 (438)
51 PRK04965 nitric oxide reductas 100.0 0 0 287.9 10.7 286 1-310 1-300 (378)
52 PTZ00153 lipoamide dehydrogena 100.0 1.1E-44 0 279.3 14.0 299 3-310 121-501 (673)
53 TIGR03385 CoA_CoA_reduc CoA-di 100.0 1.4E-42 0 267.2 7.4 271 19-311 1-303 (427)
54 TIGR01438 TGR thioredoxin and 100.0 5.5E-40 1.4E-44 252.0 13.3 295 4-310 1-357 (513)
55 COG1252 Ndh NADH dehydrogenase 100.0 3.6E-40 9.8E-45 253.1 10.9 289 4-315 2-333 (405)
56 TIGR01424 gluta_reduc_2 glutat 100.0 3.3E-39 8.5E-44 247.4 13.2 283 5-308 2-354 (478)
57 TIGR03169 Nterm_to_SelD pyridi 100.0 1.6E-39 3.9E-44 249.4 9.2 283 8-315 2-312 (364)
58 KOG0405 consensus 100.0 2.3E-37 5.9E-42 236.7 12.3 286 3-311 18-349 (478)
59 TIGR02374 nitri_red_nirB nitri 100.0 6.3E-38 1.6E-42 240.0 5.5 265 8-290 1-290 (813)
60 KOG1335 consensus 100.0 7.6E-36 1.9E-40 227.8 9.9 289 4-308 38-373 (506)
61 KOG4716 consensus 100.0 3.6E-35 9.2E-40 223.9 12.6 295 2-310 16-363 (503)
62 KOG1336 consensus 100.0 1.8E-35 4.6E-40 225.6 8.2 266 5-292 74-354 (478)
63 COG1251 NirB NAD(P)H-nitrite r 100.0 4.6E-34 1.2E-38 217.5 9.6 286 6-311 4-305 (793)
64 PTZ00318 NADH dehydrogenase; P 100.0 1.5E-33 3.8E-38 214.4 10.0 288 5-316 10-358 (514)
65 COG0493 GltD NADPH-dependent g 100.0 2.5E-33 6.3E-38 213.2 10.4 292 5-314 123-451 (457)
66 pfam00743 FMO-like Flavin-bind 100.0 2.8E-32 7E-37 207.1 13.6 176 5-180 1-217 (532)
67 KOG0399 consensus 100.0 4E-32 1E-36 206.1 11.2 287 5-311 1785-2117(2142)
68 COG2072 TrkA Predicted flavopr 100.0 2.5E-28 6.4E-33 183.9 8.9 180 1-180 4-209 (443)
69 KOG1399 consensus 99.9 9.4E-27 2.4E-31 174.8 9.1 174 4-177 5-217 (448)
70 KOG2495 consensus 99.9 9.5E-26 2.4E-30 168.9 11.8 290 3-312 53-395 (491)
71 TIGR01372 soxA sarcosine oxida 99.9 1.6E-25 4.1E-30 167.6 11.3 294 4-313 175-498 (1026)
72 COG0446 HcaD Uncharacterized N 99.9 2.1E-26 5.4E-31 172.7 6.7 287 8-311 1-309 (415)
73 TIGR01423 trypano_reduc trypan 99.9 8.2E-24 2.1E-28 157.6 6.4 283 3-310 1-349 (486)
74 COG1148 HdrA Heterodisulfide r 99.8 1.9E-19 4.9E-24 132.1 11.1 92 224-317 450-548 (622)
75 KOG1800 consensus 99.8 1.6E-17 4.1E-22 120.8 12.9 282 4-314 19-407 (468)
76 PRK07803 sdhA succinate dehydr 99.8 2.2E-17 5.7E-22 120.0 13.4 41 1-41 4-44 (631)
77 KOG2755 consensus 99.8 8.4E-20 2.1E-24 134.2 0.0 263 7-289 1-321 (334)
78 PRK08275 putative oxidoreducta 99.7 3.1E-17 7.8E-22 119.2 12.7 52 265-317 357-408 (554)
79 KOG1346 consensus 99.7 4.5E-19 1.2E-23 129.9 2.5 287 4-310 177-517 (659)
80 PRK06452 sdhA succinate dehydr 99.7 8.2E-17 2.1E-21 116.7 12.8 39 1-39 1-39 (566)
81 KOG3851 consensus 99.7 1.1E-17 2.8E-22 121.9 7.2 288 2-311 36-358 (446)
82 PRK10157 putative oxidoreducta 99.7 1.2E-15 3E-20 109.9 14.7 117 1-117 1-164 (428)
83 COG2081 Predicted flavoprotein 99.7 1.1E-16 2.9E-21 116.0 8.2 115 4-118 2-170 (408)
84 PRK13800 putative oxidoreducta 99.7 4.4E-16 1.1E-20 112.5 11.2 49 268-316 364-412 (894)
85 COG3486 IucD Lysine/ornithine 99.7 8.9E-16 2.3E-20 110.7 12.5 302 1-316 1-413 (436)
86 PRK07057 sdhA succinate dehydr 99.7 2.6E-15 6.6E-20 108.0 14.6 39 1-39 8-46 (591)
87 PTZ00188 adrenodoxin reductase 99.7 2.3E-16 6E-21 114.1 9.0 285 4-315 38-441 (506)
88 PTZ00139 succinate dehydrogena 99.7 2.6E-15 6.7E-20 108.0 13.9 38 3-40 32-69 (622)
89 PRK09078 sdhA succinate dehydr 99.7 7E-15 1.8E-19 105.5 14.9 39 1-39 8-46 (598)
90 PRK08958 sdhA succinate dehydr 99.7 8.2E-15 2.1E-19 105.1 14.8 38 2-39 4-41 (588)
91 pfam03486 HI0933_like HI0933-l 99.6 7.2E-16 1.8E-20 111.2 9.0 110 6-116 1-163 (405)
92 PRK06263 sdhA succinate dehydr 99.6 8.5E-15 2.2E-19 105.0 13.8 113 4-117 6-197 (539)
93 PRK06175 L-aspartate oxidase; 99.6 1.4E-14 3.5E-19 103.8 14.4 114 3-117 2-189 (433)
94 PRK05945 sdhA succinate dehydr 99.6 1.2E-14 2.9E-19 104.2 14.0 114 4-117 2-197 (575)
95 PRK08205 sdhA succinate dehydr 99.6 7.2E-15 1.8E-19 105.4 12.0 38 1-39 1-38 (583)
96 PRK07804 L-aspartate oxidase; 99.6 7.1E-15 1.8E-19 105.4 11.5 39 3-41 13-51 (533)
97 PRK06069 sdhA succinate dehydr 99.6 2.4E-14 6E-19 102.4 13.5 39 1-39 1-42 (582)
98 PRK08626 fumarate reductase fl 99.6 9.9E-15 2.5E-19 104.6 11.3 39 1-39 1-39 (657)
99 PRK08641 sdhA succinate dehydr 99.6 3.4E-14 8.6E-19 101.5 13.9 53 264-317 355-414 (589)
100 PRK08401 L-aspartate oxidase; 99.6 8.2E-15 2.1E-19 105.1 10.4 112 6-117 2-175 (464)
101 PRK10015 hypothetical protein; 99.6 4.3E-15 1.1E-19 106.7 8.6 115 1-117 1-164 (429)
102 PRK09231 fumarate reductase fl 99.6 5.9E-14 1.5E-18 100.1 14.0 37 3-39 2-40 (582)
103 pfam01134 GIDA Glucose inhibit 99.6 3E-14 7.5E-19 101.8 11.9 109 7-115 1-150 (391)
104 PRK06481 fumarate reductase fl 99.6 2.9E-14 7.4E-19 101.9 11.1 113 3-115 58-248 (506)
105 PRK07395 L-aspartate oxidase; 99.6 1.3E-13 3.4E-18 98.0 12.6 113 3-117 8-198 (556)
106 COG1053 SdhA Succinate dehydro 99.5 5.1E-13 1.3E-17 94.6 15.1 39 1-39 2-40 (562)
107 PRK09077 L-aspartate oxidase; 99.5 1.3E-13 3.4E-18 98.0 11.9 36 3-39 6-41 (535)
108 PRK08071 L-aspartate oxidase; 99.5 4.3E-13 1.1E-17 95.0 13.1 34 5-39 3-36 (510)
109 PRK07512 L-aspartate oxidase; 99.5 3.7E-13 9.4E-18 95.4 11.7 114 1-116 5-196 (507)
110 PRK06854 adenylylsulfate reduc 99.5 7E-13 1.8E-17 93.8 11.4 38 3-40 9-48 (610)
111 PRK08020 ubiF 2-octaprenyl-3-m 99.5 5.3E-13 1.4E-17 94.5 10.3 117 1-117 1-169 (391)
112 PRK07494 2-octaprenyl-6-methox 99.5 5.4E-13 1.4E-17 94.5 9.4 117 1-117 1-165 (386)
113 PRK11259 solA N-methyltryptoph 99.5 3.1E-13 7.9E-18 95.9 8.1 112 4-116 2-203 (377)
114 TIGR02023 BchP-ChlP geranylger 99.4 1.4E-12 3.5E-17 92.1 10.3 240 6-314 1-319 (408)
115 pfam01266 DAO FAD dependent ox 99.4 1E-12 2.6E-17 92.9 7.9 36 7-42 1-36 (309)
116 PRK08773 2-octaprenyl-3-methyl 99.4 3.2E-12 8.1E-17 89.9 10.1 117 1-117 1-169 (392)
117 COG0644 FixC Dehydrogenases (f 99.4 1.8E-12 4.5E-17 91.4 8.2 114 4-117 2-152 (396)
118 TIGR00551 nadB L-aspartate oxi 99.4 2E-11 5.1E-16 85.3 12.9 113 4-116 1-205 (546)
119 PRK06847 hypothetical protein; 99.4 4.8E-12 1.2E-16 88.9 9.4 115 1-117 1-163 (375)
120 COG0029 NadB Aspartate oxidase 99.3 1.3E-11 3.2E-16 86.5 10.5 33 7-40 9-41 (518)
121 PRK07190 hypothetical protein; 99.3 1E-11 2.6E-16 87.0 9.5 123 1-123 1-174 (480)
122 PRK09126 hypothetical protein; 99.3 1.3E-11 3.4E-16 86.4 9.9 113 5-117 3-167 (392)
123 PRK06834 hypothetical protein; 99.3 9.4E-12 2.4E-16 87.2 8.8 113 5-117 3-156 (488)
124 PRK07608 hypothetical protein; 99.3 1.3E-11 3.2E-16 86.5 9.3 114 4-117 4-168 (389)
125 PTZ00306 NADH-dependent fumara 99.3 8.1E-11 2.1E-15 81.7 13.3 36 6-41 410-446 (1167)
126 PRK07364 2-octaprenyl-6-methox 99.3 1.9E-11 4.8E-16 85.4 9.9 117 1-117 13-180 (413)
127 PRK07045 putative monooxygenas 99.3 2.4E-11 6.2E-16 84.8 10.0 116 1-116 1-164 (388)
128 TIGR01790 carotene-cycl lycope 99.3 9.3E-12 2.4E-16 87.2 7.1 125 7-131 1-169 (419)
129 PRK08163 salicylate hydroxylas 99.3 2E-11 5.2E-16 85.2 8.8 116 1-117 1-166 (396)
130 PRK12842 putative succinate de 99.3 8.5E-12 2.2E-16 87.5 6.7 41 1-41 1-42 (567)
131 PRK04965 nitric oxide reductas 99.3 2.6E-11 6.5E-16 84.7 8.4 101 4-119 140-241 (378)
132 PRK05192 tRNA uridine 5-carbox 99.3 1.7E-11 4.4E-16 85.7 7.1 115 1-115 2-157 (621)
133 TIGR01816 sdhA_forward succina 99.2 4.8E-11 1.2E-15 83.1 9.1 299 4-314 1-424 (615)
134 PRK06184 hypothetical protein; 99.2 8.9E-11 2.3E-15 81.5 10.4 117 1-117 1-171 (503)
135 PRK05732 2-octaprenyl-6-methox 99.2 5.4E-11 1.4E-15 82.8 9.1 114 4-117 2-169 (395)
136 PRK08013 hypothetical protein; 99.2 7E-11 1.8E-15 82.1 9.4 114 4-117 2-168 (400)
137 PRK08849 2-octaprenyl-3-methyl 99.2 5.4E-11 1.4E-15 82.8 8.7 114 4-117 2-167 (384)
138 PRK08850 2-octaprenyl-6-methox 99.2 6.8E-11 1.7E-15 82.2 9.2 115 1-116 1-167 (405)
139 PRK06183 mhpA 3-(3-hydroxyphen 99.2 7.8E-11 2E-15 81.8 9.3 115 3-117 10-176 (554)
140 TIGR03378 glycerol3P_GlpB glyc 99.2 1.1E-10 2.9E-15 80.9 10.1 33 6-38 1-33 (419)
141 PRK05714 2-octaprenyl-3-methyl 99.2 9.7E-11 2.5E-15 81.3 9.7 113 5-117 2-168 (405)
142 PRK11445 putative oxidoreducta 99.2 1E-10 2.6E-15 81.2 9.6 112 5-117 1-157 (348)
143 PRK08274 tricarballylate dehyd 99.2 1.3E-10 3.3E-15 80.6 9.4 112 4-116 3-186 (456)
144 PRK07333 2-octaprenyl-6-methox 99.2 1.1E-10 2.7E-15 81.0 8.9 113 5-117 1-167 (403)
145 PRK08244 hypothetical protein; 99.2 1.2E-10 3E-15 80.8 9.1 113 5-117 2-159 (494)
146 pfam01494 FAD_binding_3 FAD bi 99.2 1.2E-10 3E-15 80.8 9.1 112 5-116 1-161 (349)
147 PRK06185 hypothetical protein; 99.2 1.9E-10 4.8E-15 79.6 10.1 117 1-117 2-169 (409)
148 pfam01946 Thi4 Thi4 family. Th 99.2 6.4E-11 1.6E-15 82.3 7.6 41 3-43 15-56 (229)
149 COG0654 UbiH 2-polyprenyl-6-me 99.2 1.4E-10 3.6E-15 80.3 9.2 114 4-117 1-162 (387)
150 PRK04176 ribulose-1,5-biphosph 99.2 7.4E-11 1.9E-15 82.0 7.3 40 4-43 24-64 (257)
151 PRK11728 hypothetical protein; 99.2 1.3E-10 3.4E-15 80.5 8.4 112 5-116 2-204 (400)
152 PRK12409 D-amino acid dehydrog 99.2 1.5E-10 3.8E-15 80.2 8.5 34 6-39 2-35 (410)
153 PRK09754 phenylpropionate diox 99.2 1.6E-10 4.1E-15 80.0 8.3 103 3-121 142-245 (400)
154 PRK08774 consensus 99.2 3.2E-10 8.2E-15 78.3 9.8 36 3-38 2-37 (402)
155 TIGR03329 Phn_aa_oxid putative 99.2 1.2E-10 3E-15 80.8 7.6 38 3-40 22-61 (460)
156 PRK06126 hypothetical protein; 99.2 2.8E-10 7.2E-15 78.6 9.3 115 3-117 5-188 (545)
157 PRK06134 putative FAD-binding 99.2 7.9E-11 2E-15 81.8 6.4 39 3-41 8-47 (579)
158 PRK07236 hypothetical protein; 99.2 2.7E-10 6.9E-15 78.7 9.1 110 5-116 6-153 (386)
159 TIGR01812 sdhA_frdA_Gneg succi 99.1 7.2E-10 1.8E-14 76.2 10.9 300 7-316 1-456 (636)
160 COG2509 Uncharacterized FAD-de 99.1 5E-10 1.3E-14 77.1 9.9 53 62-114 173-227 (486)
161 COG1635 THI4 Ribulose 1,5-bisp 99.1 1.7E-10 4.3E-15 79.9 7.5 39 5-43 30-69 (262)
162 TIGR01813 flavo_cyto_c flavocy 99.1 9.9E-11 2.5E-15 81.2 6.1 109 7-115 1-206 (487)
163 PRK07588 hypothetical protein; 99.1 3.6E-10 9.1E-15 78.0 8.7 110 7-117 2-158 (391)
164 PRK12843 putative FAD-binding 99.1 1.4E-10 3.5E-15 80.4 6.6 40 2-41 11-51 (576)
165 PRK01747 mnmC 5-methylaminomet 99.1 3.5E-10 9E-15 78.0 8.6 112 4-116 255-457 (660)
166 PRK06475 salicylate hydroxylas 99.1 5.3E-10 1.4E-14 77.0 9.3 113 5-117 2-167 (400)
167 TIGR03364 HpnW_proposed FAD de 99.1 2.8E-10 7.2E-15 78.6 7.9 36 6-41 1-36 (365)
168 PRK05868 hypothetical protein; 99.1 5.4E-10 1.4E-14 76.9 9.0 111 6-117 2-160 (372)
169 PRK06996 hypothetical protein; 99.1 7E-10 1.8E-14 76.3 9.4 116 1-116 7-173 (397)
170 PRK12844 3-ketosteroid-delta-1 99.1 2.1E-10 5.5E-15 79.3 6.7 38 4-41 5-43 (552)
171 PRK07121 hypothetical protein; 99.1 7.6E-10 1.9E-14 76.1 9.3 39 3-41 18-57 (491)
172 pfam00890 FAD_binding_2 FAD bi 99.1 8.8E-10 2.2E-14 75.7 9.5 35 7-41 1-36 (401)
173 COG0445 GidA Flavin-dependent 99.1 1.3E-10 3.4E-15 80.5 5.1 113 4-116 3-157 (621)
174 TIGR03385 CoA_CoA_reduc CoA-di 99.1 7.6E-10 1.9E-14 76.1 8.9 100 5-121 137-237 (427)
175 PRK06753 hypothetical protein; 99.1 9E-10 2.3E-14 75.6 9.1 109 7-117 2-152 (373)
176 PRK07573 sdhA succinate dehydr 99.1 1.1E-09 2.8E-14 75.2 9.5 35 2-36 30-64 (638)
177 PRK06567 putative bifunctional 99.1 3.9E-10 1E-14 77.8 7.1 288 3-313 399-789 (1048)
178 PRK11101 glpA sn-glycerol-3-ph 99.1 9.9E-10 2.5E-14 75.4 8.7 41 1-41 1-41 (545)
179 PRK07845 flavoprotein disulfid 99.1 7.8E-10 2E-14 76.0 8.1 101 4-120 177-278 (467)
180 PRK05249 soluble pyridine nucl 99.1 6.7E-10 1.7E-14 76.4 7.6 100 4-119 175-275 (465)
181 PRK05976 dihydrolipoamide dehy 99.1 2E-09 5E-14 73.7 9.9 102 3-120 173-277 (464)
182 pfam05834 Lycopene_cycl Lycope 99.1 1.2E-09 3.1E-14 74.9 8.8 127 7-133 1-158 (374)
183 PRK08132 hypothetical protein; 99.0 3.2E-09 8.1E-14 72.5 10.9 115 3-117 21-185 (549)
184 COG4529 Uncharacterized protei 99.0 1.4E-09 3.5E-14 74.6 8.5 173 6-179 2-231 (474)
185 PRK12845 3-ketosteroid-delta-1 99.0 1.9E-09 4.8E-14 73.8 9.0 37 4-41 15-52 (566)
186 COG0446 HcaD Uncharacterized N 99.0 2.9E-09 7.4E-14 72.7 9.7 98 5-118 136-238 (415)
187 PRK13748 putative mercuric red 99.0 2.4E-09 6E-14 73.2 9.2 98 5-120 270-368 (561)
188 KOG0029 consensus 99.0 8.1E-10 2.1E-14 75.9 6.4 44 2-45 12-56 (501)
189 PRK08948 consensus 99.0 2.3E-09 5.8E-14 73.3 8.5 112 6-117 1-166 (392)
190 PTZ00052 thioredoxin reductase 99.0 3.1E-09 8E-14 72.5 8.8 100 3-119 220-320 (541)
191 PRK09564 coenzyme A disulfide 99.0 2.7E-09 6.9E-14 72.9 8.4 102 5-122 149-251 (443)
192 PRK06116 glutathione reductase 99.0 2.9E-09 7.5E-14 72.6 8.3 100 5-120 167-268 (450)
193 PRK00711 D-amino acid dehydrog 99.0 2.8E-09 7.2E-14 72.8 8.2 32 7-38 2-33 (416)
194 PRK13512 coenzyme A disulfide 99.0 2.7E-09 7E-14 72.8 8.1 99 4-122 147-246 (438)
195 PRK07843 3-ketosteroid-delta-1 99.0 1E-09 2.6E-14 75.3 5.9 41 1-41 1-42 (560)
196 TIGR01350 lipoamide_DH dihydro 99.0 4.5E-09 1.1E-13 71.6 9.1 104 5-127 178-292 (481)
197 PRK07208 hypothetical protein; 99.0 1.4E-09 3.6E-14 74.5 6.5 42 3-44 1-43 (474)
198 PRK07538 hypothetical protein; 99.0 1.4E-08 3.4E-13 68.8 11.0 111 6-116 1-164 (413)
199 TIGR00292 TIGR00292 thiazole b 98.9 6.8E-10 1.7E-14 76.4 4.0 38 5-42 21-61 (283)
200 PRK06115 dihydrolipoamide dehy 98.9 4E-09 1E-13 71.9 7.6 102 3-120 172-279 (466)
201 COG1249 Lpd Pyruvate/2-oxoglut 98.9 6.8E-09 1.7E-13 70.5 8.7 99 6-120 174-275 (454)
202 PRK13369 glycerol-3-phosphate 98.9 7E-09 1.8E-13 70.5 8.7 41 1-41 1-42 (503)
203 PRK06416 dihydrolipoamide dehy 98.9 4.8E-09 1.2E-13 71.4 7.9 100 5-120 172-275 (462)
204 PRK07846 mycothione/glutathion 98.9 5.5E-09 1.4E-13 71.1 7.9 98 6-120 169-267 (453)
205 PRK07251 pyridine nucleotide-d 98.9 4.9E-09 1.3E-13 71.3 7.6 100 3-119 155-255 (438)
206 PRK08010 pyridine nucleotide-d 98.9 7.6E-09 1.9E-13 70.2 8.4 99 5-120 158-257 (441)
207 TIGR02485 CobZ_N-term precorri 98.9 4E-09 1E-13 71.9 6.9 115 6-120 2-195 (467)
208 TIGR02032 GG-red-SF geranylger 98.9 1.4E-09 3.5E-14 74.6 4.5 112 6-117 1-172 (343)
209 COG1233 Phytoene dehydrogenase 98.9 2.9E-09 7.4E-14 72.7 6.1 41 4-44 2-43 (487)
210 PRK06370 mercuric reductase; V 98.9 8.5E-09 2.2E-13 70.0 8.3 100 5-120 170-273 (459)
211 PRK06912 acoL dihydrolipoamide 98.9 1.1E-08 2.7E-13 69.4 8.6 101 4-120 169-271 (458)
212 TIGR03219 salicylate_mono sali 98.9 1.5E-08 3.8E-13 68.5 8.9 110 6-116 1-158 (414)
213 KOG2415 consensus 98.9 1.1E-08 2.8E-13 69.3 8.1 41 3-43 74-121 (621)
214 PRK07233 hypothetical protein; 98.9 5.1E-09 1.3E-13 71.3 5.8 39 7-45 1-40 (430)
215 PRK07818 dihydrolipoamide dehy 98.9 1.6E-08 4E-13 68.4 8.3 100 5-120 172-277 (467)
216 TIGR03452 mycothione_red mycot 98.9 1.6E-08 4.1E-13 68.3 8.3 97 6-119 170-267 (452)
217 TIGR02352 thiamin_ThiO glycine 98.8 9.5E-09 2.4E-13 69.7 7.1 108 8-116 1-207 (357)
218 PRK09897 hypothetical protein; 98.8 3.6E-09 9.1E-14 72.2 4.9 155 6-167 2-212 (535)
219 PRK06327 dihydrolipoamide dehy 98.8 1.6E-08 4.2E-13 68.3 8.1 101 5-121 183-288 (475)
220 COG3380 Predicted NAD/FAD-depe 98.8 5.5E-09 1.4E-13 71.1 5.6 107 7-115 3-158 (331)
221 TIGR03467 HpnE squalene-associ 98.8 6.6E-09 1.7E-13 70.6 5.4 38 8-45 1-39 (430)
222 PRK06292 dihydrolipoamide dehy 98.8 2.5E-08 6.4E-13 67.2 8.4 98 6-120 170-271 (460)
223 pfam04820 Trp_halogenase Trypt 98.8 3.1E-08 7.9E-13 66.7 8.5 114 7-120 1-217 (457)
224 COG0579 Predicted dehydrogenas 98.8 3.7E-08 9.6E-13 66.2 8.3 113 4-116 2-210 (429)
225 TIGR01317 GOGAT_sm_gam glutama 98.8 1.2E-09 3.1E-14 74.9 0.4 104 144-255 149-267 (517)
226 PRK12266 glpD glycerol-3-phosp 98.8 6.3E-08 1.6E-12 64.9 8.9 40 2-41 3-42 (503)
227 PRK11883 protoporphyrinogen ox 98.7 2.1E-08 5.4E-13 67.6 6.2 40 6-45 1-43 (452)
228 PRK06617 2-octaprenyl-6-methox 98.7 6.9E-08 1.7E-12 64.7 8.8 32 6-37 2-33 (374)
229 PRK12839 hypothetical protein; 98.7 1.8E-08 4.7E-13 68.0 5.6 39 3-41 7-46 (574)
230 TIGR01988 Ubi-OHases Ubiquinon 98.7 8.5E-08 2.2E-12 64.1 8.3 117 7-123 1-199 (445)
231 PRK08243 4-hydroxybenzoate 3-m 98.7 1.1E-07 2.9E-12 63.4 8.7 33 5-37 2-34 (392)
232 TIGR00137 gid gid protein; Int 98.7 4.6E-08 1.2E-12 65.7 6.7 89 7-114 2-134 (444)
233 COG1252 Ndh NADH dehydrogenase 98.7 3.4E-08 8.6E-13 66.5 6.0 95 6-120 156-265 (405)
234 KOG2820 consensus 98.7 4E-08 1E-12 66.1 6.0 113 4-116 6-211 (399)
235 PRK05675 sdhA succinate dehydr 98.7 5E-07 1.3E-11 59.6 11.6 68 248-315 331-407 (570)
236 PRK12834 putative FAD-binding 98.7 4.2E-08 1.1E-12 65.9 5.4 38 5-42 2-42 (549)
237 TIGR01176 fum_red_Fp fumarate 98.7 9.5E-07 2.4E-11 58.0 12.2 55 264-319 357-419 (585)
238 TIGR02734 crtI_fam phytoene de 98.6 3.4E-08 8.8E-13 66.4 4.7 38 8-45 1-39 (526)
239 pfam00070 Pyr_redox Pyridine n 98.6 9.9E-08 2.5E-12 63.7 7.0 80 7-102 1-81 (82)
240 TIGR02028 ChlP geranylgeranyl 98.6 1.7E-07 4.3E-12 62.4 7.9 83 7-90 2-121 (401)
241 TIGR01377 soxA_mon sarcosine o 98.6 1.4E-07 3.5E-12 62.9 7.4 120 6-126 1-219 (401)
242 PRK12835 3-ketosteroid-delta-1 98.6 6.1E-08 1.5E-12 65.0 5.5 38 4-41 10-48 (584)
243 PRK06467 dihydrolipoamide dehy 98.6 2.8E-07 7.3E-12 61.1 8.5 98 6-120 175-277 (472)
244 PRK05335 tRNA (uracil-5-)-meth 98.6 7.1E-08 1.8E-12 64.6 4.2 45 270-316 323-368 (434)
245 PRK05329 anaerobic glycerol-3- 98.5 1.7E-07 4.3E-12 62.4 6.0 34 5-38 2-35 (425)
246 KOG2311 consensus 98.5 1.2E-07 3E-12 63.3 5.1 113 3-115 26-184 (679)
247 COG0578 GlpA Glycerol-3-phosph 98.5 5.4E-07 1.4E-11 59.4 8.5 40 1-40 8-47 (532)
248 TIGR02360 pbenz_hydroxyl 4-hyd 98.5 1.4E-07 3.7E-12 62.8 5.6 33 6-38 3-35 (393)
249 TIGR02053 MerA mercuric reduct 98.5 7E-08 1.8E-12 64.6 3.9 102 6-126 182-290 (494)
250 COG3349 Uncharacterized conser 98.5 1.4E-07 3.6E-12 62.8 5.4 39 6-44 1-40 (485)
251 PRK08294 phenol 2-monooxygenas 98.5 1.3E-07 3.2E-12 63.1 5.0 36 3-38 30-66 (634)
252 PRK02106 choline dehydrogenase 98.5 1.3E-07 3.4E-12 63.0 4.8 37 1-37 1-38 (555)
253 pfam00070 Pyr_redox Pyridine n 98.5 7.9E-09 2E-13 70.1 -1.8 66 148-213 1-71 (82)
254 PRK12837 3-ketosteroid-delta-1 98.5 1.8E-07 4.6E-12 62.2 5.1 37 4-41 8-45 (515)
255 PTZ00318 NADH dehydrogenase; P 98.5 2E-07 5.2E-12 61.9 5.3 92 7-119 181-286 (514)
256 TIGR03169 Nterm_to_SelD pyridi 98.5 7.8E-07 2E-11 58.5 7.8 94 5-119 145-245 (364)
257 TIGR02374 nitri_red_nirB nitri 98.5 1.1E-07 2.7E-12 63.6 3.1 103 1-119 137-252 (813)
258 KOG0685 consensus 98.5 4.5E-07 1.1E-11 59.9 6.3 48 1-48 17-66 (498)
259 PTZ00153 lipoamide dehydrogena 98.4 8.8E-07 2.2E-11 58.2 7.1 100 5-120 320-438 (673)
260 TIGR02733 desat_CrtD C-3',4' d 98.4 3.7E-07 9.4E-12 60.4 4.8 37 5-41 1-38 (499)
261 COG1231 Monoamine oxidase [Ami 98.4 5.8E-07 1.5E-11 59.2 5.8 44 4-47 6-50 (450)
262 COG0665 DadA Glycine/D-amino a 98.4 6E-07 1.5E-11 59.2 5.7 39 3-41 2-40 (387)
263 COG1232 HemY Protoporphyrinoge 98.4 6.8E-07 1.7E-11 58.9 5.8 41 6-46 1-44 (444)
264 KOG1298 consensus 98.4 1.4E-06 3.6E-11 57.0 7.4 116 1-116 41-207 (509)
265 PRK12416 protoporphyrinogen ox 98.4 1E-06 2.6E-11 57.8 6.3 41 6-46 2-49 (466)
266 PRK08255 salicylyl-CoA 5-hydro 98.3 1.8E-06 4.6E-11 56.4 6.9 77 6-83 1-118 (770)
267 KOG1336 consensus 98.3 4E-06 1E-10 54.3 7.4 105 4-123 212-319 (478)
268 TIGR00031 UDP-GALP_mutase UDP- 98.2 1.5E-06 3.9E-11 56.8 4.9 41 5-45 1-43 (390)
269 TIGR01424 gluta_reduc_2 glutat 98.2 1.6E-06 4.2E-11 56.6 4.2 104 4-126 184-291 (478)
270 PRK12809 putative oxidoreducta 98.1 1.8E-07 4.6E-12 62.2 -1.7 85 144-249 308-406 (639)
271 TIGR01789 lycopene_cycl lycope 98.1 1.6E-05 4.2E-10 50.8 8.0 122 7-133 1-161 (392)
272 PRK12810 gltD glutamate syntha 98.1 2.5E-07 6.3E-12 61.4 -1.5 86 145-251 142-242 (472)
273 COG3075 GlpB Anaerobic glycero 98.1 4.2E-06 1.1E-10 54.2 4.7 34 5-38 2-35 (421)
274 pfam01593 Amino_oxidase Flavin 98.1 7.5E-06 1.9E-10 52.8 5.7 30 15-44 1-31 (444)
275 TIGR01318 gltD_gamma_fam gluta 98.1 6.1E-07 1.6E-11 59.1 -0.1 63 144-206 141-217 (480)
276 TIGR01373 soxB sarcosine oxida 98.0 1.9E-05 4.9E-10 50.4 6.0 67 2-69 27-98 (407)
277 KOG2614 consensus 98.0 5.6E-05 1.4E-09 47.7 8.4 34 5-38 2-35 (420)
278 PRK12814 putative NADPH-depend 98.0 4.2E-07 1.1E-11 60.1 -2.6 33 5-37 323-356 (652)
279 COG0562 Glf UDP-galactopyranos 98.0 2.3E-05 5.9E-10 49.9 6.2 42 5-46 1-43 (374)
280 PRK13984 putative oxidoreducta 98.0 5E-07 1.3E-11 59.6 -2.4 86 144-250 281-380 (604)
281 PRK12771 putative glutamate sy 97.9 6E-07 1.5E-11 59.2 -2.1 33 5-37 267-300 (560)
282 PRK12831 putative oxidoreducta 97.9 7.4E-07 1.9E-11 58.6 -1.8 38 144-181 138-175 (464)
283 PRK12769 putative oxidoreducta 97.9 6.8E-07 1.7E-11 58.8 -2.2 84 145-249 326-423 (654)
284 PRK12778 putative bifunctional 97.9 9.6E-07 2.4E-11 58.0 -1.5 85 145-249 438-536 (760)
285 TIGR01292 TRX_reduct thioredox 97.9 4.4E-05 1.1E-09 48.3 6.9 103 4-125 150-260 (321)
286 COG3573 Predicted oxidoreducta 97.9 2.7E-05 6.9E-10 49.5 5.7 46 1-46 1-49 (552)
287 PRK10262 thioredoxin reductase 97.9 7.4E-05 1.9E-09 47.0 7.9 99 4-120 145-251 (321)
288 TIGR01316 gltA glutamate synth 97.9 5.8E-05 1.5E-09 47.6 7.3 120 107-251 104-243 (462)
289 TIGR01984 UbiH 2-polyprenyl-6- 97.9 4.5E-05 1.2E-09 48.2 6.5 34 7-40 1-39 (425)
290 COG0493 GltD NADPH-dependent g 97.9 5.4E-06 1.4E-10 53.6 1.7 174 3-205 3-196 (457)
291 pfam07992 Pyr_redox_2 Pyridine 97.8 8.9E-05 2.3E-09 46.5 7.6 92 148-253 1-110 (277)
292 KOG4254 consensus 97.8 2E-05 5E-10 50.3 4.3 41 2-42 11-52 (561)
293 KOG2404 consensus 97.8 7E-05 1.8E-09 47.1 7.1 35 7-41 11-46 (477)
294 TIGR03140 AhpF alkyl hydropero 97.8 0.0001 2.6E-09 46.2 7.8 93 148-252 214-325 (515)
295 TIGR01811 sdhA_Bsu succinate d 97.8 7.7E-05 2E-09 46.9 7.1 28 8-35 1-28 (620)
296 TIGR01421 gluta_reduc_1 glutat 97.8 5.9E-05 1.5E-09 47.5 6.4 100 6-121 182-292 (475)
297 KOG1276 consensus 97.8 4.5E-05 1.1E-09 48.2 5.4 43 3-45 9-54 (491)
298 TIGR03143 AhpF_homolog putativ 97.8 0.00015 3.9E-09 45.1 7.9 96 4-120 142-249 (555)
299 COG2907 Predicted NAD/FAD-bind 97.7 3.7E-05 9.5E-10 48.7 4.1 36 6-42 9-45 (447)
300 PRK13339 malate:quinone oxidor 97.7 5.2E-05 1.3E-09 47.9 4.5 38 1-38 1-41 (497)
301 PRK12770 putative glutamate sy 97.7 0.00011 2.7E-09 46.0 5.8 36 145-180 16-51 (350)
302 COG2303 BetA Choline dehydroge 97.7 6.9E-05 1.7E-09 47.2 4.6 36 2-37 4-39 (542)
303 TIGR03315 Se_ygfK putative sel 97.6 2.7E-06 6.8E-11 55.4 -2.9 33 5-37 666-700 (1012)
304 KOG0042 consensus 97.6 2E-05 5.2E-10 50.2 1.6 40 1-40 63-102 (680)
305 COG1148 HdrA Heterodisulfide r 97.6 1.1E-05 2.8E-10 51.8 -0.1 93 5-101 124-218 (622)
306 pfam06039 Mqo Malate:quinone o 97.6 0.00016 4E-09 45.1 5.8 36 3-38 2-39 (489)
307 COG0492 TrxB Thioredoxin reduc 97.6 0.00048 1.2E-08 42.2 7.9 95 4-119 142-240 (305)
308 PRK11749 putative oxidoreducta 97.5 0.001 2.6E-08 40.4 9.3 85 144-249 138-236 (460)
309 KOG1335 consensus 97.5 0.00013 3.4E-09 45.5 4.7 98 5-119 211-316 (506)
310 KOG2495 consensus 97.5 7.2E-05 1.8E-09 47.0 3.3 96 7-120 220-332 (491)
311 PRK12775 putative trifunctiona 97.5 0.0011 2.7E-08 40.2 9.0 59 147-205 433-505 (993)
312 TIGR01438 TGR thioredoxin and 97.5 0.00043 1.1E-08 42.5 6.7 94 7-117 190-294 (513)
313 PRK09853 putative selenate red 97.4 7.2E-06 1.8E-10 52.9 -2.8 33 5-37 679-713 (1032)
314 COG1251 NirB NAD(P)H-nitrite r 97.4 0.00026 6.7E-09 43.8 5.0 101 4-119 144-245 (793)
315 TIGR02730 carot_isom carotene 97.4 0.00019 4.8E-09 44.6 3.7 36 6-41 1-37 (506)
316 PRK04176 ribulose-1,5-biphosph 97.3 0.00016 4.2E-09 44.9 2.8 165 145-315 24-256 (257)
317 KOG0399 consensus 97.3 3.5E-05 8.8E-10 48.9 -0.8 64 143-206 1782-1859(2142)
318 TIGR03197 MnmC_Cterm tRNA U-34 97.3 0.00064 1.6E-08 41.5 5.6 41 76-116 148-189 (381)
319 KOG1346 consensus 97.2 0.00036 9.3E-09 42.9 4.0 99 5-119 347-451 (659)
320 PRK05257 malate:quinone oxidor 97.2 0.00083 2.1E-08 40.8 5.7 38 1-38 5-44 (499)
321 TIGR01989 COQ6 Ubiquinone bios 97.2 0.00039 9.8E-09 42.8 4.0 31 6-36 1-35 (481)
322 COG1206 Gid NAD(FAD)-utilizing 97.2 0.00091 2.3E-08 40.6 5.9 31 6-36 4-34 (439)
323 PRK06183 mhpA 3-(3-hydroxyphen 97.2 0.00011 2.9E-09 45.9 1.0 12 155-166 308-319 (554)
324 KOG0405 consensus 97.1 0.00055 1.4E-08 41.9 4.1 102 3-120 187-290 (478)
325 TIGR02731 phytoene_desat phyto 97.1 0.00063 1.6E-08 41.5 4.0 38 7-44 1-39 (454)
326 pfam00743 FMO-like Flavin-bind 97.1 0.0044 1.1E-07 36.6 8.1 34 4-37 182-215 (532)
327 PRK06126 hypothetical protein; 97.0 0.00012 3E-09 45.8 -0.3 10 279-288 303-312 (545)
328 TIGR02061 aprA adenylylsulfate 97.0 0.00067 1.7E-08 41.4 3.4 45 273-317 437-483 (651)
329 KOG2960 consensus 97.0 0.00018 4.6E-09 44.7 0.3 38 5-42 76-116 (328)
330 TIGR02732 zeta_caro_desat caro 96.9 0.0014 3.4E-08 39.6 4.4 38 7-44 1-39 (474)
331 PRK12779 putative bifunctional 96.9 0.0086 2.2E-07 34.9 8.2 109 4-127 446-575 (944)
332 pfam01134 GIDA Glucose inhibit 96.9 0.00016 4.1E-09 45.0 -0.8 42 272-315 347-389 (391)
333 KOG2844 consensus 96.8 0.0051 1.3E-07 36.2 6.8 34 5-38 39-73 (856)
334 TIGR02061 aprA adenylylsulfate 96.8 0.00048 1.2E-08 42.2 1.2 32 7-38 1-36 (651)
335 PRK02006 murD UDP-N-acetylmura 96.7 0.0031 7.9E-08 37.5 5.2 35 3-37 5-39 (501)
336 PRK08306 dipicolinate synthase 96.7 0.00066 1.7E-08 41.4 1.7 38 144-181 150-187 (296)
337 PRK06249 2-dehydropantoate 2-r 96.7 0.0041 1E-07 36.8 5.4 38 1-38 1-38 (313)
338 KOG2853 consensus 96.6 0.0022 5.5E-08 38.4 3.7 36 4-39 85-124 (509)
339 PRK01710 murD UDP-N-acetylmura 96.6 0.0075 1.9E-07 35.3 6.0 35 4-38 13-47 (458)
340 PRK06847 hypothetical protein; 96.4 0.00042 1.1E-08 42.6 -1.0 12 278-289 281-292 (375)
341 PRK07208 hypothetical protein; 96.4 0.00043 1.1E-08 42.5 -0.9 38 273-310 415-452 (474)
342 pfam01262 AlaDh_PNT_C Alanine 96.4 0.0068 1.7E-07 35.5 4.8 34 5-38 20-53 (150)
343 TIGR00136 gidA glucose-inhibit 96.4 0.0041 1.1E-07 36.8 3.7 111 6-116 1-160 (630)
344 TIGR01369 CPSaseII_lrg carbamo 96.3 0.011 2.9E-07 34.2 5.8 83 6-91 7-126 (1089)
345 PRK05868 hypothetical protein; 96.3 0.00058 1.5E-08 41.7 -0.9 13 277-289 280-292 (372)
346 PRK04308 murD UDP-N-acetylmura 96.2 0.0098 2.5E-07 34.6 5.0 37 1-37 1-37 (445)
347 COG3634 AhpF Alkyl hydroperoxi 96.2 0.017 4.2E-07 33.2 6.1 28 148-175 213-240 (520)
348 PRK08229 2-dehydropantoate 2-r 96.2 0.016 4E-07 33.4 6.0 32 6-37 3-34 (341)
349 TIGR03378 glycerol3P_GlpB glyc 96.2 0.0051 1.3E-07 36.2 3.5 108 192-309 273-418 (419)
350 PRK02472 murD UDP-N-acetylmura 96.2 0.0094 2.4E-07 34.7 4.8 35 4-38 8-42 (450)
351 PRK01438 murD UDP-N-acetylmura 96.2 0.0095 2.4E-07 34.6 4.8 33 4-36 13-45 (481)
352 PRK01438 murD UDP-N-acetylmura 96.2 0.00075 1.9E-08 41.1 -0.9 29 4-32 36-66 (481)
353 KOG2665 consensus 96.2 0.0044 1.1E-07 36.6 3.0 37 2-38 45-83 (453)
354 PRK05329 anaerobic glycerol-3- 96.1 0.0057 1.5E-07 35.9 3.5 109 192-310 272-418 (425)
355 TIGR02356 adenyl_thiF thiazole 96.1 0.0093 2.4E-07 34.7 4.5 35 5-39 21-56 (210)
356 KOG3855 consensus 96.1 0.0063 1.6E-07 35.7 3.6 35 3-37 34-72 (481)
357 PRK13977 myosin-cross-reactive 96.1 0.013 3.4E-07 33.8 5.3 38 4-41 21-63 (577)
358 TIGR01763 MalateDH_bact malate 96.1 0.017 4.2E-07 33.2 5.8 90 5-126 1-92 (308)
359 PRK00141 murD UDP-N-acetylmura 96.1 0.011 2.9E-07 34.2 4.8 33 6-38 18-50 (476)
360 COG1004 Ugd Predicted UDP-gluc 96.1 0.011 2.8E-07 34.3 4.7 33 6-38 1-33 (414)
361 PRK12834 putative FAD-binding 96.1 0.01 2.6E-07 34.4 4.5 53 258-313 486-549 (549)
362 PRK00066 ldh L-lactate dehydro 96.0 0.019 4.7E-07 33.0 5.5 38 1-38 2-41 (315)
363 KOG2852 consensus 95.9 0.0038 9.6E-08 37.0 1.7 37 3-39 8-50 (380)
364 COG0569 TrkA K+ transport syst 95.9 0.016 4E-07 33.4 4.7 33 6-38 1-33 (225)
365 PRK01390 murD UDP-N-acetylmura 95.8 0.018 4.5E-07 33.1 4.9 34 4-37 8-41 (457)
366 PRK09424 pntA NAD(P) transhydr 95.8 0.013 3.2E-07 33.9 4.1 30 6-35 166-195 (510)
367 PRK03806 murD UDP-N-acetylmura 95.8 0.019 4.9E-07 32.9 5.0 34 4-37 5-38 (438)
368 PRK11883 protoporphyrinogen ox 95.7 0.0014 3.5E-08 39.6 -1.1 44 73-116 230-274 (452)
369 PRK02472 murD UDP-N-acetylmura 95.7 0.0015 3.8E-08 39.3 -0.9 11 22-32 50-60 (450)
370 PRK02705 murD UDP-N-acetylmura 95.7 0.025 6.3E-07 32.2 5.3 31 8-38 3-33 (459)
371 PRK12409 D-amino acid dehydrog 95.7 0.0013 3.3E-08 39.7 -1.4 59 59-117 194-258 (410)
372 KOG3923 consensus 95.7 0.068 1.7E-06 29.7 7.4 30 6-35 4-40 (342)
373 PRK08163 salicylate hydroxylas 95.7 0.0017 4.4E-08 39.0 -0.8 13 277-289 284-296 (396)
374 KOG4716 consensus 95.6 0.015 3.7E-07 33.6 3.8 92 7-117 200-300 (503)
375 PRK06475 salicylate hydroxylas 95.6 0.0017 4.3E-08 39.0 -1.0 13 277-289 290-302 (400)
376 PRK03369 murD UDP-N-acetylmura 95.6 0.024 6.2E-07 32.3 4.9 35 3-37 10-44 (487)
377 PRK06130 3-hydroxybutyryl-CoA 95.6 0.029 7.4E-07 31.8 5.3 38 1-38 1-38 (310)
378 KOG1238 consensus 95.6 0.016 4.1E-07 33.3 3.9 35 3-37 55-90 (623)
379 PRK07588 hypothetical protein; 95.6 0.0019 4.8E-08 38.7 -0.9 13 277-289 277-289 (391)
380 PRK06753 hypothetical protein; 95.6 0.0019 4.7E-08 38.8 -1.0 13 277-289 268-280 (373)
381 PRK05335 tRNA (uracil-5-)-meth 95.6 0.002 5E-08 38.6 -0.9 32 5-36 3-34 (434)
382 PRK05192 tRNA uridine 5-carbox 95.5 0.0015 3.9E-08 39.3 -1.5 43 272-316 354-397 (621)
383 pfam06100 Strep_67kDa_ant Stre 95.5 0.032 8.1E-07 31.6 5.2 38 5-42 2-44 (500)
384 PRK08274 tricarballylate dehyd 95.5 0.026 6.7E-07 32.1 4.7 52 258-312 396-455 (456)
385 TIGR00292 TIGR00292 thiazole b 95.4 0.0026 6.6E-08 38.0 -0.7 36 144-179 19-56 (283)
386 pfam00996 GDI GDP dissociation 95.4 0.059 1.5E-06 30.0 6.2 41 1-42 1-42 (439)
387 PRK08293 3-hydroxybutyryl-CoA 95.4 0.034 8.7E-07 31.4 4.9 36 1-38 1-36 (288)
388 PRK07045 putative monooxygenas 95.3 0.0027 6.8E-08 37.9 -0.9 13 277-289 283-295 (388)
389 pfam00670 AdoHcyase_NAD S-aden 95.3 0.052 1.3E-06 30.4 5.7 33 6-38 24-56 (162)
390 PRK07530 3-hydroxybutyryl-CoA 95.3 0.044 1.1E-06 30.8 5.3 37 1-38 1-37 (292)
391 PRK12843 putative FAD-binding 95.2 0.043 1.1E-06 30.8 5.1 56 258-316 510-573 (576)
392 TIGR02023 BchP-ChlP geranylger 95.2 0.0035 9E-08 37.2 -0.6 31 148-178 2-32 (408)
393 TIGR03467 HpnE squalene-associ 95.2 0.0027 7E-08 37.8 -1.2 50 66-115 212-263 (430)
394 PRK03803 murD UDP-N-acetylmura 95.2 0.033 8.5E-07 31.5 4.4 35 3-37 5-39 (448)
395 PRK01747 mnmC 5-methylaminomet 95.2 0.0026 6.6E-08 37.9 -1.3 35 145-179 255-289 (660)
396 pfam03721 UDPG_MGDP_dh_N UDP-g 95.1 0.04 1E-06 31.0 4.7 33 6-38 1-33 (185)
397 PRK07573 sdhA succinate dehydr 95.1 0.031 7.9E-07 31.7 4.1 61 57-117 159-230 (638)
398 PRK07236 hypothetical protein; 95.1 0.0034 8.6E-08 37.3 -0.8 13 277-289 303-315 (386)
399 pfam02737 3HCDH_N 3-hydroxyacy 95.1 0.039 1E-06 31.0 4.6 32 7-38 1-32 (180)
400 PRK00711 D-amino acid dehydrog 95.1 0.0028 7.1E-08 37.8 -1.4 56 60-116 199-256 (416)
401 PRK05808 3-hydroxybutyryl-CoA 95.1 0.046 1.2E-06 30.6 4.9 33 6-38 4-36 (282)
402 PRK06035 3-hydroxyacyl-CoA deh 95.0 0.048 1.2E-06 30.5 4.9 33 6-38 4-36 (291)
403 PRK09496 trkA potassium transp 95.0 0.047 1.2E-06 30.6 4.8 32 7-38 2-33 (455)
404 KOG0029 consensus 95.0 0.0034 8.6E-08 37.3 -1.1 41 274-314 418-460 (501)
405 PRK07121 hypothetical protein; 95.0 0.046 1.2E-06 30.6 4.6 56 60-116 175-238 (491)
406 PRK00683 murD UDP-N-acetylmura 94.9 0.04 1E-06 31.0 4.3 32 6-37 4-35 (418)
407 PRK11064 wecC UDP-N-acetyl-D-m 94.9 0.05 1.3E-06 30.5 4.7 33 6-38 4-36 (415)
408 TIGR00275 TIGR00275 conserved 94.9 0.057 1.5E-06 30.1 4.9 106 9-115 1-165 (411)
409 PRK07538 hypothetical protein; 94.9 0.004 1E-07 36.9 -1.0 13 277-289 295-307 (413)
410 pfam01946 Thi4 Thi4 family. Th 94.9 0.0043 1.1E-07 36.7 -0.9 36 146-181 17-52 (229)
411 TIGR00692 tdh L-threonine 3-de 94.9 0.04 1E-06 31.0 4.1 69 106-178 120-195 (341)
412 PRK07660 consensus 94.8 0.059 1.5E-06 30.0 4.9 33 6-38 4-36 (283)
413 PRK07411 hypothetical protein; 94.8 0.075 1.9E-06 29.4 5.4 34 5-38 38-72 (390)
414 pfam01210 NAD_Gly3P_dh_N NAD-d 94.8 0.062 1.6E-06 29.9 5.0 33 6-38 1-33 (159)
415 pfam01494 FAD_binding_3 FAD bi 94.7 0.0048 1.2E-07 36.4 -0.9 12 278-289 283-294 (349)
416 PRK06185 hypothetical protein; 94.7 0.0046 1.2E-07 36.5 -1.0 37 277-313 282-322 (409)
417 PRK08243 4-hydroxybenzoate 3-m 94.7 0.0041 1.1E-07 36.8 -1.2 55 62-116 103-162 (392)
418 TIGR03366 HpnZ_proposed putati 94.7 0.066 1.7E-06 29.8 4.9 36 144-179 119-155 (280)
419 PRK07688 thiamine/molybdopteri 94.7 0.079 2E-06 29.3 5.3 35 4-38 23-58 (339)
420 pfam03486 HI0933_like HI0933-l 94.7 0.0044 1.1E-07 36.6 -1.1 37 270-307 362-404 (405)
421 PRK06522 2-dehydropantoate 2-r 94.7 0.062 1.6E-06 29.9 4.7 33 6-38 1-33 (307)
422 PRK09260 3-hydroxybutyryl-CoA 94.6 0.068 1.7E-06 29.7 4.8 33 6-38 3-35 (289)
423 PRK02006 murD UDP-N-acetylmura 94.6 0.0053 1.4E-07 36.1 -0.9 11 266-276 367-377 (501)
424 pfam00899 ThiF ThiF family. Th 94.6 0.14 3.5E-06 27.9 6.3 33 6-38 2-35 (134)
425 PRK06834 hypothetical protein; 94.5 0.0055 1.4E-07 36.0 -1.0 11 278-288 264-274 (488)
426 COG3349 Uncharacterized conser 94.5 0.0059 1.5E-07 35.9 -0.9 44 273-316 422-466 (485)
427 PRK07878 molybdopterin biosynt 94.5 0.084 2.1E-06 29.1 5.0 35 5-39 42-77 (392)
428 PRK01368 murD UDP-N-acetylmura 94.4 0.071 1.8E-06 29.6 4.5 34 1-35 1-35 (450)
429 PRK12416 protoporphyrinogen ox 94.4 0.0057 1.4E-07 36.0 -1.2 41 274-316 424-464 (466)
430 PRK08762 molybdopterin biosynt 94.4 0.1 2.6E-06 28.7 5.2 34 144-177 136-170 (379)
431 PRK05294 carB carbamoyl phosph 94.4 0.19 4.8E-06 27.1 6.6 32 6-37 8-50 (1063)
432 PRK09117 consensus 94.4 0.088 2.2E-06 29.0 4.9 33 6-38 3-35 (282)
433 TIGR03219 salicylate_mono sali 94.4 0.0061 1.6E-07 35.8 -1.1 12 278-289 299-310 (414)
434 PRK01710 murD UDP-N-acetylmura 94.3 0.0065 1.7E-07 35.6 -1.0 12 265-276 325-336 (458)
435 KOG1399 consensus 94.3 0.0069 1.8E-07 35.5 -0.9 32 4-35 185-216 (448)
436 PRK08244 hypothetical protein; 94.3 0.0068 1.7E-07 35.5 -0.9 10 279-288 272-281 (494)
437 PRK12835 3-ketosteroid-delta-1 94.3 0.073 1.9E-06 29.5 4.3 53 258-313 509-569 (584)
438 PRK07233 hypothetical protein; 94.3 0.04 1E-06 31.0 3.0 55 62-116 197-252 (430)
439 PRK08773 2-octaprenyl-3-methyl 94.2 0.0067 1.7E-07 35.5 -1.1 12 278-289 281-292 (392)
440 PRK07819 3-hydroxybutyryl-CoA 94.2 0.094 2.4E-06 28.8 4.8 33 6-38 3-35 (284)
441 PRK12815 carB carbamoyl phosph 94.2 0.11 2.7E-06 28.6 5.0 38 1-38 1-51 (1068)
442 PRK06129 3-hydroxyacyl-CoA deh 94.2 0.098 2.5E-06 28.7 4.8 33 6-38 3-35 (308)
443 PRK03369 murD UDP-N-acetylmura 94.1 0.0096 2.5E-07 34.6 -0.4 14 4-17 34-47 (487)
444 TIGR03026 NDP-sugDHase nucleot 94.1 0.092 2.3E-06 28.9 4.6 33 6-38 1-33 (411)
445 COG1635 THI4 Ribulose 1,5-bisp 94.1 0.0092 2.3E-07 34.7 -0.5 165 145-315 29-261 (262)
446 PRK04308 murD UDP-N-acetylmura 94.1 0.011 2.8E-07 34.3 -0.2 13 265-277 318-330 (445)
447 TIGR03451 mycoS_dep_FDH mycoth 94.1 0.11 2.7E-06 28.5 4.9 37 143-179 174-211 (358)
448 COG0654 UbiH 2-polyprenyl-6-me 94.1 0.0078 2E-07 35.1 -0.9 12 278-289 277-288 (387)
449 TIGR03201 dearomat_had 6-hydro 94.0 0.12 3E-06 28.3 4.9 37 143-179 164-200 (349)
450 COG0686 Ald Alanine dehydrogen 94.0 0.056 1.4E-06 30.1 3.3 34 146-179 168-201 (371)
451 COG1233 Phytoene dehydrogenase 93.9 0.009 2.3E-07 34.8 -0.9 54 62-115 224-279 (487)
452 PRK09126 hypothetical protein; 93.9 0.0083 2.1E-07 35.0 -1.1 12 278-289 279-290 (392)
453 PRK05600 thiamine biosynthesis 93.9 0.081 2.1E-06 29.2 3.9 35 5-39 41-76 (370)
454 PRK12862 malic enzyme; Reviewe 93.9 0.12 3E-06 28.3 4.7 34 5-38 192-228 (761)
455 PRK07066 3-hydroxybutyryl-CoA 93.8 0.14 3.6E-06 27.8 5.0 37 1-38 4-40 (321)
456 PRK08294 phenol 2-monooxygenas 93.8 0.0092 2.4E-07 34.7 -1.0 16 102-117 195-210 (634)
457 PRK08774 consensus 93.8 0.0093 2.4E-07 34.7 -1.0 59 59-117 106-170 (402)
458 PRK07608 hypothetical protein; 93.8 0.0093 2.4E-07 34.7 -1.0 13 277-289 279-291 (389)
459 cd00757 ThiF_MoeB_HesA_family 93.8 0.15 3.7E-06 27.7 5.0 35 4-38 20-55 (228)
460 COG3486 IucD Lysine/ornithine 93.8 0.11 2.8E-06 28.5 4.4 46 76-121 292-344 (436)
461 TIGR02279 PaaC-3OHAcCoADH 3-hy 93.7 0.089 2.3E-06 29.0 3.9 37 1-37 1-37 (508)
462 PRK05562 precorrin-2 dehydroge 93.7 0.097 2.5E-06 28.8 4.1 34 2-35 21-54 (222)
463 PRK07232 malic enzyme; Reviewe 93.7 0.13 3.3E-06 28.0 4.7 35 4-38 185-222 (753)
464 pfam01266 DAO FAD dependent ox 93.7 0.0091 2.3E-07 34.8 -1.2 56 60-116 145-201 (309)
465 PRK07364 2-octaprenyl-6-methox 93.7 0.0097 2.5E-07 34.6 -1.2 12 278-289 292-303 (413)
466 PRK12815 carB carbamoyl phosph 93.6 0.28 7.1E-06 26.1 6.2 34 3-36 552-596 (1068)
467 TIGR01372 soxA sarcosine oxida 93.6 0.025 6.3E-07 32.2 0.9 100 148-249 178-299 (1026)
468 PRK08020 ubiF 2-octaprenyl-3-m 93.6 0.011 2.8E-07 34.3 -1.0 13 277-289 279-291 (391)
469 PRK12921 2-dehydropantoate 2-r 93.5 0.15 3.8E-06 27.7 4.7 32 6-37 1-32 (306)
470 PRK10015 hypothetical protein; 93.5 0.011 2.9E-07 34.2 -1.0 40 275-314 291-336 (429)
471 COG0281 SfcA Malic enzyme [Ene 93.5 0.15 3.9E-06 27.6 4.7 37 144-180 197-236 (432)
472 PRK05708 2-dehydropantoate 2-r 93.4 0.15 3.9E-06 27.6 4.7 32 6-37 3-34 (305)
473 PTZ00188 adrenodoxin reductase 93.4 0.011 2.9E-07 34.2 -1.1 16 7-26 199-214 (506)
474 PRK05597 molybdopterin biosynt 93.4 0.15 3.9E-06 27.6 4.7 35 5-39 28-63 (355)
475 cd05293 LDH_1 A subgroup of L- 93.4 0.21 5.3E-06 26.8 5.3 35 4-38 2-38 (312)
476 PRK10157 putative oxidoreducta 93.4 0.012 3.1E-07 34.0 -1.0 39 275-313 291-335 (428)
477 pfam02558 ApbA Ketopantoate re 93.4 0.13 3.4E-06 27.9 4.3 31 8-38 1-31 (150)
478 PRK08849 2-octaprenyl-3-methyl 93.3 0.012 3.1E-07 34.0 -1.1 12 278-289 278-289 (384)
479 PRK11259 solA N-methyltryptoph 93.3 0.011 2.8E-07 34.3 -1.3 30 277-309 329-358 (377)
480 PRK07531 bifunctional 3-hydrox 93.3 0.16 4.2E-06 27.4 4.6 32 6-37 3-34 (489)
481 PRK05294 carB carbamoyl phosph 93.3 0.28 7.1E-06 26.1 5.8 34 3-36 551-595 (1063)
482 COG2081 Predicted flavoprotein 93.3 0.013 3.4E-07 33.8 -0.9 44 270-314 359-408 (408)
483 PRK09880 L-idonate 5-dehydroge 93.3 0.16 4.1E-06 27.5 4.6 36 144-179 168-204 (343)
484 PRK07190 hypothetical protein; 93.3 0.013 3.4E-07 33.8 -1.0 11 279-289 275-285 (480)
485 PRK12844 3-ketosteroid-delta-1 93.2 0.15 3.8E-06 27.7 4.4 57 60-116 206-268 (552)
486 cd01487 E1_ThiF_like E1_ThiF_l 93.2 0.19 4.7E-06 27.1 4.8 33 7-39 1-34 (174)
487 PRK08013 hypothetical protein; 93.2 0.014 3.6E-07 33.7 -0.9 12 278-289 281-292 (400)
488 PRK08223 hypothetical protein; 93.1 0.27 6.9E-06 26.2 5.6 36 4-39 26-62 (287)
489 PRK07494 2-octaprenyl-6-methox 93.1 0.014 3.6E-07 33.6 -1.0 12 278-289 277-288 (386)
490 TIGR01369 CPSaseII_lrg carbamo 93.0 0.16 4.2E-06 27.4 4.3 31 5-35 573-614 (1089)
491 COG0644 FixC Dehydrogenases (f 93.0 0.016 4E-07 33.4 -1.0 39 276-314 266-308 (396)
492 TIGR02734 crtI_fam phytoene de 93.0 0.014 3.7E-07 33.6 -1.1 90 6-116 192-292 (526)
493 PRK05714 2-octaprenyl-3-methyl 93.0 0.015 3.7E-07 33.6 -1.1 12 278-289 284-295 (405)
494 TIGR02028 ChlP geranylgeranyl 93.0 0.021 5.4E-07 32.6 -0.3 74 238-311 216-309 (401)
495 PRK06617 2-octaprenyl-6-methox 92.9 0.014 3.6E-07 33.7 -1.2 58 59-117 101-160 (374)
496 PRK12475 thiamine/molybdopteri 92.9 0.21 5.4E-06 26.8 4.7 35 4-38 23-58 (337)
497 TIGR02853 spore_dpaA dipicolin 92.8 0.13 3.2E-06 28.1 3.5 182 6-209 2-223 (288)
498 COG0771 MurD UDP-N-acetylmuram 92.8 0.044 1.1E-06 30.8 1.1 83 144-256 5-87 (448)
499 TIGR03364 HpnW_proposed FAD de 92.8 0.015 3.8E-07 33.5 -1.3 52 60-116 143-196 (365)
500 PRK09496 trkA potassium transp 92.7 0.2 5.1E-06 26.9 4.4 34 145-179 231-264 (455)
No 1
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=594.70 Aligned_cols=301 Identities=50% Similarity=0.826 Sum_probs=290.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC---CEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC-
Q ss_conf 51999989777999999999869959999678877---56875010078774777789789998664323200232221-
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG---GQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQ- 81 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~G---G~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~- 81 (321)
|||+|||||||||+||+|++|.+++++|||+.++| |||+.+..++|||||++.++|++|+++|++|+.+|+.+++.
T Consensus 1 ~DviIIGaGPAGlTAAIYa~Ra~l~~l~~eg~~~G~aGGql~~T~~vENYPGf~e~i~G~~L~~~M~~Qa~~fG~~~~~G 80 (321)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLLIEGMEPGIAGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAKKFGAEIIYG 80 (321)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEC
T ss_conf 92899847867888999988746727898357777455533322065136868887662889999999998706736626
Q ss_pred EEEEECCCCCC-----CCCCCCCCCCCCCCCEECCCCCCCCEEEEEC-CCCCCCEEECCCCCCCCC--CCCCCCCEEEEE
Q ss_conf 13320112222-----2222222222221000014776642024652-774332021012111111--111221000010
Q gi|254780283|r 82 DLVVSVDLDRH-----PFLVETQSGDLWHADAVVIATGSEVKWLRLE-SEKKFQGFGVSACATCDG--FFYKNKDVIVVG 153 (321)
Q Consensus 82 ~~V~~i~~~~~-----~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ip-G~~~~~~~~v~~~~~~d~--~~~~~k~v~ViG 153 (321)
..|..|++.++ +|.|.+. ++|++|+||||||+.+|++.|| |+++|++|||+||++||+ ++||||+|+|||
T Consensus 81 ~~v~~v~~~~~~yE~~~F~~~~~--~~y~a~avIiAtGa~~r~lg~~kGE~ef~GrGVSyCA~CDGA~~ffk~K~V~VvG 158 (321)
T TIGR01292 81 EEVIRVDKSDRAYESDPFKVKTG--KEYTAKAVIIATGAEARKLGIPKGEDEFLGRGVSYCATCDGASPFFKNKEVAVVG 158 (321)
T ss_pred CEEEEEECCCCCCCCCEEEEEEC--CEEEEEEEEEECCCHHHHCCCCCCHHHHCCCCEEEEEHHCCCCHHHCCCEEEEEC
T ss_conf 70568633788436610389717--5688658999138715423788664553268666722310540120598899987
Q ss_pred CCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 255654310121013332223443433221111211223554--433222231121148643334444433314203210
Q gi|254780283|r 154 GGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQS--NIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKE 231 (321)
Q Consensus 154 gG~~g~e~A~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~~~~--~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~ 231 (321)
|||+|+|.|.+|++++++|||||||+.|||++.+++|+++.+ +|+++||+.|+||.|+... .+++|+++|.++
T Consensus 159 GGdsA~eEA~yL~~~a~kV~lvHRRd~fRA~k~~~~r~~~~~eG~I~~l~n~~v~Ei~G~~~~-----~V~~v~i~N~~t 233 (321)
T TIGR01292 159 GGDSALEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLKKNPEGKIEFLWNSTVEEIVGDNSK-----KVESVKIKNTVT 233 (321)
T ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHCCCCCEEEECCCEEEEEECCCCE-----EEEEEEEEECCC
T ss_conf 982488888999853876799977986363289998998378987899648689999617831-----553358996238
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCC--CCEECCCCEEEECC---CCCCCCCCEEEECCCCCC-CHHHHHHHHHHHHHH
Q ss_conf 000011222211123223565677425--61806997990088---855478982897012688-445678999979999
Q gi|254780283|r 232 GNFFERNVDGIFIAIGYKPNTKIFRHQ--LKMTNTNYIWTMPD---STATSIPGIFAAGDVADE-RYRQAITAAAMGCMA 305 (321)
Q Consensus 232 g~~~~i~~D~vi~a~G~~pn~~~~~~~--~~~~~~g~i~~~~~---~~~Ts~p~Iya~GDv~~~-~~~~~~~A~~~G~~A 305 (321)
++..++++|.||+++|..||+++++++ +++|+.|+|++++. +|+||+|||||||||.+. .+||+++|+++|++|
T Consensus 234 ~e~~~l~vdGvF~aIG~~P~t~~~~~~G~~~~D~~GyI~t~~~~Gn~~~Tsv~GvFAAGDv~~kW~~rQ~vTAag~G~~A 313 (321)
T TIGR01292 234 GEEEELKVDGVFIAIGHEPNTELLKGLGLLELDEGGYIVTDEGLGNTMRTSVPGVFAAGDVRDKWGFRQAVTAAGDGCIA 313 (321)
T ss_pred CEEEEEEECEEEEEECCCCCHHHHHCCCCEEECCCCCEEECCCCCCEEECCCCCEEEEEEEECCCCCEEEEEEECHHHHH
T ss_conf 84889984447898412032057650783467699868861754861230668689730440688613767870006899
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780283|r 306 ALEVEHYL 313 (321)
Q Consensus 306 a~~i~~yl 313 (321)
|.++.+||
T Consensus 314 A~~a~~yL 321 (321)
T TIGR01292 314 ALSAERYL 321 (321)
T ss_pred HHHHHHHC
T ss_conf 99998709
No 2
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=100.00 E-value=0 Score=517.54 Aligned_cols=303 Identities=34% Similarity=0.604 Sum_probs=285.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
...|||+|||||||||+||+|++|.|++++|++. +.|||+..+..++||||++. ++|++|++++++|+++|+++++..
T Consensus 210 ~~~YDviIIGgGPAGlsAAIYaaR~gl~t~vi~~-~~GGqv~~t~~IeNypG~~~-i~G~eL~~~~~~qa~~~gv~~~~~ 287 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE-RIGGQVKDTVGIENLISVPY-TTGSQLAANLEEHIKQYPIDLMEN 287 (515)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCCEECCCEEECCCCCC-CCHHHHHHHHHHHHHHCCCEEEEC
T ss_conf 7888889989678999999999977997699924-87753130346004489877-757999999999999749689913
Q ss_pred -EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCC
Q ss_conf -3320112222222222222222100001477664202465277433202101211111111122100001025565431
Q gi|254780283|r 83 -LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEE 161 (321)
Q Consensus 83 -~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~ 161 (321)
.|..++..+..|.+.+.+|+.+++|+||||||+.||.+++||+++|.+++++||++||+++|+||+|+|||||++|+|.
T Consensus 288 ~~v~~i~~~~~~~~v~~~~g~~~~aktVIiATGa~~r~l~vpGE~e~~GkGVsYCa~CDG~~fkgK~VaVvGGGnsA~ee 367 (515)
T TIGR03140 288 QRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEA 367 (515)
T ss_pred CEEEEEECCCCCEEEEECCCCEEEECEEEECCCCCCCCCCCCCHHHCCCCCCCEECCCCCHHCCCCEEEEECCCHHHHHH
T ss_conf 36999972798189998799899939799956987355899967870387401001078101189769998997799999
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 01210133322234434332211112112235544332222311211486433344444333142032100000112222
Q gi|254780283|r 162 ALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDG 241 (321)
Q Consensus 162 A~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~ 241 (321)
|.+|++++++||+++|++.|++++.+++++.+.++|++++++.++++.|+.. .++++.+++..+++.+++++|.
T Consensus 368 Al~La~~a~~Vtli~r~~~~ra~~~l~~kl~~~~nI~i~~~~~v~eI~Gdg~------~v~~v~~~d~~tge~~~l~vdG 441 (515)
T TIGR03140 368 AIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPNVDILTSAQTTEIVGDGD------KVTGIRYQDRNSGEEKQLDLDG 441 (515)
T ss_pred HHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCEEEEEECCCC------EEEEEEEEECCCCCEEEEECCE
T ss_conf 9999841771699736523343388999998389868997988899987898------5899999988999779998689
Q ss_pred CCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1112322356567742561806997990088855478982897012688445678999979999999999997
Q gi|254780283|r 242 IFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 242 vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
|++.+|+.||++|++..++++++|+|. +|++|+||+|||||+|||++.++||+.+|++||++||+++++||.
T Consensus 442 vFV~iG~~Pnt~~l~~~v~l~~~G~I~-vD~~~~TnvpGVFAAGDvt~~~~kQi~~A~G~Ga~AAlsA~~Yl~ 513 (515)
T TIGR03140 442 VFVQIGLVPNTEWLKDAVELNRRGEIV-IDERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLI 513 (515)
T ss_pred EEEECCCCCCHHHHHCHHCCCCCCEEE-CCCCCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHHHHH
T ss_conf 999849976625651511107997398-299870799987985667389866787866647999999999873
No 3
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=100.00 E-value=0 Score=507.40 Aligned_cols=305 Identities=38% Similarity=0.647 Sum_probs=283.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
++-|||+|||||||||+||+|++|+|++++|+|++.+|||+.++..++||||++. ++|.+|++++++|+.+|+++++.+
T Consensus 2 ~~~YDvIIIGgGPAGlsAAIYaaRaglktlvIEk~~~GGqi~~t~~VeNYPG~~~-isG~eL~~~m~~qA~~~Gve~~~~ 80 (555)
T TIGR03143 2 EEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGILN-TTGPELMQEMRQQAQDFGVKFLQA 80 (555)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEECCCEEECCCCCC-CCHHHHHHHHHHHHHHCCCEEEEE
T ss_conf 8447299999568899999999978996799966886865563685687888779-868999999999999779699965
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCE
Q ss_conf 33201122222222222222221000014776642024652774332021012111111111221000010255654310
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEA 162 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A 162 (321)
+|++++..++.|+|.+.++ .+++++||||||+.|+.+++||+++|.+++++||++||++++++|+|+|||||++|+|.|
T Consensus 81 ~V~~i~~~g~~k~V~t~~g-~~~ak~VIIATGa~pr~LgipGE~ef~GrGVsYCAtCDG~ff~gK~V~VIGGG~~A~EeA 159 (555)
T TIGR03143 81 EVLDVDFDGDIKTIKTARG-DYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEA 159 (555)
T ss_pred EEEEEECCCCCEEEEECCC-EEEECEEEECCCCCCCCCCCCCHHHCCCCCEEEEECCCHHHCCCCEEEEECCCHHHHHHH
T ss_conf 6999973799589998897-899697999999971438999732216871377403763241798699983888999999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC---
Q ss_conf 12101333222344343322111121122355443322223112114864333444443331420321000001122---
Q gi|254780283|r 163 LHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNV--- 239 (321)
Q Consensus 163 ~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~--- 239 (321)
.+|++++++||+++|++.|++++.++++++++++|++++++.++++.|+.. ++++.+.+..+|+..++++
T Consensus 160 ~~Ls~~askVtII~r~d~f~a~~~~~e~~~~~~kI~v~~nt~v~ei~G~~~-------v~~~~~~n~~tGe~~~~~~~~~ 232 (555)
T TIGR03143 160 VFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATGDDG-------LRYAKFVNNVTGEITEYKAPKD 232 (555)
T ss_pred HHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCEEEEECCEEEEEECCCC-------EEEEEEEECCCCCEEEEECCCC
T ss_conf 999974890899997875685899999998579859997888999986785-------4899999988897899604656
Q ss_pred ---CCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---22111232235656774256180699799008885547898289701268844567899997999999999999742
Q gi|254780283|r 240 ---DGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 240 ---D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
|.|++++|+.||+++++..+++|++|+|+ +|++|+||+|||||+|||+..+.||+++|++||++||.++.||++..
T Consensus 233 ~~t~GVFVaiG~~PnTeL~k~~VelDe~GyI~-tDe~m~TnVpGVyAAGDV~~k~lrQvvTA~~dGaiAA~~aerYi~~~ 311 (555)
T TIGR03143 233 AGTFGVFVFVGYAPSSELFKGVVELDKRGYIP-TNEDMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred CCCEEEEEEECCCCCCHHHHCCCCCCCCCEEE-ECCCCCCCCCCEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHH
T ss_conf 67628999979965415660732588897197-39997059998898834528987735470875799999999999999
Q ss_pred H
Q ss_conf 2
Q gi|254780283|r 317 Q 317 (321)
Q Consensus 317 ~ 317 (321)
|
T Consensus 312 ~ 312 (555)
T TIGR03143 312 K 312 (555)
T ss_pred H
T ss_conf 9
No 4
>PRK10262 thioredoxin reductase; Provisional
Probab=100.00 E-value=0 Score=464.12 Aligned_cols=310 Identities=50% Similarity=0.827 Sum_probs=274.7
Q ss_pred CC-CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 98-76751999989777999999999869959999678877568750100787747777897899986643232002322
Q gi|254780283|r 1 MA-SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKI 79 (321)
Q Consensus 1 M~-~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~ 79 (321)
|. +++|||+|||||||||+||++|+|+|++++|||+.+.||++.....++||||+|..++|+++++++++|+.+|++++
T Consensus 1 m~~~k~~dviIIG~GPAGLsAA~~a~r~g~~~~lie~~~~GG~l~~~~~i~n~pg~~~~i~G~~l~~~~~~q~~~~~~~i 80 (321)
T PRK10262 1 MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEI 80 (321)
T ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHCCEE
T ss_conf 99860600999997689999999999869967999605968742005603561788876477999999999999708748
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 21133201122222222222222221000014776642024652774332021012111111111221000010255654
Q gi|254780283|r 80 IQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAA 159 (321)
Q Consensus 80 ~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~ 159 (321)
+..+|..++..++.|+|.++++ .+++|+||||||+.++.|+|||++.|+++++++|++||++++++|+|+|+|||++|+
T Consensus 81 ~~~~v~~i~~~~~~f~v~t~~g-~~~a~aViiAtG~~~r~l~ipge~~~~g~gv~~~~~cd~~~~~~k~VaViGgG~~A~ 159 (321)
T PRK10262 81 IFDHINKVDLQNRPFRLTGDSG-EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAV 159 (321)
T ss_pred EECCCCEEEEECCCEEEECCCC-EEEEEEEEEEECCCCCCCCCCCHHHHCCCCEEEEEEECCHHCCCCEEEEEECCHHHH
T ss_conf 9412315774036519975898-899989999646865537999714306886689885053001898799991888899
Q ss_pred CCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCC-CC
Q ss_conf 310121013332223443433221111211223---55443322223112114864333444443331420321000-00
Q gi|254780283|r 160 EEALHLAKIARRVTIVHRRSSLRSEKILQEKLF---LQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGN-FF 235 (321)
Q Consensus 160 e~A~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~---~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~-~~ 235 (321)
|.|..|++++++|++++|++.+++++..++++. ++.++.++++..+.++.++... ++++++.+...++ ..
T Consensus 160 d~A~~L~~~a~~V~lv~rr~~~~a~~~~~~~~~~~~e~~~i~~~~~~~i~~i~g~~~~------v~gv~l~~~~~~~~~~ 233 (321)
T PRK10262 160 EEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMG------VTGVRLRDTQNSDNIE 233 (321)
T ss_pred HHHHHHHHHCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCE------EEEEEEEECCCCCEEE
T ss_conf 9999999761989999744655627889999997763585587437078999778765------8999999377786679
Q ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEEC----CCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 112222111232235656774256180699799008----8855478982897012688445678999979999999999
Q gi|254780283|r 236 ERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMP----DSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 236 ~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~----~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 311 (321)
++++|.+++++|+.||+.+++..+++ ++|++.++. ++||||+|||||+|||++++.+|+++|+++|++||++|++
T Consensus 234 ~~~~d~v~v~~G~~pn~~~~~~~l~l-~~g~i~vd~~~~~~~~~TsipGifAaGDv~~~~~~qv~~Avg~G~~Aa~~a~~ 312 (321)
T PRK10262 234 SLDVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAER 312 (321)
T ss_pred EEEECEEEEEECCCCCHHHHCCCEEC-CCCEEEECCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEHHHHHHHHHHHHH
T ss_conf 98602389995576784775585402-39969968887678776898998999947789887687807858999999999
Q ss_pred HHHHHHH
Q ss_conf 9974220
Q gi|254780283|r 312 YLSIHQS 318 (321)
Q Consensus 312 yl~~~~~ 318 (321)
||.....
T Consensus 313 yL~~~~~ 319 (321)
T PRK10262 313 YLDGLAD 319 (321)
T ss_pred HHHHHHH
T ss_conf 9975411
No 5
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=459.76 Aligned_cols=302 Identities=51% Similarity=0.785 Sum_probs=280.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCC-EEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 675199998977799999999986995-9999678877568750100787747777897899986643232002322211
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLK-PVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~-v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
+.|||+|||||||||+||+|++|++++ ++|+|+..+|||+..+..++|||||+..+++++|++++++|+.++++++...
T Consensus 2 ~~~DviIIGaGPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~~ 81 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVED 81 (305)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 42288998958899999999987589856999478758863443333576798677750899999997776347088889
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCE
Q ss_conf 33201122222222222222221000014776642024652774332021012111111111221000010255654310
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEA 162 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A 162 (321)
.|.+++.....|.|+++++. +++|+||||||+.+++|.+||.++|++++++||++||+ ++++|+|+|+|||++|+|.|
T Consensus 82 ~v~~v~~~~~~F~v~t~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~sAve~A 159 (305)
T COG0492 82 EVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDSAVEEA 159 (305)
T ss_pred EEEEEEECCCEEEEEECCCE-EEEEEEEECCCCCCCCCCCCCCHHHCCCCEEEEEECCC-CCCCCEEEEECCCHHHHHHH
T ss_conf 98998606860999947974-98656999617765678898725435887599773476-35798499999987899999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 12101333222344343322111121122355443322223112114864333444443331420321000001122221
Q gi|254780283|r 163 LHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGI 242 (321)
Q Consensus 163 ~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~v 242 (321)
.+|++++++||+++|++.|++.+.+++++.+..++++++++.+.++.|+. ++++++++.+ ++...+++|.+
T Consensus 160 l~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~--------v~~v~l~~~~-~~~~~~~~~gv 230 (305)
T COG0492 160 LYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGDD--------VEGVVLKNVK-GEEKELPVDGV 230 (305)
T ss_pred HHHHHHCCEEEEEECCCCCCCCHHHHHHHHHCCCEEEEECCEEEEECCCC--------CCEEEEEECC-CCEEEEEEEEE
T ss_conf 99885368399996586668279999998735882899787035871666--------3269999357-83689872579
Q ss_pred CCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 112322356567742561806997990088855478982897012688445678999979999999999997422
Q gi|254780283|r 243 FIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLSIHQ 317 (321)
Q Consensus 243 i~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~~~ 317 (321)
++++|..||+++++..+.++++|++++ ++.||||+|||||+|||+.++.+|+.+|+++|++||.++.+||..++
T Consensus 231 f~~iG~~p~~~~~~~~~~~~~~g~I~v-~~~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~~ 304 (305)
T COG0492 231 FIAIGHLPNTELLKGLGVLDENGYIVV-DEEMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESLA 304 (305)
T ss_pred EEECCCCCCHHHHHCCCCCCCCCCEEC-CCCCEECCCCEEECHHHCCCCCCEEEEHHCCHHHHHHHHHHHHHHCC
T ss_conf 996178883466530244368964872-89827045888986233156321220021538999999998665406
No 6
>KOG0404 consensus
Probab=100.00 E-value=0 Score=429.85 Aligned_cols=307 Identities=47% Similarity=0.783 Sum_probs=289.6
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-----CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 987675199998977799999999986995999967-----887756875010078774777789789998664323200
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-----SDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENF 75 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-----~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~ 75 (321)
|.++..+|+|||+|||+.+||+|++|..++++|||. -.+||||+.+..++||||||+++.|++|++++++|..+|
T Consensus 4 ~~~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~ 83 (322)
T KOG0404 4 GMTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERF 83 (322)
T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 44122038998358067778999765026756881111168688863456520134899975456688999999888751
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCC--CCCCEEECCCCCCCCCCC--CCCCCEEE
Q ss_conf 23222113320112222222222222222100001477664202465277--433202101211111111--12210000
Q gi|254780283|r 76 GTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESE--KKFQGFGVSACATCDGFF--YKNKDVIV 151 (321)
Q Consensus 76 ~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~--~~~~~~~v~~~~~~d~~~--~~~k~v~V 151 (321)
+.++++..|.+++.+..+|+|.++. +.+++|++|+|||+..+.+.+||. .+||.++++.|+.||+.. |+||..+|
T Consensus 84 Gt~i~tEtVskv~~sskpF~l~td~-~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laV 162 (322)
T KOG0404 84 GTEIITETVSKVDLSSKPFKLWTDA-RPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAV 162 (322)
T ss_pred CCEEEEEEHHHCCCCCCCEEEEECC-CCEEEEEEEEECCCCEEEEECCCCCCCHHHHCCCCHHHCCCCCCHHHCCCEEEE
T ss_conf 6465410022222368976988437-724530699921630124654787752577636405312367652115874599
Q ss_pred EECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCC
Q ss_conf 10255654310121013332223443433221111211223554433222231121148643334444433314203210
Q gi|254780283|r 152 VGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKE 231 (321)
Q Consensus 152 iGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~ 231 (321)
||||++++|.|.+|.+.+++|++++|++.||+++.+++++.++++|++++|+.+.+..|+. ..+.++++++.++
T Consensus 163 IGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd~------~~l~~l~ikn~~t 236 (322)
T KOG0404 163 IGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALGDG------KLLNGLRIKNVKT 236 (322)
T ss_pred ECCCHHHHHHHHHHHHHCCEEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHCCCC------CCCCCEEEEECCC
T ss_conf 8586788789998874143799999712446778999987539976999311220020671------4024369874144
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00001122221112322356567742561806997990088855478982897012688445678999979999999999
Q gi|254780283|r 232 GNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 232 g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 311 (321)
|+...++++.++.++|-.|++.+++.++++|++|++.+.+.+-.||+||+||+|||.+..++|+++|+++|++||+.+.+
T Consensus 237 ge~~dl~v~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe~ 316 (322)
T KOG0404 237 GEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAER 316 (322)
T ss_pred CCCCCCCCCEEEEEECCCCHHHHHCCCEEECCCCEEEECCCCCCCCCCCEEECCCCCHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 75013202406997157826667427342136750896268644556524531643127889988663353465404887
Q ss_pred HHH
Q ss_conf 997
Q gi|254780283|r 312 YLS 314 (321)
Q Consensus 312 yl~ 314 (321)
||+
T Consensus 317 yL~ 319 (322)
T KOG0404 317 YLT 319 (322)
T ss_pred HHH
T ss_conf 743
No 7
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=0 Score=401.99 Aligned_cols=303 Identities=29% Similarity=0.532 Sum_probs=279.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
+.-|||+||||||||-+||+|++|.|.++-++- ++.|||++-+..|+||.+.| .+.|++++..+.+|.++|.+++++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAIYaARKGiRTGl~a-erfGGQvldT~~IENfIsv~-~teGpkl~~ale~Hv~~Y~vDimn~ 286 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA-ERFGGQVLDTMGIENFISVP-ETEGPKLAAALEAHVKQYDVDVMNL 286 (520)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCHHHHHH-HHHCCEECCCCCHHHEECCC-CCCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 688349998688631678999986121110015-65188200000333300565-4546689999999876468245533
Q ss_pred -EEEECCCC---CCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCC
Q ss_conf -33201122---22222222222222100001477664202465277433202101211111111122100001025565
Q gi|254780283|r 83 -LVVSVDLD---RHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTA 158 (321)
Q Consensus 83 -~V~~i~~~---~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g 158 (321)
+..++.+. ++.+.|++.+|..+.++.+|+|||++||..++||+++|..+++.||++||+++|+||+|+||||||||
T Consensus 287 qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGGGNSG 366 (520)
T COG3634 287 QRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSG 366 (520)
T ss_pred HHHHCCEECCCCCCCEEEEECCCCEECCCEEEEECCCCHHCCCCCCHHHHHHCCEEECCCCCCCCCCCCEEEEECCCCCH
T ss_conf 43420201578886079995478351131699842764200899856887317826688899865179647998888612
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCC
Q ss_conf 43101210133322234434332211112112235544332222311211486433344444333142032100000112
Q gi|254780283|r 159 AEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERN 238 (321)
Q Consensus 159 ~e~A~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~ 238 (321)
+|.|..|+-..+.||+++..+++++++.+++++..-+|++++.+.+.+++.|+.. .++|+++++...|+.+.++
T Consensus 367 vEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~------kV~Gl~Y~dr~sge~~~l~ 440 (520)
T COG3634 367 VEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGD------KVTGLEYRDRVSGEEHHLE 440 (520)
T ss_pred HHHHHHHHHHHHEEEEEECCHHHHHHHHHHHHHHCCCCCEEEECCEEEEEECCCC------EECCEEEEECCCCCEEEEE
T ss_conf 8888767755551311210603215789999973279848982231468764775------0113277853678546787
Q ss_pred CCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2221112322356567742561806997990088855478982897012688445678999979999999999997
Q gi|254780283|r 239 VDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 239 ~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
.+.|++-+|..||++|++..+++.++|.|+ +|....||+|||||+|||++.++||+++||++|+.|+++++.||-
T Consensus 441 LeGvFVqIGL~PNT~WLkg~Vel~~rGEIi-vD~~g~T~vpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyLI 515 (520)
T COG3634 441 LEGVFVQIGLLPNTEWLKGAVELNRRGEII-VDARGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYLI 515 (520)
T ss_pred EEEEEEEEECCCCHHHHHCHHHCCCCCCEE-EECCCCCCCCCEEECCCCCCCCCCEEEEEECCCCHHHHHHHHHHE
T ss_conf 401589970346816761511117676478-855787678723533753577410489982675133333314320
No 8
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=100.00 E-value=0 Score=356.83 Aligned_cols=291 Identities=23% Similarity=0.352 Sum_probs=215.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC------
Q ss_conf 75199998977799999999986995999967887756875010078774777789789998664323200232------
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTK------ 78 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~------ 78 (321)
.|||+||||||+|+-||++++++|++|+|+||+.+||.|++..||+- ..-+...+++++++.++++||++
T Consensus 1 ~yD~vViGgGPGGYVAAIrAAQlG~KValvEK~~lGGtCLN~GCIPt----KaLL~~ae~~~~~~h~a~~~Gi~~~~~v~ 76 (481)
T TIGR01350 1 EYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKEKLGGTCLNVGCIPT----KALLHSAEVYDEIKHKAKDLGIEVENNVS 76 (481)
T ss_pred CCCEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCEEECCCCCCC----HHHHHHHHHHHHHHHHHHHCCEEECCEEE
T ss_conf 95189987787727999999864980899980356874872776754----78877667899999889867803367126
Q ss_pred -------------------------------CCCEEEEECCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCEEEEECC
Q ss_conf -------------------------------22113320112222222222222---22210000147766420246527
Q gi|254780283|r 79 -------------------------------IIQDLVVSVDLDRHPFLVETQSG---DLWHADAVVIATGSEVKWLRLES 124 (321)
Q Consensus 79 -------------------------------~~~~~V~~i~~~~~~~~v~~~~g---~~~~a~~lIiAtG~~~~~~~ipG 124 (321)
.+.++-. -.+.+...|..+++ ++++++.+||||||.|+.||.||
T Consensus 77 ~d~~~~~~rK~~VV~~L~~Gv~~LlkknKv~v~~G~a~--~~~~~~v~V~~~~~~~~~~~~~k~~iiATGS~P~~lp~~g 154 (481)
T TIGR01350 77 VDWEKMQERKNKVVKKLVGGVKGLLKKNKVTVIKGEAK--FLDPNTVSVTGENGEEEETLEAKNIIIATGSRPRELPGPG 154 (481)
T ss_pred ECHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE--EECCCEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCC
T ss_conf 75899999988987542467898863068059999999--9858589983565531147874037993386034357778
Q ss_pred -CCCCCEE-ECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC------CCCCCCCCCCCCC
Q ss_conf -7433202-1012111111111221000010255654310121013332223443433221------1112112235544
Q gi|254780283|r 125 -EKKFQGF-GVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS------EKILQEKLFLQSN 196 (321)
Q Consensus 125 -~~~~~~~-~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~------~~~~~~~~~~~~~ 196 (321)
.+.-+.. -|...-..-.....+++++|||||.+|+|+|..++++|.+||+|+..|++++ ++.+.++ +++.+
T Consensus 155 ~~~~~~~~G~v~~S~~al~l~~~P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~drILp~~D~evSk~~~~~-L~~~G 233 (481)
T TIGR01350 155 GFDEDGKDGVVITSTGALSLKEVPESLVIIGGGVIGVEFASIFASLGVKVTVIEMLDRILPGEDAEVSKVVKKK-LKKKG 233 (481)
T ss_pred CCCCCCCCCEEECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHH-HHHCC
T ss_conf 65767788789832687432248856699878667788999998539808999457500354316899999999-97449
Q ss_pred -CCCCCCCCEE--ECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHH--HHHC-CCCEECCCCEEEE
Q ss_conf -3322223112--11486433344444333142032100000112222111232235656--7742-5618069979900
Q gi|254780283|r 197 -IDFLFDTEVV--DVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTK--IFRH-QLKMTNTNYIWTM 270 (321)
Q Consensus 197 -i~~~~~~~v~--~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~--~~~~-~~~~~~~g~i~~~ 270 (321)
|++++++.|+ .+..+.... . +.++....|+...++.|.|++|+|++||++ -|+. +++++++|.|. +
T Consensus 234 Nv~i~~~~~V~~~~~~~~~~~v------~-~~~~~~g~ge~~~~~~e~vLvavGR~pn~~~~GLe~~Gv~~~~rG~i~-v 305 (481)
T TIGR01350 234 NVKILTNAKVTGAAVEKNDDQV------V-VEVELEGKGEVETLTAEKVLVAVGRKPNTEGLGLEKLGVKLDERGRIV-V 305 (481)
T ss_pred CEEEECCCEEECCEEEECCCEE------E-EEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEEECCCCEEE-E
T ss_conf 8498548544233577528789------9-999987998058898739999842434767646021211887898188-7
Q ss_pred CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88855478982897012688445678999979999999999
Q gi|254780283|r 271 PDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 271 ~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 311 (321)
|++||||+|||||+|||++++ -+++.|..||.+||.+|.-
T Consensus 306 d~~~~Tnv~~IYAIGDv~gg~-mLAH~A~~eG~vAAe~iaG 345 (481)
T TIGR01350 306 DEYMRTNVPGIYAIGDVIGGP-MLAHVASHEGIVAAENIAG 345 (481)
T ss_pred CCEEEECCCCEEEEEECCCCC-HHHHHHHHHHHHHHHHHHC
T ss_conf 983251689666887347870-2689999878999999818
No 9
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=344.32 Aligned_cols=290 Identities=24% Similarity=0.321 Sum_probs=211.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCC---------------CCCCC----CCCCCHHHH
Q ss_conf 67519999897779999999998699599996788775687501007---------------87747----777897899
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIE---------------NYPGF----ATSIRGDWL 64 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~---------------n~~g~----~~~~~~~~l 64 (321)
++|||+||||||||++||++|+|.|++|+|+|++.+||.|.+..++. +++++ ...+...++
T Consensus 2 ~~YDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~GGtC~~~GCiPsK~l~~~a~~~~~~~~~~~~gi~~~~~i~~~~~ 81 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCMPSKALIAAAEAFHEAKHAAKFGIHVDPKIDGKKV 81 (460)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHH
T ss_conf 81698999977899999999996979099995899886105057151599999999999997534148666784099999
Q ss_pred HHHHHHHHHH------------CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEE
Q ss_conf 9866432320------------0232221133201122222222222222221000014776642024652774332021
Q gi|254780283|r 65 MEQMRQQAEN------------FGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFG 132 (321)
Q Consensus 65 ~~~~~~~~~~------------~~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~ 132 (321)
+++.++...+ .+++++.++..-+ +..+|..++++++++|++|||||++| |++||.+.+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~l~~~~~v~~i~g~a~~~----~~~~v~v~~~~~i~a~~vIIATGs~~--~~iPg~~~~~~~~ 155 (460)
T PRK06292 82 MARVRSERDRFVGGVVEGLEKKPKIDKIKGTARFI----DPNTVEVGNGEEIEAKNIVIATGSRP--PVIPGSWLILGDR 155 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC----CCCEEEECCCEEEEECEEEEECCCCC--CCCCCCCCCCCCC
T ss_conf 99999999998656899997338819998489963----79889978977996158999608999--9999841248872
Q ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCCCCCC--CCCCCCCCCCCEEEC
Q ss_conf 012111111111221000010255654310121013332223443433221--1112112235--544332222311211
Q gi|254780283|r 133 VSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQEKLFL--QSNIDFLFDTEVVDV 208 (321)
Q Consensus 133 v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~~~~~~--~~~i~~~~~~~v~~i 208 (321)
+..+.........+|+++|||||++|+|+|..|+++|++||+++|++++.. ++...+.+.+ +.++++++++.++++
T Consensus 156 ~~t~~~~~~~~~~pk~v~VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~~ll~~~d~~~~~~~~~~l~~~i~i~~~~~v~~i 235 (460)
T PRK06292 156 LITSDDAFELDDLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLTDPEISDQAQKLLSKEFKIKLGAKVTSV 235 (460)
T ss_pred EEECHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEECCEEEEE
T ss_conf 89464453355588569999986788799999984698699996247543214999999999998609889928779999
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEEECCCCCCCCCCEEEEC
Q ss_conf 48643334444433314203210000011222211123223565677--4-25618069979900888554789828970
Q gi|254780283|r 209 IGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWTMPDSTATSIPGIFAAG 285 (321)
Q Consensus 209 ~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~~~~~~~Ts~p~Iya~G 285 (321)
.++... +.+.....++.+++++|.|++++|++||++.+ + .+++++++|+|. +|++||||+|||||+|
T Consensus 236 ~~~~~~---------~~v~~~~~~~~~~i~~D~vl~aiG~~Pn~~~L~l~~~gi~ld~~G~I~-VD~~~~Ts~p~IyA~G 305 (460)
T PRK06292 236 ERKGDK---------VEVEYEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPV-VDPHTQTNVPGIYAAG 305 (460)
T ss_pred EECCCE---------EEEEEECCCCCEEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCC-CCCCCCCCCCCEEEEC
T ss_conf 975997---------999995499628999528999137513555657231186317999881-4887302887358740
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1268844567899997999999999
Q gi|254780283|r 286 DVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 286 Dv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
||++.+ .+++.|..||.+|+.++.
T Consensus 306 Dv~g~~-~la~~A~~qg~~a~~~i~ 329 (460)
T PRK06292 306 DVNGGP-PLLHEAADEGIIAAENAA 329 (460)
T ss_pred CCCCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 357887-767899999999999972
No 10
>PRK11749 putative oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=338.76 Aligned_cols=298 Identities=28% Similarity=0.341 Sum_probs=222.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 76751999989777999999999869959999678-87756875010078774777789789998664323200232221
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQ 81 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~ 81 (321)
...++|+|||||||||+||++|+|+|++|+|||+. .+||.+. +.+|.|+. ..+++++..+++.++|+++..
T Consensus 138 ~~gkkVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGll~-----~GIP~~rl---pk~v~~~ei~~i~~~GV~~~~ 209 (460)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR-----YGIPEFRL---PKDIVDREVERLLKLGVEIRT 209 (460)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEE-----ECCCCCCC---CHHHHHHHHHHHHHCCCEEEC
T ss_conf 7899899989678999999999976984799704787875575-----45899755---447999999999853978985
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCC-CCEEEEECCCCCCCEEE---------CCCCCCCCCCCCCCCCEEE
Q ss_conf 1332011222222222222222210000147766-42024652774332021---------0121111111112210000
Q gi|254780283|r 82 DLVVSVDLDRHPFLVETQSGDLWHADAVVIATGS-EVKWLRLESEKKFQGFG---------VSACATCDGFFYKNKDVIV 151 (321)
Q Consensus 82 ~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~-~~~~~~ipG~~~~~~~~---------v~~~~~~d~~~~~~k~v~V 151 (321)
+...+-+. ++ ++- .-.||+||+|||+ .|+.++|||++.....+ ...+..++.....+|+|+|
T Consensus 210 n~~vG~di-----tl--~~L-~~~ydAV~lAtGa~~~r~l~ipGe~~~GV~~a~dfL~~~~~~~~~~~~~~~~~Gk~VvV 281 (460)
T PRK11749 210 NTAVGRDI-----TL--DEL-RAEYDAVFIGTGLGLPRFLGIPGENLGGVYSAVDFLTRVNQDAVADDDTLIAVGKRVVV 281 (460)
T ss_pred CEEECCCC-----CH--HHH-HHCCCEEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCCCCCEEEE
T ss_conf 55856643-----28--877-41148899944789886479998668887898999999743654445775544874899
Q ss_pred EECCCCCCCCEEEEECCCC-CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC--------
Q ss_conf 1025565431012101333-22234434332--211112112235544332222311211486433344444--------
Q gi|254780283|r 152 VGGGNTAAEEALHLAKIAR-RVTIVHRRSSL--RSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPS-------- 220 (321)
Q Consensus 152 iGgG~~g~e~A~~L~~~~~-~Vtli~r~~~l--~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~-------- 220 (321)
||||++|+|+|..+.++|. +|++++|++.. .++....+.+ ++.++++++.+.++++.++.........
T Consensus 282 IGgGnvA~D~Arta~r~GA~~V~vv~rr~~~~mpa~~~Ei~~A-~~eGv~~~~~~~p~ei~~~~~~v~gv~~~~~~l~~~ 360 (460)
T PRK11749 282 IGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHA-KEEGVEFVWLAAPVAILGDEGRVTGVKFERMELGEP 360 (460)
T ss_pred ECCCHHHHHHHHHHHHCCCCEEEEECCCCHHCCCCCHHHHHHH-HHCCEEEEECCCCEEEEECCCCEEEEEEEEEEEECC
T ss_conf 8984669998999998289846330007520099899999988-745708882668789996599579999999886157
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC--CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 3331420321000001122221112322356567742--56180699799008885547898289701268844567899
Q gi|254780283|r 221 VSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRH--QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITA 298 (321)
Q Consensus 221 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~--~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A 298 (321)
..+..-....+|+.+.+++|.|++|+|++|+..++.. .+.++++|.++++|+++|||+|||||+|||..+ ..++++|
T Consensus 361 d~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~g~~~~~~g~i~~~d~~~~Ts~~gVFAaGD~~~G-~~~vv~A 439 (460)
T PRK11749 361 DAGRRRPVPIEGSEFTLEADMVIKAIGQTPNPLILATTPGLAVTRWGTIIADDETGRTSLPGVFAGGDIVTG-AATVVLA 439 (460)
T ss_pred CCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCEEEECCCCCC-CHHHHHH
T ss_conf 778735240799579998999999987898841003466812768999884689972289999994587767-0599999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99799999999999974220
Q gi|254780283|r 299 AAMGCMAALEVEHYLSIHQS 318 (321)
Q Consensus 299 ~~~G~~Aa~~i~~yl~~~~~ 318 (321)
+++|+.||.+|++||....|
T Consensus 440 i~~Gr~AA~~I~~~L~G~~~ 459 (460)
T PRK11749 440 VGDGKDAAEAIHEYLEGAAA 459 (460)
T ss_pred HHHHHHHHHHHHHHHCCCCC
T ss_conf 99999999999998589889
No 11
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=0 Score=337.59 Aligned_cols=303 Identities=25% Similarity=0.277 Sum_probs=207.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
..-+||+|||||||||+||++|+|+|++++|||+...+|.+... .+|.+. ++...+. ...+++.+.++++..+
T Consensus 15 ~~gkkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~~GG~~~~----gip~~~--~p~~~~~-~~~~~l~~~g~~~~~~ 87 (350)
T PRK12770 15 PTGKKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPEPGGLMVF----GIPEFR--IPIERVR-EGVRELEELGVVFHTR 87 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEE----EECCCC--CCHHHHH-HHHHHHHHHCCEEECC
T ss_conf 89798999995588999999999789985999536969828998----347976--6688999-9999999709769732
Q ss_pred E-EEE----CCCCCCCCCCCC--CCCCCCCCCEECCCCCC-CCEEEEECCCCCCC------------EEECCCCCCCCCC
Q ss_conf 3-320----112222222222--22222210000147766-42024652774332------------0210121111111
Q gi|254780283|r 83 L-VVS----VDLDRHPFLVET--QSGDLWHADAVVIATGS-EVKWLRLESEKKFQ------------GFGVSACATCDGF 142 (321)
Q Consensus 83 ~-V~~----i~~~~~~~~v~~--~~g~~~~a~~lIiAtG~-~~~~~~ipG~~~~~------------~~~v~~~~~~d~~ 142 (321)
. +.. .......+.... .+.....||++|+|||+ .|+.|++||++... .....+|..++.+
T Consensus 88 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~daviiAtG~~~~r~l~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~ 167 (350)
T PRK12770 88 TKVYCDEPPHEEEGDEFVEDFVSLEELVEEYDAVLIATGTWKSRKLGIPGENLPGVYSALEYLFRIRAARLGYLPWEKVP 167 (350)
T ss_pred EEEEEECCEEEEECCEEEEEEEEHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 09985020113303203577601898774189999965899773589887456780864787877653435335534466
Q ss_pred CCCCCCEEEEECCCCCCCCEEEEECCCC-CCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC-
Q ss_conf 1122100001025565431012101333-222344343322--111121122355443322223112114864333444-
Q gi|254780283|r 143 FYKNKDVIVVGGGNTAAEEALHLAKIAR-RVTIVHRRSSLR--SEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLF- 218 (321)
Q Consensus 143 ~~~~k~v~ViGgG~~g~e~A~~L~~~~~-~Vtli~r~~~l~--~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~- 218 (321)
.+++|+|+|||+|++|+|+|..+++++. +|++++|++... +.....+++ .+.+++++.+..++++.++.......
T Consensus 168 ~~~gk~vvVvGgG~~a~e~A~~~~~~Ga~~v~l~~r~~~~~~~~~~~~~~~l-~~~gv~~~~~~~~~~i~~~~~v~~v~~ 246 (350)
T PRK12770 168 PVEGKKVVVVGAGLTAVDAALEAKLLGAEKVYMAYRRTINEAPAGKYEIERL-IERGVEFLELVTPVRIIGEGKVEAVEL 246 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHHHHH-HHCCCEEEECCCEEEEECCCCEEEEEE
T ss_conf 5589889998986456799999997599689999666500286189999999-976988997452299982796789999
Q ss_pred -------CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCEECCCCEEEECCCCCCCCCCEEEECCCCCC
Q ss_conf -------443331420321000001122221112322356567742-561806997990088855478982897012688
Q gi|254780283|r 219 -------PSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRH-QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADE 290 (321)
Q Consensus 219 -------~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~-~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~ 290 (321)
....+.......+|+.+++++|.|++++|++||++++++ +++++++|++. +|++||||+|||||+|||+++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~g~~~~i~~D~vlvavG~~P~~~~~~~~gv~ld~~G~I~-vd~~~~TsvpgIyAaGDv~~g 325 (350)
T PRK12770 247 AKMRLGEPDESGRPRPEPIPGSEFVLEADTVITAIGEIPTPPFKKELGIELNRDGEIK-VDEKHMTSREGVFAAGDVVTG 325 (350)
T ss_pred EEEEECCCCCCCCEEEEEECCCCEEECCCEEEEEECCCCCCCHHHHCCEEECCCCEEE-ECCCCEECCCCEEEEECCCCC
T ss_conf 9988605666774553121374103105789999777788413541591288998198-698974489999980168788
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4456789999799999999999974
Q gi|254780283|r 291 RYRQAITAAAMGCMAALEVEHYLSI 315 (321)
Q Consensus 291 ~~~~~~~A~~~G~~Aa~~i~~yl~~ 315 (321)
+ .++++|++||++||.+|++||..
T Consensus 326 ~-~~a~~A~~eG~~AA~~i~~yL~g 349 (350)
T PRK12770 326 P-SKIGKALKSGLRAAQSIHEWLLG 349 (350)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8-89999999999999999998776
No 12
>PRK06370 mercuric reductase; Validated
Probab=100.00 E-value=0 Score=338.86 Aligned_cols=288 Identities=22% Similarity=0.258 Sum_probs=212.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCC-----------------CCCCCCC----CCC
Q ss_conf 8767519999897779999999998699599996788775687501007-----------------8774777----789
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIE-----------------NYPGFAT----SIR 60 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~-----------------n~~g~~~----~~~ 60 (321)
.+++|||+||||||||++||++|+|.|++|+|+|++.+||+|.+..++. +.+|+.. .+.
T Consensus 1 ~~~~YDviVIG~GpAG~~AA~~aa~~G~~V~liEk~~~GG~Cln~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~d 80 (459)
T PRK06370 1 PAQRYDAVVIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSIGGPVAVD 80 (459)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 98717589999888999999999968991999968997743214683528999999999999977660792258867768
Q ss_pred HHHHHHHHHHHHH-----------H-CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCC
Q ss_conf 7899986643232-----------0-023222113320112222222222222222100001477664202465277433
Q gi|254780283|r 61 GDWLMEQMRQQAE-----------N-FGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKF 128 (321)
Q Consensus 61 ~~~l~~~~~~~~~-----------~-~~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~ 128 (321)
..++.++.++... + .+++++.++..-+ +..+|.. +++++++|++|||||+.|+.|++||.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~G~a~f~----~~~tv~v-~~~~~~a~~iiIATGs~p~~p~ipG~~~~ 155 (459)
T PRK06370 81 FKAVMARKRRIRARSRNGSEQWFRGLDGVDVFRGHARFE----GPNTVRV-GGELLRAKRIFINTGARAAVPPIPGLDEV 155 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC----CCCCCCC-CCEEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 999999999999875233898852258729999689971----5675356-98599762899888986545777887878
Q ss_pred CEEECCCCCCCC--CCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCC---CCCCCCCCCCCCCC
Q ss_conf 202101211111--1111221000010255654310121013332223443433221--1112---11223554433222
Q gi|254780283|r 129 QGFGVSACATCD--GFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKIL---QEKLFLQSNIDFLF 201 (321)
Q Consensus 129 ~~~~v~~~~~~d--~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~---~~~~~~~~~i~~~~ 201 (321)
. ++...+ .....+++++|||+|++|+|+|..|+++|++||+++|++++.. ++.. ..+.+++.+|++++
T Consensus 156 ~-----~~ts~~~~~l~~~P~~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gi~i~~ 230 (459)
T PRK06370 156 G-----YLTNETVFSLDELPEHLAVIGGGYIGLEFAQAFRRFGSEVTVVERGPRLLPREDEDVAEAVREILEREGIDVRL 230 (459)
T ss_pred C-----EECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 7-----87446873715489549998984779999999996398899999657345554756789999999852986202
Q ss_pred CCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEEECCCCCCCC
Q ss_conf 231121148643334444433314203210000011222211123223565677--4-2561806997990088855478
Q gi|254780283|r 202 DTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWTMPDSTATSI 278 (321)
Q Consensus 202 ~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~~~~~~~Ts~ 278 (321)
++.+.++.++... +.+....+++..++++|.|++++|++||++.+ + .+++++++|+|. +|++||||+
T Consensus 231 ~~~v~~i~~~~~~---------~~v~~~~~~~~~~i~~d~vl~a~Gr~Pnt~~L~Le~~gv~~d~~G~I~-Vd~~~~Ts~ 300 (459)
T PRK06370 231 DAKCLRVARDGDG---------IAVGLDCAGGAPEIAGSHILVAVGRVPNTDDLGLEAAGVATDARGYIK-VDDQLRTTN 300 (459)
T ss_pred CCEEEEEEEECCE---------EEEEEEECCCEEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCEE-ECCCCEECC
T ss_conf 7578999982998---------999999799738999758999614314655547100386328998588-799756378
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98289701268844567899997999999999
Q gi|254780283|r 279 PGIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 279 p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
|||||+|||++.+ .+++.|..||.+|+.|+.
T Consensus 301 p~IyA~GDv~g~~-~lah~A~~eg~~a~~n~~ 331 (459)
T PRK06370 301 PGIYAAGDCNGRG-AFTHTAYNDAEIVAANLL 331 (459)
T ss_pred CCEEEEECCCCCC-CCCCHHHHHHHHHHHHHH
T ss_conf 7449831146886-774589999999999983
No 13
>PRK12831 putative oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=333.85 Aligned_cols=298 Identities=27% Similarity=0.347 Sum_probs=220.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 76751999989777999999999869959999678-87756875010078774777789789998664323200232221
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQ 81 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~ 81 (321)
+..++|+|||+|||||+||.+|+++|++|+|||+. .+||++. +.+|.|+ ++.++++++..+.+.++|+++..
T Consensus 138 ~~gkkVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~GG~l~-----yGIP~~R--Lpk~~vl~~ei~~l~~~GV~~~~ 210 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEPGGVLV-----YGIPEFR--LPKETVVKKEIENIKKLGVKIET 210 (464)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCEEE-----ECCCCCC--CCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 8999899989768999999999976991799827888898044-----5168887--66789999999999852938991
Q ss_pred EEEEECCCCCCCCCCCCCCC-CCCCCCEECCCCCCC-CEEEEECCCCCCCEEE-CC----------CCCCCCCCCCCCCC
Q ss_conf 13320112222222222222-222100001477664-2024652774332021-01----------21111111112210
Q gi|254780283|r 82 DLVVSVDLDRHPFLVETQSG-DLWHADAVVIATGSE-VKWLRLESEKKFQGFG-VS----------ACATCDGFFYKNKD 148 (321)
Q Consensus 82 ~~V~~i~~~~~~~~v~~~~g-~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~-v~----------~~~~~d~~~~~~k~ 148 (321)
+...+-+. ..++- +.-.||+|++|+|+. ++.++|||.+.-..++ +. +....+.....||+
T Consensus 211 n~~vG~di-------s~~~L~~~~~yDAV~la~Ga~~~r~l~ipG~~~~gV~~a~~fL~~~n~~~~~~~~~~~~~~~Gk~ 283 (464)
T PRK12831 211 NVIVGRTV-------TIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKK 283 (464)
T ss_pred CCCCCCCC-------CHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCCCCCCCCE
T ss_conf 57427876-------79999635699889994488876437888766888689799999987300126656674225877
Q ss_pred EEEEECCCCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC---------
Q ss_conf 00010255654310121013332223443433--2211112112235544332222311211486433344---------
Q gi|254780283|r 149 VIVVGGGNTAAEEALHLAKIARRVTIVHRRSS--LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPL--------- 217 (321)
Q Consensus 149 v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~--l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~--------- 217 (321)
|+|||||++|+|+|..+.|+|.+|++++|++. ..+.+...+.+ .+.++++++...++++.++......
T Consensus 284 VvVIGGGntA~D~arta~R~GaeV~ivyrr~~~~mpa~~~E~~~a-~eeGv~~~~~~~p~~i~~~e~G~v~gv~~~~~~l 362 (464)
T PRK12831 284 VAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHA-KEEGVIFDLLTNPVEILGDENGWVKGMKCIKMEL 362 (464)
T ss_pred EEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHHHHHHH-HHCCCEEEECCCCEEEEECCCCCEEEEEEEEEEE
T ss_conf 899888556899999887429779997045721389870123378-7489789965685588754888388789999884
Q ss_pred -CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC--CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHH
Q ss_conf -4443331420321000001122221112322356567742--5618069979900888554789828970126884456
Q gi|254780283|r 218 -FPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRH--QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQ 294 (321)
Q Consensus 218 -~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~--~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~ 294 (321)
....++.......+|+.+.++||.||+|+|+.|+..++.. +++++++|++.+++++++||+|||||+|||..++ .+
T Consensus 363 ~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiGq~~~~~~~~~~~gi~~~~~g~i~~~~~~~~Ts~~gVFa~GD~~~G~-~~ 441 (464)
T PRK12831 363 GEPDASGRRRPVEIEGSEFVMEVDTVIMSLGTSPNPLISSTTPGLEINKRGCIVADEETGLTSIEGVYAGGDAVTGA-AT 441 (464)
T ss_pred CCCCCCCCEEEEECCCCEEEEECCEEEECCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCEEECCCCCCCC-HH
T ss_conf 35578887713764993799989999999868987430013668027799988847899842899999827867683-39
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7899997999999999999742
Q gi|254780283|r 295 AITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 295 ~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
+++|+++|+.||.+||+||+..
T Consensus 442 vV~Ai~~Gr~AA~~I~~yL~gk 463 (464)
T PRK12831 442 VILAMGAGKKAAKAIDEYLSKK 463 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999999999999999997359
No 14
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=100.00 E-value=0 Score=332.19 Aligned_cols=291 Identities=24% Similarity=0.238 Sum_probs=215.5
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCCC------------------CC--CCCCCC
Q ss_conf 98767519999897779999999998699599996788-7756875010078------------------77--477778
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIEN------------------YP--GFATSI 59 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~n------------------~~--g~~~~~ 59 (321)
|+-.+|||+||||||||++||++|+|.|++|+|+|+.. +||.|.+..++.. +. +.+..+
T Consensus 2 m~m~~YDviVIGaGpaG~~aA~~aa~~G~kV~viE~~~~~GG~Cln~GCIPsK~L~~~a~~~~~~~~~~~~~~~~~~~~~ 81 (465)
T PRK05249 2 MHMYDYDAVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHWGTIPSKALREAVLRIIGFNQNPLYRDYRVKLRI 81 (465)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 98777898999977899999999997899299997699976653444617679999999999998755424655666862
Q ss_pred CHHHHHHH-----------HHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCEEEEECCCC
Q ss_conf 97899986-----------6432320023222113320112222222222222--2221000014776642024652774
Q gi|254780283|r 60 RGDWLMEQ-----------MRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSG--DLWHADAVVIATGSEVKWLRLESEK 126 (321)
Q Consensus 60 ~~~~l~~~-----------~~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~a~~lIiAtG~~~~~~~ipG~~ 126 (321)
+.++++.+ .+.++.+.+++++.++..-++. +...|...+| +++++|++|||||+.|+.|+.++.+
T Consensus 82 ~~~~~~~~~~~~v~~~~~~~~~~l~~~gv~~i~G~a~f~~~--~~v~V~~~dg~~~~i~a~~iIIATGs~p~~p~~~~~~ 159 (465)
T PRK05249 82 TFADLLARADRVINKQVEVRRGFYARNRVEVIQGRASFVDP--HTVEVECPDGSVETLTAEKIVIATGSRPYRPDDVDFD 159 (465)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCC--CCEEEECCCCCEEEEEEEEEEEECCCCCCCCCCCCCC
T ss_conf 89999999999998887899999986897899847897279--8404434899628998427999537524567878989
Q ss_pred CCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCC---CCCCCCCCCCCC
Q ss_conf 332021012111111111221000010255654310121013332223443433221--111211---223554433222
Q gi|254780283|r 127 KFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQE---KLFLQSNIDFLF 201 (321)
Q Consensus 127 ~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~~---~~~~~~~i~~~~ 201 (321)
. ..+.++..+......+|+++|||||++|+|+|..|+++|.+||++++++++.. ++...+ +.+++.+|++++
T Consensus 160 ~---~~v~~sd~~l~l~~~Pk~vvIIGgG~ig~E~A~~~~~lG~~Vtiv~~~~~ll~~~d~~~~~~l~~~l~~~gI~i~~ 236 (465)
T PRK05249 160 H---PRIYDSDSILSLDHLPRSLIIYGAGVIGCEYASIFRGLGVKVDLINTRDRLLSFLDDEISDALSYHFRNSGVVIRH 236 (465)
T ss_pred C---CEEEEHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCHHHCCHHHHHHHHHHHHHCCCEEEE
T ss_conf 8---7288367854330079759999998217999999996098778972166000221899999999999987929997
Q ss_pred CCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEEECCCCCCCC
Q ss_conf 231121148643334444433314203210000011222211123223565677--4-2561806997990088855478
Q gi|254780283|r 202 DTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWTMPDSTATSI 278 (321)
Q Consensus 202 ~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~~~~~~~Ts~ 278 (321)
++.++++.++.... .+.+. +| .++++|.|++++|++||++.+ + .+++++++|+|. +|++||||+
T Consensus 237 ~~~v~~i~~~~~~~-------~v~~~---~g--~~i~~D~Vl~a~Gr~pn~~~L~Le~~Gv~~d~rG~I~-VD~~~~Ts~ 303 (465)
T PRK05249 237 NEEYEKVEGGDDGV-------ILHLK---SG--KKIKADCLLYANGRTGNTDGLNLENIGLEADSRGQLK-VNSNYQTAV 303 (465)
T ss_pred CCEEEEEEEECCEE-------EEEEC---CC--CEEEEEEEEECCCCCCCCCCCCCHHCCEEECCCCCEE-ECCCCCCCC
T ss_conf 98899999608767-------99947---99--5998708998876666766566042575789998483-797987799
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98289701268844567899997999999999
Q gi|254780283|r 279 PGIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 279 p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
|+|||+|||++.+ .+++.|..||.+||.+|.
T Consensus 304 p~IyA~GDv~g~~-~lah~A~~qg~~aa~~i~ 334 (465)
T PRK05249 304 PHIYAVGDVIGFP-SLASASMDQGRIAAQHAV 334 (465)
T ss_pred CCEEECCCCCCCC-CCCHHHHHHHHHHHHHHC
T ss_conf 8707511257876-772678999999999974
No 15
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=100.00 E-value=0 Score=331.34 Aligned_cols=295 Identities=23% Similarity=0.308 Sum_probs=218.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 76751999989777999999999869959999678-87756875010078774777789789998664323200232221
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQ 81 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~ 81 (321)
...++|+|||+|||||+||.+|+|+|++|+|||+. .+||.+. +.+|.|+.+ .+++++-.+.+..+|++|.+
T Consensus 437 ~~GkKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~L~-----yGIP~fRLP---k~iv~~eI~~l~~lGV~~~~ 508 (760)
T PRK12778 437 KNGIKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGVLK-----YGIPEFRLP---NKIVDVEIENLVKMGVTFEK 508 (760)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEE-----ECCCCCCCC---HHHHHHHHHHHHHCCCEEEC
T ss_conf 6899899989778999999999977990699805888897576-----548611087---89999999999864979989
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEEE-CCCC----------CCCCCCCCCCCCE
Q ss_conf 13320112222222222222222100001477664-2024652774332021-0121----------1111111122100
Q gi|254780283|r 82 DLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGFG-VSAC----------ATCDGFFYKNKDV 149 (321)
Q Consensus 82 ~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~-v~~~----------~~~d~~~~~~k~v 149 (321)
+...+-+.+ .++-..-.||+|+||+|+. |+.++|||.+....++ +.+. +..+.....||+|
T Consensus 509 n~~vGkdit-------~~eL~~egyDAVfla~Ga~~pr~l~IpGe~l~gV~~a~eFL~~vnl~~~~~~~~~~p~~~Gk~V 581 (760)
T PRK12778 509 DCIVGKTIS-------VEELEEEGFKGIFVASGAGLPNFMNIPGENSINIMSSNEYLTRVNLMDAASPDSDTPVAFGKNV 581 (760)
T ss_pred CCEECCCCC-------HHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCEE
T ss_conf 957788689-------9999758899999940678775289998667785877999999764430266678742269889
Q ss_pred EEEECCCCCCCCEEEEECCCC-CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC---------
Q ss_conf 001025565431012101333-2223443433--2211112112235544332222311211486433344---------
Q gi|254780283|r 150 IVVGGGNTAAEEALHLAKIAR-RVTIVHRRSS--LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPL--------- 217 (321)
Q Consensus 150 ~ViGgG~~g~e~A~~L~~~~~-~Vtli~r~~~--l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~--------- 217 (321)
+||||||+|||+|....|+|. +|++++|+++ +.+.....+.+ ++.+|++++.+.+.++.++......
T Consensus 582 vVIGGGntAmD~artA~RlGAe~V~ivyRR~~~emPA~~~Ei~~A-~eEGV~f~~l~~P~~i~~de~G~v~gv~~~~~el 660 (760)
T PRK12778 582 AVIGGGNTAMDSVRTAKRLGAERAMIIYRRSEEEMPARLEEVKHA-KEEGIEFLTLHNPIEYIADEQGRVKQVILQKMEL 660 (760)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHHHHH-HHCCCEEEECCCCEEEEECCCCEEEEEEEEEEEE
T ss_conf 999997609999999998399869997037721199998999999-8579889916897899977996699999999997
Q ss_pred -CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC--CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHH
Q ss_conf -4443331420321000001122221112322356567742--5618069979900888554789828970126884456
Q gi|254780283|r 218 -FPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRH--QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQ 294 (321)
Q Consensus 218 -~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~--~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~ 294 (321)
..+..|.+.....+|+.+.+++|.||+|+|+.||..++.. .++++.+|++.+ |+.++||.|+|||+||+..++ .+
T Consensus 661 gepD~sGR~~p~~i~gse~~i~aD~VI~AIGq~~~~~~~~~~~gl~~~~~G~i~v-d~~~~Ts~~gVFAgGD~v~G~-~t 738 (760)
T PRK12778 661 GEPDASGRRSPVAIPGATETIDIDLAIVSVGVSPNPIVPSSIPGLELGRKGTIAV-DDNMQSSIPGIYAGGDIVRGG-AT 738 (760)
T ss_pred CCCCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCCCCCCCEEECCCCCEEE-CCCCCCCCCCEEECCCCCCCC-HH
T ss_conf 5537778887356599469999999999986898865211366725779997883-989634898999867867680-59
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 789999799999999999974
Q gi|254780283|r 295 AITAAAMGCMAALEVEHYLSI 315 (321)
Q Consensus 295 ~~~A~~~G~~Aa~~i~~yl~~ 315 (321)
++.||++|+.||.+|++||+.
T Consensus 739 VV~Ai~~Gr~AA~~Id~yL~~ 759 (760)
T PRK12778 739 VILAMGDGRRAAAAMNEQLSS 759 (760)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999999745
No 16
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=100.00 E-value=0 Score=337.75 Aligned_cols=294 Identities=27% Similarity=0.351 Sum_probs=228.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 87675199998977799999999986995999967-88775687501007877477778978999866432320023222
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-SDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKII 80 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~ 80 (321)
.+.+++|+|||+|||||+||-+|+|+|++|+|||. +.|||.++ |.+|-|+.+ -++++.-.+.++++|++|+
T Consensus 139 p~t~~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPGGV~~-----YGIPefRLp---Kei~~~E~k~LkklGv~fr 210 (462)
T TIGR01316 139 PSTKKKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPGGVLA-----YGIPEFRLP---KEIVETEVKKLKKLGVKFR 210 (462)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEE-----ECCCCCCCC---HHHHHHHHHHHHHCCEEEE
T ss_conf 88887799984682146889999747986999971489985675-----368885487---5788988887632663799
Q ss_pred CEEEEECCCCCCCCCCCCCCC-CCCCCCEECCCCCC-CCEEEEECCCCCCCEEECC------------CCCCCCCCCCCC
Q ss_conf 113320112222222222222-22210000147766-4202465277433202101------------211111111122
Q gi|254780283|r 81 QDLVVSVDLDRHPFLVETQSG-DLWHADAVVIATGS-EVKWLRLESEKKFQGFGVS------------ACATCDGFFYKN 146 (321)
Q Consensus 81 ~~~V~~i~~~~~~~~v~~~~g-~~~~a~~lIiAtG~-~~~~~~ipG~~~~~~~~v~------------~~~~~d~~~~~~ 146 (321)
++++++-. +++++- +.|-+|+|.|+||+ .|++.+|||..+...++.. .++..|-+..-+
T Consensus 211 ~~~lvGkt-------~TL~eL~~~YGfDAVFIgtGAG~pkl~NipG~~L~gvysA~dfLtR~nLmKAyefp~~dtPv~~g 283 (462)
T TIGR01316 211 TDYLVGKT-------VTLEELLEKYGFDAVFIGTGAGLPKLLNIPGEELKGVYSANDFLTRVNLMKAYEFPKKDTPVEVG 283 (462)
T ss_pred ECCEECCC-------HHHHHHHHHCCCCEEEEEECCCCCEECCCCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEC
T ss_conf 44375051-------12888887519707999506898700167843434002234688777776542366788756544
Q ss_pred CCEEEEECCCCCCCCEEEEECCCCC-CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCC----
Q ss_conf 1000010255654310121013332-22344343322--1111211223554433222231121148643334444----
Q gi|254780283|r 147 KDVIVVGGGNTAAEEALHLAKIARR-VTIVHRRSSLR--SEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFP---- 219 (321)
Q Consensus 147 k~v~ViGgG~~g~e~A~~L~~~~~~-Vtli~r~~~l~--~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~---- 219 (321)
|+|+||||||+|+|+|.+..|||.+ ||+++|+.+-. +-.+..+. +++++|+++|-.++++++||........
T Consensus 284 K~vvviGgGntAvD~artAlRLGaEqvh~~YRrtRedmtAr~EEi~h-a~eEGVkfhfl~Qpve~iGdE~G~V~avkf~~ 362 (462)
T TIGR01316 284 KKVVVIGGGNTAVDAARTALRLGAEQVHVVYRRTREDMTAREEEIKH-AEEEGVKFHFLLQPVEVIGDEEGEVKAVKFEK 362 (462)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHH-HHHCCCEEEEEECCEEEEECCCCEEEEEEEEE
T ss_conf 76899878536787776664528423699885477751366999998-85389289987421689865765189999885
Q ss_pred ------CCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC--CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCC
Q ss_conf ------43331420321000001122221112322356567742--5618069979900888554789828970126884
Q gi|254780283|r 220 ------SVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRH--QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADER 291 (321)
Q Consensus 220 ------~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~--~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~ 291 (321)
...+-+..-..+++...|+||.||+|+|..||.-..+. .+...++|.|. +||.++||.|||||.||+..+.
T Consensus 363 ~~~~E~~dsg~~r~~p~~~~e~~leaD~VI~AiG~~~Npi~~e~~r~lkt~~~GTIv-VdE~~~TsipGVfAGGD~i~G~ 441 (462)
T TIGR01316 363 TELLEERDSGEKRKVPVTDEEVKLEADAVIVAIGQEANPIIAEDSRSLKTSKRGTIV-VDEDLETSIPGVFAGGDVIRGE 441 (462)
T ss_pred CCCCCHHHCCCCEEEECCCCCEEEEECEEEEEECCCCCCEEEECCCEEEECCCCCEE-ECCCCCCCCCCEEECCCEEECC
T ss_conf 376881145781243049951788626599974589883033067333345886578-7476304767574267277458
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4567899997999999999999
Q gi|254780283|r 292 YRQAITAAAMGCMAALEVEHYL 313 (321)
Q Consensus 292 ~~~~~~A~~~G~~Aa~~i~~yl 313 (321)
.+++.||++|+.||.+|++||
T Consensus 442 -atVi~Amg~GkrAAk~I~eYl 462 (462)
T TIGR01316 442 -ATVILAMGDGKRAAKAIDEYL 462 (462)
T ss_pred -CEEEEECCCCHHHHHHHHHCC
T ss_conf -669985003568999874229
No 17
>PRK06116 glutathione reductase; Validated
Probab=100.00 E-value=0 Score=331.68 Aligned_cols=282 Identities=27% Similarity=0.381 Sum_probs=208.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCC---------------CC---CCCCCC---CCH
Q ss_conf 767519999897779999999998699599996788775687501007---------------87---747777---897
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIE---------------NY---PGFATS---IRG 61 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~---------------n~---~g~~~~---~~~ 61 (321)
+++|||+||||||||++||+++++.|++++|+|++.+||.|.+..++. ++ .|+... ...
T Consensus 2 s~~YDvvVIG~GpaG~~aA~~aa~~G~kV~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~G~~~~~~~~d~ 81 (450)
T PRK06116 2 TKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAKELGGTCVNVGCVPKKLMWYGAQFAEAFHDYAPGYGFDVTENKFDW 81 (450)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 97488899998889999999999687969999379978525415716469999999999999977875581368775289
Q ss_pred HHHHHH-------H----HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCE
Q ss_conf 899986-------6----43232002322211332011222222222222222210000147766420246527743320
Q gi|254780283|r 62 DWLMEQ-------M----RQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQG 130 (321)
Q Consensus 62 ~~l~~~-------~----~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~ 130 (321)
.++.++ + .+.+++.+++++.++..-++. + +|.. ++++++++++|||||+.|+.|+|||.+.
T Consensus 82 ~~~~~~~~~~i~~l~~~~~~~~~~~~V~~~~g~a~f~~~--~--tv~v-~~~~i~a~~ivIATGs~p~~p~ipG~e~--- 153 (450)
T PRK06116 82 KKLIANRDAYIDRLHGSYRRGLENNGVDLIEGFARFVDA--H--TVEV-NGETYTADHILIATGGRPSIPDIPGAEY--- 153 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCC--C--CCCC-CCEEEEEEEEEECCCCCCCCCCCCCCCE---
T ss_conf 999999999999999999999876896899706887268--7--4035-9829854179998789775899988112---
Q ss_pred EECCCCCCCCCCCC---CCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCC---CCCCCCCCCCCCC
Q ss_conf 21012111111111---221000010255654310121013332223443433221--111211---2235544332222
Q gi|254780283|r 131 FGVSACATCDGFFY---KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQE---KLFLQSNIDFLFD 202 (321)
Q Consensus 131 ~~v~~~~~~d~~~~---~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~~---~~~~~~~i~~~~~ 202 (321)
|.++|..+. .+|+++|||||++|+|+|..|+++|.+||++++.+++.. ++...+ +.+++.+|+++++
T Consensus 154 -----~~tsd~~~~l~~lP~~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~l~~~D~~~~~~l~~~l~~~gi~i~~~ 228 (450)
T PRK06116 154 -----GITSDGFFALEELPKRVAVVGAGYIAVEFAGVLHGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIQLHTN 228 (450)
T ss_pred -----EEECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHCCHHHHHHHHHHHHHCCCEEECC
T ss_conf -----661445225454797799999966699999999960984899994484012048777799999998649789639
Q ss_pred CCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEEECCCCCCCCC
Q ss_conf 31121148643334444433314203210000011222211123223565677--4-25618069979900888554789
Q gi|254780283|r 203 TEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWTMPDSTATSIP 279 (321)
Q Consensus 203 ~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~~~~~~~Ts~p 279 (321)
+.++++..+.... ..+.+. +| .++++|.|++++|++||++.+ + .+++++++|+|. +|+++|||+|
T Consensus 229 ~~v~~v~~~~~g~------~~v~~~---~g--~~~~~d~vl~a~Gr~Pnt~~l~L~~~gv~l~~~G~I~-vd~~~~Ts~~ 296 (450)
T PRK06116 229 AVPKAVEKNADGS------LTLTLE---DG--ETLTVDCLIWAIGREPNTDNLGLENTGVKLNEKGYII-VDEYQNTNVP 296 (450)
T ss_pred CEEEEEEECCCCC------EEEEEC---CC--CEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCCC-CCCCCCCCCC
T ss_conf 8899999859962------899987---99--7999708999178420556567501476775788765-7877777886
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8289701268844567899997999999999
Q gi|254780283|r 280 GIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 280 ~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
+|||+|||++.+ .+++.|..+|.+||.++.
T Consensus 297 ~IyA~GDv~g~~-~lah~A~~~g~~~a~~i~ 326 (450)
T PRK06116 297 GIYAVGDVTGRV-ELTPVAIAAGRRLSERLF 326 (450)
T ss_pred CEEEECCCCCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 337500146876-766899999999999981
No 18
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=100.00 E-value=0 Score=328.86 Aligned_cols=295 Identities=25% Similarity=0.333 Sum_probs=220.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 6751999989777999999999869959999678-877568750100787747777897899986643232002322211
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
..++|+|||||||||+||++|+++|++|+|||+. .+||.+. +.+|.|+.+ .+++++-.+.+.++|++|.++
T Consensus 192 tGKkVAIIGaGPAGLsaAy~L~~~Gh~VTVfE~~~~~GGmlr-----yGIP~yRLP---k~vld~EI~~i~~~GV~~~~n 263 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR-----YGIPRFRLP---ESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEE-----ECCCCCCCC---HHHHHHHHHHHHHCCCEEEEE
T ss_conf 899799968378999999999977990699815888898676-----448633389---999999999999719858866
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEE-ECCCCCC--CCCCCCCCCCEEEEECCCCC
Q ss_conf 3320112222222222222222100001477664-202465277433202-1012111--11111122100001025565
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGF-GVSACAT--CDGFFYKNKDVIVVGGGNTA 158 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~-~v~~~~~--~d~~~~~~k~v~ViGgG~~g 158 (321)
...+-+.+- ++-. -.||+|+||+|++ ++.++|||.+.-... ++.+... .......||+|+||||||+|
T Consensus 264 ~~vG~ditl-------~~L~-~~yDAVflaiGa~~~r~L~ipGedl~gV~~avdfL~~v~~g~~~~~GkkVvVIGGGNtA 335 (652)
T PRK12814 264 TVFGRDITL-------EELQ-KEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTA 335 (652)
T ss_pred EEECCCCCH-------HHHH-HHCCEEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCCEEECCCCHH
T ss_conf 794774779-------9998-65899999755787744798888787727689999985269866678852486688138
Q ss_pred CCCEEEEECCCC-CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC--------CCCCCCEEEC
Q ss_conf 431012101333-2223443433--2211112112235544332222311211486433344--------4443331420
Q gi|254780283|r 159 AEEALHLAKIAR-RVTIVHRRSS--LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPL--------FPSVSGVRLH 227 (321)
Q Consensus 159 ~e~A~~L~~~~~-~Vtli~r~~~--l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~--------~~~~~~v~~~ 227 (321)
||+|....|+|. +|++++|++. +.++++.++.+ .+++|++++.+.++++.++...... ..+.+|....
T Consensus 336 mD~ARTA~RlGA~~VtivyRRt~~eMpA~~~Ei~eA-~eEGV~~~~l~~P~~i~~~~g~~~~~~~~~~~ge~D~sGR~~p 414 (652)
T PRK12814 336 IDAARTALRLGAESVTILYRRTREEMPANRAEIEEA-LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRP 414 (652)
T ss_pred HHHHHHHHHCCCCEEEEEECCCHHCCCCCHHHHHHH-HHCCCCEEECCCCEEEEEECCCEEEEEEEEEEEEECCCCCEEE
T ss_conf 999999987489758998337633199986777788-8679846976155899986896899999999968878897724
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 321000001122221112322356567742-5618069979900888554789828970126884456789999799999
Q gi|254780283|r 228 NKKEGNFFERNVDGIFIAIGYKPNTKIFRH-QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAA 306 (321)
Q Consensus 228 ~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~-~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa 306 (321)
...+|+.+++++|.||+|+|+.++..+++. +++++.+|.+.+++++++||.|||||+||+..++ .+++.|+++|+.||
T Consensus 415 v~v~gse~~i~aD~VI~AIGQ~~d~~~~~~~gl~~~~~G~i~vd~~t~~Ts~~gVFAgGD~v~Gp-~tvV~AIa~Gr~AA 493 (652)
T PRK12814 415 VPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGA-DIAINAVEQGKRAA 493 (652)
T ss_pred EECCCCEEEEECCEEEECCCCCCCCCHHHCCCCCCCCCCCEEECCCCCCCCCCCEEECCCCCCCC-HHHHHHHHHHHHHH
T ss_conf 56599669961788998458788833222458636689988858888743999999898887684-49999999999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999742
Q gi|254780283|r 307 LEVEHYLSIH 316 (321)
Q Consensus 307 ~~i~~yl~~~ 316 (321)
.+|++||...
T Consensus 494 ~~Id~yL~G~ 503 (652)
T PRK12814 494 HAIDLFLNGK 503 (652)
T ss_pred HHHHHHHCCC
T ss_conf 9999985899
No 19
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=326.34 Aligned_cols=292 Identities=25% Similarity=0.340 Sum_probs=211.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCC-----------------CCCCC---CCCCH
Q ss_conf 87675199998977799999999986995999967887756875010078-----------------77477---77897
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIEN-----------------YPGFA---TSIRG 61 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n-----------------~~g~~---~~~~~ 61 (321)
+.-+|||+|||+||||++||+++++.|++|+|+|++.+||.|.+..++.. ..|+. ..+..
T Consensus 1 ~~~dYDviVIG~GpaG~~aA~~aa~~G~kV~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~~d~ 80 (462)
T PRK06416 1 AAFDYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGGTCLNRGCIPSKALLHAAERYREARHSEDFGIKAENVGFDF 80 (462)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
T ss_conf 98779989999888999999999968993999967997862041670506999999999999987762681267764089
Q ss_pred HHHHH-------H----HHHHHHHCCCCCCCEEEEECCCCCCCCCCCCC-CCCCCCCCEECCCCCCCCEEEEECCCCCCC
Q ss_conf 89998-------6----64323200232221133201122222222222-222221000014776642024652774332
Q gi|254780283|r 62 DWLME-------Q----MRQQAENFGTKIIQDLVVSVDLDRHPFLVETQ-SGDLWHADAVVIATGSEVKWLRLESEKKFQ 129 (321)
Q Consensus 62 ~~l~~-------~----~~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~-~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~ 129 (321)
.++.+ + ...++++.+++++.++..-++ .+...|... ++++++++++|||||++|+.| ||.+ +.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~l~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~~~~a~~iIIATGs~P~~~--pg~~-~~ 155 (462)
T PRK06416 81 KKVQEWKNGVVARLTGGVEGLLKKNKVDIIRGEAKLVD--PNTVRVKGEDGEQTYTAKNIILATGSRPREL--PGIE-FD 155 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC--CCEEEEEECCCCEEEEECEEEECCCCCCCCC--CCCC-CC
T ss_conf 99999999999998788999998779789983899812--7604555369966999486999989988779--9978-78
Q ss_pred EEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCC---CCCCCCCCCCCCCCCCC
Q ss_conf 021012111111111221000010255654310121013332223443433221--1112---11223554433222231
Q gi|254780283|r 130 GFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKIL---QEKLFLQSNIDFLFDTE 204 (321)
Q Consensus 130 ~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~---~~~~~~~~~i~~~~~~~ 204 (321)
+..+.++..+......+|+++|||||++|+|+|..|+++|.+||++++++++.. ++.. .++.+++.+|++++++.
T Consensus 156 ~~~v~ts~~~~~l~~lPk~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gi~i~~~~~ 235 (462)
T PRK06416 156 GKRVITSDEALNLDEVPKSLVVIGGGYIGIEFASAYASLGAEVTIIEALPRILPGFDKEISKLAERALKKRGIKIVTGAM 235 (462)
T ss_pred CCEEEEEHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEECCCE
T ss_conf 95598416645765479769998897878899999997397689974054323345746668999999964985144846
Q ss_pred EEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--HC-CCCEECCCCEEEECCCCCCCCCCE
Q ss_conf 121148643334444433314203210000011222211123223565677--42-561806997990088855478982
Q gi|254780283|r 205 VVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--RH-QLKMTNTNYIWTMPDSTATSIPGI 281 (321)
Q Consensus 205 v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~~-~~~~~~~g~i~~~~~~~~Ts~p~I 281 (321)
++++..+... +.+.....++..++++|.|++++|++||++.+ +. ++++ ++|+|. +|++||||+|+|
T Consensus 236 v~~i~~~~~~---------~~v~~~~~~~~~~i~~d~vl~a~Gr~Pn~~~L~L~~~gv~~-d~G~I~-vd~~~~Ts~~~I 304 (462)
T PRK06416 236 AKKVEQTDDG---------VTVTLEAGGEEETIEADYVLVAVGRRPNTENLGLEELGVKT-DRGFIP-VDEQMRTNVPNI 304 (462)
T ss_pred EEEEEECCCE---------EEEEEECCCEEEEEEEEEEEEEECCCCCCCCCCCCCCCEEE-CCCCCC-CCCCCCCCCCCE
T ss_conf 9999972998---------99999539858999632999996640164434743025552-579700-566632599745
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 89701268844567899997999999999
Q gi|254780283|r 282 FAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 282 ya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
||+|||++.+ .+.+.|..||.+|+.|+.
T Consensus 305 yA~GDv~g~~-~l~~~A~~eg~~a~~ni~ 332 (462)
T PRK06416 305 YAIGDVVGGP-MLAHKASAEGKIAAEAIA 332 (462)
T ss_pred EEECCCCCCC-CCHHHHHHHHHHHHHHHC
T ss_conf 8714667887-765899999999999875
No 20
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=0 Score=323.73 Aligned_cols=294 Identities=24% Similarity=0.298 Sum_probs=215.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 67519999897779999999998699599996788-77568750100787747777897899986643232002322211
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
..++|+|||+|||||+||.+|+|+|++|+|||+.+ +||.|. +.+|.|+.+ .+++++-.+.++++|++|..+
T Consensus 326 tGKkVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGlL~-----yGIP~fRLp---k~vv~~ei~~l~~lGV~f~~n 397 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGLLT-----FGIPAFKLD---KSLLARRREIFSAMGIHFELN 397 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEE-----ECCCCCCCC---HHHHHHHHHHHHHCCCEEECC
T ss_conf 899899989778999999999976975799525777886675-----248622277---899999999998269889837
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEEE-CCCC----------CC-CCC--CCCCCC
Q ss_conf 3320112222222222222222100001477664-2024652774332021-0121----------11-111--111221
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGFG-VSAC----------AT-CDG--FFYKNK 147 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~-v~~~----------~~-~d~--~~~~~k 147 (321)
...+-+.+ .++-. -.||+|+||+|+. ++.++|||.+....++ +.+. .. .+. ...+||
T Consensus 398 ~~VGkDit-------l~eL~-~~yDAVfla~Ga~~~r~l~IpGedl~GV~~AleFL~~~~~~~~g~~~~~~~~~i~~~GK 469 (654)
T PRK12769 398 CEVGKDIS-------LESLL-EDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGL 469 (654)
T ss_pred CEECCCCC-------HHHHH-HCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 17687658-------99997-36998999517887866998997788838788889998886517755566676555575
Q ss_pred CEEEEECCCCCCCCEEEEECCC-CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-------
Q ss_conf 0000102556543101210133-32223443433--2211112112235544332222311211486433344-------
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIA-RRVTIVHRRSS--LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPL------- 217 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~-~~Vtli~r~~~--l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~------- 217 (321)
+|+||||||+|||+|....|+| ++|++++|+++ +.+++...+.+ +++++++++...++++.++......
T Consensus 470 ~VvVIGGGntAmDcaRtA~RlGA~~Vt~vYRR~~~eMPA~~~Ev~~A-~EEGV~f~~~~~P~ei~~de~G~V~gv~~~r~ 548 (654)
T PRK12769 470 NVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNA-REEGANFEFNVQPVALVLDEQGHVCGIRFLRT 548 (654)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCHHHHHHH-HHCCCEEEECCCCEEEEECCCCEEEEEEEEEE
T ss_conf 58998887246999999997599836604546723499875665578-85687899446857999779972999999998
Q ss_pred ---CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCH-HHHH-CCCCEECCCCEEEECCC---CCCCCCCEEEECCCCC
Q ss_conf ---44433314203210000011222211123223565-6774-25618069979900888---5547898289701268
Q gi|254780283|r 218 ---FPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNT-KIFR-HQLKMTNTNYIWTMPDS---TATSIPGIFAAGDVAD 289 (321)
Q Consensus 218 ---~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~-~~~~-~~~~~~~~g~i~~~~~~---~~Ts~p~Iya~GDv~~ 289 (321)
..+..|..-....+|+.+.+++|.||+|+|+.|+. .+++ .+++++++|.+.++.++ +|||+|+|||+||+..
T Consensus 549 ~lgepD~sGRr~p~~v~gse~~i~aD~VI~AiG~~p~~~~~~~~~gl~~~~~G~I~~d~~~~~~~~Ts~pgVFAgGD~v~ 628 (654)
T PRK12769 549 RLGEPDAQGRRRPVPIEGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAVR 628 (654)
T ss_pred EECCCCCCCCCCCEECCCCEEEEECCEEEECCCCCCCCCCCCCCCCEEECCCCCEEECCCCCCCCCCCCCCEEEECCCCC
T ss_conf 85562777876205648966999899999998899988753225681376999887367777654489999898078566
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84456789999799999999999974
Q gi|254780283|r 290 ERYRQAITAAAMGCMAALEVEHYLSI 315 (321)
Q Consensus 290 ~~~~~~~~A~~~G~~Aa~~i~~yl~~ 315 (321)
++ .++++||++|+.||.+|++||.-
T Consensus 629 G~-stVV~Ai~~Gr~AA~aId~yLg~ 653 (654)
T PRK12769 629 GA-DLVVTAMAEGRHAAQGIIDWLGV 653 (654)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 82-89999999999999999998686
No 21
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=100.00 E-value=0 Score=322.03 Aligned_cols=297 Identities=22% Similarity=0.281 Sum_probs=217.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 67519999897779999999998699599996788-77568750100787747777897899986643232002322211
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
+.++|+|||+|||||+||.+|+|+|++|+|||+.+ +||.|. +.+|.|+.+ .+++++-.+.++.+|++|..+
T Consensus 309 ~gkKVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~-----yGIP~fRLP---K~vv~rei~~l~~lGV~f~~n 380 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT-----FGIPPFKLD---KTVLSQRREIFTAMGIDFHLN 380 (639)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE-----ECCCCCCCC---HHHHHHHHHHHHHCCCEEEEC
T ss_conf 899899989758999999999975990699936888898685-----358745277---789999999998649889919
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCC-CCEEEEECCCCCCCEEE-CCCCC----------CCCCC---CCCCC
Q ss_conf 332011222222222222222210000147766-42024652774332021-01211----------11111---11221
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGS-EVKWLRLESEKKFQGFG-VSACA----------TCDGF---FYKNK 147 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~-~~~~~~ipG~~~~~~~~-v~~~~----------~~d~~---~~~~k 147 (321)
..++-+.+- ++-. -.||+|+||+|+ .++.++|||.+....+. +.+.. ..+.+ ..+||
T Consensus 381 ~~VGkDit~-------~eL~-~~yDAVflg~Ga~~~~~l~IpGedl~GV~~AlefL~~~~~~~~g~~~~~~~p~~~~~GK 452 (639)
T PRK12809 381 CEIGRDITF-------SDLT-SEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGK 452 (639)
T ss_pred CEECCCCCH-------HHHH-HHCCEEEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 677986889-------9997-31798999736788854898877787838769999999986438864445775455677
Q ss_pred CEEEEECCCCCCCCEEEEECC-CCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC-------
Q ss_conf 000010255654310121013-3322234434332--211112112235544332222311211486433344-------
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKI-ARRVTIVHRRSSL--RSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPL------- 217 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~-~~~Vtli~r~~~l--~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~------- 217 (321)
+|+||||||+|||+|....|+ +++|++++|+++. .+++...+.+ +++++++++...++++.++......
T Consensus 453 ~VVVIGGGntAmDcaRTA~RlGA~~VtivYRR~~~eMPA~~~Ev~~A-~EEGV~f~~~~~P~~i~~de~G~V~gv~~vr~ 531 (639)
T PRK12809 453 RVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNA-REEGVEFQFNVQPQYIACDEDGRLTAVGLIRT 531 (639)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEECCCH-HHCCEEEECCCCCEEEEECCCCEEEEEEEEEE
T ss_conf 79998998218999999998399877521547745799970030101-21873898278857999679863999999999
Q ss_pred ---CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCH-HHHH-CCCCEECCCCEEEECC---CCCCCCCCEEEECCCCC
Q ss_conf ---44433314203210000011222211123223565-6774-2561806997990088---85547898289701268
Q gi|254780283|r 218 ---FPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNT-KIFR-HQLKMTNTNYIWTMPD---STATSIPGIFAAGDVAD 289 (321)
Q Consensus 218 ---~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~-~~~~-~~~~~~~~g~i~~~~~---~~~Ts~p~Iya~GDv~~ 289 (321)
.....|.......+|+.+.+++|.||+|+|+.|+. .+++ .+++++++|.+.+++. ++|||+|+|||+||+..
T Consensus 532 ~lgepd~~GRr~p~~i~Gse~~i~aD~VI~AiG~~~~~~~~~~~~giel~~~G~I~~~~~~~~~~qTs~~gVFAgGD~v~ 611 (639)
T PRK12809 532 AMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGGDAVH 611 (639)
T ss_pred EECCCCCCCCEEEEEECCCEEEEECCEEEECCCCCCCCCCCCCCCCEEECCCCCEECCCCCCCCCCCCCCCEEECCCCCC
T ss_conf 95675888887347608936999899999988789988753346785588999886178777676689999998278786
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 84456789999799999999999974220
Q gi|254780283|r 290 ERYRQAITAAAMGCMAALEVEHYLSIHQS 318 (321)
Q Consensus 290 ~~~~~~~~A~~~G~~Aa~~i~~yl~~~~~ 318 (321)
+ ..++++||++|+.||.+|.+||....|
T Consensus 612 G-~stVV~AI~~Gr~AA~sI~~yl~~k~~ 639 (639)
T PRK12809 612 G-ADLVVTAMAAGRQAARDMLTLFDTKAS 639 (639)
T ss_pred C-CHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7-369999999999999999999874039
No 22
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=100.00 E-value=0 Score=322.29 Aligned_cols=296 Identities=25% Similarity=0.325 Sum_probs=222.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 6751999989777999999999869959999678-877568750100787747777897899986643232002322211
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
...+|+|||+|||||+||.+|+|.|++|+|||+- .+||.|. +.+|.|+.+ .+++++-.++++++|++|..+
T Consensus 431 ~~gKVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGvL~-----YGIPeFRLP---K~IV~~EI~~l~~lGVef~~n 502 (993)
T PRK12775 431 KIGKVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGVLQ-----YGIPSFRLP---RDIIDREIQRLKDIGVKFETN 502 (993)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEE-----ECCCCCCCC---HHHHHHHHHHHHHCCEEEECC
T ss_conf 898089978378899999999977996489716888997268-----437776788---899999999998789499838
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEEECCC------------CCCCCCCCCCCCCE
Q ss_conf 3320112222222222222222100001477664-2024652774332021012------------11111111122100
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGFGVSA------------CATCDGFFYKNKDV 149 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~v~~------------~~~~d~~~~~~k~v 149 (321)
.+.+-+.+-. .+..+ -.||+|+||+|+. |+.++|||.+....++-.. ++..|-....||+|
T Consensus 503 ~~VGkditl~--eL~~e----~gyDAVFIg~GA~~~~~lgIpGE~l~GV~sA~eFLtrvNLm~~~~~p~~dtPv~~GK~V 576 (993)
T PRK12775 503 KVVGKTFTIP--QLMND----RGFDAVFVAAGAGAPTFLGIPGEFAGRVYSANEFLTRINLMGGDKFPYLDTPVSVGKSV 576 (993)
T ss_pred CEECCCCCHH--HHHHC----CCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEE
T ss_conf 8865607899--99534----59898999558786731898988887817779999997633577677567864579969
Q ss_pred EEEECCCCCCCCEEEEECCCC-CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC----------C
Q ss_conf 001025565431012101333-2223443433--22111121122355443322223112114864333----------4
Q gi|254780283|r 150 IVVGGGNTAAEEALHLAKIAR-RVTIVHRRSS--LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEP----------P 216 (321)
Q Consensus 150 ~ViGgG~~g~e~A~~L~~~~~-~Vtli~r~~~--l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~----------~ 216 (321)
+||||||+|||+|....|+|. +|++++||++ +.+....++.+ ++++|+|++.+.+++++++.... .
T Consensus 577 vVIGGGNTAMDaARTA~RLGAe~VtivYRRte~EMPA~~eEV~~A-~EEGV~F~fL~~Pveiigde~G~V~gv~~~kMeL 655 (993)
T PRK12775 577 VVIGAGNTAMDCLRVARRLGAATVRCVYRRSEAEAPARIEEIRHA-KEEGVDFFFLHSPVEILVTEEGSVRAVRLQKMEL 655 (993)
T ss_pred EEECCCHHHHHHHHHHHHCCCCEEEEEEECCHHHCCCCHHHHHHH-HHCCCEEEECCCCCEEEECCCCEEEEEEEEEEEC
T ss_conf 998994369998899997699867999968856389889999879-8659399962697167865886398999998166
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH--CCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHH
Q ss_conf 4444333142032100000112222111232235656774--25618069979900888554789828970126884456
Q gi|254780283|r 217 LFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFR--HQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQ 294 (321)
Q Consensus 217 ~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~--~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~ 294 (321)
.+++..|.+-... .++..++++|.||+|+|+.||..+.. .+++++.+|.|.+++++++||.|||||.||+.+++ .+
T Consensus 656 GEPD~SGRRrPVP-~g~~~~le~D~VI~AIGq~pnpl~~~~~pgL~~~kwGtI~vDe~t~~Ts~pgVFAGGDiVtGa-aT 733 (993)
T PRK12775 656 GEPDERGRRKPMP-LDEFIELECDTVIYALGTKPNPIIGQATPGLALNKWGNIAADDDTQSTNMPGVFAGGDIVTGG-AT 733 (993)
T ss_pred CCCCCCCCCCCCC-CCCEEEEECCEEEECCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCEEECCCCCCCH-HH
T ss_conf 7989888947867-885488887999995779998310036888222587708989887766888876365612557-69
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7899997999999999999742
Q gi|254780283|r 295 AITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 295 ~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
++.||++|+.||.+|+.||-+-
T Consensus 734 VI~AmGaGrrAArsId~yLR~~ 755 (993)
T PRK12775 734 VILAMSAGRRAAKSIAAWLRLN 755 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999870899999999999659
No 23
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=322.64 Aligned_cols=288 Identities=21% Similarity=0.227 Sum_probs=208.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEEEECCCCCCC---CCCCCCCHHH-------HHHHH---
Q ss_conf 67519999897779999999998699599996788--775687501007877---4777789789-------99866---
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD--LGGQLMITESIENYP---GFATSIRGDW-------LMEQM--- 68 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~--~GG~l~~~~~i~n~~---g~~~~~~~~~-------l~~~~--- 68 (321)
.+|||+||||||||++||++++|.|++++|+|+++ .||+|.+..++.... .-....+.++ +..++
T Consensus 2 ~~YDviIIGaGpaG~~AA~~aa~~G~kV~liE~~~~~~GGtc~n~GCiPsk~ll~~a~~~~~~~~~~~~k~~~~~~l~~~ 81 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVERSKAMYGGTCINIGCIPTKTLLVAAEKNLSFEEVMATKNTVTSRLNAK 81 (438)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 95587999978899999999997889499994699876855477870401578987662799999999999999999889
Q ss_pred -HHHHHHCCCCCCCEEEEECCCCCCCCCCCCC-CCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf -4323200232221133201122222222222-22222100001477664202465277433202101211111111122
Q gi|254780283|r 69 -RQQAENFGTKIIQDLVVSVDLDRHPFLVETQ-SGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKN 146 (321)
Q Consensus 69 -~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~-~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~ 146 (321)
.+.++..+++++.++...++ ++.+.|... +..+++++++|||||+.|+.|+|||..+. ..+..+..+......+
T Consensus 82 ~~~~~~~~gv~~~~g~a~~~~--~~~v~V~~~~~~~~~~a~~iIIATGs~p~~l~ipG~~d~--~~v~~s~~~~~l~~~p 157 (438)
T PRK07251 82 NYAMLAGTGVDIYDAEAHFVS--NKVIEVTAGDEKQELTAETIVINTGAVSNVLPIPGLADS--KHVYDSTGIQNLEKLP 157 (438)
T ss_pred HHHHHHHCCCEEEEEEEEECC--CCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC--CEEEECHHHHHHHHCC
T ss_conf 999997489489997999816--848999559972999976898726787866998865687--5698017876465379
Q ss_pred CCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCC---CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 1000010255654310121013332223443433221--11121---122355443322223112114864333444443
Q gi|254780283|r 147 KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQ---EKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSV 221 (321)
Q Consensus 147 k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~---~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~ 221 (321)
++++|||||++|+|+|..|+++|++||++++++++.. ++... ++.+++.+|+++++..+.++.++...
T Consensus 158 ~~v~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~v~~~~~~------- 230 (438)
T PRK07251 158 KRLGILGGGNIGLEFAGLYNKLGSKVTVLDAASTFLPREEPSIAALAKQYMEEDGIEFLQNAHTTEVKNDGDQ------- 230 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCE-------
T ss_conf 7699988864588999999834876899984610024446366899999998669599968879999956997-------
Q ss_pred CCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 3314203210000011222211123223565677--4-256180699799008885547898289701268844567899
Q gi|254780283|r 222 SGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITA 298 (321)
Q Consensus 222 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A 298 (321)
+.+. .+..++++|.|++++|++||++.+ + .+++++++|+|+ +|++||||+|||||+|||++.+ .+++.|
T Consensus 231 --~~v~----~~~~~~~~d~vl~a~Gr~Pnt~~l~le~~gi~~~~~G~I~-vd~~~rTs~~~IyA~GDv~g~~-~l~~~A 302 (438)
T PRK07251 231 --VVVV----TEDETYRFDALLYATGRKPNTEPLQLENTDIELTERGAIK-VDKHCQTSVPGVFAVGDVNGGL-QFTYIS 302 (438)
T ss_pred --EEEE----EECCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEE-CCCCCCCCCCEEEEECCCCCCC-CCHHHH
T ss_conf --9999----8277898618999258766666567411474427899780-1897766786299922557886-773688
Q ss_pred HHHHHHHHHHHH
Q ss_conf 997999999999
Q gi|254780283|r 299 AAMGCMAALEVE 310 (321)
Q Consensus 299 ~~~G~~Aa~~i~ 310 (321)
..+|..|+.++.
T Consensus 303 ~~~~~~~~~~~~ 314 (438)
T PRK07251 303 LDDFRIVFSYLT 314 (438)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999970
No 24
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=322.92 Aligned_cols=294 Identities=24% Similarity=0.293 Sum_probs=205.4
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCC------------------CCCCCC--CC
Q ss_conf 9876751999989777999999999869959999678877568750100787------------------747777--89
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENY------------------PGFATS--IR 60 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~------------------~g~~~~--~~ 60 (321)
|+ ++|||+||||||||++||+++++.|++++|+|++..||.|.+..++... .|.... ..
T Consensus 1 M~-~~YDviVIG~GpaG~~aA~~aa~~G~kv~iiE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~gi~~~~~~d 79 (467)
T PRK07818 1 MM-THYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEPKYWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFD 79 (467)
T ss_pred CC-CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 98-56878999978899999999997899099994899687506176011399999999999999788867977424168
Q ss_pred HHHHHHHHHH-----------HHHHCCCCCCCEEEEECCCCCCCCCCCCC--CCCCCCCCEECCCCCCCCEEEEECCCCC
Q ss_conf 7899986643-----------23200232221133201122222222222--2222210000147766420246527743
Q gi|254780283|r 61 GDWLMEQMRQ-----------QAENFGTKIIQDLVVSVDLDRHPFLVETQ--SGDLWHADAVVIATGSEVKWLRLESEKK 127 (321)
Q Consensus 61 ~~~l~~~~~~-----------~~~~~~v~~~~~~V~~i~~~~~~~~v~~~--~g~~~~a~~lIiAtG~~~~~~~ipG~~~ 127 (321)
...+.++.++ .+++.+++++.++..-++ .+...|... .++.+++|++|||||+.|+.| ||.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~v~V~~~~~~~~~i~a~~iiIATGs~p~~l--Pg~~- 154 (467)
T PRK07818 80 YGAAFDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFTD--ANTLEVDLNDGGTETVTFDNAIIATGSSTRLL--PGTS- 154 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECEEEEEC--CCEEEEECCCCCEEEEEEEEEEECCCCCCCCC--CCCC-
T ss_conf 999999999999998756999998679399943079824--85138971789627999526898768876657--8867-
Q ss_pred CCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCC---CCCCCCCCCCCCCC
Q ss_conf 32021012111111111221000010255654310121013332223443433221--11121---12235544332222
Q gi|254780283|r 128 FQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQ---EKLFLQSNIDFLFD 202 (321)
Q Consensus 128 ~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~---~~~~~~~~i~~~~~ 202 (321)
+..+.+.++..++. ...+++++|||||++|+|+|..|+++|++||++++++++.. ++... .+.+++.+|+++++
T Consensus 155 ~~~~~~~~~~~~~~-~~lPk~v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~~l~~~d~~~~~~l~~~l~~~Gi~i~~~ 233 (467)
T PRK07818 155 LSENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIEKQYKKLGVKILTG 233 (467)
T ss_pred CCCCEEEEHHHHCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEECC
T ss_conf 88877853577233-45896699999879999999999832987777621131354422678999999998669888559
Q ss_pred CCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEEECCCCCCCCC
Q ss_conf 31121148643334444433314203210000011222211123223565677--4-25618069979900888554789
Q gi|254780283|r 203 TEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWTMPDSTATSIP 279 (321)
Q Consensus 203 ~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~~~~~~~Ts~p 279 (321)
+.++++..+... ..+.+....+++..++++|.|++++|++||++.+ + .+++++++|+|. +|++||||+|
T Consensus 234 ~~v~~i~~~~~~-------~~v~~~~~~~g~~~~i~~d~vlva~Gr~Pn~~~L~L~~~gv~~~~~G~I~-vd~~~~Ts~~ 305 (467)
T PRK07818 234 TKVESIRDNGDG-------VEVTVTVSKDGKSEELKADKVLQAIGFAPNVEGYGLEKTGVALTDRGAIG-IDDYMRTNVP 305 (467)
T ss_pred CEEEEEEECCCE-------EEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEECCCCCEE-ECCCCCCCCC
T ss_conf 768999984993-------99999988899469999525898116750444346413554787998586-8998864787
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8289701268844567899997999999999
Q gi|254780283|r 280 GIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 280 ~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
||||+|||++.+ .+++.|..+|.+|+.++.
T Consensus 306 ~IyA~GDv~g~~-~Lah~A~~eg~~a~~~i~ 335 (467)
T PRK07818 306 HIYAIGDVTAKL-QLAHVAEAQGVVAAETIA 335 (467)
T ss_pred EEEEEECCCCCC-CCCHHHHHHHHHHHHHHC
T ss_conf 399972268887-871489999999999865
No 25
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=320.74 Aligned_cols=289 Identities=24% Similarity=0.339 Sum_probs=203.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCC---------------CCC-----CCC---CCC
Q ss_conf 767519999897779999999998699599996788775687501007---------------877-----477---778
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIE---------------NYP-----GFA---TSI 59 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~---------------n~~-----g~~---~~~ 59 (321)
+++|||+||||||||++||+++++.|++++|+|++.+||.|.+..++. .++ |.. ..+
T Consensus 2 ~~~YDviVIG~GpaG~~AA~~aa~~G~kv~liE~~~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~~~~gi~~~~~~~ 81 (464)
T PRK05976 2 AKEYDLLIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALIHSAEVFHTAKKFAGASPLGISVQAPAL 81 (464)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCC
T ss_conf 97188999997889999999999789929999789979713636831479999999999998652111005354567653
Q ss_pred CHHHH-------HHHH----HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCEEE-EECCC
Q ss_conf 97899-------9866----43232002322211332011222222222222--22221000014776642024-65277
Q gi|254780283|r 60 RGDWL-------MEQM----RQQAENFGTKIIQDLVVSVDLDRHPFLVETQS--GDLWHADAVVIATGSEVKWL-RLESE 125 (321)
Q Consensus 60 ~~~~l-------~~~~----~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~--g~~~~a~~lIiAtG~~~~~~-~ipG~ 125 (321)
+-.++ .+++ ...+++.+++++.++..-++. +...|.+++ ++++++|++|||||+.|+.+ .+|..
T Consensus 82 d~~~~~~~~~~~~~~l~~~~~~~l~~~~v~~i~G~a~f~~~--~~v~V~~~~g~~~~i~a~~iIIATGs~P~~lp~~~~~ 159 (464)
T PRK05976 82 DFAKVQAWKDGIVDRLTKGVAALLKKGKVDVFHGIGRILDG--KTVSVETATGENEMIIPENLLIATGSRPVELPGLPFG 159 (464)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCC--CCEEEECCCCCCEEEEECEEEECCCCCCCCCCCCCCC
T ss_conf 89999999999999987889999986892899726886589--8114442788736998266998768886169976577
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCC---CCCCCCCCCCCC
Q ss_conf 4332021012111111111221000010255654310121013332223443433221--11121---122355443322
Q gi|254780283|r 126 KKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQ---EKLFLQSNIDFL 200 (321)
Q Consensus 126 ~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~---~~~~~~~~i~~~ 200 (321)
..+ +.. .........+|+++|||||++|+|+|..|+++|++||++++++++.. ++... .+.+++.+|+++
T Consensus 160 ~~~----~ts-~~~~~l~~~Pk~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~~l~~~D~~~~~~~~~~l~~~gi~i~ 234 (464)
T PRK05976 160 GEV----ISS-TEALSLETLPKSLVVVGGGYIGLEWGSMLRKFGVEVTVVEAADRILPTYDAELTKPVARLLKKLGVRVL 234 (464)
T ss_pred CCE----ECC-HHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEE
T ss_conf 667----820-463173548955999899689999999999539869999853655433388899999999997697998
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH-CCCCEE-CCCCEEEECCCCCCCC
Q ss_conf 22311211486433344444333142032100000112222111232235656774-256180-6997990088855478
Q gi|254780283|r 201 FDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFR-HQLKMT-NTNYIWTMPDSTATSI 278 (321)
Q Consensus 201 ~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~-~~~~~~-~~g~i~~~~~~~~Ts~ 278 (321)
+++.++++..+.. .......+|+..++++|.|++++|++||++.+. +...++ ++|+|. +|++||||+
T Consensus 235 ~~~~v~~~~~~~~----------~~~~~~~~g~~~~i~~D~vl~a~Gr~Pn~~~l~l~~~gv~~~~g~I~-Vd~~~~Ts~ 303 (464)
T PRK05976 235 TGAKVLGLTLDGG----------VLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDLDVEGGFIR-IDDFCQTSM 303 (464)
T ss_pred ECCEEEEEEECCC----------EEEEEECCCCEEEEEECEEEEECCCCCCCCCCCCCCCCEEECCCCEE-CCCCCCCCC
T ss_conf 0888999994399----------89999828977999836899914875563557732277662178362-467653588
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98289701268844567899997999999999
Q gi|254780283|r 279 PGIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 279 p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
|+|||+|||++.+ .+.+.|..+|.+|+.++.
T Consensus 304 ~~IyA~GDv~g~~-~l~~~A~~~g~~a~~~~~ 334 (464)
T PRK05976 304 RHIYAIGDVIGEP-MLAHRAMAQGEMVAEHIA 334 (464)
T ss_pred CEEEEEECCCCCC-CCCCHHHHHHHHHHHHHC
T ss_conf 7199960568987-773289999999999865
No 26
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=321.50 Aligned_cols=295 Identities=23% Similarity=0.309 Sum_probs=205.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-------CCCCCEEEEECCCCCC----------------C--CCC-
Q ss_conf 7675199998977799999999986995999967-------8877568750100787----------------7--477-
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-------SDLGGQLMITESIENY----------------P--GFA- 56 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-------~~~GG~l~~~~~i~n~----------------~--g~~- 56 (321)
+++|||+||||||||++||++|+|.|++++|+|+ ..+||+|.+..++... . |..
T Consensus 2 s~~YDviVIG~GpAG~~AA~~aa~~G~kValiE~~~~~~g~~~~GGtC~n~GCIPsK~L~~~a~~~~~~~~~~~~~Gi~~ 81 (475)
T PRK06327 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPAGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGISV 81 (475)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCEEC
T ss_conf 96188999998889999999999789919999725776778888014472770130999999999999987898658414
Q ss_pred --CCCCHHHHHHH-------H----HHHHHHCCCCCCCEEEEECCCCCCCCC--CCCCCCCCCCCCEECCCCCCCCEEEE
Q ss_conf --77897899986-------6----432320023222113320112222222--22222222210000147766420246
Q gi|254780283|r 57 --TSIRGDWLMEQ-------M----RQQAENFGTKIIQDLVVSVDLDRHPFL--VETQSGDLWHADAVVIATGSEVKWLR 121 (321)
Q Consensus 57 --~~~~~~~l~~~-------~----~~~~~~~~v~~~~~~V~~i~~~~~~~~--v~~~~g~~~~a~~lIiAtG~~~~~~~ 121 (321)
..+..+++..+ + ....+..+++++.++-.-+......++ +...++++++++++|||||+.|+.||
T Consensus 82 ~~~~~d~~~~~~~k~~~~~~~~~~~~~~~~~~~v~~~~G~a~f~~~~~~~~~v~v~~~~~~~i~a~~iiIATGs~p~~lp 161 (475)
T PRK06327 82 DGVKIDVAKMIGRKDTVVKQMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVKGEGETVVKAKNVIIATGSEPRHLP 161 (475)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCEEEEECCCCCCEEEECEEEECCCCCCCCCC
T ss_conf 67630799999999999999888999998716938999999996147884599983898509996879997899666699
Q ss_pred -ECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCC--CCCC---CCCCCCC
Q ss_conf -527743320210121111111112210000102556543101210133322234434332211--1121---1223554
Q gi|254780283|r 122 -LESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSE--KILQ---EKLFLQS 195 (321)
Q Consensus 122 -ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~~--~~~~---~~~~~~~ 195 (321)
+|...+ .+............+|+++|||+|++|+|+|..|+++|.+||++++++++... +... .+.+++.
T Consensus 162 ~~~~~~~----~~~ts~~~~~l~~~Pk~~~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~ 237 (475)
T PRK06327 162 GVPFDNE----IILDNEGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEALKAFTKQ 237 (475)
T ss_pred CCCCCCC----EEECCHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHC
T ss_conf 8887874----387367651613389679999674758999999995498599998536433445878899999988736
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEEECC
Q ss_conf 433222231121148643334444433314203210000011222211123223565677--4-2561806997990088
Q gi|254780283|r 196 NIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWTMPD 272 (321)
Q Consensus 196 ~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~~~~ 272 (321)
+|++++++.+.++....... .+.+. ..+++...+++|.|++++|++||++.+ + .+++++++|+|. +|+
T Consensus 238 gi~i~~~~~v~~v~~~~~~~-------~v~~~-~~~g~~~~~~~D~vlva~Gr~Pn~~~L~l~~~Gv~l~~~G~I~-vd~ 308 (475)
T PRK06327 238 GLDIHLGVKIGEIKTGGKGV-------SVAYT-DADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIP-VDD 308 (475)
T ss_pred CCEEEECCEEEEEEECCCEE-------EEEEE-CCCCCEEEEEEEEEEEECCCEECCCCCCCCCCCCCCCCCCCCC-CCC
T ss_conf 92997088999999548739-------99999-3899879999819999326361454558621387447899865-699
Q ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 855478982897012688445678999979999999999
Q gi|254780283|r 273 STATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 273 ~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 311 (321)
+||||+|+|||+|||++.+ .+++.|..+|.+|+.++..
T Consensus 309 ~~~Ts~p~IyA~GDv~g~~-~l~~~A~~eg~~a~~~~~g 346 (475)
T PRK06327 309 HCRTNVPNVYAIGDVVRGP-MLAHKAEEEGVAVAERIAG 346 (475)
T ss_pred CCCCCCCCEEECCCCCCCC-CCHHHHHHHHHHHHHHHCC
T ss_conf 7546997538710147887-7755999999999998669
No 27
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=100.00 E-value=0 Score=316.97 Aligned_cols=290 Identities=22% Similarity=0.266 Sum_probs=207.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 67519999897779999999998699599996788-77568750100787747777897899986643232002322211
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
..++|+|||+|||||+||.+|+|+|++|+|||+.+ +||++. +.+|.|+. ..+++++..+++..+|++|.++
T Consensus 142 ~gkkVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GGll~-----yGIP~~RL---pk~v~~~ei~~l~~~GV~~~~n 213 (472)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGGLLR-----YGIPDFKL---EKDVIDRRIELMEGEGIEFRTG 213 (472)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEE-----ECCCCCCC---CHHHHHHHHHHHHHCCCEEEEC
T ss_conf 899899989778999999999866975899725777775465-----31788555---3589999999998579789905
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCC-CCEEEEECCCCCCCEEECCCCC--------------CCCCCCCCCC
Q ss_conf 332011222222222222222210000147766-4202465277433202101211--------------1111111221
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGS-EVKWLRLESEKKFQGFGVSACA--------------TCDGFFYKNK 147 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~-~~~~~~ipG~~~~~~~~v~~~~--------------~~d~~~~~~k 147 (321)
..++-+. ++ ++- .-.||+|+||||+ .|+.++|||.+.. +|++.. .......+||
T Consensus 214 ~~VG~di-----t~--~~L-~~~yDAV~la~Ga~~~r~l~ipG~~~~---GV~~A~dfL~~~~~~~~~~~~~~~~~~~Gk 282 (472)
T PRK12810 214 VEVGKDI-----TA--EQL-LAEYDAVFLGGGAYKPRDLGIPGRDLD---GVHFAMDFLIQNTRVLGGEKDEPFILAKGK 282 (472)
T ss_pred EECCCCC-----CH--HHH-HCCCCEEEEECCCCCCCCCCCCCCCCC---CEEEHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 2318757-----69--998-505798999037787852787776678---858869999999875337876666322476
Q ss_pred CEEEEECCCCCCCCEEEEECCC-CCCCCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 0000102556543101210133-32223443433221111-------------211223554433222231121148643
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIA-RRVTIVHRRSSLRSEKI-------------LQEKLFLQSNIDFLFDTEVVDVIGSIP 213 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~-~~Vtli~r~~~l~~~~~-------------~~~~~~~~~~i~~~~~~~v~~i~g~~~ 213 (321)
+|+|||||++|+|+|....|+| ++|+...+.+. .++.. ..+. ..+.++++++...++++.++..
T Consensus 283 ~VvVIGGGntAmD~arta~R~GA~~V~rr~~~~m-p~~~~~~~~~~~~~~~~~ev~~-A~eEGv~~~~~~~p~~i~~~~g 360 (472)
T PRK12810 283 HVVVIGGGDTGMDCVGTSIRQGAKSVTQRDIMPM-PPSRRNKNNPWPYWPMKFEVSN-AHEEGVEREFNVQTKEFEGENG 360 (472)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCC-CCCCCCCCCCHHHHHHHHHHHH-HHHCCCCEEECCCCEEEEECCC
T ss_conf 5899898668999999999738968999751148-8132332372323346888999-9974882573357369981498
Q ss_pred CCCCCCCCCCEEE------CCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHC-CCCEECCCCEEEECCCCCCCCCCEEEEC
Q ss_conf 3344444333142------03210000011222211123223565-67742-5618069979900888554789828970
Q gi|254780283|r 214 EPPLFPSVSGVRL------HNKKEGNFFERNVDGIFIAIGYKPNT-KIFRH-QLKMTNTNYIWTMPDSTATSIPGIFAAG 285 (321)
Q Consensus 214 ~~~~~~~~~~v~~------~~~~~g~~~~i~~D~vi~a~G~~pn~-~~~~~-~~~~~~~g~i~~~~~~~~Ts~p~Iya~G 285 (321)
...... ...+.+ ....+|+.+.+++|.||+|+|++|+. .+++. +++++++|.+.+++.++|||+|||||+|
T Consensus 361 ~v~gv~-~~~~~~~~g~~~~~~~~g~e~~i~aD~VI~AiGq~~~~~~~~~~~gl~~d~~G~i~vd~~~~~Ts~~gVFA~G 439 (472)
T PRK12810 361 KVTGVK-VVETELGKGRRKFEPVPGSEFVLPADLVLLAMGFTGPEPEWLAQFGVELDERGRVAADEGAYQTSNPKVFAAG 439 (472)
T ss_pred EEEEEE-EEEEEECCCCCCEEECCCCEEEEECCEEEECCCCCCCCCCCCCCCCCEECCCCCEEECCCCCCCCCCCEEEEC
T ss_conf 699999-9997761788762566995499989999998888888632222568028799988868998745999999836
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1268844567899997999999999999742
Q gi|254780283|r 286 DVADERYRQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 286 Dv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
||..+ ..++++||++|+.||.+|++||..+
T Consensus 440 D~~~G-~~~vv~Ai~~Gr~AA~~I~~~L~G~ 469 (472)
T PRK12810 440 DMRRG-QSLVVWAIAEGRQAARAIDAYLMGS 469 (472)
T ss_pred CCCCC-HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 87778-1699999999999999999984799
No 28
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=100.00 E-value=0 Score=315.84 Aligned_cols=291 Identities=24% Similarity=0.344 Sum_probs=218.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 76751999989777999999999869959999678-87756875010078774777789789998664323200232221
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQ 81 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~ 81 (321)
...++|+|||||||||+||++|+++|++|+|||+. .+||.+. +.+|.|+. ..+++++..+.+.++|+++.+
T Consensus 135 ~tgkkVAVIGaGPAGLsaA~~La~~G~~VtVfE~~~~~GGml~-----~GIP~yRL---P~~vl~~ei~~i~~~GV~~~~ 206 (560)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYQLRRLGHAVTIFEAGPKLGGMMR-----YGIPGYRL---PRDVLDAEIQRILDLGVEVKL 206 (560)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEE-----CCCCCCCC---CHHHHHHHHHHHHHCCCEEEE
T ss_conf 7899899989778999999999976985899676788898883-----56875447---589999999999964967983
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEE-ECCCCCC--CCCCCCCCCCEEEEECCCC
Q ss_conf 13320112222222222222222100001477664-202465277433202-1012111--1111112210000102556
Q gi|254780283|r 82 DLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGF-GVSACAT--CDGFFYKNKDVIVVGGGNT 157 (321)
Q Consensus 82 ~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~-~v~~~~~--~d~~~~~~k~v~ViGgG~~ 157 (321)
+.-..-+. ++ ++-+ -.||+|++|+|+. ++.++|||.+.-... .+.+... .......||+|+||||||+
T Consensus 207 n~~vg~di-----t~--~~L~-~~yDAV~la~Ga~~~r~l~i~G~d~~gV~~al~fL~~~~~g~~~~~Gk~VvVIGGGnt 278 (560)
T PRK12771 207 GVRVGEDI-----TL--EQLE-GDYDAVFVAIGAQLGKRLPIPGEDAANVLDAVSFLRAVEEGEPPKLGKRVVVIGGGNT 278 (560)
T ss_pred CCEECCCC-----CH--HHHH-CCCCEEEECCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCEEEEECCCCH
T ss_conf 87844656-----79--9971-7788899916878776089788776552405999999756897556886899899822
Q ss_pred CCCCEEEEECCC-CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEC-------
Q ss_conf 543101210133-32223443433--22111121122355443322223112114864333444443331420-------
Q gi|254780283|r 158 AAEEALHLAKIA-RRVTIVHRRSS--LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLH------- 227 (321)
Q Consensus 158 g~e~A~~L~~~~-~~Vtli~r~~~--l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~------- 227 (321)
|||+|....|+| ++|++++|+++ +.+++...+.+ .+.+|++++...++++.++... ++++++.
T Consensus 279 AmD~artA~RlGa~~V~ivyrr~~~~MpA~~~Ei~~A-~eEGV~~~~~~~p~~i~~~~g~------v~gl~~~~~~~~e~ 351 (560)
T PRK12771 279 AMDAARTARRLGAEEVVIVYRRTREEMPAHAFEIDDA-LREGVEINWLRTPVEVEKDEDG------VTGLRVEKMELDEK 351 (560)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCCCHHHHHHH-HHCCCEEEECCCCEEEECCCCE------EEEEEEEEEEECCC
T ss_conf 8999999997389769998314420289998999878-7479568963464799806985------98999999998899
Q ss_pred --CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC-CCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHH
Q ss_conf --3210000011222211123223565677425-6180699799008885547898289701268844567899997999
Q gi|254780283|r 228 --NKKEGNFFERNVDGIFIAIGYKPNTKIFRHQ-LKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCM 304 (321)
Q Consensus 228 --~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~~-~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~ 304 (321)
...+|+.+.+++|.||+|+|+.|+..+++.. ....++|++.+++++++||+|||||+||+..++ .+++.|+++|+.
T Consensus 352 g~~~~~g~~~~i~aD~VI~AiGq~~d~~~l~~~~~~~~~~g~i~~~~~~~~Ts~~gVFa~GD~v~Gp-~~vv~AI~~Gr~ 430 (560)
T PRK12771 352 GEPGPTGEFFTLEADMVVLAIGQDTDSEFLEGLPGVRNGRGGLVVDRNFRMTGRPGVFAGGDMVPGE-RTVTTAVGHGKK 430 (560)
T ss_pred CCCCCCCCCEEEECCEEEECCCCCCCCCHHCCCCCEEECCCCEEECCCCCCCCCCCEEECCCCCCCC-HHHHHHHHHHHH
T ss_conf 8878899726754689999225788730002365547179988847876657998867436546684-189999999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999997422
Q gi|254780283|r 305 AALEVEHYLSIHQ 317 (321)
Q Consensus 305 Aa~~i~~yl~~~~ 317 (321)
||.+|++||....
T Consensus 431 AA~~Id~yL~G~~ 443 (560)
T PRK12771 431 AARHIDAFLRGEH 443 (560)
T ss_pred HHHHHHHHHCCCC
T ss_conf 9999999966898
No 29
>PRK13748 putative mercuric reductase; Provisional
Probab=100.00 E-value=0 Score=317.44 Aligned_cols=287 Identities=24% Similarity=0.313 Sum_probs=205.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCC-----------------C-CCCCC---CCC
Q ss_conf 87675199998977799999999986995999967887756875010078-----------------7-74777---789
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIEN-----------------Y-PGFAT---SIR 60 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n-----------------~-~g~~~---~~~ 60 (321)
...+|||+|||+||||++||+++++.|.+|+|+|++.+||.|.+..++.. + .|+.. .+.
T Consensus 95 ~~~~yDliVIG~GpaG~~AA~~Aa~~G~kValVE~~~lGGTClN~GCIPSK~Ll~aA~~~~~~r~~~~~~Gi~~~~~~vd 174 (561)
T PRK13748 95 NEGPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGTIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATAPTID 174 (561)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEC
T ss_conf 89987689989588999999999978997999947996886656760448999999999999974501477116775467
Q ss_pred HHHHHHH-------HHH-----HHHH-CCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCEEEEECCC
Q ss_conf 7899986-------643-----2320-023222113320112222222222222--222100001477664202465277
Q gi|254780283|r 61 GDWLMEQ-------MRQ-----QAEN-FGTKIIQDLVVSVDLDRHPFLVETQSG--DLWHADAVVIATGSEVKWLRLESE 125 (321)
Q Consensus 61 ~~~l~~~-------~~~-----~~~~-~~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~a~~lIiAtG~~~~~~~ipG~ 125 (321)
...+.++ +++ .++. .+++++.++..-++ .+...|...+| ++++++++|||||++|+.|+|||+
T Consensus 175 ~~~~~~~k~~~v~~l~~~~~~~~l~~~~gV~vi~G~A~f~~--~~tv~V~~~dg~~~~i~a~~iIIATGS~P~~P~ipGl 252 (561)
T PRK13748 175 RSKLLAQQQARVDELRHAKYEGILEGNPAITVLHGEARFKD--DQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGL 252 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEC--CCEEEEEECCCCEEEEEECEEEECCCCCCCCCCCCCC
T ss_conf 99999999999999874468899743798499984999953--9889999358964899418699947887667888876
Q ss_pred CCCCEEECCCCCCCCCC--CCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCCC---CCCCCCCCCCCC
Q ss_conf 43320210121111111--1122100001025565431012101333222344343322-11112---112235544332
Q gi|254780283|r 126 KKFQGFGVSACATCDGF--FYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLR-SEKIL---QEKLFLQSNIDF 199 (321)
Q Consensus 126 ~~~~~~~v~~~~~~d~~--~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~-~~~~~---~~~~~~~~~i~~ 199 (321)
+.-. ++...+.+ ...+++++|||||++|+|+|..|+++|.+||++.|..-+. .++.. ..+.+++.+|++
T Consensus 253 ~~~~-----~lTSd~~l~l~~lP~~l~IIGgG~IG~E~A~~f~~lGs~VTiv~r~~ll~~~D~ei~~~l~~~l~~~GI~i 327 (561)
T PRK13748 253 KETP-----YWTSTEALASDTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEV 327 (561)
T ss_pred CCCC-----EECCHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 7786-----27745640744388738998986899999999986498489996576567649999999999999769799
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEEECCCCCC
Q ss_conf 22231121148643334444433314203210000011222211123223565677--4-25618069979900888554
Q gi|254780283|r 200 LFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWTMPDSTAT 276 (321)
Q Consensus 200 ~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~~~~~~~T 276 (321)
++++.++++..+... +.+. .+..++++|.|++++|++||++-+ + .+++++++|+|. +|++|||
T Consensus 328 ~~~~~v~~v~~~~~~---------~~v~----~~~g~i~~d~vLvA~GR~PNt~~LgLe~~GV~~d~~G~I~-Vd~~~rT 393 (561)
T PRK13748 328 LEHTQASQVAHDDGE---------FVLT----TNHGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIV-IDQGMRT 393 (561)
T ss_pred ECCCEEEEEEECCCE---------EEEE----ECCCEEEECEEEEECCCEEECCCCCHHHCCCEECCCCCEE-CCCCCCC
T ss_conf 769789999972998---------9999----6896698578999606103454425154287146899872-4887430
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7898289701268844567899997999999999
Q gi|254780283|r 277 SIPGIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 277 s~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
|+|+|||+|||++.+ .+++.|+.+|.+|+.|+.
T Consensus 394 s~p~IYA~GDv~g~~-~Lah~A~~eG~~aa~ni~ 426 (561)
T PRK13748 394 SVPHIYAAGDCTDQP-QFVYVAAAAGTRAAINMT 426 (561)
T ss_pred CCCCEEEEECCCCCC-CCHHHHHHHHHHHHHHHC
T ss_conf 786299961016787-556899999999999861
No 30
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=313.99 Aligned_cols=289 Identities=22% Similarity=0.327 Sum_probs=200.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCEEEEECCCCCC-----------------CCCC---CCCCH
Q ss_conf 7675199998977799999999986995999967-8877568750100787-----------------7477---77897
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-SDLGGQLMITESIENY-----------------PGFA---TSIRG 61 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-~~~GG~l~~~~~i~n~-----------------~g~~---~~~~~ 61 (321)
+.+|||+||||||||++||+++++.|++++|+|+ +.+||.|.+..++... .|+. ..++.
T Consensus 2 ~~~yDvvVIGgGpaG~~aA~~aa~~G~kV~liE~~~~~GGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~Gi~~~~~~~d~ 81 (472)
T PRK06467 2 EIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKIDI 81 (472)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCH
T ss_conf 97787899998889999999999789969999637997656123580322999999999999867674577258874279
Q ss_pred HHHHHHH-----------HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCEEEE-ECCCCC
Q ss_conf 8999866-----------432320023222113320112222222222222--22210000147766420246-527743
Q gi|254780283|r 62 DWLMEQM-----------RQQAENFGTKIIQDLVVSVDLDRHPFLVETQSG--DLWHADAVVIATGSEVKWLR-LESEKK 127 (321)
Q Consensus 62 ~~l~~~~-----------~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~a~~lIiAtG~~~~~~~-ipG~~~ 127 (321)
+.+..+. ...++..+++++.++-.-++ .+...+...++ ++++++++|||||+.|..+| +|....
T Consensus 82 ~~~~~~~~~~v~~l~~~~~~~~~~~gV~~i~G~a~f~~--~~~v~v~~~~g~~~~l~a~~ivIATGs~p~~~p~~~~~~~ 159 (472)
T PRK06467 82 DKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GNTVEVTGEDGKTEVIEFDNAIIAAGSRPIQLPFIPHEDP 159 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCEEECC--CCEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 99999999999999889999998779569715067548--9803643388864899877999946996656899887887
Q ss_pred CCEEECCCCCCCCCCCC--CCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCC---CCCCCCCCCCC
Q ss_conf 32021012111111111--221000010255654310121013332223443433221--111211---22355443322
Q gi|254780283|r 128 FQGFGVSACATCDGFFY--KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQE---KLFLQSNIDFL 200 (321)
Q Consensus 128 ~~~~~v~~~~~~d~~~~--~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~~---~~~~~~~i~~~ 200 (321)
.. +..++.+.+ .+++++|||||++|+|+|..|+++|++||++++++++.. ++...+ +.++ .+++++
T Consensus 160 ~~------~ts~~~l~l~~~P~~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~D~~~~~~~~~~l~-~~i~i~ 232 (472)
T PRK06467 160 RI------WDSTDALELKEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIS-KQFNIM 232 (472)
T ss_pred EE------EECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHH-HCCCEE
T ss_conf 58------82366511013995599995647289999999852986899960455454349999999999998-578099
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH---HCCCCEECCCCEEEECCCCCCC
Q ss_conf 2231121148643334444433314203210000011222211123223565677---4256180699799008885547
Q gi|254780283|r 201 FDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF---RHQLKMTNTNYIWTMPDSTATS 277 (321)
Q Consensus 201 ~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~---~~~~~~~~~g~i~~~~~~~~Ts 277 (321)
+++.++.+..+... ..+.+.+ ..+...++++|.|++++|++||++.+ +.+++++++|+|. +|++||||
T Consensus 233 ~~~~v~~~~~~~~~-------~~v~~~~-~~~~~~~~~~D~vlva~Gr~Pn~~~l~l~~~gv~~~~~G~I~-vd~~~~Ts 303 (472)
T PRK06467 233 LETKVTAVEAKEDG-------IYVTMEG-KKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIR-VDKQCRTN 303 (472)
T ss_pred ECCEEEEEEEECCE-------EEEEEEE-CCCCEEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCC
T ss_conf 64479999993996-------9999980-898706998368999078610123457755687317999872-49975358
Q ss_pred CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 898289701268844567899997999999999
Q gi|254780283|r 278 IPGIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 278 ~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
+|+|||+|||++.+ .+++.|..+|.+|+.++.
T Consensus 304 ~p~IyA~GDv~g~~-~lah~A~~qg~~aa~~i~ 335 (472)
T PRK06467 304 VPHIFAIGDIVGQP-MLAHKGVHEGHVAAEVIA 335 (472)
T ss_pred CCCEEECCCCCCCC-CCHHHHHHHHHHHHHHHC
T ss_conf 86358611246887-766799999999999866
No 31
>PRK13984 putative oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=313.06 Aligned_cols=292 Identities=22% Similarity=0.267 Sum_probs=207.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 67519999897779999999998699599996788-77568750100787747777897899986643232002322211
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
..++|+|||+|||||+||.+|+|+|++|+|||+.+ +||.+. +.+|.|+.+ .+++++-.+.++.+|++|..+
T Consensus 282 tGKKVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGlL~-----yGIP~fRLp---k~vv~rei~~i~~~GV~f~~n 353 (604)
T PRK13984 282 KGKKVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGVMR-----YGIPSYRLP---DEALDKDIAFIEALGVKIHTN 353 (604)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEE-----ECCCCCCCC---HHHHHHHHHHHHHCCCEEECC
T ss_conf 899899989868999999999986986899745677897233-----158722287---899999999999729899768
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEEE-CCCCCCC------CC-CCCCCCCEEEEE
Q ss_conf 3320112222222222222222100001477664-2024652774332021-0121111------11-111221000010
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGFG-VSACATC------DG-FFYKNKDVIVVG 153 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~-v~~~~~~------d~-~~~~~k~v~ViG 153 (321)
..++-+.+- ++-. -.||+|+||+|+. |+.++|||.+....+. +.+.... ++ ....+|+|+|||
T Consensus 354 ~~VGkDit~-------eeL~-~~yDAVfLa~Ga~~~r~L~IpGedl~GV~~AldfL~~~~~~~~g~~~~~~~gK~VVVIG 425 (604)
T PRK13984 354 TRVGKDISL-------EELR-EKHDAVFVSTGFTLGRSTRIPGSDHPNVIQALPLLREIRDYLRGEGPKPKIPRSLVVIG 425 (604)
T ss_pred CEECCCCCH-------HHHH-HCCCEEEEECCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCCCCCCCCCCEEEEEC
T ss_conf 577984789-------9997-05899999538887766898998888817679999999865425787666697589989
Q ss_pred CCCCCCCCEEEEECC------CCCCCCC-CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC------
Q ss_conf 255654310121013------3322234-4343--322111121122355443322223112114864333444------
Q gi|254780283|r 154 GGNTAAEEALHLAKI------ARRVTIV-HRRS--SLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLF------ 218 (321)
Q Consensus 154 gG~~g~e~A~~L~~~------~~~Vtli-~r~~--~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~------ 218 (321)
|||+|||+|....|+ +.+|+++ .|+. ++.+++...+.+ .++++++++...++++..+.......
T Consensus 426 GGnTAmDcaRTA~Rl~a~~~Ga~~V~vv~yrR~~~eMPA~~~Ev~~A-~EEGV~f~~~~~P~ei~~e~GkV~gv~~~~~l 504 (604)
T PRK13984 426 GGNVAMDIARSMARLQKMEYGKVNVTVTSLERTFEEMPADMEEIEEG-LEEGVKIYPGWGPMEVVIENDKVKGVKFKKCL 504 (604)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCHHHCCCCHHHHHHH-HHCCCEEEECCCCEEEEECCCEEEEEEEEEEE
T ss_conf 81889999999987301324774305517878734289988988999-86887899477768999419969999999998
Q ss_pred --CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC--CCEE-CCCCEEEECCCCCCCCCCEEEECCCCCCCHH
Q ss_conf --4433314203210000011222211123223565677425--6180-6997990088855478982897012688445
Q gi|254780283|r 219 --PSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQ--LKMT-NTNYIWTMPDSTATSIPGIFAAGDVADERYR 293 (321)
Q Consensus 219 --~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~~--~~~~-~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~ 293 (321)
...+|.......+|+.+.+++|.||+|+|+.|+..++.+. ..++ ++|.+. +|+++|||+|+|||+||+..++ .
T Consensus 505 ~~~D~~GR~~p~~~~gse~~i~aD~VI~AiGq~p~~~~l~~~~~~~l~~~rG~I~-~d~~~~Ts~pgVFAgGD~v~G~-s 582 (604)
T PRK13984 505 EVFDEEGRFNPKFDESEKIVVDADMVVEAIGQAPDYSYLPEEIKSKLEFVRGRIK-TNEYRQTSVPWLFAGGDIVHGP-D 582 (604)
T ss_pred EEECCCCCEEEEECCCCEEEEECCEEEECCCCCCCCCHHHHHHCCCCCCCCCEEE-ECCCCCCCCCCEEECCCCCCCC-H
T ss_conf 7798999880155699569998999999985888710002353112325688598-5899877899988777868762-8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6789999799999999999974
Q gi|254780283|r 294 QAITAAAMGCMAALEVEHYLSI 315 (321)
Q Consensus 294 ~~~~A~~~G~~Aa~~i~~yl~~ 315 (321)
+++||++|+.||.+|++||..
T Consensus 583 -VV~AIa~GR~AA~~Id~yL~g 603 (604)
T PRK13984 583 -IIHGVADGYWAAKGIDQYLRK 603 (604)
T ss_pred -HHHHHHHHHHHHHHHHHHHCC
T ss_conf -999999999999999999775
No 32
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=100.00 E-value=0 Score=312.83 Aligned_cols=288 Identities=26% Similarity=0.312 Sum_probs=205.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCC---------------C--CCCC-----CCCCHHH
Q ss_conf 5199998977799999999986995999967887756875010078---------------7--7477-----7789789
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIEN---------------Y--PGFA-----TSIRGDW 63 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n---------------~--~g~~-----~~~~~~~ 63 (321)
|||+||||||||++||+++++.|++|+|+|++.+||.|.+..++.. . .|+. ..+..++
T Consensus 2 ~dviVIG~GpaG~~AA~~aa~~G~kV~lIE~~~~GGtC~n~GCiPsK~Li~~a~~~~~~~~~~~~G~~~~~~~~~~d~~~ 81 (467)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGVGGAAVLTDCVPSKTLIASAEVRTELRRAADLGVRFDLEDAKVDLPQ 81 (467)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCHHH
T ss_conf 81999874889999999999787959999679978467677836679999999999999763525804478755506999
Q ss_pred HHHHH-----------HHHHHHCCCCCCCEEEEECCCC----CCCCCCCCCC--CCCCCCCEECCCCCCCCEEEEECCCC
Q ss_conf 99866-----------4323200232221133201122----2222222222--22221000014776642024652774
Q gi|254780283|r 64 LMEQM-----------RQQAENFGTKIIQDLVVSVDLD----RHPFLVETQS--GDLWHADAVVIATGSEVKWLRLESEK 126 (321)
Q Consensus 64 l~~~~-----------~~~~~~~~v~~~~~~V~~i~~~----~~~~~v~~~~--g~~~~a~~lIiAtG~~~~~~~ipG~~ 126 (321)
+.++. ..++++.+++++.++..-++.. .+...+...+ ++++++|++|||||++|+.||..+.+
T Consensus 82 ~~~r~~~~~~~~~~~~~~~l~~~gv~~i~G~a~f~d~~~~~~~~~V~v~~~~g~~~~i~a~~iIIATGs~P~~lp~~~~d 161 (467)
T PRK07845 82 VNARVKRLARAQSADIRAQLERAGVRVIAGRGRLDDDTPGLGPHRVKVTTADGTEEELEADVVLIATGASPRILPTAEPD 161 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCEEEEEECCCCEEEEEECEEEECCCCCCCCCCCCCCC
T ss_conf 99999999998666699998757968997389992066567787799993589758999296999589987779997889
Q ss_pred CCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCC---CCCCCCCCCCCCCCC
Q ss_conf 332021012111111111221000010255654310121013332223443433221--111---211223554433222
Q gi|254780283|r 127 KFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKI---LQEKLFLQSNIDFLF 201 (321)
Q Consensus 127 ~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~---~~~~~~~~~~i~~~~ 201 (321)
+..+..+.........+++++|||+|++|+|+|..|+++|++||++++++++.. ++. ..++.+++.++++++
T Consensus 162 ---g~~~~ts~~~~~l~~~P~~l~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~~~~L~~~d~~~~~~~~~~l~~~gv~i~~ 238 (467)
T PRK07845 162 ---GERILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAAVLEEVFARRGMTLLK 238 (467)
T ss_pred ---CCEEEEEHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCEEEEC
T ss_conf ---85178205531710089869998987999999999997398799999557445431888999999999976909972
Q ss_pred CCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH---HCCCCEECCCCEEEECCCCCCCC
Q ss_conf 231121148643334444433314203210000011222211123223565677---42561806997990088855478
Q gi|254780283|r 202 DTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF---RHQLKMTNTNYIWTMPDSTATSI 278 (321)
Q Consensus 202 ~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~---~~~~~~~~~g~i~~~~~~~~Ts~ 278 (321)
++.+.++..+.. ++.+. .++.+++++|.|++++|++||++.+ +.+++++++|+|. +|++||||+
T Consensus 239 ~~~~~~v~~~~~---------~~~v~---~~~g~~i~~d~vl~a~Gr~Pn~~~lgL~~~gv~~~~~G~I~-vd~~~rTs~ 305 (467)
T PRK07845 239 RSRAESVTRTGD---------GVLVT---LTDGRTVEGSHALMAVGSVPNTAGLGLEEVGVELGPGGHIT-VDRVSRTSV 305 (467)
T ss_pred CCEEEEEEECCC---------EEEEE---ECCCCEEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCCC-CCCCCCCCC
T ss_conf 887999998098---------26999---88997998779999545025525557032187547788566-798766587
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 98289701268844567899997999999999
Q gi|254780283|r 279 PGIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 279 p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
|+|||+|||++.+ .+.+.|..+|.+|+.|+.
T Consensus 306 ~~IyA~GDv~g~~-~l~h~A~~qg~ia~~n~~ 336 (467)
T PRK07845 306 PGIYAAGDCTGVL-PLASVAAMQGRIAMYHAL 336 (467)
T ss_pred CEEEEEECCCCCC-CCHHHHHHHHHHHHHHHH
T ss_conf 7099970457886-765589999999999970
No 33
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=100.00 E-value=0 Score=311.77 Aligned_cols=287 Identities=22% Similarity=0.253 Sum_probs=209.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 67519999897779999999998699599996788-77568750100787747777897899986643232002322211
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
..++|+|||+|||||+||.+|+|.|++|+|||+.+ +||.+. +.+|.|+.+ .+++++-.+.+++.|++|.++
T Consensus 549 tgKKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~-----yGIP~fRLP---k~vIdreI~~l~~~GV~f~tn 620 (1032)
T PRK09853 549 SRHPVAVIGAGPAGLAAGYFLARAGHPVTVFEREENAGGVVK-----NIIPEFRIP---AELIQHDIDFVAAHGVKFEYG 620 (1032)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE-----ECCCCCCCC---HHHHHHHHHHHHHCCCEEEEC
T ss_conf 899799989688999999999977993699815897884267-----358876789---999999999999779699969
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEEECCCCCCC---CCCCCCCCCEEEEECCCCC
Q ss_conf 3320112222222222222222100001477664-20246527743320210121111---1111122100001025565
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGFGVSACATC---DGFFYKNKDVIVVGGGNTA 158 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~v~~~~~~---d~~~~~~k~v~ViGgG~~g 158 (321)
+ +.+ +++ ++-..-.||+|+||+|+. ++.++|||.++-....+.+.... +.....||+|+||||||+|
T Consensus 621 -v-g~d-----itl--e~L~~eGyDAVfLa~GA~~~r~L~IpGe~~gV~~AleFL~~~~~~~~~~~~GK~VVVIGGGNTA 691 (1032)
T PRK09853 621 -C-SPD-----LTV--EQLKNQGYHYVLLAIGADKNGGLKLAGDNQNVWKSLPFLREYNKGTADLKLGKHVVVVGAGNTA 691 (1032)
T ss_pred -C-CCC-----CCH--HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEEEECCCHHH
T ss_conf -9-998-----889--9996579999999458898887999986578077799999874389876689938998984799
Q ss_pred CCCEEEEECC-C-CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-----CCCCCCCCEEECCC
Q ss_conf 4310121013-3-32223443433--22111121122355443322223112114864333-----44444333142032
Q gi|254780283|r 159 AEEALHLAKI-A-RRVTIVHRRSS--LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEP-----PLFPSVSGVRLHNK 229 (321)
Q Consensus 159 ~e~A~~L~~~-~-~~Vtli~r~~~--l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~-----~~~~~~~~v~~~~~ 229 (321)
||+|....|+ | ++|++++||++ ..+.+...+.+ .+.+|++.+...+.++.++.... ....+..|.+.. .
T Consensus 692 MDcARTAlRl~GAe~VtivYRRt~~eMPA~~eEie~A-~eEGVef~~L~aP~~i~~dG~l~~~~M~LGEpDasGRrrP-V 769 (1032)
T PRK09853 692 MDCARAALRVPGVEKVTVVYRRTLKEMPAWREEYEEA-LHDGVEFKFLLNPESFDADGTLTCRVMSLGEPDASGRRRP-V 769 (1032)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCHHHCCCCHHHHHHH-HHCCEEEEEECCCEEEECCCCEEEEEEEECCCCCCCCCCC-C
T ss_conf 9999998750688658996058632089998999988-7547499980188699437858999999768588888765-0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1000001122221112322356567742-561806997990088855478982897012688445678999979999999
Q gi|254780283|r 230 KEGNFFERNVDGIFIAIGYKPNTKIFRH-QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALE 308 (321)
Q Consensus 230 ~~g~~~~i~~D~vi~a~G~~pn~~~~~~-~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~ 308 (321)
.+|+.+++++|.||+|+|+.|+..+++. +++++++|++.+ |+.+|||+|||||+|||..++ .++++||++|+.||.+
T Consensus 770 ~~Ge~~~i~aDtVI~AIGq~~d~~~le~~GIeld~~G~I~v-De~~~TS~pGVFAaGD~v~Gp-STVV~AIadGRkAA~a 847 (1032)
T PRK09853 770 ETGETVTLHADTLITAIGEQVDTELLNAMGIPLDKNGWPDV-NHNGETNLTNVFMIGDVQRGP-SSIVAAIADARRATDA 847 (1032)
T ss_pred CCCCEEEEECCEEEECCCCCCCCCCCCCCCCEECCCCCEEE-CCCCCCCCCCEEECCCCCCCH-HHHHHHHHHHHHHHHH
T ss_conf 69964899889999988789986510256811889998877-989987899977730767677-8999999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780283|r 309 VEH 311 (321)
Q Consensus 309 i~~ 311 (321)
|..
T Consensus 848 Il~ 850 (1032)
T PRK09853 848 ILS 850 (1032)
T ss_pred HHH
T ss_conf 985
No 34
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=100.00 E-value=0 Score=309.04 Aligned_cols=289 Identities=22% Similarity=0.248 Sum_probs=208.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 767519999897779999999998699599996788-7756875010078774777789789998664323200232221
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQ 81 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~ 81 (321)
+..++|+|||+|||||+||.+|+|.|++|+|||+.+ +||.+. +.+|.|+.+ .+++++-.++++..|++|.+
T Consensus 535 ~~gkKVAVIGsGPAGLaAA~~Lar~Gh~VTVFEk~~~~GGmL~-----yGIP~fRLP---kevI~reI~~i~~~GV~f~t 606 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK-----NIIPEFRIS---AESIQKDIELVKFHGVEFKY 606 (1012)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE-----ECCCCCCCC---HHHHHHHHHHHHHCCEEEEE
T ss_conf 8998899989778999999999977995699815897885478-----558877789---99999999999968969997
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEEECCCCCC---CCCCCCCCCCEEEEECCCC
Q ss_conf 13320112222222222222222100001477664-2024652774332021012111---1111112210000102556
Q gi|254780283|r 82 DLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGFGVSACAT---CDGFFYKNKDVIVVGGGNT 157 (321)
Q Consensus 82 ~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~v~~~~~---~d~~~~~~k~v~ViGgG~~ 157 (321)
+ +. ..+++ ++-..-.||+|+||+|+. ++.++|||..+-....+.+... -+.....||+|+||||||+
T Consensus 607 n----vg---~ditl--eeL~~egYDAVfLa~GA~~~r~L~IpGd~~gV~~AleFL~~~~~~~~~~~~GK~VVVIGGGNT 677 (1012)
T TIGR03315 607 G----CS---PDLTV--AELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNT 677 (1012)
T ss_pred C----CC---CCCCH--HHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHHHCCCCCCCCCCEEEEECCCHH
T ss_conf 9----98---88889--999658999999956899887799997656858679999972117996568995899898479
Q ss_pred CCCCEEEEECC-C-CCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC----CCCCCCCCCEEECCC
Q ss_conf 54310121013-3-32223443433--2211112112235544332222311211486433----344444333142032
Q gi|254780283|r 158 AAEEALHLAKI-A-RRVTIVHRRSS--LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPE----PPLFPSVSGVRLHNK 229 (321)
Q Consensus 158 g~e~A~~L~~~-~-~~Vtli~r~~~--l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~----~~~~~~~~~v~~~~~ 229 (321)
|||+|....|+ | .+|++++|+++ ..+.+...+.+ .+.+|++++...++++...... ........|.+.. .
T Consensus 678 AMDcARTAlRl~GAe~VtvvYRRt~~eMPA~~eEie~A-~EEGVef~~L~aP~~iedG~l~~~~m~LgepD~sGRrrP-v 755 (1012)
T TIGR03315 678 AMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEA-LEDGVDFKELLSPESFEDGTLTCEVMKLGEPDASGRRRP-V 755 (1012)
T ss_pred HHHHHHHHHHCCCCCEEEEEECCCHHCCCCCHHHHHHH-HHCCEEEEEEECCEEEECCEEEEEEEEECCCCCCCCCCC-C
T ss_conf 99999998750788757998258621089998999877-753817999548858988879999999767278888875-1
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 1000001122221112322356567742-561806997990088855478982897012688445678999979999999
Q gi|254780283|r 230 KEGNFFERNVDGIFIAIGYKPNTKIFRH-QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALE 308 (321)
Q Consensus 230 ~~g~~~~i~~D~vi~a~G~~pn~~~~~~-~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~ 308 (321)
..++.+.+++|.||+|+|+.++..+++. +++++++|++.+++.++|||+|||||+|||..++ .+++.||++|+.||.+
T Consensus 756 ~~ge~~~i~aDtVI~AIGQ~~d~~~l~~~GIeld~rG~I~vD~~t~~TS~pGVFAaGD~v~Gp-stVV~AIadGR~AA~a 834 (1012)
T TIGR03315 756 GTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRGP-ATIVEAIADGRKAANA 834 (1012)
T ss_pred CCCCEEEEECCEEEECCCCCCCCCHHHCCCCEECCCCCEEECCCCCCCCCCCEEEEECCCCCH-HHHHHHHHHHHHHHHH
T ss_conf 799648998899999878899854021248408899898868887878999988800667577-8999999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780283|r 309 VEH 311 (321)
Q Consensus 309 i~~ 311 (321)
|..
T Consensus 835 Il~ 837 (1012)
T TIGR03315 835 ILS 837 (1012)
T ss_pred HHH
T ss_conf 986
No 35
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=0 Score=306.95 Aligned_cols=292 Identities=27% Similarity=0.359 Sum_probs=211.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEEECCCCC------------------CCCCCC---CCC
Q ss_conf 76751999989777999999999869959999678-87756875010078------------------774777---789
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIEN------------------YPGFAT---SIR 60 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~~~~i~n------------------~~g~~~---~~~ 60 (321)
..+||++|||+||||+.||+++++.|++++++|+. .+||.|.+..|+.. ..|... .++
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~~d 81 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPKID 81 (454)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCC
T ss_conf 85154899897777999999999679977999306986765574673144999999999999864142365205778538
Q ss_pred HHHHHHHH-----------HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCC
Q ss_conf 78999866-----------4323200232221133201122222222222222221000014776642024652774332
Q gi|254780283|r 61 GDWLMEQM-----------RQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQ 129 (321)
Q Consensus 61 ~~~l~~~~-----------~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~ 129 (321)
..+++++. ....+..+++++.++..-++ .+...|..++.++++++++|||||++|+.|++|+.+...
T Consensus 82 ~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~~ 159 (454)
T COG1249 82 FEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGAR 159 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECC--CCEEEEECCCCEEEEECEEEEECCCCCCCCCCCCCCCCE
T ss_conf 999999999999987677999997489889998999888--998999068754998278999069987789988988874
Q ss_pred EEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCC---CCCCCCCCCCCCCCC
Q ss_conf 021012111111111221000010255654310121013332223443433221--111211---223554433222231
Q gi|254780283|r 130 GFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQE---KLFLQSNIDFLFDTE 204 (321)
Q Consensus 130 ~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~~---~~~~~~~i~~~~~~~ 204 (321)
...-.... . ...-+|+++|||||.+|+|+|..++++|.+||+++|++++.. ++...+ +.+++.+++++.++.
T Consensus 160 ~~~s~~~l--~-~~~lP~~lvIiGgG~IG~E~a~~~~~LG~~VTive~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~ 236 (454)
T COG1249 160 ILDSSDAL--F-LLELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTK 236 (454)
T ss_pred EEECCCCC--C-CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEECCCE
T ss_conf 88353413--6-01079879998988899999999998699789994688778877999999999999858959983536
Q ss_pred EEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH--HH-CCCCEECCCCEEEECCCCCCCCCCE
Q ss_conf 12114864333444443331420321000001122221112322356567--74-2561806997990088855478982
Q gi|254780283|r 205 VVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKI--FR-HQLKMTNTNYIWTMPDSTATSIPGI 281 (321)
Q Consensus 205 v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~--~~-~~~~~~~~g~i~~~~~~~~Ts~p~I 281 (321)
++++...... -.+.+.+ ++..++++|.+++++|++||++- ++ -+++++++|+|.++ .+|+||+|+|
T Consensus 237 v~~~~~~~~~-------v~v~~~~---g~~~~~~ad~vL~AiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~I 305 (454)
T COG1249 237 VTAVEKKDDG-------VLVTLED---GEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGI 305 (454)
T ss_pred EEEEEECCCE-------EEEEEEC---CCCCEEEEEEEEEEECCCCCCCCCCCHHCCCEECCCCCEEEC-CCCCCCCCCE
T ss_conf 9999816980-------8999946---977679984999932786688887805329146799988768-9504389998
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 897012688445678999979999999999
Q gi|254780283|r 282 FAAGDVADERYRQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 282 ya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 311 (321)
||+|||++.++ +++.|+.||.+||.+|..
T Consensus 306 yA~GDV~~~~~-Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 306 YAIGDVIGGPM-LAHVAMAEGRIAAENIAG 334 (454)
T ss_pred EEEEECCCCCC-CHHHHHHHHHHHHHHHHC
T ss_conf 98451589977-567899989999999707
No 36
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=100.00 E-value=0 Score=307.37 Aligned_cols=286 Identities=26% Similarity=0.342 Sum_probs=205.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCC-----------------CCCCCC-----CCCCHHH
Q ss_conf 519999897779999999998699599996788775687501007-----------------877477-----7789789
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIE-----------------NYPGFA-----TSIRGDW 63 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~-----------------n~~g~~-----~~~~~~~ 63 (321)
.+|+||||||||++||+++++.|++|+|+|++.+||.|.+..++. +..|+. ..+...+
T Consensus 1 ~~vvVIG~GpaG~~aA~~aa~~G~kV~lIEk~~~GGtCln~GCiPsK~ll~~a~~~~~~~~~~~~Gi~~~~~~~~id~~~ 80 (458)
T PRK06912 1 SKLVIIGGGPAGYVAAITAAQNGKEVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDIVRKANHYGITLNNGSISIDWKQ 80 (458)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH
T ss_conf 94999900889999999999785959999589978740336848789999999999999766745950127875528999
Q ss_pred HHHHH-----------HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCEEEEECCCCCCCEE
Q ss_conf 99866-----------432320023222113320112222222222222-222100001477664202465277433202
Q gi|254780283|r 64 LMEQM-----------RQQAENFGTKIIQDLVVSVDLDRHPFLVETQSG-DLWHADAVVIATGSEVKWLRLESEKKFQGF 131 (321)
Q Consensus 64 l~~~~-----------~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g-~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~ 131 (321)
+..+. +..+++.++++++++..-++ .+...|...++ ++++++++|||||+.|+.||+++.+. .
T Consensus 81 ~~~~~~~~v~~~~~~~~~~l~~~~v~~i~G~a~f~~--~~~v~V~~~~~~~~i~a~~iiIATGs~P~~~p~~~~d~---~ 155 (458)
T PRK06912 81 MQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFET--DHRVRVEYGGKEEVVDAEQFIIATGSEPTELPFAPFDG---K 155 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCEEEECEEEEEC--CCEEEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCC---C
T ss_conf 999999999999999999997389189915279803--88689986996189974189998898774699788788---7
Q ss_pred ECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCC---CCCCCCCCCCCCCCCCEE
Q ss_conf 1012111111111221000010255654310121013332223443433221--11121---122355443322223112
Q gi|254780283|r 132 GVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQ---EKLFLQSNIDFLFDTEVV 206 (321)
Q Consensus 132 ~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~---~~~~~~~~i~~~~~~~v~ 206 (321)
.+.++..+......+++++|||+|++|+|+|..|+++|++||++++++++.. ++... .+.+++.+|++++++.++
T Consensus 156 ~~~~s~~~~~l~~lP~~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~il~~~d~~~~~~l~~~l~~~Gi~i~~~~~v~ 235 (458)
T PRK06912 156 WILNSSHAMSLPSIPKSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLEEDGVEIFTGAALK 235 (458)
T ss_pred EEEECHHHCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 69846554061227965999899747999999999659879999844667830567899999999986695998288799
Q ss_pred ECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH---HCCCCEECCCCEEEECCCCCCCCCCEEE
Q ss_conf 1148643334444433314203210000011222211123223565677---4256180699799008885547898289
Q gi|254780283|r 207 DVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF---RHQLKMTNTNYIWTMPDSTATSIPGIFA 283 (321)
Q Consensus 207 ~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~---~~~~~~~~~g~i~~~~~~~~Ts~p~Iya 283 (321)
++..+... +.+. .+++..++++|.|++++|++||++.+ +.+++++++| + .+|++||||+|+|||
T Consensus 236 ~i~~~~~~---------~~~~--~~~~~~~~~~d~vl~a~Gr~Pn~~~l~l~~~gv~~~~~g-I-~Vd~~~~Ts~p~IyA 302 (458)
T PRK06912 236 GLNNYKKQ---------ASFE--YEGSIQEVNPDFVLVAVGRKPRVQQLNLEKAGIQFSNKG-I-SVNEHMQTNVPHIYA 302 (458)
T ss_pred EEECCCCE---------EEEE--ECCCEEEEECCEEEEECCCCCCCCCCCHHHCCEEECCCC-E-ECCCCCCCCCCEEEE
T ss_conf 99866987---------9999--589638996479999048766425567144183676995-4-746666768764999
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 701268844567899997999999999
Q gi|254780283|r 284 AGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 284 ~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
+|||++.+ .+.+.|..+|.+|+.++.
T Consensus 303 ~GDv~g~~-~l~h~A~~~g~~aa~~~~ 328 (458)
T PRK06912 303 CGDVIGGI-QLAHVAFHEGTTAALHAS 328 (458)
T ss_pred EECCCCCC-CCCHHHHHHHHHHHHHHC
T ss_conf 62378987-773289999999999757
No 37
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=100.00 E-value=0 Score=309.65 Aligned_cols=285 Identities=24% Similarity=0.297 Sum_probs=207.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 51999989777999999999869--959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAM--LKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g--~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
.+|+||||||||++||.+++|.+ .+++++|++...+ +....+..|.+-... ....+..+..++..+.++++..+
T Consensus 1 MkvVIIG~G~AG~saA~~l~~~~~~~~I~v~e~~~~~~--y~~~~lp~~~~~~~~-~~~~~~~~~~~~~~~~gi~~~~~~ 77 (443)
T PRK09564 1 MKIIIIGGTAAGTSAAAKAKRLNKELEIVVYEKTDIIS--FGACGLPYFVGGFFD-DPNNMIARTPEEFIKSGIDVKTEH 77 (443)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCC--CCCCHHHHHHCCCCC-CHHHHHHHCHHHHHHCCCEEEECC
T ss_conf 96999996099999999998149399999994889877--765520344405558-989987419999998799999388
Q ss_pred EEEECCCCCCCCCCCC-CCCCC--CCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCC-CC-------CCCCCEEE
Q ss_conf 3320112222222222-22222--21000014776642024652774332021012111111-11-------12210000
Q gi|254780283|r 83 LVVSVDLDRHPFLVET-QSGDL--WHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDG-FF-------YKNKDVIV 151 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~-~~g~~--~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~-~~-------~~~k~v~V 151 (321)
+|++++.+.+...+.. ..++. .+||+||||||+.|+.|++||.+. .+++++.+++. .. ..+|+++|
T Consensus 78 ~v~~id~~~k~v~~~~~~~~~~~~~~yD~LiiATGs~p~~p~i~g~~~---~~v~~~~~~~d~~~l~~~~~~~~~k~vvV 154 (443)
T PRK09564 78 EVVKVDFKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINL---ENVYTLRSMEDGLALKKLLKKKEIKRIVI 154 (443)
T ss_pred EEEEEECCCCEEEEEECCCCCEEECCCCEEEEECCCCCCCCCCCCCCC---CCEEEECCHHHHHHHHHHHHHCCCCEEEE
T ss_conf 899997468648998468761661346789996167523699887566---66567657899999999765127965999
Q ss_pred EECCCCCCCCEEEEECCCCCCCCCCCCCCCCC---CCCC---CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEE
Q ss_conf 10255654310121013332223443433221---1112---11223554433222231121148643334444433314
Q gi|254780283|r 152 VGGGNTAAEEALHLAKIARRVTIVHRRSSLRS---EKIL---QEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVR 225 (321)
Q Consensus 152 iGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~---~~~~---~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~ 225 (321)
||||++|+|+|..|+++|++||++++.+++.. ++.. .++.+++.++++++++.++++.++.. ...+.
T Consensus 155 iGgG~ig~E~A~~l~~~G~~Vtiv~~~~~~l~~~~d~~~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~-------~~~v~ 227 (443)
T PRK09564 155 IGAGFIGLEVVEAAKKLGKNVRIIQLEKRILPDSFDKEITDVMEEELREKGVELHTSEFVKSLIGEDK-------VEGVV 227 (443)
T ss_pred ECCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEEECCC-------EEEEE
T ss_conf 99709999999999866988999995783455667899999999999977979998998999992698-------99999
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCC---------HHHHH
Q ss_conf 203210000011222211123223565677425618069979900888554789828970126884---------45678
Q gi|254780283|r 226 LHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADER---------YRQAI 296 (321)
Q Consensus 226 ~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~---------~~~~~ 296 (321)
. +..++++|.|++++|++||+++++..+++.++|+|. +|++||||+|+|||+|||+... ..+++
T Consensus 228 ~------~~~~i~~D~vi~a~G~~Pn~~~l~~~~~~~~~g~I~-Vde~~~Ts~~~IyA~GD~~~~~~~~~~~~~~~~l~~ 300 (443)
T PRK09564 228 T------NKGEYEADVVILSTGIKPNTEFLEDQLKTLKNGAII-VDEYGETSIENIYSAGDCATVYNIVSGKNVYVPLAT 300 (443)
T ss_pred E------CCCEEEEEEEEECCCCCCCHHHHHCCCEECCCCEEE-ECCCCCCCCCCEEEEECCHHHCCCCCCCCEEEEHHH
T ss_conf 7------798897238999558853507876284203499798-689802788999999657310355578856865478
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99997999999999
Q gi|254780283|r 297 TAAAMGCMAALEVE 310 (321)
Q Consensus 297 ~A~~~G~~Aa~~i~ 310 (321)
.|..+|.+||.++.
T Consensus 301 ~A~~~g~iaa~n~~ 314 (443)
T PRK09564 301 TANKLGRIVGENLA 314 (443)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 89999899998605
No 38
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=100.00 E-value=0 Score=309.14 Aligned_cols=288 Identities=20% Similarity=0.266 Sum_probs=206.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCCEEEEECCCCC---------CCCCCCCC-CHHHHHHHHHH-
Q ss_conf 67519999897779999999998699599996788--7756875010078---------77477778-97899986643-
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD--LGGQLMITESIEN---------YPGFATSI-RGDWLMEQMRQ- 70 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~--~GG~l~~~~~i~n---------~~g~~~~~-~~~~l~~~~~~- 70 (321)
++|||+||||||||++||+++++.|++|+|||++. .||.|.+..++.. ...|.... ...+..+.+++
T Consensus 2 ~~yDviVIG~GpaG~~aA~~aa~~G~~ValIEk~~~~~GGtCln~GCiPsK~Li~~a~~~~d~~~~~~~~~~~~~~~~~~ 81 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRNK 81 (441)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 97898999978899999999997899299997589987732456685888999999987257999998799999998755
Q ss_pred ----HHHHCCCCCCCEEEEECCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCC
Q ss_conf ----2320023222113320112222222222222-22210000147766420246527743320210121111111112
Q gi|254780283|r 71 ----QAENFGTKIIQDLVVSVDLDRHPFLVETQSG-DLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYK 145 (321)
Q Consensus 71 ----~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g-~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~ 145 (321)
..+..+++++.++..-++. +...|...+| .+++++++|||||++|+.|+|||.+...+ +......-.....
T Consensus 82 ~~~~~~~~~~v~~i~G~a~f~~~--~~v~V~~~~g~~~l~a~~ivIATGs~p~~p~ipg~~~~~~--v~~s~~~~~l~~l 157 (441)
T PRK08010 82 NFHNLADMPNIDVIDGQAEFINN--HSLRVHRPDGNLEIHGEKIFINTGAQSVVPPIPGITTTPG--VYDSTGLLNLKEL 157 (441)
T ss_pred CHHHHHHCCCCEEEEEEEEECCC--CCEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCE--EECHHHHHCCCCC
T ss_conf 39888542695899989998579--8237764899899982589993377654555687578753--9850785252116
Q ss_pred CCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCC---CCCCCCCCCCCCCCCEEECCCCCCCCCCCCC
Q ss_conf 21000010255654310121013332223443433221--111211---2235544332222311211486433344444
Q gi|254780283|r 146 NKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQE---KLFLQSNIDFLFDTEVVDVIGSIPEPPLFPS 220 (321)
Q Consensus 146 ~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~~---~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~ 220 (321)
+++++|||||++|+|+|..|+++|++||++++.+++.. ++...+ +.+++.+|++++++.++++..+...
T Consensus 158 P~~l~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~~il~~~D~~~~~~l~~~l~~~Gi~i~~~~~v~~i~~~~~~------ 231 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQ------ 231 (441)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCEEEEEEECCCE------
T ss_conf 96799989858999999999975987889704673266311468999999998788599738679999953998------
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHH
Q ss_conf 33314203210000011222211123223565677--4-25618069979900888554789828970126884456789
Q gi|254780283|r 221 VSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAIT 297 (321)
Q Consensus 221 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~ 297 (321)
+.+. ++..++++|.|++++|++||++.+ + .+++++++|++. +|++||||.|+|||+|||++.+ .+++.
T Consensus 232 ---~~v~----~~~~~~~~d~vlva~Gr~Pn~~~L~le~~gv~~~~~G~I~-Vd~~~~Ts~~~IyA~GDv~g~~-~lah~ 302 (441)
T PRK08010 232 ---VQVH----SEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIV-VDKYLHTTADNIWAMGDVTGGL-QFTYI 302 (441)
T ss_pred ---EEEE----ECCCEEEEEEEEEECCCCCCCCCCCCHHCCCCCCCCCCEE-ECCCCCCCCCCEEEEECCCCCC-CCHHH
T ss_conf ---9999----7686786648999447665544456032285357889886-6898873887689970268986-76368
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9997999999999
Q gi|254780283|r 298 AAAMGCMAALEVE 310 (321)
Q Consensus 298 A~~~G~~Aa~~i~ 310 (321)
|..+|.+|+.++.
T Consensus 303 A~~e~~~~~~~i~ 315 (441)
T PRK08010 303 SLDDYRIVRDELL 315 (441)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999983
No 39
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=100.00 E-value=0 Score=307.53 Aligned_cols=291 Identities=25% Similarity=0.304 Sum_probs=220.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 7675199998977799999999986995999967-887756875010078774777789789998664323200232221
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-SDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQ 81 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~ 81 (321)
..+++|+|||+|||||+||.+|+|.|++|++||+ +.+||.|. +.+|.|+.+ .+++++-.+.++.+|++|.+
T Consensus 304 ~~~~kVAVIGsGPAGLs~A~~Lar~Gy~VTVFEalh~~GGvL~-----YGIPeFRLP---K~IV~~EI~~l~~lGV~f~~ 375 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTIFEAFHDLGGVLR-----YGIPEFRLP---NQLIDDVVEKIKLLGGRFVK 375 (944)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE-----ECCCCCCCC---HHHHHHHHHHHHHCCEEEEE
T ss_conf 6798679988576899999999977993399944787885589-----558766687---89999999999967839997
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEEECCCCCC-----------CCCC--CCCCC
Q ss_conf 13320112222222222222222100001477664-2024652774332021012111-----------1111--11221
Q gi|254780283|r 82 DLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGFGVSACAT-----------CDGF--FYKNK 147 (321)
Q Consensus 82 ~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~v~~~~~-----------~d~~--~~~~k 147 (321)
+.+.+-+.+ .++-..-.|+++++|+|+. |+.++|||.+....++-..+.+ .+-. ...||
T Consensus 376 n~~VGk~~t-------l~eL~~eGydAVfIg~GAg~p~~l~IpGE~L~GV~sA~EfLtrvNlm~a~~~~~~tP~~~~~GK 448 (944)
T PRK12779 376 NFVVGKTAT-------LEDLKAEGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDRYETPLPEVKGK 448 (944)
T ss_pred CCEECCCCC-------HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 856477688-------9999768999899974788875689888777682568999998643123566456864267898
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-----------
Q ss_conf 000010255654310121013332223443433--2211112112235544332222311211486433-----------
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS--LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPE----------- 214 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~--l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~----------- 214 (321)
+|+||||||+|||+|....|+|.+|++++||++ +.+....++. .++++|+|.+-+.+++++|+...
T Consensus 449 ~VvVIGGGNtAMDaARTA~RlGA~VtiVYRRt~~EMPAr~EEi~h-A~EEGV~F~~L~~P~e~iGde~g~~v~~~~~~~M 527 (944)
T PRK12779 449 NVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHH-ALEEGINLAVLRAPREFIGDDHTHFVTHALLDVN 527 (944)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEEECCHHHCCCCHHHHHH-HHHCCCEEEEECCCHHHEECCCCCEEEEEEEEEE
T ss_conf 799989956699999998852987899984587658988999988-9857928998149665524468977889999985
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH--CCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCH
Q ss_conf 344444333142032100000112222111232235656774--256180699799008885547898289701268844
Q gi|254780283|r 215 PPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFR--HQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERY 292 (321)
Q Consensus 215 ~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~--~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~ 292 (321)
...+++..|.+-... .|+...+++|.||+|+|..||.-+.. .+++++.+|.|.+++++++||.|||||.||+..+ .
T Consensus 528 eLGEPDaSGRRrPvp-~g~~e~i~~D~VI~AiG~~pNpli~~t~p~L~~~k~G~I~vd~~t~~Ts~~gVfAGGD~vrG-~ 605 (944)
T PRK12779 528 ELGEPDKSGRRSPKP-TGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEAGSQRTSIKDVYSGGDAARG-G 605 (944)
T ss_pred ECCCCCCCCCCCCCC-CCCEEEEECCEEEECCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEECCCCCCC-H
T ss_conf 358988778978877-79716977799999057899951013687730167851998855576677777633550245-6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 5678999979999999999
Q gi|254780283|r 293 RQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 293 ~~~~~A~~~G~~Aa~~i~~ 311 (321)
.+++-||++|+.||..|-.
T Consensus 606 aTVIlAmgdG~~AAkei~~ 624 (944)
T PRK12779 606 STAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 7898875545999999854
No 40
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=100.00 E-value=0 Score=302.87 Aligned_cols=292 Identities=21% Similarity=0.274 Sum_probs=200.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCEEEEECCCCC-----------------CCCC----CCCCCH
Q ss_conf 67519999897779999999998699599996-7887756875010078-----------------7747----777897
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIA-GSDLGGQLMITESIEN-----------------YPGF----ATSIRG 61 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie-~~~~GG~l~~~~~i~n-----------------~~g~----~~~~~~ 61 (321)
++|||+||||||||++||+++++.|++|+|+| ++.+||.|.+..++.. +.++ ...+.-
T Consensus 2 ~~YDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~GGtC~n~GCiPsK~Ll~~a~~~~~~~~~~~~~~g~~~~~~~d~ 81 (466)
T PRK06115 2 KSYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLNL 81 (466)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCH
T ss_conf 84698999978899999999997899399996799964652045756699999999999986344020387573462589
Q ss_pred HHHHHH-------H----HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCEEEEECCCCCC
Q ss_conf 899986-------6----432320023222113320112222222222222--222100001477664202465277433
Q gi|254780283|r 62 DWLMEQ-------M----RQQAENFGTKIIQDLVVSVDLDRHPFLVETQSG--DLWHADAVVIATGSEVKWLRLESEKKF 128 (321)
Q Consensus 62 ~~l~~~-------~----~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~a~~lIiAtG~~~~~~~ipG~~~~ 128 (321)
..+..+ + +..+++.+++++.++-.-.+ .+...|...+| .+++++++|||||+.|+.| ||...
T Consensus 82 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~v~V~~~~g~~~~i~a~~iiIATGs~P~~~--pg~~~- 156 (466)
T PRK06115 82 AQMMKQKDESVTALTKGVEFLFRKNKVDWIKGWGRLDG--VGKVVVKAEDGSETQLEAKDIVIATGSEPTPL--PGVTI- 156 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEC--CCCEEEECCCCCEEEEEEEEEEECCCCCCCCC--CCCCC-
T ss_conf 99999999999999999999986189479952599954--99418985899779999568999989987699--97565-
Q ss_pred CEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCC---CCCCCCCCCCCCCCC
Q ss_conf 2021012111111111221000010255654310121013332223443433221--11121---122355443322223
Q gi|254780283|r 129 QGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQ---EKLFLQSNIDFLFDT 203 (321)
Q Consensus 129 ~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~---~~~~~~~~i~~~~~~ 203 (321)
.+..+............+|+++|||||++|+|+|..|+++|++||++++++++.. ++... ++.+++.+|++++++
T Consensus 157 d~~~~~ts~~~~~l~~lPk~l~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~lL~~~D~~~~~~l~~~l~~~gi~i~~~~ 236 (466)
T PRK06115 157 DNQRIIDSTGALSLPEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDGETAKTLQKALAKQGMRFKLGS 236 (466)
T ss_pred CCCEEECCCCCCCHHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCEEEECC
T ss_conf 99569715240035448967999958589999999998619847899833421434341236888889987694999589
Q ss_pred CEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEEECCCCCCCCCC
Q ss_conf 1121148643334444433314203210000011222211123223565677--4-256180699799008885547898
Q gi|254780283|r 204 EVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWTMPDSTATSIPG 280 (321)
Q Consensus 204 ~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~~~~~~~Ts~p~ 280 (321)
.++++...... ..+.+.....++..++++|.|++++|++||++.+ + .+++++++| ++ +|+++|||+|+
T Consensus 237 ~v~~~~~~~~~-------~~~~~~~~~~~~~~~i~~D~vl~a~Gr~Pn~~~L~Le~~gv~~~~~g-i~-vd~~~~Ts~~~ 307 (466)
T PRK06115 237 KVTQATAGADG-------VSLTLEPAAGGAAESLQADYVLVAIGRRPYTQGLGLESVGLETDKRG-ML-ANEHHRTSVPG 307 (466)
T ss_pred EEEEEEECCCE-------EEEEEEECCCCCEEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCC-CC-CCCCCCCCCCC
T ss_conf 89999984996-------99999975588504897169999416765776567200287217997-78-37765447887
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 289701268844567899997999999999
Q gi|254780283|r 281 IFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 281 Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
|||+|||++.+ .+.+.|..+|..|+.++.
T Consensus 308 IyA~GDv~g~~-~l~h~A~~eg~~~~~~i~ 336 (466)
T PRK06115 308 VWVIGDVTSGP-MLAHKAEDEAVACIERIA 336 (466)
T ss_pred EEEEECCCCCC-CCCHHHHHHHHHHHHHHC
T ss_conf 79842378986-770589999999999975
No 41
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=100.00 E-value=0 Score=306.98 Aligned_cols=294 Identities=25% Similarity=0.331 Sum_probs=217.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCCCEEEEECCCC-----------CC-------CC-C--CCCCCH
Q ss_conf 51999989777999999999869---9599996788775687501007-----------87-------74-7--777897
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAM---LKPVIIAGSDLGGQLMITESIE-----------NY-------PG-F--ATSIRG 61 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g---~~v~iie~~~~GG~l~~~~~i~-----------n~-------~g-~--~~~~~~ 61 (321)
||++|||+|.|++|||+.+.+.| .+|++|++..+||.|-+..|++ +| ++ . ...++-
T Consensus 1 yd~~iiG~GaAAfaAai~A~e~GsGqa~v~mv~~G~~GGTCVNVGCVPSK~llraa~~~~~a~~~~~f~g~~~~~~~v~~ 80 (494)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGSGQAKVAMVERGPLGGTCVNVGCVPSKILLRAAEVAHYARKPPFFVGLLAATVEVDF 80 (494)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCH
T ss_conf 91899827689999999998548871599996378977615852327458999999887676347777775354344238
Q ss_pred H-------HHHHHHH-----HHHHHCC-CCCCCEEEEECCCCCCCCCCCCCC-CCCC-CCCEECCCCCCCCEEEEECCCC
Q ss_conf 8-------9998664-----3232002-322211332011222222222222-2222-1000014776642024652774
Q gi|254780283|r 62 D-------WLMEQMR-----QQAENFG-TKIIQDLVVSVDLDRHPFLVETQS-GDLW-HADAVVIATGSEVKWLRLESEK 126 (321)
Q Consensus 62 ~-------~l~~~~~-----~~~~~~~-v~~~~~~V~~i~~~~~~~~v~~~~-g~~~-~a~~lIiAtG~~~~~~~ipG~~ 126 (321)
+ ++++.+| +-++.|+ ++++.++..-.+ ++...|...+ |+.+ .++++|||||++|..|+|||++
T Consensus 81 ~~ll~~~~~~V~eLR~eKY~~vl~~y~~~~~~~G~A~F~d--~~~V~v~~~~GG~~~~~~k~~lIATGa~P~~P~IPGLk 158 (494)
T TIGR02053 81 EELLEQKREVVEELRKEKYEDVLSSYDGVDLVRGRARFKD--PKTVKVDLAEGGREVVGAKRFLIATGARPAVPPIPGLK 158 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECC--CCEEEEECCCCCCCHHHCCCEEEEECCCCCCCCCCCCC
T ss_conf 9999998899999877678999851798679986799847--87899727888500421386689646778874467800
Q ss_pred CCCEEECCCCCC-CCCCCCCC--CCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCC---CCCCCCCC-CCC
Q ss_conf 332021012111-11111122--1000010255654310121013332223443433221--111---21122355-443
Q gi|254780283|r 127 KFQGFGVSACAT-CDGFFYKN--KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKI---LQEKLFLQ-SNI 197 (321)
Q Consensus 127 ~~~~~~v~~~~~-~d~~~~~~--k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~---~~~~~~~~-~~i 197 (321)
+...++.++... ........ ++++|||||.+|+|+|+.++|+|.+|+|+.|+++|.. +|. .+++++.+ +||
T Consensus 159 e~~~~G~ylTs~~~l~~~~~Pdm~sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~~ll~~~epeis~~V~~~l~~eeGi 238 (494)
T TIGR02053 159 EADKAGRYLTSEEALELDRIPDMESLVVIGGGAIGVELAQAFARLGSEVTILQRSERLLPREEPEISAAVEEALAEEEGI 238 (494)
T ss_pred CHHHCCCEECCHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEHHHHHHHHCCCCCHHHHHHHHHHHCCCCCE
T ss_conf 45336843213777256879970468888652899999999985776140367998644646888999999984147877
Q ss_pred CCCCCC-CEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH----CCCCEECCCCEEEECC
Q ss_conf 322223-11211486433344444333142032100000112222111232235656774----2561806997990088
Q gi|254780283|r 198 DFLFDT-EVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFR----HQLKMTNTNYIWTMPD 272 (321)
Q Consensus 198 ~~~~~~-~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~----~~~~~~~~g~i~~~~~ 272 (321)
+++..+ +++++..-+. ..+.....+.+...++++|.+++|+|++||++-|. -+..++++|.|+ +|+
T Consensus 239 ~~~~~~r~~~~v~~rng--------g~~~~~~e~~~~~~~~eAd~lLVATGR~PN~~gL~GLe~~GVk~~~~G~I~-Vde 309 (494)
T TIGR02053 239 EVVTSARQVKAVSVRNG--------GGKIVTVEKNGGKAEVEADELLVATGRRPNTDGLNGLEKAGVKLDERGGIL-VDE 309 (494)
T ss_pred EEEECCEEEEEEEECCC--------CEEEEEEECCCCCCEEEHHHHHHHHCCCCCCCCCCCHHHCCCEECCCCCEE-ECC
T ss_conf 99804403554445279--------818999855898745743112555278756666774234583466885478-726
Q ss_pred CCCCCCCCEEEECCCCCCCHH----HHHHHHHHHHHHHHHHH
Q ss_conf 855478982897012688445----67899997999999999
Q gi|254780283|r 273 STATSIPGIFAAGDVADERYR----QAITAAAMGCMAALEVE 310 (321)
Q Consensus 273 ~~~Ts~p~Iya~GDv~~~~~~----~~~~A~~~G~~Aa~~i~ 310 (321)
+||||.|+|||+|||+....+ +...|+.+|.+||.|+.
T Consensus 310 ~lrTsnp~iYAAGDVt~~rl~Garfle~vAA~~G~vAA~NA~ 351 (494)
T TIGR02053 310 RLRTSNPGIYAAGDVTGGRLQGARFLEYVAAKEGVVAAENAL 351 (494)
T ss_pred CCCCCCCCEEEEECEECCCCCCCHHHHHHHHHCCCEEEECCC
T ss_conf 203587772462022378746523577787505804520101
No 42
>PTZ00052 thioredoxin reductase; Provisional
Probab=100.00 E-value=0 Score=299.97 Aligned_cols=290 Identities=20% Similarity=0.231 Sum_probs=203.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC---------CCCCCEEEEECCCCC------------------CCCC
Q ss_conf 7675199998977799999999986995999967---------887756875010078------------------7747
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG---------SDLGGQLMITESIEN------------------YPGF 55 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~---------~~~GG~l~~~~~i~n------------------~~g~ 55 (321)
+-+|||+||||||||+.||++++++|.+|+|||+ +.+||.|.+..++.- ..|+
T Consensus 39 ~~dYDvvVIG~GpgG~~AA~~Aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPSK~L~~aa~~~~~~~~~~~~~Gi 118 (541)
T PTZ00052 39 TYDYDYVVIGGGPGGMASAKEAAAHGAKVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGLMGSSFKLDSQMYGW 118 (541)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 87799899997889999999999889909999424556668717795011783628999999999999999756886583
Q ss_pred C---CCCCHHHHHHHHHH-----------HHHHCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCEE
Q ss_conf 7---77897899986643-----------2320023222113320112222222222222--222100001477664202
Q gi|254780283|r 56 A---TSIRGDWLMEQMRQ-----------QAENFGTKIIQDLVVSVDLDRHPFLVETQSG--DLWHADAVVIATGSEVKW 119 (321)
Q Consensus 56 ~---~~~~~~~l~~~~~~-----------~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~a~~lIiAtG~~~~~ 119 (321)
. ..+...+++++.++ .++..+++++.++..-++...-.+.+..+++ ++++++++|||||++|+.
T Consensus 119 ~~~~~~~d~~~l~~~~~~~i~~l~~~~~~~l~~~~V~~i~G~a~f~~~~tV~v~~~~~~g~~~~i~a~~iIIATGS~P~i 198 (541)
T PTZ00052 119 KTSSLSHEWGKLVETVQSHIRSLNFSYRTGLRSSNVKYINGLAKLKDPHTVEYYLKGDNSQEETITSKYILIATGCRPHI 198 (541)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCEEEEEECCCCCCEEEEEEEEEEECCCCCCCC
T ss_conf 27876316999999999999998888998887689689985899836987899842588852799952799857888767
Q ss_pred EE-ECCCCCCC--EEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CCCC---CCCCC
Q ss_conf 46-52774332--021012111111111221000010255654310121013332223443433221-1112---11223
Q gi|254780283|r 120 LR-LESEKKFQ--GFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS-EKIL---QEKLF 192 (321)
Q Consensus 120 ~~-ipG~~~~~--~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~-~~~~---~~~~~ 192 (321)
|+ +||..+.. ...+. .....+++++|||||.+|+|+|..|+++|.+||++.|...|+. ++.. ..+.+
T Consensus 199 P~~ipg~~~~~ltS~~~l------~l~~lP~~lvIIGgG~IG~E~A~if~~lGs~VTi~~r~~~L~~~D~di~~~l~~~l 272 (541)
T PTZ00052 199 PEDVEGAIELSITSDDIF------SLKKSPGKTLVVGASYVALECAGFLNSLGFDVTVAVRSIVLRGFDRQCAEKVKEYM 272 (541)
T ss_pred CCCCCCCCCCCCCCHHHC------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 888776763020653220------65348962899898699999999999759858999537767565777999999999
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEE
Q ss_conf 554433222231121148643334444433314203210000011222211123223565677--4-2561806997990
Q gi|254780283|r 193 LQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWT 269 (321)
Q Consensus 193 ~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~ 269 (321)
++.+|+++.+..+.++....... .+.+. +++ ...+|.|++++|++||++-+ + .+++++++|++++
T Consensus 273 ~~~GV~i~~~~~v~~v~~~~~~~-------~v~~~---dg~--~~~~d~vLvA~GR~Pnt~~LgLe~~Gv~~~~~G~~i~ 340 (541)
T PTZ00052 273 EEQGVKFKVGVLPKKLEKVNDKI-------KVSFS---DGT--VELYDTVLYATGRKGDIKGLNLEALNVEVSKSGNKII 340 (541)
T ss_pred HHCCCEEECCEEEEEEEECCCEE-------EEEEC---CCC--EEEEEEEEEECCCCCCCCCCCCHHCCEEECCCCCEEE
T ss_conf 85074997454899999739826-------99976---894--7881289992265564577784220658878998895
Q ss_pred ECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 08885547898289701268844567899997999999999
Q gi|254780283|r 270 MPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 270 ~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
+|+++|||+|+|||+|||+++...+++.|..+|.+||.++.
T Consensus 341 ~d~~~~Ts~p~IyAiGDV~~G~p~Lah~A~~eg~vaa~~i~ 381 (541)
T PTZ00052 341 PKDLSCTNVPSIFAVGDVAEGVPELAPVAIKAGEILARRLF 381 (541)
T ss_pred EECCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 13366677773999505468964248999999999999984
No 43
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=100.00 E-value=0 Score=298.51 Aligned_cols=295 Identities=23% Similarity=0.296 Sum_probs=221.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 876751999989777999999999869959999678-8775687501007877477778978999866432320023222
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKII 80 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~ 80 (321)
.+..++|+|||||||||.||--|.|.|.+++||||. +.||.|+ ..+|.|+.. .+++.+=++-+...||+|.
T Consensus 140 ~~~g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGLLt-----FGIPsFKLd---K~V~~~Rr~if~~MGi~F~ 211 (480)
T TIGR01318 140 KPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT-----FGIPSFKLD---KAVLSRRREIFTAMGIEFK 211 (480)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCC-----CCCCCHHHH---HHHHHHHHHHHHHCCCEEE
T ss_conf 00782789977886025799987517855999747703076013-----688851102---7899999999975892786
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCE-EEEECCCCCCC-----------EEECCCCC--------CCC
Q ss_conf 11332011222222222222222210000147766420-24652774332-----------02101211--------111
Q gi|254780283|r 81 QDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVK-WLRLESEKKFQ-----------GFGVSACA--------TCD 140 (321)
Q Consensus 81 ~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~-~~~ipG~~~~~-----------~~~v~~~~--------~~d 140 (321)
.+.-++-|. .+++- .-.||+|.|..|++-. .=++|+.+... .|.+.... +.+
T Consensus 212 Ln~EvGrD~-------~l~~L-Le~YDAVFlGvGTY~~~~ggLP~eDa~GV~~ALPFLianTr~lmGl~eyGrPiaGw~~ 283 (480)
T TIGR01318 212 LNTEVGRDI-------SLDDL-LEDYDAVFLGVGTYRSMRGGLPGEDAPGVLKALPFLIANTRQLMGLPEYGRPIAGWEP 283 (480)
T ss_pred CCCEEECCC-------CHHHH-HHHCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCC
T ss_conf 581650325-------55444-3114848961143343128778877421666424776615212378887774467776
Q ss_pred --CC-CCCCCCEEEEECCCCCCCCEEEEECC-CCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf --11-11221000010255654310121013-332223443433221--1112112235544332222311211486433
Q gi|254780283|r 141 --GF-FYKNKDVIVVGGGNTAAEEALHLAKI-ARRVTIVHRRSSLRS--EKILQEKLFLQSNIDFLFDTEVVDVIGSIPE 214 (321)
Q Consensus 141 --~~-~~~~k~v~ViGgG~~g~e~A~~L~~~-~~~Vtli~r~~~l~~--~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~ 214 (321)
++ ...||+|+|+|||++||||..+--|+ +++||.++|||+-+. |.-.+.-+ .++||+|.||.++.+|..+...
T Consensus 284 ~~P~~~~~Gk~VVVLGGGDTaMDCvRTaiR~GA~~VTC~YRRDE~nMPGSrrEV~NA-REEGV~F~FnvQP~~i~~~~~~ 362 (480)
T TIGR01318 284 EEPLIDVEGKRVVVLGGGDTAMDCVRTAIRLGAKKVTCAYRRDEANMPGSRREVANA-REEGVEFLFNVQPLEIELDEDG 362 (480)
T ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHHHHCCC-HHCCCEEEEEECCEEEEECCCC
T ss_conf 677423477668985888752578899998177613126653677878775552661-1117113210031588877888
Q ss_pred ----------CCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCH-HHHHC-CCCEECCCCEEEE---C---CCCCC
Q ss_conf ----------34444433314203210000011222211123223565-67742-5618069979900---8---88554
Q gi|254780283|r 215 ----------PPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNT-KIFRH-QLKMTNTNYIWTM---P---DSTAT 276 (321)
Q Consensus 215 ----------~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~-~~~~~-~~~~~~~g~i~~~---~---~~~~T 276 (321)
...+++..|.+-.....|++..+++|.||+|+||.|.. +||+. ++.+|.+|.|++. + ..+||
T Consensus 363 ~~~Gv~~~~t~~GEPDA~GRRrp~pv~GSE~vl~ADvvI~AFGF~P~~~pWL~~~gi~~ds~GrI~~~lsd~~~~~~~QT 442 (480)
T TIGR01318 363 KVIGVKLVRTKLGEPDAKGRRRPEPVAGSEFVLPADVVIMAFGFSPHAMPWLAEHGITLDSWGRIITALSDEGSDLQYQT 442 (480)
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCCCCCEECCCCEEEEEECCCCCCCCHHHHCCEEECCCCCEEECCCCCCCCCCCCC
T ss_conf 52335652356678677768777104786515146558971067898864445177556346327751345567765335
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78982897012688445678999979999999999997
Q gi|254780283|r 277 SIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 277 s~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
|.|.|||.||+. .+..+++|||++|..||..|-+||.
T Consensus 443 ~~PKiFAGGD~v-RGaDLVVTA~aeGR~AA~gi~~wL~ 479 (480)
T TIGR01318 443 SNPKIFAGGDAV-RGADLVVTAVAEGRKAAQGILDWLG 479 (480)
T ss_pred CCCCEECCCCCE-ECCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 688475167701-4672200066766899999999854
No 44
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=100.00 E-value=0 Score=297.32 Aligned_cols=300 Identities=22% Similarity=0.230 Sum_probs=208.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 75199998977799999999986995999967887756875010078774777789789998664323200232221133
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDLV 84 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~V 84 (321)
-++|+|||+|||||+||-.|.|+||.||||||+++-|.|+ + |.+|-|.. ...|++++=.+++..=|++|+++.-
T Consensus 151 GkkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL-~---YGIPnmKL--dK~e~v~RRi~~l~aEG~~Fvtnte 224 (517)
T TIGR01317 151 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLL-R---YGIPNMKL--DKEEIVDRRIDLLEAEGVDFVTNTE 224 (517)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCC-C---CCCCCCCC--CHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 8668997567579999999853588389974367888630-2---48887433--7388999999998747842017830
Q ss_pred EE-CCCCCCC-----CCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEEECCCCCC-------------C-C---
Q ss_conf 20-1122222-----22222222222100001477664-2024652774332021012111-------------1-1---
Q gi|254780283|r 85 VS-VDLDRHP-----FLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGFGVSACAT-------------C-D--- 140 (321)
Q Consensus 85 ~~-i~~~~~~-----~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~v~~~~~-------------~-d--- 140 (321)
++ -+.+.+. ..|. .+.-.-.||+||+|+||. ||.|+|||.+. ++|||++. . +
T Consensus 225 iGdWdenskitnlsk~di~-~~~L~~~fDAVVLa~Ga~~pRDLpI~GREL---~GiH~AMefL~~~tk~~l~~~~k~~~G 300 (517)
T TIGR01317 225 IGDWDENSKITNLSKKDIS-ADELKEDFDAVVLATGATKPRDLPIPGREL---KGIHFAMEFLTLNTKALLDDDFKDKDG 300 (517)
T ss_pred CCCCCCCCCEECCCCCCCC-HHHHHHHCCEEEEECCCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 0465344420002234268-799871469389833788601035577664---660378655467548560885366678
Q ss_pred --CCCCCCCCEEEEECCCCCCCCEEEEEC-CCCCCCCCCCCCCCCC--------CCC--------CCCCCCCCCCC-CCC
Q ss_conf --111122100001025565431012101-3332223443433221--------111--------21122355443-322
Q gi|254780283|r 141 --GFFYKNKDVIVVGGGNTAAEEALHLAK-IARRVTIVHRRSSLRS--------EKI--------LQEKLFLQSNI-DFL 200 (321)
Q Consensus 141 --~~~~~~k~v~ViGgG~~g~e~A~~L~~-~~~~Vtli~r~~~l~~--------~~~--------~~~~~~~~~~i-~~~ 200 (321)
....+||+|+|||||++|-||..+-.| -++.|+=|+-.|++.. +.+ -.++...+.+- +.-
T Consensus 301 qP~I~akGK~VvvIGGGDTG~DCvGTs~RhGA~sV~qFE~mP~PP~~Ra~~npWP~wP~v~r~~y~hEE~~a~~GrDpRe 380 (517)
T TIGR01317 301 QPFIKAKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEERAKDNPWPEWPKVYRVDYAHEEVKAKYGRDPRE 380 (517)
T ss_pred CCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCEEEECHHHHHHHHCCCCCCHH
T ss_conf 87354228678997578756224563235543552302568887767727864865751133026689898517956012
Q ss_pred CCCCEEECCCCCCCCCCCCCCCCEEEC---------CCCCCCCCCCCCCCCCCCCCCC-CCHH-HHHC-CCCEECCCCEE
Q ss_conf 223112114864333444443331420---------3210000011222211123223-5656-7742-56180699799
Q gi|254780283|r 201 FDTEVVDVIGSIPEPPLFPSVSGVRLH---------NKKEGNFFERNVDGIFIAIGYK-PNTK-IFRH-QLKMTNTNYIW 268 (321)
Q Consensus 201 ~~~~v~~i~g~~~~~~~~~~~~~v~~~---------~~~~g~~~~i~~D~vi~a~G~~-pn~~-~~~~-~~~~~~~g~i~ 268 (321)
|...-+++.|+........+...|+.. ....|+++..++|.|++|+||. |... +|++ .+..+.+|.|.
T Consensus 381 y~i~t~~f~G~d~G~V~a~rTv~V~~~K~~~Gk~~~~e~pGsE~~~~AdLVLLAmGFvGPE~~GlL~~~gV~k~~RG~i~ 460 (517)
T TIGR01317 381 YSIATKEFVGDDEGKVKAVRTVRVEMKKDEDGKYEFVEVPGSEEVFEADLVLLAMGFVGPEQAGLLDDFGVDKDERGNIK 460 (517)
T ss_pred HHCCCEEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCHHHEEEEECCCCCCCCCCCHHHHCCCCCCCCCEE
T ss_conf 31001335676884487888899999877898288886079752011012332026757642003144444437787466
Q ss_pred EECCCCC---CCCCC--EEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0088855---47898--28970126884456789999799999999999974
Q gi|254780283|r 269 TMPDSTA---TSIPG--IFAAGDVADERYRQAITAAAMGCMAALEVEHYLSI 315 (321)
Q Consensus 269 ~~~~~~~---Ts~p~--Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~ 315 (321)
...+..+ ||+|| |||||||. .+++++++|+.||+.||.++++||=.
T Consensus 461 A~~~~~~GylTSipGGkVFAAGD~R-RGQSLiVWAI~EGR~aA~aVD~yLMG 511 (517)
T TIGR01317 461 AGYDDYEGYLTSIPGGKVFAAGDCR-RGQSLIVWAINEGRKAARAVDRYLMG 511 (517)
T ss_pred ECCCCCCCEEEECCCCCEEEEECCC-CCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 3236777658871897268762489-88037788888878999986032068
No 45
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=100.00 E-value=0 Score=300.81 Aligned_cols=265 Identities=30% Similarity=0.347 Sum_probs=197.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-EEE
Q ss_conf 1999989777999999999869959999678877568750100787747777897899986643232002322211-332
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-LVV 85 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~ 85 (321)
||+|||||||||+||.+|+|.|++++|||++. ++.+....++++++++. ....++.....++..+++++++.+ .|+
T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~~--~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 77 (277)
T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKEG--GTCYNRGCIPKKLLLEA-AEVGKLDLRPLEQYKDEGIEVLLGTGVT 77 (277)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--CCEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHCCCEEEECCEEE
T ss_conf 99999976999999999984999799993799--93575577477116454-3314561899999987597999687799
Q ss_pred ECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCC---CCCEEEEECCCCCCCCE
Q ss_conf 011222222222222222210000147766420246527743320210121111111112---21000010255654310
Q gi|254780283|r 86 SVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYK---NKDVIVVGGGNTAAEEA 162 (321)
Q Consensus 86 ~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~---~k~v~ViGgG~~g~e~A 162 (321)
.++.+.+ .|.+.+|++++||+||||||+.|+.|+|||++.+ +++.|..++.+.++ +++|+|+|+|++|+|+|
T Consensus 78 ~i~~~~~--~v~~~~g~~~~~d~lviAtG~~~~~~~ipG~~~~---~~~~~~~~~~~~~~~~~~~~v~VvGgG~~g~e~A 152 (277)
T pfam07992 78 AIDKAGK--KVTLDDGKELTYDKLVIATGARPRRPPIPGVELD---GVFYLTSDDALALREKPKKRVVVVGGGYIGLELA 152 (277)
T ss_pred EEECCCC--EEEECCCCEEECCEEEECCCCCCCCCCCCCCCCC---CCEECCHHHHHHHHHCCCCEEEEECCCHHHHHHH
T ss_conf 9978999--8998789399859999987998622577874445---6232369999875617456699979987599999
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 1210133322234434332211112------1122355443322223112114864333444443331420321000001
Q gi|254780283|r 163 LHLAKIARRVTIVHRRSSLRSEKIL------QEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFE 236 (321)
Q Consensus 163 ~~L~~~~~~Vtli~r~~~l~~~~~~------~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~ 236 (321)
..|++++++|+++++++.+...... .+.+ ...++..+....+..... ...........++..+
T Consensus 153 ~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~ 221 (277)
T pfam07992 153 AALAKLGAEVTVVERRDRLLARADDEIRAALLEKL-EELGGVIVLLAKVEVVVE----------VVEGVVVKVVLEDGIE 221 (277)
T ss_pred HHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHH-HHHCCEEEEEEEEEEEEE----------CCEEEEEECCCCEEEE
T ss_conf 99997299379998657234444789999999999-973989999667889883----------0036898605652799
Q ss_pred CCCCCCCCCCCCCCCHHHHHC-CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCC
Q ss_conf 122221112322356567742-5618069979900888554789828970126884
Q gi|254780283|r 237 RNVDGIFIAIGYKPNTKIFRH-QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADER 291 (321)
Q Consensus 237 i~~D~vi~a~G~~pn~~~~~~-~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~ 291 (321)
+++|.+++++|..|+..++++ +++++++|++.+ |++||||+|+|||+|||+++.
T Consensus 222 ~~~d~~~~~~g~~~~~~~~~~~gl~~~~~G~I~v-d~~~~Ts~~~VyA~GDva~g~ 276 (277)
T pfam07992 222 ADADLVAIGRGPNPNTLLLEKAGLELDERGYIVV-DEYLRTSVPGIYAAGDVAEGR 276 (277)
T ss_pred EEEEEEEEEEEECCCCCHHHHCCCCCCCCCCEEE-CCCCEECCCCEEEEEECCCCC
T ss_conf 7089999997415895137777924889995867-929740999999988688999
No 46
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=100.00 E-value=0 Score=298.25 Aligned_cols=282 Identities=22% Similarity=0.280 Sum_probs=198.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCC---------------C--CCCC---CCCCHHH
Q ss_conf 675199998977799999999986995999967887756875010078---------------7--7477---7789789
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIEN---------------Y--PGFA---TSIRGDW 63 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n---------------~--~g~~---~~~~~~~ 63 (321)
++|||+||||||||..+|.. ..|.+++|+|++.+||.|.+..++.. . .|.. ..+..++
T Consensus 1 k~YDviVIGaGpgG~~~a~~--~ag~kValvEk~~~GGtCln~GCIPsK~ll~~a~~~~~~~~~~~~Gi~~~~~~~~~~~ 78 (452)
T TIGR03452 1 RHYDLIIIGTGSGNSIPDPR--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRWPD 78 (452)
T ss_pred CCCCEEEECCCHHHHHHHHH--HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHH
T ss_conf 94768999986899999999--8299099997899278580235888999999999999997777358325667307999
Q ss_pred HHHHH---------------HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCC
Q ss_conf 99866---------------432320023222113320112222222222222222100001477664202465277433
Q gi|254780283|r 64 LMEQM---------------RQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKF 128 (321)
Q Consensus 64 l~~~~---------------~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~ 128 (321)
++++. ++.....+++++.++..-++ ..+|.+.+|++++++++|||||++|+.|++++.+.
T Consensus 79 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~V~~~~G~a~f~~----~~tv~v~~g~~~~a~~iiIATGs~P~~p~~~~~~~- 153 (452)
T TIGR03452 79 IVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVG----PRTLRTGDGEEITGDQIVIAAGSRPYIPPAIADSG- 153 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECC----CCEEECCCCCEEEECEEEECCCCCCCCCCCCCCCC-
T ss_conf 9999987678999755999985367788699998999937----85798189878984669993799887888767789-
Q ss_pred CEEECCCCCCCCCCC--CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCCCC--CCCCCCCCCCC
Q ss_conf 202101211111111--1221000010255654310121013332223443433221--11121122--35544332222
Q gi|254780283|r 129 QGFGVSACATCDGFF--YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQEKL--FLQSNIDFLFD 202 (321)
Q Consensus 129 ~~~~v~~~~~~d~~~--~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~~~~--~~~~~i~~~~~ 202 (321)
..++...+.+. .-+++++|||||++|+|+|..|+++|++||+++|.+++.. ++...+.+ ..+.+++++++
T Consensus 154 ----~~~~ts~~~l~l~~lP~~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~~lL~~~D~~i~~~l~~~~~~~~~i~~~ 229 (452)
T TIGR03452 154 ----VRYHTNEDIMRLPELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKKWDIRLG 229 (452)
T ss_pred ----CEEECCHHHHCCHHCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEEC
T ss_conf ----8686556554330058669998886899999999996199499999676223334889999999997568299932
Q ss_pred CCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH---HCCCCEECCCCEEEECCCCCCCCC
Q ss_conf 31121148643334444433314203210000011222211123223565677---425618069979900888554789
Q gi|254780283|r 203 TEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF---RHQLKMTNTNYIWTMPDSTATSIP 279 (321)
Q Consensus 203 ~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~---~~~~~~~~~g~i~~~~~~~~Ts~p 279 (321)
..+..+..+.. ++.+.. .++ .++++|.|++++|++||++.+ +.+++++++|+|. +|++||||+|
T Consensus 230 ~~v~~~~~~~~---------~~~v~~-~~g--~~~~~d~vl~a~GR~Pn~~~L~l~~~gv~~~~~g~I~-vd~~~~Ts~~ 296 (452)
T TIGR03452 230 RNVTAVEQDGD---------GVTLTL-DDG--STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIK-VDEYGRTSAR 296 (452)
T ss_pred CEEEEEEECCC---------EEEEEE-CCC--CEEEEEEEEECCCCCCCCCCCCCHHCCCCCCCCCCCC-CCCCCCCCCC
T ss_conf 38999997398---------039994-699--7998228999248766636668012296435798730-2876786897
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8289701268844567899997999999999
Q gi|254780283|r 280 GIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 280 ~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
+|||+|||++.+ .+++.|..||.+|+.++.
T Consensus 297 ~IyA~GDv~g~~-~Lah~A~~eg~~a~~ni~ 326 (452)
T TIGR03452 297 GVWALGDVSSPY-QLKHVANAEARVVKHNLL 326 (452)
T ss_pred EEEEEECCCCCC-CCHHHHHHHHHHHHHHHC
T ss_conf 399974068875-770089999999999970
No 47
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=100.00 E-value=0 Score=296.60 Aligned_cols=284 Identities=21% Similarity=0.257 Sum_probs=199.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCC---------------C--CCCC---CCCCHHHH
Q ss_conf 75199998977799999999986995999967887756875010078---------------7--7477---77897899
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIEN---------------Y--PGFA---TSIRGDWL 64 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n---------------~--~g~~---~~~~~~~l 64 (321)
+|||+|||+||||..+|.. ..|++|+|+|++.+||.|.+..++.- . .|.. ..+...++
T Consensus 1 ~YDviVIG~Gpgg~~~a~~--~aG~kValVE~~~~GGtCln~GCiPsK~ll~~a~~~~~~~~~~~~gi~~~~~~~~~~~~ 78 (453)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGTFGGTCLNVGCIPTKMFVYAADVAQTIREASRLGVDAHIDRVRWPDI 78 (453)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCHHHH
T ss_conf 9778998988899999999--82992999978997781716166889999999999999976562682067784199999
Q ss_pred HHHHHHH------------HHHCCCCCCCEEEEECCCCCCCCCC-CCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEE
Q ss_conf 9866432------------3200232221133201122222222-22222222100001477664202465277433202
Q gi|254780283|r 65 MEQMRQQ------------AENFGTKIIQDLVVSVDLDRHPFLV-ETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGF 131 (321)
Q Consensus 65 ~~~~~~~------------~~~~~v~~~~~~V~~i~~~~~~~~v-~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~ 131 (321)
.++..+. ....+++++.++..-++. +...| .+.++++++++++|||||++|+.|++||.+...
T Consensus 79 ~~~~~~~i~~l~~~~~~~~~~~~gv~~i~G~a~f~~~--~~v~v~~~~~~~~i~a~~iiIATGS~P~~p~~~g~~~~~-- 154 (453)
T PRK07846 79 VSRVFGRIDPIAAGGEEYRRGTPNIDVYRGHARFVDA--DGLYTLRTGDGEEITADQIVIAAGSRPVIPPAIADSGVR-- 154 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCC--CEEEECCCCCCEEEEECEEEEECCCCCCCCCCCCCCCCE--
T ss_conf 9999999999987569997158991899848999159--867861379846998164999028877789986657877--
Q ss_pred ECCCCCCCCCCC--CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCCCCCC--CCCCCCCCCCCCCE
Q ss_conf 101211111111--1221000010255654310121013332223443433221--11121122--35544332222311
Q gi|254780283|r 132 GVSACATCDGFF--YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKILQEKL--FLQSNIDFLFDTEV 205 (321)
Q Consensus 132 ~v~~~~~~d~~~--~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~~~~~--~~~~~i~~~~~~~v 205 (321)
++...+.+. ..+++++|||||++|+|+|..|+++|.+||+++|.+++.. ++...+.+ ..+.++++++++.+
T Consensus 155 ---~~ts~~~l~l~~lP~~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~ll~~~D~~~~~~l~~~~~~~i~i~~~~~v 231 (453)
T PRK07846 155 ---YHTSDTIMRLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSDRLLRHCDDTISERFTEIAGKKWDLRLGRNV 231 (453)
T ss_pred ---EEECCCHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCEEEEECCEE
T ss_conf ---98664300154388649998997579999999995299268997465324434789999999998648599957689
Q ss_pred EECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECCCCEEEECCCCCCCCCCEE
Q ss_conf 21148643334444433314203210000011222211123223565677--4-25618069979900888554789828
Q gi|254780283|r 206 VDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNTNYIWTMPDSTATSIPGIF 282 (321)
Q Consensus 206 ~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~g~i~~~~~~~~Ts~p~Iy 282 (321)
+++..+.. ++.+.. .++ .++++|.|++++|++||++.+ + .+++++++|++. +|++||||+|+||
T Consensus 232 ~~~~~~~~---------~~~v~~-~~g--~~i~~d~vl~a~GR~Pn~~~l~l~~~gi~~~~~G~I~-vd~~~~Ts~~~Iy 298 (453)
T PRK07846 232 VGVSQDGS---------GVTLRL-DDG--STVDADVLLVATGRVSNGDLLDAEAAGVDVHEDGRVK-VDEYQRTSARGVF 298 (453)
T ss_pred EEEEEECC---------EEEEEE-CCC--CEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEE-ECCCCCCCCCEEE
T ss_conf 99997098---------359994-799--6998549999777566635558331477445468543-2674464787299
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97012688445678999979999999999
Q gi|254780283|r 283 AAGDVADERYRQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 283 a~GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 311 (321)
|+|||++.+ .+++.|..||.+|+.++..
T Consensus 299 A~GDv~g~~-~lah~A~~qg~ia~~~i~~ 326 (453)
T PRK07846 299 ALGDVSSPY-QLKHVANHEARVVKHNLLH 326 (453)
T ss_pred EEEECCCCC-CCHHHHHHHHHHHHHHHHC
T ss_conf 987468876-7622899999999999725
No 48
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=100.00 E-value=0 Score=295.54 Aligned_cols=282 Identities=20% Similarity=0.240 Sum_probs=197.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCC--CCEEEEECCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCCC
Q ss_conf 7519999897779999999998699--5999967887--7568750100787747777897899986-643232002322
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAML--KPVIIAGSDL--GGQLMITESIENYPGFATSIRGDWLMEQ-MRQQAENFGTKI 79 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~--~v~iie~~~~--GG~l~~~~~i~n~~g~~~~~~~~~l~~~-~~~~~~~~~v~~ 79 (321)
+++|+|||+|+||++||..|++.+. +++|++++.. -.+...++. |.. ... ++.... -.+..++.++++
T Consensus 3 ~~~iVIIG~G~AG~~aA~~lR~~g~~g~Itli~~E~~~PY~Rp~Lsk~---~l~--~~~--~~~~~l~~~~~y~~~~I~l 75 (400)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKS---MLL--EDS--PQLQQVLPANWWQENNVHL 75 (400)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHCCHH---HHC--CCC--HHHHHCCCHHHHHHCCCEE
T ss_conf 672999977599999999998069499799998999998865107399---876--997--2443248987998789699
Q ss_pred CCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCC---CCEEECCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 211-332011222222222222222210000147766420246527743---3202101211111111122100001025
Q gi|254780283|r 80 IQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKK---FQGFGVSACATCDGFFYKNKDVIVVGGG 155 (321)
Q Consensus 80 ~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~---~~~~~v~~~~~~d~~~~~~k~v~ViGgG 155 (321)
+.+ +|+.++.+.+ +|.+++|+++.||+||||||+.|+.||+||... |..+++..+..+......+|+|+|||+|
T Consensus 76 ~~g~~v~~id~~~~--~V~l~~g~~~~YD~LviATGa~p~~lp~~~~~~~~V~~lrt~~Da~~l~~~l~~~k~vvVIGgG 153 (400)
T PRK09754 76 HSGVTIKTLGRDTR--ELVLTNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAG 153 (400)
T ss_pred ECCCEEEEECCCCC--EEEECCCCEEECCEEEECCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 88988999718898--8998799888726058877888756899888889989977999999999876158739998855
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCC---CCCC---CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf 5654310121013332223443433221---1112---112235544332222311211486433344444333142032
Q gi|254780283|r 156 NTAAEEALHLAKIARRVTIVHRRSSLRS---EKIL---QEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNK 229 (321)
Q Consensus 156 ~~g~e~A~~L~~~~~~Vtli~r~~~l~~---~~~~---~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~ 229 (321)
.+|+|+|..|++.|.+||++++.+.+.. ++.. ..+.+++.+|++++++.+.++..... + .+.+.
T Consensus 154 ~IGlE~A~~l~~~G~~Vtvve~~~~~l~r~~~~~~~~~l~~~~~~~GV~~~~~~~v~~~~~g~~-------~-~v~l~-- 223 (400)
T PRK09754 154 TIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEK-------V-ELTLQ-- 223 (400)
T ss_pred HHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCCE-------E-EEEEC--
T ss_conf 8999999999975994899953463410026989999999999978989995875899978977-------9-99986--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCH--------HHHHHHHHH
Q ss_conf 100000112222111232235656774256180699799008885547898289701268844--------567899997
Q gi|254780283|r 230 KEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERY--------RQAITAAAM 301 (321)
Q Consensus 230 ~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~--------~~~~~A~~~ 301 (321)
+| .+++||.|++++|.+||++|++... ++.+|.| ++|++||||.|+|||+|||+..+. ..+..|..+
T Consensus 224 -~G--~~l~aD~VivaiGv~Pnt~la~~ag-L~~~~GI-~VD~~~~Ts~p~IyAaGDvA~~~~~~g~~~r~e~w~~A~~q 298 (400)
T PRK09754 224 -SG--ETLQADVVIYGIGISANDQLAREAN-LDTANGI-VIDEACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQ 298 (400)
T ss_pred -CC--CEEECCEEEECCCCCCCHHHHHHCC-CCCCCEE-EECCCCCCCCCCEEEEECCCCCCCCCCCEEEEHHHHHHHHH
T ss_conf -89--9998589998976753758998779-9759939-99978764898999995520354888888772365788899
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780283|r 302 GCMAALEVE 310 (321)
Q Consensus 302 G~~Aa~~i~ 310 (321)
|.+||.|+.
T Consensus 299 g~~aa~nm~ 307 (400)
T PRK09754 299 AQIAAAAML 307 (400)
T ss_pred HHHHHHHHC
T ss_conf 999999842
No 49
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=100.00 E-value=0 Score=290.36 Aligned_cols=292 Identities=24% Similarity=0.345 Sum_probs=212.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCC------------------CCCCCCC----C--
Q ss_conf 675199998977799999999986995999967887756875010078------------------7747777----8--
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIEN------------------YPGFATS----I-- 59 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n------------------~~g~~~~----~-- 59 (321)
++||+++||||.+|++.|.+++..|.+++|||.+++||.|-+..|++- =.||+.. .
T Consensus 1 ~~YDylvIGGGSGGiAsa~RAa~~GA~~llvE~~~LGGTCVNVGCVPKKvMW~aa~~~e~~~~~~~~YGf~~~lPld~~~ 80 (475)
T TIGR01421 1 KEYDYLVIGGGSGGIASARRAAEHGAKALLVEEKKLGGTCVNVGCVPKKVMWYAASLAETMHRDAADYGFKSELPLDKEN 80 (475)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCEEEEEEHHCCCCEEEEECEECCHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 97546998368615788898885076078762000488068501137623200567778875221027854336410036
Q ss_pred ---CH-------HHHHHHH----HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCC--CCCCCCCEECCCCCCCCEEE---
Q ss_conf ---97-------8999866----43232002322211332011222222222222--22221000014776642024---
Q gi|254780283|r 60 ---RG-------DWLMEQM----RQQAENFGTKIIQDLVVSVDLDRHPFLVETQS--GDLWHADAVVIATGSEVKWL--- 120 (321)
Q Consensus 60 ---~~-------~~l~~~~----~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~--g~~~~a~~lIiAtG~~~~~~--- 120 (321)
+. +.+++++ ++.+++.+++++.++..-.+.......|...+ .+.|+|++++||||++|..|
T Consensus 81 l~F~f~~l~~~RdaYv~rl~~~Y~~~L~~~~vd~i~G~A~F~~~~kPtveV~g~~nttevy~A~HIliATGG~p~~phe~ 160 (475)
T TIGR01421 81 LKFNFKELKEKRDAYVDRLNGIYQKNLEKNKVDVIEGHAEFTKDQKPTVEVNGKENTTEVYTAPHILIATGGKPSIPHEE 160 (475)
T ss_pred CEECHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEEECCCCCCCEEECCCCCCEEEEECCEEEEECCCCCCCCCCC
T ss_conf 60077999876678999988875248650554389867887488896347736424302576270589448724787546
Q ss_pred EECCCCCCCEEECCCCCCCCCCC---CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCC-CCC-CCCCCCCC---C
Q ss_conf 65277433202101211111111---1221000010255654310121013332223443433-221-11121122---3
Q gi|254780283|r 121 RLESEKKFQGFGVSACATCDGFF---YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS-LRS-EKILQEKL---F 192 (321)
Q Consensus 121 ~ipG~~~~~~~~v~~~~~~d~~~---~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~-l~~-~~~~~~~~---~ 192 (321)
+|||.+. . ...|+++ ..+++|+|||+|++|+|+|..|+-||.+++|+.|+++ ||. |..+++.+ +
T Consensus 161 ~IPG~el-G-------~~SdGfF~LEElP~~~v~vGAGYIAvELAGvLh~LG~~T~L~~R~d~vLR~FD~~i~~~~~~~~ 232 (475)
T TIGR01421 161 NIPGAEL-G-------LDSDGFFALEELPKRVVIVGAGYIAVELAGVLHGLGSKTHLVIRHDRVLRSFDSMISEKVVEEY 232 (475)
T ss_pred CCCCCCC-C-------CCCCCEEHHHCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 7784010-5-------7700200220178717999073898888888731264022577367366740146642668999
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCC----CCCCCCCCCCCCCCCCCCCHHHHH---CCCCEECCC
Q ss_conf 5544332222311211486433344444333142032100----000112222111232235656774---256180699
Q gi|254780283|r 193 LQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEG----NFFERNVDGIFIAIGYKPNTKIFR---HQLKMTNTN 265 (321)
Q Consensus 193 ~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g----~~~~i~~D~vi~a~G~~pn~~~~~---~~~~~~~~g 265 (321)
++.|++++..+.+.+++......... +.+.+. +| -....++|.|||++|++||++-+. -++.++++|
T Consensus 233 ~~~G~~vh~~~~~~kveKt~~~d~~~-----i~~~~~-PGrlPvm~~~~~~d~liwa~GR~Pn~~~L~le~~gv~ld~kg 306 (475)
T TIGR01421 233 EKEGLEVHKLSKPVKVEKTVEGDKLV-----IHFEDG-PGRLPVMKEIDDVDELIWAIGRKPNTKGLGLEKVGVKLDEKG 306 (475)
T ss_pred HHCCCCCCCCCEEEEEEECCCCCEEE-----EEEECC-CCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCEEECCCC
T ss_conf 96796021566047998415786479-----999668-886531023430567874058856735544213212566887
Q ss_pred CEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7990088855478982897012688445678999979999999999
Q gi|254780283|r 266 YIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 266 ~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 311 (321)
+|+ +|++|-|+++||||+|||++.- .+.+.|+..|+.=+...++
T Consensus 307 ~i~-vDeyQNT~v~gIYAlGDV~Gk~-~LTPVAIaAGR~LS~RLF~ 350 (475)
T TIGR01421 307 YII-VDEYQNTNVEGIYALGDVVGKV-ELTPVAIAAGRKLSERLFN 350 (475)
T ss_pred CEE-EECCCCCCCCCEEEECCEEECC-CCCHHHHHHHHHHHHHCCC
T ss_conf 388-7441067318858722268110-0773787730367876368
No 50
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=100.00 E-value=0 Score=288.64 Aligned_cols=283 Identities=19% Similarity=0.263 Sum_probs=195.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCC--CCEEEEECCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCCCCC
Q ss_conf 519999897779999999998699--5999967887--7568750100787747777897899986-6432320023222
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAML--KPVIIAGSDL--GGQLMITESIENYPGFATSIRGDWLMEQ-MRQQAENFGTKII 80 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~--~v~iie~~~~--GG~l~~~~~i~n~~g~~~~~~~~~l~~~-~~~~~~~~~v~~~ 80 (321)
++|+|||||+||++||.+++|.+. +++|+|++.. ..+|..+. |.+... .+..++... -.+..++.++++.
T Consensus 2 ~kiVIIG~g~AG~~aA~~lrk~~~~~eItvi~~e~~~~y~~~~lp~----~~~~~~-~~~~~~~~~~~~~~~~~~~I~v~ 76 (438)
T PRK13512 2 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPY----VIGEVV-EDRKYALAYTPEKFYDRKQITVK 76 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCHHHH----HHCCCC-CCHHHHHCCCHHHHHHHCCCEEE
T ss_conf 8099989849999999999943919999999689988876236679----877886-65243220698999987797999
Q ss_pred CE-EEEECCCCCCCCCCCCC-CCC--CCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCC--CCCCEEEEEC
Q ss_conf 11-33201122222222222-222--221000014776642024652774332021012111111111--2210000102
Q gi|254780283|r 81 QD-LVVSVDLDRHPFLVETQ-SGD--LWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFY--KNKDVIVVGG 154 (321)
Q Consensus 81 ~~-~V~~i~~~~~~~~v~~~-~g~--~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~--~~k~v~ViGg 154 (321)
.+ +|++|+.+.+...+... .++ ++.||+||||||+.|+.|+++....|.-+++........+.. +.|+++||||
T Consensus 77 ~~~~v~~Id~~~k~v~~~~~~~~~~~e~~YDkLviATGs~p~~~g~~~~~v~~lr~~~Da~~i~~~~~~~~~k~vvIIGg 156 (438)
T PRK13512 77 TYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGA 156 (438)
T ss_pred ECCEEEEECCCCCEEEEECCCCCCEEECCCCEEEEECCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 27689998066678999506667423213458999679888766878998799799999999999886179977999895
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCC---CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf 55654310121013332223443433221--1112---112235544332222311211486433344444333142032
Q gi|254780283|r 155 GNTAAEEALHLAKIARRVTIVHRRSSLRS--EKIL---QEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNK 229 (321)
Q Consensus 155 G~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~---~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~ 229 (321)
|.+|+|+|..|+++|++||++++.+++.. ++.+ ..+.+++.+|+++++..+.++.++. +.+.
T Consensus 157 G~IGlE~A~~l~~~G~~Vtlie~~~~~~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~-----------v~~~-- 223 (438)
T PRK13512 157 GYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNE-----------ITFK-- 223 (438)
T ss_pred CHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCE-----------EEEE--
T ss_conf 589999999999729908999935731200499999999999986899999587799997979-----------9993--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCC---------HHHHHHHH
Q ss_conf 1000001122221112322356567742-5618069979900888554789828970126884---------45678999
Q gi|254780283|r 230 KEGNFFERNVDGIFIAIGYKPNTKIFRH-QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADER---------YRQAITAA 299 (321)
Q Consensus 230 ~~g~~~~i~~D~vi~a~G~~pn~~~~~~-~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~---------~~~~~~A~ 299 (321)
+| ..+++|.|++++|.+||+++++. +++++++|.|+ +|++||||+|+|||+|||+... ..+++.|.
T Consensus 224 -~g--~~~~~D~vi~a~G~~Pn~~~~~~~gi~~~~~G~I~-Vd~~~~Ts~~~IyA~GD~a~~~~~~t~~~~~~pla~~A~ 299 (438)
T PRK13512 224 -SG--KVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIP-VNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAH 299 (438)
T ss_pred -EC--CEEEECEEEEEEECCCCHHHHHHCCCCCCCCCCEE-ECCCEECCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHH
T ss_conf -28--89740789996710027367885387657887298-788221489999999425673013478753123517889
Q ss_pred HHHHHHHHHHH
Q ss_conf 97999999999
Q gi|254780283|r 300 AMGCMAALEVE 310 (321)
Q Consensus 300 ~~G~~Aa~~i~ 310 (321)
-+|.+||.++.
T Consensus 300 ~~g~iaa~nl~ 310 (438)
T PRK13512 300 RAASIVAEQIA 310 (438)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999854
No 51
>PRK04965 nitric oxide reductase; Provisional
Probab=100.00 E-value=0 Score=287.87 Aligned_cols=286 Identities=22% Similarity=0.293 Sum_probs=199.7
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH-HHHHHHHCCC
Q ss_conf 98767519999897779999999998699--59999678877568750100787747777897899986-6432320023
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAML--KPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQ-MRQQAENFGT 77 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~--~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~-~~~~~~~~~v 77 (321)
|+.+ |+|||+|+||++||.++++.+. +++||+++.. ..|....+..+ +....+.+++... ..+..+++++
T Consensus 1 M~~~---IVIIG~G~AG~~aa~~lR~~d~~~~Itvi~~e~~--~~Y~rp~Ls~~--~~~~~~~~~l~~~~~~~~~~~~~I 73 (378)
T PRK04965 1 MSNG---IVIIGSGFAARQLVKNIRKQDAHIPITLITADSG--DEYNKPDLSHV--FSQGQRADDLTRQSAGEFAEQFNL 73 (378)
T ss_pred CCCC---EEEECCCHHHHHHHHHHHCCCCCCCEEEEECCCC--CCCCCCCCHHH--HCCCCCHHHHHCCCHHHHHHHCCE
T ss_conf 9899---9999882999999999971194986999989999--88767816698--828999689531798999874897
Q ss_pred CCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCC-CCEEECCCCCCCCCCCCCCCCEEEEECC
Q ss_conf 22211-332011222222222222222210000147766420246527743-3202101211111111122100001025
Q gi|254780283|r 78 KIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKK-FQGFGVSACATCDGFFYKNKDVIVVGGG 155 (321)
Q Consensus 78 ~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~-~~~~~v~~~~~~d~~~~~~k~v~ViGgG 155 (321)
+++.+ +|++||.+.+ +|. .+|+++.||+||||||+.|+.|++||.+. +..+++..+..+.......|+|+|||||
T Consensus 74 ~l~~~~~V~~ID~~~k--~V~-~~g~~~~YDkLVLATGa~p~~ppi~G~~~v~tlr~l~d~~~~~~~l~~~krvvVIGgG 150 (378)
T PRK04965 74 RLFPHTWVTDIDAEAQ--VVK-SQGNQWQYDKLVLATGASAFVPPVPGRELMLTLNSQQEYRACETQLRDAQRVLVVGGG 150 (378)
T ss_pred EEECCCEEEEECCCCC--EEE-ECCCEEECCEEEEECCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 9986989999846463--799-5891984687999358875578999964799819999999999775149789998983
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCC---CCC---CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf 5654310121013332223443433221---111---2112235544332222311211486433344444333142032
Q gi|254780283|r 156 NTAAEEALHLAKIARRVTIVHRRSSLRS---EKI---LQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNK 229 (321)
Q Consensus 156 ~~g~e~A~~L~~~~~~Vtli~r~~~l~~---~~~---~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~ 229 (321)
.+|+|+|..|++.|++||++++.+.+.. ++. ..++.+++.+|++++++.++++.++... ..+.+.+
T Consensus 151 ~IG~E~A~~L~~~G~~Vtvve~~~~ll~~~l~~~~~~~l~~~l~~~GV~~~~~~~v~~i~~~~~~-------~~v~l~d- 222 (378)
T PRK04965 151 LIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTESG-------IRATLDD- 222 (378)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCEEEEEEECCCE-------EEEEECC-
T ss_conf 88999999999679889997666744221178999999999999789099969889999965998-------9999859-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCH---HHHHHHHHHHHHHH
Q ss_conf 100000112222111232235656774256180699799008885547898289701268844---56789999799999
Q gi|254780283|r 230 KEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERY---RQAITAAAMGCMAA 306 (321)
Q Consensus 230 ~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~---~~~~~A~~~G~~Aa 306 (321)
| .++++|.|++++|.+||++|+++.+...++| +++|++||||.|+|||+|||+.... ..+.-++.++..+|
T Consensus 223 --G--~~i~aD~Vv~a~Gv~Pnt~la~~aGl~~~~G--I~Vd~~l~TS~p~IyA~GDcAe~~g~~~~~v~p~~~~a~~lA 296 (378)
T PRK04965 223 --G--RSIEVDAVIAAAGLRPNTALARRAGLAVNRG--ICVDSYLQTSAPDIYALGDCAEINGQVLPFLQPIQLSANALA 296 (378)
T ss_pred --C--CEEECCEEEECCCCCCCHHHHHHCCCCCCCC--EEECCCCCCCCCCEEEEEEEEEECCEEEEHHHHHHHHHHHHH
T ss_conf --9--7998499998947754827898669866998--899999854999999987528989997502899999999999
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780283|r 307 LEVE 310 (321)
Q Consensus 307 ~~i~ 310 (321)
.++.
T Consensus 297 ~~l~ 300 (378)
T PRK04965 297 KNLL 300 (378)
T ss_pred HHHC
T ss_conf 9707
No 52
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-44 Score=279.34 Aligned_cols=299 Identities=21% Similarity=0.240 Sum_probs=193.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEE--CCCCCCEEEEECCCCC---------------C-----CCC-----
Q ss_conf 767519999897779999999998699599996--7887756875010078---------------7-----747-----
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIA--GSDLGGQLMITESIEN---------------Y-----PGF----- 55 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie--~~~~GG~l~~~~~i~n---------------~-----~g~----- 55 (321)
-.+||++||||||+|+.||+.+++.|+++.||| ++.+||.|.+..+|+- . .|.
T Consensus 121 ~~eYDlvIIG~G~GGy~AAi~Aaq~GLKvaiiegekd~lGGTClNrGCIPSKALL~as~~~re~~~~~~l~~~GI~~~~~ 200 (673)
T PTZ00153 121 AEEYDLAIIGCGVGGHAAAINAMERGLKVIIFAGDEDCIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIHSDAF 200 (673)
T ss_pred HHHCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 43579899998762899999999849869999368787477242777321199998735799886145565337511323
Q ss_pred --CC---------------CCCHHHHH-------HHHHH----HHHHCC-------CCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf --77---------------78978999-------86643----232002-------322211332011222222222222
Q gi|254780283|r 56 --AT---------------SIRGDWLM-------EQMRQ----QAENFG-------TKIIQDLVVSVDLDRHPFLVETQS 100 (321)
Q Consensus 56 --~~---------------~~~~~~l~-------~~~~~----~~~~~~-------v~~~~~~V~~i~~~~~~~~v~~~~ 100 (321)
.. ..+-..+. ++++. .+++.+ ++++.++-.-+ ..+.+.+. .+
T Consensus 201 g~~~~~~~~e~~~l~~~~v~~d~~ki~~~k~~vV~~l~~Gv~~llKk~k~~~~~~~V~vi~g~G~i~--~~~~v~~~-~~ 277 (673)
T PTZ00153 201 GKNGKNDEIENNQLLADSFHIDIAKLKEYTQRVIDKLKGGIEHGFKNKKFCKNSEHVQVIYEHGHII--DKNIIKGE-KS 277 (673)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCEEEEECEEEEC--CCCEEEEC-CC
T ss_conf 4333222111122235421156999999999999987501776754067666666359993303771--46347743-78
Q ss_pred CCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 22221000014776642024652774332021012111111111221000010255654310121013332223443433
Q gi|254780283|r 101 GDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180 (321)
Q Consensus 101 g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~ 180 (321)
++.++++.+||||||.|+.||....+. +.+...-.......-+++++|||+|.+|+|+|..++++|.+||+|+..|+
T Consensus 278 ~~~~~aKnIIIATGS~P~~ppgi~iD~---k~V~TSd~AL~Le~lPk~m~IIGgGvIGlEFAsvy~aLGseVTvIE~~~~ 354 (673)
T PTZ00153 278 GKEFKVKNIIIATGSTPNIPDNIEIDD---KSVFTSDEAVKLEGLKNYMGIIGMGIIGIEFADIYTALGSEIIFFDYSPE 354 (673)
T ss_pred CCEEECCEEEECCCCCCCCCCCCCCCC---CEEECHHHHCCHHHCCCEEEEECCCEEHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 855502307990188778899878687---66863033127000786589987764013199999976986999953665
Q ss_pred CCC--CCCC---CCCC-CCCCCCCCCCCCCEEECCCCCCCCCCC----CCCCCE-EECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 221--1112---1122-355443322223112114864333444----443331-4203210000011222211123223
Q gi|254780283|r 181 LRS--EKIL---QEKL-FLQSNIDFLFDTEVVDVIGSIPEPPLF----PSVSGV-RLHNKKEGNFFERNVDGIFIAIGYK 249 (321)
Q Consensus 181 l~~--~~~~---~~~~-~~~~~i~~~~~~~v~~i~g~~~~~~~~----~~~~~v-~~~~~~~g~~~~i~~D~vi~a~G~~ 249 (321)
+.+ ++.. .++. .++.+|++++++.++.+.......... ....+- .......++..++++|.|++|+|++
T Consensus 355 ILP~~D~DIsk~ler~flK~rGI~i~~gt~V~~v~~~~~g~~V~i~~~~~~~~e~~~~~~~~~~~k~leaD~vLVAvGR~ 434 (673)
T PTZ00153 355 LLPIIDADVAKYFERVFIKNKPMNVHLNTEIEYIKAGGGGNPVIIGHRERSEGEDDNEGKAANDIKELHVDSCLVATGRK 434 (673)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCEEEECCCCC
T ss_conf 68988999999999998640494899621799998638985799962233444443322235665168718999852650
Q ss_pred CCHHHH--HC-CCCEECCCCEEEECCCCCCCCCC------EEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 565677--42-56180699799008885547898------289701268844567899997999999999
Q gi|254780283|r 250 PNTKIF--RH-QLKMTNTNYIWTMPDSTATSIPG------IFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 250 pn~~~~--~~-~~~~~~~g~i~~~~~~~~Ts~p~------Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
||++-+ +. ++++ ++|+|. +|++||||+|+ |||+|||++.+ .+++.|..||..|+.+|.
T Consensus 435 PnT~~LGLE~~GI~~-~rG~I~-VDe~~rTnv~g~~~v~hIYAIGDV~G~~-mLAHvAs~EGi~ave~I~ 501 (673)
T PTZ00153 435 PNTNNLGLEKLKIQM-KRGYVQ-VDDHLQVKMEDNEIYDHIFCIGDANGKQ-MLAHTASHQALKVIDFIE 501 (673)
T ss_pred CCCCCCCCHHHCEEE-CCCEEE-ECCCEEECCCCCCCCCCEEEEEECCCCC-HHHHHHHHHHHHHHHHHC
T ss_conf 277888836418253-379799-7996375688886677879998568852-568799986799999872
No 53
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=100.00 E-value=1.4e-42 Score=267.18 Aligned_cols=271 Identities=22% Similarity=0.314 Sum_probs=190.6
Q ss_pred HHHHHHHHCCC--CEEEEECCCCCCEEEEECCCCCCCCCCCCCCH-HHHHHHH-HHHHHHCCCCCCCE-EEEECCCCCCC
Q ss_conf 99999998699--59999678877568750100787747777897-8999866-43232002322211-33201122222
Q gi|254780283|r 19 TAAIYAARAML--KPVIIAGSDLGGQLMITESIENYPGFATSIRG-DWLMEQM-RQQAENFGTKIIQD-LVVSVDLDRHP 93 (321)
Q Consensus 19 ~aA~~l~r~g~--~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~-~~l~~~~-~~~~~~~~v~~~~~-~V~~i~~~~~~ 93 (321)
|||.+++|... +++++|++..- .|....+.-|.+. .++. +.+..+- .+..++++++++.+ +|++||.+.+.
T Consensus 1 saA~~~rrl~p~~eI~vi~~~~~~--~y~~c~lp~~l~g--~i~~~~~l~~~~~e~~~~~~~I~v~~~~~V~~ID~~~k~ 76 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDV--SFANCGLPYVIGG--VIDDRNKLLAYTPEKFIEKRGIDVKTNHEVIKVNDERQT 76 (427)
T ss_pred CHHHHHHHHCCCCCEEEEECCCCC--CCHHHHHHHHHCC--CCCCHHHCCCCCHHHHHHHCCCEEECCCEEEEEECCCCE
T ss_conf 977988843989978999679986--4356455697777--227878721679899998789499918979999899999
Q ss_pred CCCCCC-CCC--CCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCC------CCC--CCCCCEEEEECCCCCCCCE
Q ss_conf 222222-222--22100001477664202465277433202101211111------111--1221000010255654310
Q gi|254780283|r 94 FLVETQ-SGD--LWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCD------GFF--YKNKDVIVVGGGNTAAEEA 162 (321)
Q Consensus 94 ~~v~~~-~g~--~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d------~~~--~~~k~v~ViGgG~~g~e~A 162 (321)
..+... .++ ++.||+||||||+.|+.|++||.+.- +++.+.+.+ .+. .+.|+++|||||.+|+|+|
T Consensus 77 V~~~~~~~~~~~~~~YDkLiiATGs~p~~p~i~g~~~~---~V~~lr~~~Da~~i~~~l~~~~~k~vvViGgG~IGlE~A 153 (427)
T TIGR03385 77 VVVKNNKTNETYEESYDYLILSPGASPIIPNIEGINLD---ITFTLRNLEDTDAIKQYIDANKVDRVVIIGGGYIGLEMV 153 (427)
T ss_pred EEEEECCCCCEEECCCCEEEECCCCCCCCCCCCCCCCC---CEEEECCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHH
T ss_conf 99966798966445789999976998567999986789---889979999999999987507998899999639999999
Q ss_pred EEEECCCCCCCCCCCCCCCCC---CCCC---CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCC
Q ss_conf 121013332223443433221---1112---1122355443322223112114864333444443331420321000001
Q gi|254780283|r 163 LHLAKIARRVTIVHRRSSLRS---EKIL---QEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFE 236 (321)
Q Consensus 163 ~~L~~~~~~Vtli~r~~~l~~---~~~~---~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~ 236 (321)
..|+++|.+||++++.+++.. ++.. .++.+++.+|++++++.++++.++... +.+. +| .+
T Consensus 154 ~~l~~~G~~Vtvve~~~~il~~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~~---------~~l~---~g--~~ 219 (427)
T TIGR03385 154 EALRERGKNVTLIHRSDKILNKLFDEEMNQIVEEELEKHEIELRLNEEVDSIIGEERV---------GVIT---SG--GV 219 (427)
T ss_pred HHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCEEEEEECCCCE---------EEEE---CC--CE
T ss_conf 9999769989999846833655489999999999999759799979889999878878---------9994---69--99
Q ss_pred CCCCCCCCCCCCCCCHHHHHC-CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCH---------HHHHHHHHHHHHHH
Q ss_conf 122221112322356567742-56180699799008885547898289701268844---------56789999799999
Q gi|254780283|r 237 RNVDGIFIAIGYKPNTKIFRH-QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERY---------RQAITAAAMGCMAA 306 (321)
Q Consensus 237 i~~D~vi~a~G~~pn~~~~~~-~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~---------~~~~~A~~~G~~Aa 306 (321)
+++|.|++++|.+||+++++. +++++++|+|+ +|++||||+|+|||+|||+.... .+++.|..+|.+||
T Consensus 220 i~~D~vi~a~G~~Pn~~~~~~~gl~~~~~G~I~-Vd~~~~Ts~p~IyA~GD~a~~~~~~t~~~~~~~l~~~A~~qgriaa 298 (427)
T TIGR03385 220 YQADMVILAIGVKPNSELAKDSQLKLGRTGAIW-VNEKFQTSVPNIYAAGDVAESKNIVTKKPAWIPLAWGANKMGRIVG 298 (427)
T ss_pred EECCEEEECCCCCCCCCCCCCCCCEECCCCCEE-CCCCCCCCCCCEEEEECEEECCCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 972899988774676424325561665888685-2765543689999982104114555688423415689999999999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780283|r 307 LEVEH 311 (321)
Q Consensus 307 ~~i~~ 311 (321)
.|+..
T Consensus 299 ~ni~g 303 (427)
T TIGR03385 299 ENIAG 303 (427)
T ss_pred HHHCC
T ss_conf 97459
No 54
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=100.00 E-value=5.5e-40 Score=252.00 Aligned_cols=295 Identities=24% Similarity=0.319 Sum_probs=202.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC---------CCCCCEEEEECCCCC----CC--------------CCC
Q ss_conf 675199998977799999999986995999967---------887756875010078----77--------------477
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG---------SDLGGQLMITESIEN----YP--------------GFA 56 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~---------~~~GG~l~~~~~i~n----~~--------------g~~ 56 (321)
.+||.+||||||+||+||-++|..|.+|+|+|- .-+||.|.+..+|+- +. |+.
T Consensus 1 ydyDlivIGgGsGGla~aKeAA~~ga~V~l~D~V~Ptp~Gt~WGiGGTCvNVGCiPKKLMHqAa~~G~~lklds~~YGWn 80 (513)
T TIGR01438 1 YDYDLIVIGGGSGGLAAAKEAAKYGAKVLLLDYVKPTPLGTKWGIGGTCVNVGCIPKKLMHQAALLGKALKLDSKKYGWN 80 (513)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96427998589734689999986099189996335698882147675357505548356788888768875535651888
Q ss_pred --C--CC--CHHHHHHHHHHHHHHCC-----------CCCCCEEEEECCCCCCCC--CCC--CCCCCCCCCCEECCCCCC
Q ss_conf --7--78--97899986643232002-----------322211332011222222--222--222222210000147766
Q gi|254780283|r 57 --T--SI--RGDWLMEQMRQQAENFG-----------TKIIQDLVVSVDLDRHPF--LVE--TQSGDLWHADAVVIATGS 115 (321)
Q Consensus 57 --~--~~--~~~~l~~~~~~~~~~~~-----------v~~~~~~V~~i~~~~~~~--~v~--~~~g~~~~a~~lIiAtG~ 115 (321)
+ .+ +...|....++++..+| ++|.++...-++++.-.. +.. .+..+.+++++++||||.
T Consensus 81 ~~~~ek~KHDW~~l~~~Vq~hi~slNw~Yrv~Lr~kKv~Y~Nayaefvdk~ki~i~~t~kGd~~ke~~~sa~~~lIaTG~ 160 (513)
T TIGR01438 81 VEDQEKVKHDWEKLSKAVQDHIKSLNWSYRVALREKKVKYINAYAEFVDKDKIVIKATDKGDKKKEEILSAKRVLIATGL 160 (513)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCHHEEEEHHCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCEEEECCEEEEECCC
T ss_conf 53664322237899998864555400320000101540266300244278468999860678763204503636980478
Q ss_pred CCEEE-EECCCCCCCEEECCCCCCCCCCC----CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCCC
Q ss_conf 42024-65277433202101211111111----1221000010255654310121013332223443433221-111211
Q gi|254780283|r 116 EVKWL-RLESEKKFQGFGVSACATCDGFF----YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS-EKILQE 189 (321)
Q Consensus 116 ~~~~~-~ipG~~~~~~~~v~~~~~~d~~~----~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~-~~~~~~ 189 (321)
+|+.| +|||..|+ |.+.|..+ ..|| .+|||++++|+|||.+|+.++.+|++..|+=.||. |+..+.
T Consensus 161 RP~yp~~ipGaKEl-------~ItSDDlFsL~~~PGK-TLvVGasYVALECaGFL~~~g~dV~V~VRSI~LrGFDqdca~ 232 (513)
T TIGR01438 161 RPKYPDDIPGAKEL-------SITSDDLFSLKKVPGK-TLVVGASYVALECAGFLAALGLDVTVLVRSILLRGFDQDCAV 232 (513)
T ss_pred CCCCCCCCCCCCCC-------CCCCHHHCCCCCCCCC-EEEECCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCCHHHHH
T ss_conf 88888888884011-------0130122036688686-578776142357788986339964999988523475778999
Q ss_pred C---CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCC-CEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH--C-CCCEE
Q ss_conf 2---23554433222231121148643334444433-3142032100000112222111232235656774--2-56180
Q gi|254780283|r 190 K---LFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVS-GVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFR--H-QLKMT 262 (321)
Q Consensus 190 ~---~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~-~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~--~-~~~~~ 262 (321)
+ .+++.||++.-.-.+.+++.-.... ..++. -++..| .+|+..+-+.|+|++|+|+.|+++-+. . ++..+
T Consensus 233 kv~ehm~e~Gvkfk~~~~p~kve~~~~Gt--PGrlk~~v~ftD-~~G~~~~eeYdTVl~AiGR~~~~~~lnLen~gv~~n 309 (513)
T TIGR01438 233 KVKEHMKEQGVKFKEQVVPKKVEKVDSGT--PGRLKVLVKFTD-KDGNTIEEEYDTVLYAIGRKADLKKLNLENVGVKVN 309 (513)
T ss_pred HHHHHHHCCCEEEEEEEEEEEEEEECCCC--CCEEEEEEEEEC-CCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEEE
T ss_conf 99988640896887014678766515889--951789999845-788744423011566625876644316321320761
Q ss_pred C-CCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 6-99799008885547898289701268844567899997999999999
Q gi|254780283|r 263 N-TNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 263 ~-~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
+ .|.|+ .|+.-|||+|.|||+||+......+.+.|+-.|++=|...+
T Consensus 310 k~~gKI~-ade~~~tn~p~iyAvGDi~e~~~ELtPvAIqaG~lLA~RLf 357 (513)
T TIGR01438 310 KKSGKIL-ADELERTNVPSIYAVGDIVEDKLELTPVAIQAGKLLADRLF 357 (513)
T ss_pred CCCCCEE-ECCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 5578775-03233578882788645654865554377887799998741
No 55
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=100.00 E-value=3.6e-40 Score=253.06 Aligned_cols=289 Identities=22% Similarity=0.283 Sum_probs=208.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 6751999989777999999999869--959999678877568750100787747777897899986643232002-3222
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAM--LKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFG-TKII 80 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g--~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~-v~~~ 80 (321)
..++|||||||.|||++|..|.+.. .+++|+|+..+- +..+.+|..+. ..++..++...+++.+.+.+ ++++
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h---l~~plL~eva~--g~l~~~~i~~p~~~~~~~~~~v~~~ 76 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH---LFTPLLYEVAT--GTLSESEIAIPLRALLRKSGNVQFV 76 (405)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCC---CCCHHHHHHHC--CCCCHHHEECCHHHHHCCCCCEEEE
T ss_conf 975699989867999999976416788718999188766---66303355632--8777565213089984235744899
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCC--EEECCCCCCC--------CCCCCC-C---
Q ss_conf 1133201122222222222222221000014776642024652774332--0210121111--------111112-2---
Q gi|254780283|r 81 QDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQ--GFGVSACATC--------DGFFYK-N--- 146 (321)
Q Consensus 81 ~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~--~~~v~~~~~~--------d~~~~~-~--- 146 (321)
.++|++||.+.+ +|.++++..+.||+||+|+|+.++.+++||+.++. .+++..+... +..... .
T Consensus 77 ~~~V~~ID~~~k--~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~ 154 (405)
T COG1252 77 QGEVTDIDRDAK--KVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRA 154 (405)
T ss_pred EEEEEEECCCCC--EEEECCCCCCCCCEEEEECCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 978999715679--899578870236389994587667689978787077778899999999999999998633564344
Q ss_pred -CCEEEEECCCCCCCCEEEEECCCC-------------CCCCCCCCCCCCCC--CC---CCCCCCCCCCCCCCCCCCEEE
Q ss_conf -100001025565431012101333-------------22234434332211--11---211223554433222231121
Q gi|254780283|r 147 -KDVIVVGGGNTAAEEALHLAKIAR-------------RVTIVHRRSSLRSE--KI---LQEKLFLQSNIDFLFDTEVVD 207 (321)
Q Consensus 147 -k~v~ViGgG~~g~e~A~~L~~~~~-------------~Vtli~r~~~l~~~--~~---~~~~~~~~~~i~~~~~~~v~~ 207 (321)
.+|+|+|||++|+|+|.+|..+.. +|+|+++.+++.+. +. ..++.+++.+|++++++.|++
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~v~l~~~Vt~ 234 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTE 234 (405)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHCCCCCHHHHHHHHHHHHHCCCEEECCCCEEE
T ss_conf 11899989882389999999999998765334786531899982571213588889999999999987978986981489
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC--CCCEECCCCEEEECCCCCCCCCCEEEEC
Q ss_conf 14864333444443331420321000001122221112322356567742--5618069979900888554789828970
Q gi|254780283|r 208 VIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRH--QLKMTNTNYIWTMPDSTATSIPGIFAAG 285 (321)
Q Consensus 208 i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~--~~~~~~~g~i~~~~~~~~Ts~p~Iya~G 285 (321)
+..+. +.+.+ ++. +|++|.++|+.|.+++. ++++ ..+.+.+|++++++..+..++|+|||+|
T Consensus 235 v~~~~-----------v~~~~---g~~-~I~~~tvvWaaGv~a~~-~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~G 298 (405)
T COG1252 235 VTPDG-----------VTLKD---GEE-EIPADTVVWAAGVRASP-LLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAG 298 (405)
T ss_pred ECCCC-----------EEECC---CCE-EEECCEEEECCCCCCCH-HHHHCCHHHHCCCCCEEECCCCCCCCCCCEEEEE
T ss_conf 76991-----------79755---883-77627799857775786-6663270221348977757875169989869971
Q ss_pred CCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1268844-----56789999799999999999974
Q gi|254780283|r 286 DVADERY-----RQAITAAAMGCMAALEVEHYLSI 315 (321)
Q Consensus 286 Dv~~~~~-----~~~~~A~~~G~~Aa~~i~~yl~~ 315 (321)
||+..+. ..+-.|..+|..+|.||.+++..
T Consensus 299 D~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g 333 (405)
T COG1252 299 DCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKG 333 (405)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 11037688879981188999999999999999649
No 56
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=100.00 E-value=3.3e-39 Score=247.43 Aligned_cols=283 Identities=22% Similarity=0.274 Sum_probs=205.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----------CCCEEEEECCCCC--------CC---------CCC-
Q ss_conf 7519999897779999999998699599996788----------7756875010078--------77---------477-
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD----------LGGQLMITESIEN--------YP---------GFA- 56 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~----------~GG~l~~~~~i~n--------~~---------g~~- 56 (321)
|||.-|||||.+|+.||..++..|.||.|=|... .||.|-...|++- |+ |+.
T Consensus 2 DyDLFVIGAGSGGvrAar~AA~~GaKVAiAE~~~hPisseeiGGvGGTCViRGCVPKKl~VYaS~f~~~ledA~gYGW~i 81 (478)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAALGAKVAIAEEYRHPISSEEIGGVGGTCVIRGCVPKKLMVYASEFAEELEDAKGYGWTI 81 (478)
T ss_pred CCCEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHCCCCEE
T ss_conf 76306870671668999999872990898215678735122377467478824407503572122302335552488468
Q ss_pred CC---CCHHHHHHH-----------HHHHHHHCCCCCCCEEEEECCCCCCCCCCCC----CCCC--CCCCCEECCCCCCC
Q ss_conf 77---897899986-----------6432320023222113320112222222222----2222--22100001477664
Q gi|254780283|r 57 TS---IRGDWLMEQ-----------MRQQAENFGTKIIQDLVVSVDLDRHPFLVET----QSGD--LWHADAVVIATGSE 116 (321)
Q Consensus 57 ~~---~~~~~l~~~-----------~~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~----~~g~--~~~a~~lIiAtG~~ 116 (321)
-+ .+...|+.. .++.+++.+++++.++..-++... ..|.- ++++ +|+|++++||||++
T Consensus 82 ~e~~~f~W~~l~~~k~~Ei~RL~~lY~~~L~~AGv~Ll~GrA~~vd~~t--Vev~~~dGsddg~ki~yTA~kIliA~Ggr 159 (478)
T TIGR01424 82 VEKARFDWKKLLAKKDKEIARLSGLYKKLLAKAGVELLEGRAELVDPNT--VEVLEKDGSDDGKKITYTAKKILIAVGGR 159 (478)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCEEEECCCE--EEEEEECCCCCCCEEEEEEEEEEEEECCC
T ss_conf 7211157789876577888866688899888533044304337836815--79741037878831678775999987787
Q ss_pred C-EEEEECCCCCCCEEECCCCCCCCCCC---CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCC---
Q ss_conf 2-02465277433202101211111111---1221000010255654310121013332223443433221--1112---
Q gi|254780283|r 117 V-KWLRLESEKKFQGFGVSACATCDGFF---YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKIL--- 187 (321)
Q Consensus 117 ~-~~~~ipG~~~~~~~~v~~~~~~d~~~---~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~--- 187 (321)
| .+|.+||.+. |.+.|..+ -.+|+|+|+|||++|+|+|.-++-+|.+||||+|++.++. |+.+
T Consensus 160 ps~kP~lPG~El--------gITSdEaf~L~~lPk~i~v~GgGYIAvEFA~I~~GLG~~vtl~yRg~~iL~GFD~d~R~~ 231 (478)
T TIGR01424 160 PSVKPELPGHEL--------GITSDEAFHLPTLPKSILVVGGGYIAVEFAGIYRGLGVQVTLIYRGEKILRGFDDDMRAE 231 (478)
T ss_pred CCCCCCCCCCCC--------CCCCHHHCCCCCCCCEEEEECCCEEEEEHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHH
T ss_conf 878888568521--------304132417200554689986760012022232367832523451665467686899999
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH--H-CCCCEECC
Q ss_conf 11223554433222231121148643334444433314203210000011222211123223565677--4-25618069
Q gi|254780283|r 188 QEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--R-HQLKMTNT 264 (321)
Q Consensus 188 ~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~--~-~~~~~~~~ 264 (321)
+.+-+++.+|++++...++.|..... |.......-.+..++.+|.|++|+|+.||++-| + -++++++.
T Consensus 232 ~~~~le~~Gi~i~~~~~~~~i~~~~~---------GR~~~~~sGe~~~~~vAd~vl~AtGR~Pn~~GLgLE~aGV~~~~~ 302 (478)
T TIGR01424 232 LAEELEERGIRIVPKDSVTSIEKVDD---------GRLKVTLSGEKDEEIVADVVLFATGRVPNVKGLGLEAAGVELNDK 302 (478)
T ss_pred HHHHHHCCCEEEEECCHHHHHHCCCC---------CCEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCHHCCCEEECC
T ss_conf 99987529738950104436420789---------878999746899816543323200887765763610115065101
Q ss_pred ----------CCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf ----------97990088855478982897012688445678999979999999
Q gi|254780283|r 265 ----------NYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALE 308 (321)
Q Consensus 265 ----------g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~ 308 (321)
|.|. +|+|-|||.|+|||+|||++. .++.+.|+.||.-=|..
T Consensus 303 sieGPGystmgAi~-Vd~YS~T~~P~IyAvGDvTdR-inLTPVAi~Ea~aFa~t 354 (478)
T TIGR01424 303 SIEGPGYSTMGAIA-VDEYSRTSVPSIYAVGDVTDR-INLTPVAIREAAAFAET 354 (478)
T ss_pred CCCCCCCCCCCCEE-ECCCCCCCCCCEEEEECCCCC-CCCCHHHHHHHHHHHHH
T ss_conf 01478744125366-515467885777886031254-45784788764777645
No 57
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00 E-value=1.6e-39 Score=249.36 Aligned_cols=283 Identities=19% Similarity=0.164 Sum_probs=197.8
Q ss_pred EEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 99998977799999999986---995999967887756875010078774777789789998664323200232221133
Q gi|254780283|r 8 ILIIGSGPAGYTAAIYAARA---MLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDLV 84 (321)
Q Consensus 8 VvIIG~GpAGl~aA~~l~r~---g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~V 84 (321)
|||||||.||+++|.+|++. +.+++|||++.. .+..+.++.+.+ ...+.+++.-.+++...+.+++++.++|
T Consensus 2 iVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~---~~y~~~lp~~~~--g~~~~~~i~~~~~~~~~~~gv~~i~~~V 76 (364)
T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST---TPYSGMLPGMIA--GHYSLDEIRIDLRRLARQAGARFVIAEA 76 (364)
T ss_pred EEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCC---CEECCHHHHHHH--CCCCHHHEECCHHHHHHHCCCEEEEEEE
T ss_conf 99999609999999997041789983999999886---516251699974--0477999221689999777949996378
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCC--EEECCCCCCC-------CCCCCCCCCEEEEECC
Q ss_conf 201122222222222222221000014776642024652774332--0210121111-------1111122100001025
Q gi|254780283|r 85 VSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQ--GFGVSACATC-------DGFFYKNKDVIVVGGG 155 (321)
Q Consensus 85 ~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~--~~~v~~~~~~-------d~~~~~~k~v~ViGgG 155 (321)
++||.+++ +|.+++|+++.||+||||||+.++.+++||..+.. .+.+..+... .......++++|+|+|
T Consensus 77 ~~ID~~~k--~V~~~~g~~l~YD~LViAtGs~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvGgG 154 (364)
T TIGR03169 77 TGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGG 154 (364)
T ss_pred EEEECCCC--EEEECCCCEEECCEEEEECCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf 99976889--8998899887368899943677788999972026422477999999999999876405799645897858
Q ss_pred CCCCCCEEEEECC----CC--CCCCCCCCCCCCC--CC---CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCE
Q ss_conf 5654310121013----33--2223443433221--11---121122355443322223112114864333444443331
Q gi|254780283|r 156 NTAAEEALHLAKI----AR--RVTIVHRRSSLRS--EK---ILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGV 224 (321)
Q Consensus 156 ~~g~e~A~~L~~~----~~--~Vtli~r~~~l~~--~~---~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v 224 (321)
.+|+|+|..|.+. +. +|.+ +..+++.. ++ ...++.+++.+|++++++.++++..+. +
T Consensus 155 ~~gvE~a~~l~~~~~~~~~~~~v~i-~~~~~~l~~~~~~~~~~~~~~l~~~gI~v~~~~~v~~v~~~~-----------v 222 (364)
T TIGR03169 155 AAGVEIALALRRRLPKRGLRGQVTL-IAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGA-----------L 222 (364)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEEEE-ECCCCCCHHCCHHHHHHHHHHHHHCCCEEEECCEEEEECCCC-----------E
T ss_conf 1799999999999874687427998-357751012599999999999997795698375368977995-----------1
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCC-CCCCEEEECCCCCCC----HHHHHHHH
Q ss_conf 4203210000011222211123223565677425618069979900888554-789828970126884----45678999
Q gi|254780283|r 225 RLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTAT-SIPGIFAAGDVADER----YRQAITAA 299 (321)
Q Consensus 225 ~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~T-s~p~Iya~GDv~~~~----~~~~~~A~ 299 (321)
.+. +..++++|.++|++|.+||.-+.+..+.++++|++.+ |+++|+ +.|+|||+|||+..+ .++...|+
T Consensus 223 ~l~-----~g~~i~~d~vi~~~G~~p~~~~~~~~l~~d~~G~I~V-d~~lq~~~~~~VfAiGD~a~~~~~p~pk~g~~A~ 296 (364)
T TIGR03169 223 ILA-----DGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRV-DPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAV 296 (364)
T ss_pred EEC-----CCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEE-CCCCEECCCCCEEEECCEECCCCCCCCCCCHHHH
T ss_conf 837-----9978963089988887788657744663078997887-8873768999999971543688999997438899
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9799999999999974
Q gi|254780283|r 300 AMGCMAALEVEHYLSI 315 (321)
Q Consensus 300 ~~G~~Aa~~i~~yl~~ 315 (321)
.+|..+|.||.+.|..
T Consensus 297 ~qa~~~a~Ni~~~l~g 312 (364)
T TIGR03169 297 RQAPILAANLRASLRG 312 (364)
T ss_pred HHHHHHHHHHHHHHCC
T ss_conf 9999999999999669
No 58
>KOG0405 consensus
Probab=100.00 E-value=2.3e-37 Score=236.67 Aligned_cols=286 Identities=25% Similarity=0.323 Sum_probs=199.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEEECCCCC-----------------CCCCCCCC----C
Q ss_conf 76751999989777999999999869959999678-87756875010078-----------------77477778----9
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIEN-----------------YPGFATSI----R 60 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~~~~i~n-----------------~~g~~~~~----~ 60 (321)
.++||.++||||.+|+.+|.+++..|.++.|+|.. .+||.|.+..++.. =.||+... .
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~fd 97 (478)
T KOG0405 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSFD 97 (478)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCCCCEEEEEHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 44236699847861367767787538537998637786744786045641367744455677545664298534446776
Q ss_pred HHHH-------HHHH----HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCC--CCCCCEECCCCCCCCEEEEECCCCC
Q ss_conf 7899-------9866----4323200232221133201122222222222222--2210000147766420246527743
Q gi|254780283|r 61 GDWL-------MEQM----RQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGD--LWHADAVVIATGSEVKWLRLESEKK 127 (321)
Q Consensus 61 ~~~l-------~~~~----~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g~--~~~a~~lIiAtG~~~~~~~ipG~~~ 127 (321)
...+ +.++ +..+.+.+++++.++..-+...+ ..|+..++. .|++++++||||.+|.+|+|||.+.
T Consensus 98 W~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~--v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIpG~E~ 175 (478)
T KOG0405 98 WKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGE--VEVEVNDGTKIVYTAKHILIATGGRPIIPNIPGAEL 175 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC--EEEEECCCEEEEEECCEEEEEECCCCCCCCCCCHHH
T ss_conf 799875116899988789885423154069962678758994--479953881578721408997378467899985231
Q ss_pred CCEEECCCCCCCCCCC---CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC-CC-CCCCCC---CCCCCCCCCC
Q ss_conf 3202101211111111---12210000102556543101210133322234434332-21-111211---2235544332
Q gi|254780283|r 128 FQGFGVSACATCDGFF---YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL-RS-EKILQE---KLFLQSNIDF 199 (321)
Q Consensus 128 ~~~~~v~~~~~~d~~~---~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l-~~-~~~~~~---~~~~~~~i~~ 199 (321)
..+.|+++ ..+|+++|+|+|++|+|+|..++.+|++++|+.|.+.. |. ++...+ +-++..+|++
T Consensus 176 --------gidSDgff~Lee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginv 247 (478)
T KOG0405 176 --------GIDSDGFFDLEEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINV 247 (478)
T ss_pred --------CCCCCCCCCHHHCCCEEEEECCCEEEEEHHHHHHHCCCEEEEEEECCHHHCCHHHHHHHHHHHHHHHCCEEE
T ss_conf --------416642314111685179974645887755577534870379996121330341888988998764045264
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH---CCCCEECCCCEEEECCCCCC
Q ss_conf 222311211486433344444333142032100000112222111232235656774---25618069979900888554
Q gi|254780283|r 200 LFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFR---HQLKMTNTNYIWTMPDSTAT 276 (321)
Q Consensus 200 ~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~---~~~~~~~~g~i~~~~~~~~T 276 (321)
+.++.++++...... ..+.....+ ..-.+|.++|++|++||+.-+. -++.++.+|.|+ +|++++|
T Consensus 248 h~~s~~~~v~K~~~g---------~~~~i~~~~--~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~Ii-vDeYq~T 315 (478)
T KOG0405 248 HKNSSVTKVIKTDDG---------LELVITSHG--TIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAII-VDEYQNT 315 (478)
T ss_pred CCCCCCEEEEECCCC---------CEEEEEECC--CCCCCCEEEEEECCCCCCCCCCCHHCCEEECCCCCEE-EECCCCC
T ss_conf 145540235652787---------258997246--0403547998715787745566221030667889889-7422247
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78982897012688445678999979999999999
Q gi|254780283|r 277 SIPGIFAAGDVADERYRQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 277 s~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 311 (321)
|+|+||++||+++. ..+.+.|+.+|..-|...+.
T Consensus 316 nvp~I~avGDv~gk-~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405 316 NVPSIWAVGDVTGK-INLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred CCCCEEEECCCCCC-EECCHHHHHHHHHHHHHHHC
T ss_conf 88725873033384-74301887640267777616
No 59
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=100.00 E-value=6.3e-38 Score=239.99 Aligned_cols=265 Identities=20% Similarity=0.305 Sum_probs=189.8
Q ss_pred EEEECCCHHHHHHHHHHHH----CCCCEEEEECC-CC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9999897779999999998----69959999678-87-756875010078774777789789998664323200232221
Q gi|254780283|r 8 ILIIGSGPAGYTAAIYAAR----AMLKPVIIAGS-DL-GGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQ 81 (321)
Q Consensus 8 VvIIG~GpAGl~aA~~l~r----~g~~v~iie~~-~~-GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~ 81 (321)
+||||-|++|.-+--++.. ..++++||-.+ ++ --++..++.+. ...+-+++.=.-.+..++.+|+++.
T Consensus 1 LvlvGnGM~G~R~iE~vl~~~~~~~f~Itvfg~EP~~~YdRv~LSs~l~------G~~~~~~l~L~~~D~y~~~~i~ly~ 74 (813)
T TIGR02374 1 LVLVGNGMVGHRLIEEVLKKDDKDEFEITVFGEEPHPAYDRVLLSSVLQ------GEADLEDLTLNSKDWYEKHGIKLYT 74 (813)
T ss_pred CEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCEEECEEEC------CCCCHHHCCCCCCCCCCCCCEEEEE
T ss_conf 9787047410347776751210177308998258895436022110104------6455778066878831227548987
Q ss_pred E-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCC---CCCCCE------EE
Q ss_conf 1-3320112222222222222222100001477664202465277433202101211111111---122100------00
Q gi|254780283|r 82 D-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFF---YKNKDV------IV 151 (321)
Q Consensus 82 ~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~---~~~k~v------~V 151 (321)
+ +|+.||.+.+ +|.++-+++..||.||+||||.|..|||||.++...+.......+|... .+-|+= +|
T Consensus 75 ge~vi~id~~~k--~v~t~a~r~~~YD~LilATGS~pfilPipG~D~~~v~~fRti~D~~A~~~~A~~~~~aGhtdGGaV 152 (813)
T TIGR02374 75 GERVIQIDREEK--SVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAILAAAQRFKKAGHTDGGAV 152 (813)
T ss_pred CCEEEEEECCCC--EEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 688899835764--587047763357517873066573086688888861587056799999999986312676678558
Q ss_pred EECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCCCCCCC
Q ss_conf 10255654310121013332223443433221111------211223554433222--2311211486433344444333
Q gi|254780283|r 152 VGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKI------LQEKLFLQSNIDFLF--DTEVVDVIGSIPEPPLFPSVSG 223 (321)
Q Consensus 152 iGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~~~~------~~~~~~~~~~i~~~~--~~~v~~i~g~~~~~~~~~~~~~ 223 (321)
||||-.|+|.|..|..+|-+|++||..|.|...+. +..+-+++.|+.|+. ...-.++.++... ....+
T Consensus 153 iGGGLLGLEAA~aL~~LG~~v~Vi~~~p~LM~~QLD~~aG~lL~~~le~~G~~~l~Gt~k~t~eiv~~~d~----~~~~~ 228 (813)
T TIGR02374 153 IGGGLLGLEAARALKNLGMDVSVIELAPFLMAKQLDQTAGRLLQRELEKKGLTVLLGTEKDTVEIVGEDDV----EKVER 228 (813)
T ss_pred ECCCHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEECCCH----HHHCE
T ss_conf 86741588999999877970644676489899999999999999999857957986176110576415640----12312
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCEECCCCEEEECCCCCCCCCCEEEECCCCCC
Q ss_conf 1420321000001122221112322356567742-561806997990088855478982897012688
Q gi|254780283|r 224 VRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRH-QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADE 290 (321)
Q Consensus 224 v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~-~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~ 290 (321)
++++|+ .+|++|.|++|+|.|||.+|..+ ++...+++.|++ |++||||.|+|||+|.|+.+
T Consensus 229 ~rf~DG-----~~l~aDlvv~A~GirP~~~LA~~aGl~v~~RrGiiv-nd~~qTs~P~IYAvGEcA~~ 290 (813)
T TIGR02374 229 LRFKDG-----SSLEADLVVFAAGIRPRDELAAEAGLKVNDRRGIIV-NDSMQTSDPDIYAVGECAEH 290 (813)
T ss_pred EECCCC-----CEEEECEEEEECCCCCCHHHHHHCCCCCCCCCCEEE-CCCCCCCCCCEEEEEEEEEE
T ss_conf 242389-----788703799951566636899865973547676787-26223788873356655510
No 60
>KOG1335 consensus
Probab=100.00 E-value=7.6e-36 Score=227.82 Aligned_cols=289 Identities=23% Similarity=0.299 Sum_probs=197.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCEEEEECCCCC---------C----------CCC---CCCCC
Q ss_conf 675199998977799999999986995999967-887756875010078---------7----------747---77789
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-SDLGGQLMITESIEN---------Y----------PGF---ATSIR 60 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-~~~GG~l~~~~~i~n---------~----------~g~---~~~~~ 60 (321)
++|||+|||+||+|+-||+.++++|++++++|+ ..+||.|++..++.. | -|. +....
T Consensus 38 ~~~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~~d 117 (506)
T KOG1335 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVSLD 117 (506)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHCCEEEEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEECC
T ss_conf 66788998778725899999987154168873157536545643633538876333789988766898609311320047
Q ss_pred HHHHHHHH-----------HHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCEEEEECCCCC
Q ss_conf 78999866-----------432320023222113320112222222222222--22210000147766420246527743
Q gi|254780283|r 61 GDWLMEQM-----------RQQAENFGTKIIQDLVVSVDLDRHPFLVETQSG--DLWHADAVVIATGSEVKWLRLESEKK 127 (321)
Q Consensus 61 ~~~l~~~~-----------~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g--~~~~a~~lIiAtG~~~~~~~ipG~~~ 127 (321)
-+.+++.. ....++.++++.++.-.-+++ +...+...+| ..+++|++|+|||+. .+++||.+-
T Consensus 118 l~~~~~~k~n~vk~Lt~gi~~lfkknkVt~~kG~gs~~~p--~~V~v~k~dg~~~ii~aKnIiiATGSe--V~~~PGI~I 193 (506)
T KOG1335 118 LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDP--NKVSVKKIDGEDQIIKAKNIIIATGSE--VTPFPGITI 193 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCC--CEEEEECCCCCCEEEEEEEEEEECCCC--CCCCCCEEE
T ss_conf 8999987777899976689988763483899513765387--468885358973378631699961775--677897576
Q ss_pred CCEEECCCCCCCCCCC---CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCC--CC---CCCCCCCCCCCCC
Q ss_conf 3202101211111111---12210000102556543101210133322234434332211--11---2112235544332
Q gi|254780283|r 128 FQGFGVSACATCDGFF---YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSE--KI---LQEKLFLQSNIDF 199 (321)
Q Consensus 128 ~~~~~v~~~~~~d~~~---~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~~--~~---~~~~~~~~~~i~~ 199 (321)
-.-+-+. .++.+ .-+|+++|+|+|.+|+|++.-++++|.+||+++.-+++... .+ ..++++.+.+++|
T Consensus 194 DekkIVS----StgALsL~~VPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgi~F 269 (506)
T KOG1335 194 DEKKIVS----STGALSLKEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKF 269 (506)
T ss_pred CCCEEEE----CCCCCCHHHCCCEEEEECCCEEEEEHHHHHHHCCCEEEEEEEHHHHCCCCCHHHHHHHHHHHHHCCCEE
T ss_conf 3766871----477343311751579974745665546688763771799984434446558899999999998638236
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH---HCCCCEECCCCEEEECCCCCC
Q ss_conf 22231121148643334444433314203210000011222211123223565677---425618069979900888554
Q gi|254780283|r 200 LFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF---RHQLKMTNTNYIWTMPDSTAT 276 (321)
Q Consensus 200 ~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~---~~~~~~~~~g~i~~~~~~~~T 276 (321)
++++.++.+..+.+. .-.+++.+.++++..+++||.+++++|++|-+.-| +-+++.|.+|++++ +..++|
T Consensus 270 ~l~tkv~~a~~~~dg------~v~i~ve~ak~~k~~~le~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v-~~~f~t 342 (506)
T KOG1335 270 KLGTKVTSATRNGDG------PVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIV-NTRFQT 342 (506)
T ss_pred EECCEEEEEEECCCC------CEEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCHHHCCCCCCCCCCEEC-CCCCCC
T ss_conf 723278875106888------5799997557785068884289998066445466880430655365664002-650134
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 78982897012688445678999979999999
Q gi|254780283|r 277 SIPGIFAAGDVADERYRQAITAAAMGCMAALE 308 (321)
Q Consensus 277 s~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~ 308 (321)
.+|+||++|||+.+|+ +++.|-.||-.|...
T Consensus 343 ~vP~i~~IGDv~~gpM-LAhkAe~egI~~VE~ 373 (506)
T KOG1335 343 KVPHIYAIGDVTLGPM-LAHKAEEEGIAAVEG 373 (506)
T ss_pred CCCCEEEECCCCCCCH-HHHHHHHHCHHHEEE
T ss_conf 5884588325677414-310102414223000
No 61
>KOG4716 consensus
Probab=100.00 E-value=3.6e-35 Score=223.88 Aligned_cols=295 Identities=24% Similarity=0.293 Sum_probs=200.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC--C-------CCCCEEEEECCCC----------------------
Q ss_conf 87675199998977799999999986995999967--8-------8775687501007----------------------
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG--S-------DLGGQLMITESIE---------------------- 50 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~--~-------~~GG~l~~~~~i~---------------------- 50 (321)
.+.+||.+|||||.+||+||-++++.|.++.++|- . -+||.|.+..+|.
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW 95 (503)
T KOG4716 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW 95 (503)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 34774479986885136677998860870799961245788874555854665365318988888877788777886287
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC----CCCCCEEEEECCCCC---CCCC--CCCCCC--CCCCCCEECCCCCCCCEE
Q ss_conf 87747777897899986643232002----322211332011222---2222--222222--222100001477664202
Q gi|254780283|r 51 NYPGFATSIRGDWLMEQMRQQAENFG----TKIIQDLVVSVDLDR---HPFL--VETQSG--DLWHADAVVIATGSEVKW 119 (321)
Q Consensus 51 n~~g~~~~~~~~~l~~~~~~~~~~~~----v~~~~~~V~~i~~~~---~~~~--v~~~~g--~~~~a~~lIiAtG~~~~~ 119 (321)
|++...-.-....+.+..+.+++.+| ++++...|..+..-. +.++ .+..+| +.+++++++||||.+|+.
T Consensus 96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrY 175 (503)
T KOG4716 96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRY 175 (503)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCEEECCCCEEEEECCCCCEEEEECCEEEEEECCCCCC
T ss_conf 77623355468999999987766235258987310101356021454266258985477845786145389972687789
Q ss_pred EEECCCCCCCEEECCCCCCCCCCC---CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC-CCCCCCCC---C
Q ss_conf 465277433202101211111111---1221000010255654310121013332223443433221-11121122---3
Q gi|254780283|r 120 LRLESEKKFQGFGVSACATCDGFF---YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS-EKILQEKL---F 192 (321)
Q Consensus 120 ~~ipG~~~~~~~~v~~~~~~d~~~---~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~-~~~~~~~~---~ 192 (321)
|+|||..++. .+.|..+ +..-+.+|||+|++|+|||.+|+.+|-+||+..|+--|+. ++.+.+++ +
T Consensus 176 p~IpG~~Ey~-------ITSDDlFsl~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m 248 (503)
T KOG4716 176 PDIPGAKEYG-------ITSDDLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHM 248 (503)
T ss_pred CCCCCCEEEE-------ECCCCCCCCCCCCCCEEEECCCEEEEEHHHHHHHCCCCCEEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9999842521-------123321055689994489745134542135675338885799987410252699999999999
Q ss_pred CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH---CCCCEEC-CCCEE
Q ss_conf 5544332222311211486433344444333142032100000112222111232235656774---2561806-99799
Q gi|254780283|r 193 LQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFR---HQLKMTN-TNYIW 268 (321)
Q Consensus 193 ~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~---~~~~~~~-~g~i~ 268 (321)
++.+++|+-...+.+++.-.... -.+..++..+++..+-+.|.|+|++|+++.++-+. .++..++ .|.|+
T Consensus 249 ~~~Gikf~~~~vp~~Veq~~~g~------l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~ 322 (503)
T KOG4716 249 EERGIKFLRKTVPERVEQIDDGK------LRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIP 322 (503)
T ss_pred HHHCCCEEECCCCEEEEECCCCC------EEEEEECCCCCCCCCCHHHHHHHHHCCCCCHHHCCCCCCCEEECCCCCCCC
T ss_conf 97097334033530102204772------799961255664441022320312245110100388753325324478644
Q ss_pred EECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 008885547898289701268844567899997999999999
Q gi|254780283|r 269 TMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 269 ~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
+|+..+||+|+|||+||+.-....+...|+-+|+.-|...+
T Consensus 323 -v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf 363 (503)
T KOG4716 323 -VDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLF 363 (503)
T ss_pred -CCHHHHCCCCCEEEECCEECCCCCCCHHHHHHCHHHHHHHH
T ss_conf -57677357871688500006986565254353569999874
No 62
>KOG1336 consensus
Probab=100.00 E-value=1.8e-35 Score=225.63 Aligned_cols=266 Identities=24% Similarity=0.302 Sum_probs=193.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 7519999897779999999998699--59999678877568750100787747777897899986643232002322211
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAML--KPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~--~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
...++|||+||+|.-|+..++..+. +++|+-++.. .+. .....+.+... .+..+..+..+..+.++++++.+
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~----~py-dr~~Ls~~~~~-~~~~~a~r~~e~Yke~gIe~~~~ 147 (478)
T KOG1336 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYL----LPY-DRARLSKFLLT-VGEGLAKRTPEFYKEKGIELILG 147 (478)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC----CCC-CCHHCCCCEEE-CCCCCCCCCHHHHHHCCCEEEEC
T ss_conf 5449997688203355766775288766078742334----765-40001332010-14562105826676538237970
Q ss_pred -EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCC------CCCCCCCEEEEECC
Q ss_conf -33201122222222222222221000014776642024652774332021012111111------11122100001025
Q gi|254780283|r 83 -LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDG------FFYKNKDVIVVGGG 155 (321)
Q Consensus 83 -~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~------~~~~~k~v~ViGgG 155 (321)
.|+++|...+ +|.+++|+.++|++||||||+.+++|++||.+ .+++++....+. ....+..|+++|+|
T Consensus 148 t~v~~~D~~~K--~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~---~~nv~~ireieda~~l~~~~~~~~~vV~vG~G 222 (478)
T KOG1336 148 TSVVKADLASK--TLVLGNGETLKYSKLIIATGSSAKTLDIPGVE---LKNVFYLREIEDANRLVAAIQLGGKVVCVGGG 222 (478)
T ss_pred CEEEEEECCCC--EEEECCCCEEECCEEEEEECCCCCCCCCCCCC---CCCEEEECCHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 30588641465--79967983530106999615766658988715---61146651578889999871558569997752
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCC----C--CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf 56543101210133322234434332211----1--12112235544332222311211486433344444333142032
Q gi|254780283|r 156 NTAAEEALHLAKIARRVTIVHRRSSLRSE----K--ILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNK 229 (321)
Q Consensus 156 ~~g~e~A~~L~~~~~~Vtli~r~~~l~~~----~--~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~ 229 (321)
..|+|+|..|...+.+||++++.+.+... . -..+.++++.+|+++.++.+.++.++.... +..+.+.+
T Consensus 223 ~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Ge-----v~~V~l~d- 296 (478)
T KOG1336 223 FIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGE-----VSEVKLKD- 296 (478)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCEEECCCCCCCC-----EEEEEECC-
T ss_conf 889999999974583579972676410434417789999999984593999804200012478873-----79998124-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCH
Q ss_conf 100000112222111232235656774256180699799008885547898289701268844
Q gi|254780283|r 230 KEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERY 292 (321)
Q Consensus 230 ~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~ 292 (321)
..++++|.|++++|.+||+.+++.+..++.+|++. +|+.+|||+|+|||+|||++-+.
T Consensus 297 ----g~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~-V~~~f~t~~~~VyAiGDva~fp~ 354 (478)
T KOG1336 297 ----GKTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIK-VDEFFQTSVPNVYAIGDVATFPL 354 (478)
T ss_pred ----CCEECCCEEEEEECCCCCCCCCCCCCEECCCCCEE-EHHCEEECCCCCCCCCCEEECCC
T ss_conf ----87742676998016624665443441002468775-00001203587001141440001
No 63
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=100.00 E-value=4.6e-34 Score=217.45 Aligned_cols=286 Identities=22% Similarity=0.261 Sum_probs=201.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 5199998977799999999986---9959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARA---MLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~---g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
.+++|||.|+||..+.-++... ...++++-.+... .|....+..+ ++...+.+++.-.-.+..++.+++++.+
T Consensus 4 ~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~--nY~Ri~Ls~v--l~~~~~~edi~l~~~dwy~~~~i~L~~~ 79 (793)
T COG1251 4 QKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP--NYNRILLSSV--LAGEKTAEDISLNRNDWYEENGITLYTG 79 (793)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCC--CCCCEEECCC--CCCCCCHHHHHCCCHHHHHHCCCEEECC
T ss_conf 04899924640267999998308655048995267776--6441000000--2898668887603220587759189718
Q ss_pred -EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCC--CCC-CCEEEEECCCCC
Q ss_conf -3320112222222222222222100001477664202465277433202101211111111--122-100001025565
Q gi|254780283|r 83 -LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFF--YKN-KDVIVVGGGNTA 158 (321)
Q Consensus 83 -~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~--~~~-k~v~ViGgG~~g 158 (321)
.|+.|+..++ .|.++.|..+.||+||+||||.|..||+||-+.+..........++... .++ ++-+|||||-.|
T Consensus 80 ~~v~~idr~~k--~V~t~~g~~~~YDkLilATGS~pfi~PiPG~d~~~v~~~R~i~D~~am~~~ar~~~~avVIGGGLLG 157 (793)
T COG1251 80 EKVIQIDRANK--VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLG 157 (793)
T ss_pred CEEEEECCCCC--EEECCCCCEEECCEEEECCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHCCCCCEEECCCHHH
T ss_conf 80478516765--6884688584043278705765565678998778712783199999999998606885897551141
Q ss_pred CCCEEEEECCCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 4310121013332223443433221------1112112235544332222311211486433344444333142032100
Q gi|254780283|r 159 AEEALHLAKIARRVTIVHRRSSLRS------EKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEG 232 (321)
Q Consensus 159 ~e~A~~L~~~~~~Vtli~r~~~l~~------~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g 232 (321)
+|+|..|..+|-+++++|..+.+.+ ...+..+.+++.+++++++....++.+ .....++++.+.
T Consensus 158 lEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g-------~~~~~~vr~~DG--- 227 (793)
T COG1251 158 LEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVG-------EDKVEGVRFADG--- 227 (793)
T ss_pred HHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHCCEEECCCHHHHHHC-------CCCEEEEEECCC---
T ss_conf 6788788747973489873366889765268899999998860604531320245645-------764036760568---
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCH---HHHHHHHHHHHHHHHHH
Q ss_conf 000112222111232235656774256180699799008885547898289701268844---56789999799999999
Q gi|254780283|r 233 NFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERY---RQAITAAAMGCMAALEV 309 (321)
Q Consensus 233 ~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~---~~~~~A~~~G~~Aa~~i 309 (321)
..+++|.|+++.|++||.++..+.+.--++| +++|++||||.|+|||+|+|+.+.. -++.-+.-+++++|.++
T Consensus 228 --~~i~ad~VV~a~GIrPn~ela~~aGlavnrG--Ivvnd~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeqa~v~a~hl 303 (793)
T COG1251 228 --TEIPADLVVMAVGIRPNDELAKEAGLAVNRG--IVVNDYMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVLADHL 303 (793)
T ss_pred --CCCCCEEEEEECCCCCCCHHHHHCCCCCCCC--EEECCCCCCCCCCEEEHHHHHHHCCCCCEEHHHHHHHHHHHHHHH
T ss_conf --7344206999623046617678617665898--056365555677766517689761844001268999999999875
Q ss_pred HH
Q ss_conf 99
Q gi|254780283|r 310 EH 311 (321)
Q Consensus 310 ~~ 311 (321)
..
T Consensus 304 ~~ 305 (793)
T COG1251 304 CG 305 (793)
T ss_pred CC
T ss_conf 06
No 64
>PTZ00318 NADH dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-33 Score=214.44 Aligned_cols=288 Identities=17% Similarity=0.178 Sum_probs=183.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHH---HHHHHHHCCCCCCC
Q ss_conf 751999989777999999999869959999678877568750100787747777897899986---64323200232221
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQ---MRQQAENFGTKIIQ 81 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~---~~~~~~~~~v~~~~ 81 (321)
+.+|||||||+||+++|..|.+...+++|||++++ . +..+.++-... ..++...++.- +...+.+....|+.
T Consensus 10 KprVVIlGgGfaGl~~ak~L~~~~~~VtLVdp~ny--~-lF~PLL~qvAt--GtLe~r~I~~Pir~i~~~~~~~~~~f~~ 84 (514)
T PTZ00318 10 KPNVVVVGTGWAGCYFARHLNPKLANLHVLSTRNH--M-VFTPLLPQTTT--GTLEFRSVCEPITRIQPALAKLPNRFLR 84 (514)
T ss_pred CCEEEEECCCHHHHHHHHHHCCCCCCEEEECCCCC--C-CCCHHHHHHHH--CCCCHHHEECCHHHHHHHHCCCCCEEEE
T ss_conf 88589999769999999973868982899999998--5-01021676620--5777577222178876765136745999
Q ss_pred EEEEECCCCCCCCCCCC---C--------CCCCCCCCEECCCCCCCCEEEEECCCCCC--CEEECCCCCCC---------
Q ss_conf 13320112222222222---2--------22222100001477664202465277433--20210121111---------
Q gi|254780283|r 82 DLVVSVDLDRHPFLVET---Q--------SGDLWHADAVVIATGSEVKWLRLESEKKF--QGFGVSACATC--------- 139 (321)
Q Consensus 82 ~~V~~i~~~~~~~~v~~---~--------~g~~~~a~~lIiAtG~~~~~~~ipG~~~~--~~~~v~~~~~~--------- 139 (321)
+.+.+|+.+.+..++.. . +.-++.||+||+|+|+.++.+++||++++ .-+++..+...
T Consensus 85 ~~v~~ID~~~k~V~~~~~~~~~~~~~~~~~~~~l~YD~LVlA~Gs~tn~FGipGv~E~A~~LKtl~dA~~iR~~il~~~e 164 (514)
T PTZ00318 85 CVVYDVNFDEKQVKCVGVGVVGGSFNAPVNTFSVKYDKLILAHGARPNTFNVPGVEERAFFLREVNEARGIRKRLVQNIM 164 (514)
T ss_pred EEEEEEEHHHCEEEEEEECCCCCCCCCCCCCCEECCCEEEECCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99988712107899974012466544445663642887898678655678999879846657889999999999999999
Q ss_pred -------CCCCC-CCCCEEEEECCCCCCCCEEEEECCC--------------CCCCCCCCCCCCCC-CCC---CCCCCCC
Q ss_conf -------11111-2210000102556543101210133--------------32223443433221-111---2112235
Q gi|254780283|r 140 -------DGFFY-KNKDVIVVGGGNTAAEEALHLAKIA--------------RRVTIVHRRSSLRS-EKI---LQEKLFL 193 (321)
Q Consensus 140 -------d~~~~-~~k~v~ViGgG~~g~e~A~~L~~~~--------------~~Vtli~r~~~l~~-~~~---~~~~~~~ 193 (321)
+.... +--+++|||||++|+|+|.+|+++- .+|+|++...-|.. ++. ..++.++
T Consensus 165 ~A~~~~~d~e~r~rlLtfVVVGGGpTGVElAgeLad~~~~~~~~~~~~l~~~~~V~Liea~~iLp~f~~~ls~~a~~~L~ 244 (514)
T PTZ00318 165 TANLPTTSIEEAKRLLHTVVVGGGPTGVEFAANLAEFFRDDVKNINTSLVPFCKVTVLEAGEVFGSFDLRVRRWGKRRLD 244 (514)
T ss_pred HHHCCCCCHHHHEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEECHHHHHCCCHHHHHHHHHHHH
T ss_conf 85078899789324202789777762032899999999988764281230100378860500121089899999999998
Q ss_pred CCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCEECCCCEEEECC
Q ss_conf 5443322223112114864333444443331420321000001122221112322356567742-561806997990088
Q gi|254780283|r 194 QSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRH-QLKMTNTNYIWTMPD 272 (321)
Q Consensus 194 ~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~-~~~~~~~g~i~~~~~ 272 (321)
+.+|+++.+ .++++..+ .+.+. +| ..++++.++|+.|.+++. +.+. .+..+++|.+.+ |+
T Consensus 245 ~~GVeV~~~-~vv~v~~~-----------~v~~~---~G--e~i~~~tvVWtAGV~a~p-l~~~l~~~~~~~GRi~V-d~ 305 (514)
T PTZ00318 245 ALGVRIVKG-AVVAVTDK-----------EVFTK---SG--EVLPTGLVVWSTGVGPSP-LTKALKVDRTSRGRISI-DD 305 (514)
T ss_pred HCCEEEEEC-CEEEEECC-----------EEEEC---CC--CEEECCEEEEECCCCCCC-HHHHCCCCCCCCCCEEE-CC
T ss_conf 789499836-28998689-----------58967---98--199866899915887670-36656886457983788-99
Q ss_pred CCC-----CCCCCEEEECCCCCCC---H-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 855-----4789828970126884---4-567899997999999999999742
Q gi|254780283|r 273 STA-----TSIPGIFAAGDVADER---Y-RQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 273 ~~~-----Ts~p~Iya~GDv~~~~---~-~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
++| .++|+|||+|||+... . .++-.|+-+|+.+|.|+.+.+...
T Consensus 306 ~LrV~~~~~g~p~VfAiGD~A~~~~~plP~tAQvA~QQG~~lAkni~~~l~g~ 358 (514)
T PTZ00318 306 HLRVLRDGKPIPDVFAIGDCAANEELPLPTLAAVASRQGRYLAKKINNELKGK 358 (514)
T ss_pred CCEECCCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 86767888999976884233467899899930789999999999999986399
No 65
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=100.00 E-value=2.5e-33 Score=213.18 Aligned_cols=292 Identities=24% Similarity=0.230 Sum_probs=196.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 7519999897779999999998699599996788-775687501007877477778978999866432320023222113
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDL 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 83 (321)
.++|+|||+|||||+||..|.+.|++|+++|+.+ .||.+.. .+|.|.. ..+++++..+.+.+.|++|..+.
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y-----GIP~~kl---~k~i~d~~i~~l~~~Gv~~~~~~ 194 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY-----GIPDFKL---PKDILDRRLELLERSGVEFKLNV 194 (457)
T ss_pred CCEEEEECCCCHHHHCHHHHHHCCCEEEECCCCCCCCEEEEE-----CCCHHHC---CCHHHHHHHHHHHHCCCEEEECC
T ss_conf 767999888951555889998689879982666777447981-----4844646---42068999999987490999866
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEECCCCCC-CCEEEEECCCCCCCEEECCC------------CCCCCCCCCCCCCEE
Q ss_conf 32011222222222222222210000147766-42024652774332021012------------111111111221000
Q gi|254780283|r 84 VVSVDLDRHPFLVETQSGDLWHADAVVIATGS-EVKWLRLESEKKFQGFGVSA------------CATCDGFFYKNKDVI 150 (321)
Q Consensus 84 V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~-~~~~~~ipG~~~~~~~~v~~------------~~~~d~~~~~~k~v~ 150 (321)
..+.+ ++.+.- .-.+|++++|||+ .|+.+++||.+....+.... .+..+....++|+|+
T Consensus 195 ~vG~~-------it~~~L-~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vv 266 (457)
T COG0493 195 RVGRD-------ITLEEL-LKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVV 266 (457)
T ss_pred EECCC-------CCHHHH-HHHHCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE
T ss_conf 77996-------789998-6532879993266788768988867777616879999999986035654467777898589
Q ss_pred EEECCCCCCCCEEEEECCC-CCCCCCCCCCC---CC-----CCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 0102556543101210133-32223443433---22-----111121122355443322223112114864333444443
Q gi|254780283|r 151 VVGGGNTAAEEALHLAKIA-RRVTIVHRRSS---LR-----SEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSV 221 (321)
Q Consensus 151 ViGgG~~g~e~A~~L~~~~-~~Vtli~r~~~---l~-----~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~ 221 (321)
|||+|++++|++....++| ++|+.+.+... .. +.....+. ..+.++++++.....++.++..........
T Consensus 267 VIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~ 345 (457)
T COG0493 267 VIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRS-AGEEGVERLPFVQPKAFIGNEGGRVTGVKF 345 (457)
T ss_pred EECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHH-HHHCCCCCCCCCCCCEEEECCCCEEEECCC
T ss_conf 9899888899988887417539999235566566785444106788776-775477543156763586658980840112
Q ss_pred CC-----------EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH---HCCCCEECCCCEEEECCCCCCCCCCEEEECCC
Q ss_conf 33-----------14203210000011222211123223565677---42561806997990088855478982897012
Q gi|254780283|r 222 SG-----------VRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF---RHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV 287 (321)
Q Consensus 222 ~~-----------v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~---~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv 287 (321)
.. ........|+.+.+++|.|+.++|+.++.... ...+.++..|.+.+.....+||.|++||+||+
T Consensus 346 ~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~ 425 (457)
T COG0493 346 GRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDA 425 (457)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEECCEE
T ss_conf 21244666555344577322685587545668866613667543211001235376785510322212468763657544
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 688445678999979999999999997
Q gi|254780283|r 288 ADERYRQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 288 ~~~~~~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
..+ ..++++|+.+|+.||..|++|+-
T Consensus 426 ~~g-~~~vv~ai~eGr~aak~i~~~~l 451 (457)
T COG0493 426 VRG-AALVVWAIAEGREAAKAIDKELL 451 (457)
T ss_pred ECC-HHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 236-13414076403299987569988
No 66
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=100.00 E-value=2.8e-32 Score=207.06 Aligned_cols=176 Identities=24% Similarity=0.350 Sum_probs=137.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEE-------------------EECC---CCCCC---CCCCC
Q ss_conf 751999989777999999999869959999678-8775687-------------------5010---07877---47777
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLM-------------------ITES---IENYP---GFATS 58 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~-------------------~~~~---i~n~~---g~~~~ 58 (321)
.++|+||||||+||+||..|.+.|+++++||++ +.||.=. .++. .-+|| .+|..
T Consensus 1 ~KrVAIIGAG~SGL~a~K~lle~G~~~~~FE~~~~iGG~W~~~~~~~~~~~~~y~sl~~Ntsk~~~~fSDfP~P~~~p~f 80 (532)
T pfam00743 1 AKKVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSSKEMSCFSDFPFPEDYPNF 80 (532)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCHHHCCCCCCCCCCCCCC
T ss_conf 98799989729999999999877998299977999735066888878886764897068589005138999899878899
Q ss_pred CCHHHHHHHHHHHHHHCCCC--CCC-EEEEECCCC-----CCCCCCCCC-CCC--CCCCCEECCCCCC--CCEEE--EEC
Q ss_conf 89789998664323200232--221-133201122-----222222222-222--2210000147766--42024--652
Q gi|254780283|r 59 IRGDWLMEQMRQQAENFGTK--IIQ-DLVVSVDLD-----RHPFLVETQ-SGD--LWHADAVVIATGS--EVKWL--RLE 123 (321)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~v~--~~~-~~V~~i~~~-----~~~~~v~~~-~g~--~~~a~~lIiAtG~--~~~~~--~ip 123 (321)
.+..++.++++.++++|++. +.. .+|++|... .+.|.|.++ +|+ +..+|+|++|||- .|+.| ++|
T Consensus 81 ~~~~~v~~YL~~YA~hF~L~~~Irf~t~V~~V~~~~d~~~~g~W~V~~~~~g~~~~~~fD~ViVctG~~~~P~iP~~~~p 160 (532)
T pfam00743 81 MHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFSTSGQWEVVTEHEGKQESAVFDAVMVCTGHHTNPHLPLESFP 160 (532)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEECCCEEEEEEECCCCCCCCEEEEEEEECCEEEEEEEEEEEEECCCCCCCCCCCCCCC
T ss_conf 89899999999999980996737657789999976676668618999985890889997799994667786876777789
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 774332021012111111111221000010255654310121013332223443433
Q gi|254780283|r 124 SEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180 (321)
Q Consensus 124 G~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~ 180 (321)
|.+.|.|+-+|...+.+...++||+|+|||+|+||+|+|.+|++.+++|++.+|+..
T Consensus 161 G~e~F~G~iiHS~~Yk~~~~f~GKrVlVVG~GnSg~DIA~els~~a~~V~ls~R~g~ 217 (532)
T pfam00743 161 GINKFKGQYFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGS 217 (532)
T ss_pred CHHCCCCEEEEHHHCCCHHHCCCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCC
T ss_conf 611179679874427986885997499978889841059999852786899970685
No 67
>KOG0399 consensus
Probab=99.98 E-value=4e-32 Score=206.13 Aligned_cols=287 Identities=23% Similarity=0.223 Sum_probs=180.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 75199998977799999999986995999967887-75687501007877477778978999866432320023222113
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL-GGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDL 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~-GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 83 (321)
-++|+|||+|||||.||-.|-|.|+.|+++|+.+. ||-++ . .+|.+... ..++++-.+.+..-|++|+++.
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~--y---gipnmkld---k~vv~rrv~ll~~egi~f~tn~ 1856 (2142)
T KOG0399 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM--Y---GIPNMKLD---KFVVQRRVDLLEQEGIRFVTNT 1856 (2142)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEE--E---CCCCCCHH---HHHHHHHHHHHHHHCCEEEEEC
T ss_conf 84799974684146689998644767999971577674566--1---68752132---7999999999886185488503
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEEECCCCCC-------------CC--CCCCCCC
Q ss_conf 320112222222222222222100001477664-2024652774332021012111-------------11--1111221
Q gi|254780283|r 84 VVSVDLDRHPFLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGFGVSACAT-------------CD--GFFYKNK 147 (321)
Q Consensus 84 V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~v~~~~~-------------~d--~~~~~~k 147 (321)
-++-+ +.. |+-.-+.|++|+|+|+. ||.+||||.+. +++++... .| ....+||
T Consensus 1857 eigk~-------vs~-d~l~~~~daiv~a~gst~prdlpv~grd~---kgv~fame~l~~ntk~lld~~~d~~~~~~~gk 1925 (2142)
T KOG0399 1857 EIGKH-------VSL-DELKKENDAIVLATGSTTPRDLPVPGRDL---KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGK 1925 (2142)
T ss_pred CCCCC-------CCH-HHHHHCCCEEEEEECCCCCCCCCCCCCCC---CCCHHHHHHHHHHHHHHHCCCCCCCEECCCCC
T ss_conf 22565-------567-88753057599982788776788898533---43087999998757765044344532146797
Q ss_pred CEEEEECCCCCCCCEEEEECCCC-CCCCCCC--------CCCCCCCCCCC--------CCCCCCCCCCCCCCCCE-EECC
Q ss_conf 00001025565431012101333-2223443--------43322111121--------12235544332222311-2114
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIAR-RVTIVHR--------RSSLRSEKILQ--------EKLFLQSNIDFLFDTEV-VDVI 209 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~~-~Vtli~r--------~~~l~~~~~~~--------~~~~~~~~i~~~~~~~v-~~i~ 209 (321)
+|+|||||++|.||-..-.|.|+ .|.-++- .+.-.++++.. .++..+.+-+....+.. ++++
T Consensus 1926 kvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~ 2005 (2142)
T KOG0399 1926 KVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFI 2005 (2142)
T ss_pred EEEEECCCCCCCCCCCCCHHHCCCEECCEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCCCCEEEEEEEEEE
T ss_conf 69998788766543142022032301022535889866688998866855788505558899870899610364540132
Q ss_pred CCCCCCCCCCCCCCEEEC---------CCCCCCCCCCCCCCCCCCCCCCCC-HHHHHC-CCCEECCCCEEEECCCCCCCC
Q ss_conf 864333444443331420---------321000001122221112322356-567742-561806997990088855478
Q gi|254780283|r 210 GSIPEPPLFPSVSGVRLH---------NKKEGNFFERNVDGIFIAIGYKPN-TKIFRH-QLKMTNTNYIWTMPDSTATSI 278 (321)
Q Consensus 210 g~~~~~~~~~~~~~v~~~---------~~~~g~~~~i~~D~vi~a~G~~pn-~~~~~~-~~~~~~~g~i~~~~~~~~Ts~ 278 (321)
++............++++ ....++++.+++|.||+++||... ....++ .++.+.++.+.+-+..+.|++
T Consensus 2006 ~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v 2085 (2142)
T KOG0399 2006 GDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDV 2085 (2142)
T ss_pred CCCCCCEEEEEEEEEEEEECCCCCEEEEECCCCCEEEECCEEEEECCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 16887464478998888766877368987278510344245243202568413335332755476545367776533345
Q ss_pred CCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 982897012688445678999979999999999
Q gi|254780283|r 279 PGIFAAGDVADERYRQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 279 p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~ 311 (321)
++|||+|||.. ++.++++|+.+|..||..+++
T Consensus 2086 ~~vfaagdcrr-gqslvvwai~egrq~a~~vd~ 2117 (2142)
T KOG0399 2086 AKVFAAGDCRR-GQSLVVWAIQEGRQAARQVDE 2117 (2142)
T ss_pred CCEEECCCCCC-CCEEEEEEEHHHHHHHHHHHH
T ss_conf 52464055467-865799980332688999999
No 68
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.95 E-value=2.5e-28 Score=183.95 Aligned_cols=180 Identities=24% Similarity=0.304 Sum_probs=136.5
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCC-EEEEECC-CCCCE----EE------EECCCCCCCCCCCC-----CCHHH
Q ss_conf 987675199998977799999999986995-9999678-87756----87------50100787747777-----89789
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLK-PVIIAGS-DLGGQ----LM------ITESIENYPGFATS-----IRGDW 63 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~-v~iie~~-~~GG~----l~------~~~~i~n~~g~~~~-----~~~~~ 63 (321)
|....+||+|||||++||.+|..|.++|.. ++|+|+. +.||. .+ ..+....||++|-. ....+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 76675548998987889999999997599867999705766786555668716767974011588888776556777643
Q ss_pred HHHHHHHHHHHCC----CCCCCE-EEEECCCCCCCCCCCCCCCCCC--CCCEECCCCCC--CCEEEEECCCCCCCEEECC
Q ss_conf 9986643232002----322211-3320112222222222222222--10000147766--4202465277433202101
Q gi|254780283|r 64 LMEQMRQQAENFG----TKIIQD-LVVSVDLDRHPFLVETQSGDLW--HADAVVIATGS--EVKWLRLESEKKFQGFGVS 134 (321)
Q Consensus 64 l~~~~~~~~~~~~----v~~~~~-~V~~i~~~~~~~~v~~~~g~~~--~a~~lIiAtG~--~~~~~~ipG~~~~~~~~v~ 134 (321)
+.+++..++++|+ +.+... ++...+.+.+.|+|.++++... ++|.||+|||- .|+.|+|+|.++|.+.-+|
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~H 163 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH 163 (443)
T ss_pred HHHHHHHHHHHHCCEEEEECCCCEEEEEEECCCCEEEEEECCCCCCEEECCEEEECCCCCCCCCCCCCCCCCCCCCCEEC
T ss_conf 89999999998356045021452568863058870699964887522512679983057898978887886666863444
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 2111111111221000010255654310121013332223443433
Q gi|254780283|r 135 ACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180 (321)
Q Consensus 135 ~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~ 180 (321)
...+.+...++||+|+|||+|+||+++|..|.+.+++||++.|++.
T Consensus 164 S~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 164 SADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred CCCCCCHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 1016961342788799989870399999999730671789851797
No 69
>KOG1399 consensus
Probab=99.94 E-value=9.4e-27 Score=174.76 Aligned_cols=174 Identities=26% Similarity=0.344 Sum_probs=135.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEE-------------------CCCCCCCCCC--CC---
Q ss_conf 67519999897779999999998699599996788-77568750-------------------1007877477--77---
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMIT-------------------ESIENYPGFA--TS--- 58 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~-------------------~~i~n~~g~~--~~--- 58 (321)
...+|+|||||||||.+|..|.+.|++++++|+.+ +||.-... +..-.|+.|| +.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~ 84 (448)
T KOG1399 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR 84 (448)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECCCCCCCCCCHHHHHHCCCCHHHHCCCCCCCCCCCCC
T ss_conf 77854897856688899999987799836997058745458605765655432434210468844425799897545711
Q ss_pred --CCHHHHHHHHHHHHHHCCCC--CCCE-EEEECCCCC-CCCCCCCCCC----CCCCCCEECCCCCCC--CEEEEECC--
Q ss_conf --89789998664323200232--2211-332011222-2222222222----222100001477664--20246527--
Q gi|254780283|r 59 --IRGDWLMEQMRQQAENFGTK--IIQD-LVVSVDLDR-HPFLVETQSG----DLWHADAVVIATGSE--VKWLRLES-- 124 (321)
Q Consensus 59 --~~~~~l~~~~~~~~~~~~v~--~~~~-~V~~i~~~~-~~~~v~~~~g----~~~~a~~lIiAtG~~--~~~~~ipG-- 124 (321)
.+..++.++++..+++|++. +..+ +|..++... +.|.|.+.++ +..-+|.|++|||-. |+.|.+||
T Consensus 85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g~~ 164 (448)
T KOG1399 85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPG 164 (448)
T ss_pred CCCCHHHHHHHHHHHHHHCCHHHHEEECCCEEEEEECCCCCEEEEEECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCC
T ss_conf 17888899999999987358346267346579984056774168981488640589963899955676889887678886
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCC
Q ss_conf 74332021012111111111221000010255654310121013332223443
Q gi|254780283|r 125 EKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHR 177 (321)
Q Consensus 125 ~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r 177 (321)
.+.|.|+-+|.+.+..+..+++|+|+|||.|+||+|.+..+++.+++|++..+
T Consensus 165 ~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~ 217 (448)
T KOG1399 165 IESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV 217 (448)
T ss_pred HHHCCCCCEEHHHCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEE
T ss_conf 40068721140321576544686699988781489999999986067614643
No 70
>KOG2495 consensus
Probab=99.93 E-value=9.5e-26 Score=168.91 Aligned_cols=290 Identities=19% Similarity=0.233 Sum_probs=180.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCC-CHHHHHHHHHHHHHHC--CCCC
Q ss_conf 767519999897779999999998699599996788775687501007877477778-9789998664323200--2322
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSI-RGDWLMEQMRQQAENF--GTKI 79 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~-~~~~l~~~~~~~~~~~--~v~~ 79 (321)
.++++|+|+|.|.+|.|....+-....++++++-.++ -+ .++.+ |.-+.++ .-..+++-.+.-..+- ++.|
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny--Fl-FTPLL---pS~~vGTve~rSIvEPIr~i~r~k~~~~~y 126 (491)
T KOG2495 53 GKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY--FL-FTPLL---PSTTVGTVELRSIVEPIRAIARKKNGEVKY 126 (491)
T ss_pred CCCCEEEEECCCHHHHHHHHHCCCCCCCEEEECCCCC--EE-EEECC---CCCCCCCEEEHHHHHHHHHHHHCCCCCCEE
T ss_conf 8875399985752889998752664342499646300--68-73146---776446243103455689886225787169
Q ss_pred CCEEEEECCCCCCCCCCC--CCCC----CCCCCCEECCCCCCCCEEEEECCCCCCC--EEECCCCCCC--------CCCC
Q ss_conf 211332011222222222--2222----2221000014776642024652774332--0210121111--------1111
Q gi|254780283|r 80 IQDLVVSVDLDRHPFLVE--TQSG----DLWHADAVVIATGSEVKWLRLESEKKFQ--GFGVSACATC--------DGFF 143 (321)
Q Consensus 80 ~~~~V~~i~~~~~~~~v~--~~~g----~~~~a~~lIiAtG~~~~~~~ipG~~~~~--~~~v~~~~~~--------d~~~ 143 (321)
+..+-..+|.+.+...+. +.++ -.+.||+||+|+|+.++.++|||..+.. .+-+++...+ +...
T Consensus 127 ~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~ 206 (491)
T KOG2495 127 LEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAE 206 (491)
T ss_pred EECCCEEECCCCCEEEEEEECCCCCCCEEEECCCEEEEECCCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86260760666667987641268886126602668999626777778997511010466643679999999998888752
Q ss_pred CC---------CCCEEEEECCCCCCCCEEEEECCC--------------CCCCCCCCCCCCCC--CCC---CCCCCCCCC
Q ss_conf 12---------210000102556543101210133--------------32223443433221--111---211223554
Q gi|254780283|r 144 YK---------NKDVIVVGGGNTAAEEALHLAKIA--------------RRVTIVHRRSSLRS--EKI---LQEKLFLQS 195 (321)
Q Consensus 144 ~~---------~k~v~ViGgG~~g~e~A~~L~~~~--------------~~Vtli~r~~~l~~--~~~---~~~~~~~~~ 195 (321)
.. =-+++|||||++|+|+|.+|+.+- -+|||++-.|.+.. ++. ..+..+.+.
T Consensus 207 ~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~~ 286 (491)
T KOG2495 207 LPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVRD 286 (491)
T ss_pred CCCCCHHHHHHEEEEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 58998577540578999888876224567778778788998604132034898421014577888999999999986431
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCH---HHHHCCCCEECCCCEEEECC
Q ss_conf 433222231121148643334444433314203210000011222211123223565---67742561806997990088
Q gi|254780283|r 196 NIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNT---KIFRHQLKMTNTNYIWTMPD 272 (321)
Q Consensus 196 ~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~---~~~~~~~~~~~~g~i~~~~~ 272 (321)
+|++..++.++++..+.. ... ..+|+..+++.-.++|++|..|.. ++-++..+...++ +.+|+
T Consensus 287 ~I~~~~~t~Vk~V~~~~I-----------~~~-~~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~--L~vDE 352 (491)
T KOG2495 287 GIDLDTGTMVKKVTEKTI-----------HAK-TKDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRG--LAVDE 352 (491)
T ss_pred CCEEECCCEEEEECCCEE-----------EEE-CCCCCEEEECCEEEEECCCCCCCHHHHHHHHCCCCCCCEE--EEEEC
T ss_conf 603433607996067189-----------997-2788355303247995478877602466752488667324--55201
Q ss_pred CCC-CCCCCEEEECCCCCC-CH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf 855-478982897012688-44-56789999799999999999
Q gi|254780283|r 273 STA-TSIPGIFAAGDVADE-RY-RQAITAAAMGCMAALEVEHY 312 (321)
Q Consensus 273 ~~~-Ts~p~Iya~GDv~~~-~~-~~~~~A~~~G~~Aa~~i~~y 312 (321)
++| ..+++|||+|||+.. .+ .++-.|.-+|+..|.+..+-
T Consensus 353 ~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m 395 (491)
T KOG2495 353 WLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKM 395 (491)
T ss_pred EEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 2440676762772132246567607789888889999999998
No 71
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=99.93 E-value=1.6e-25 Score=167.57 Aligned_cols=294 Identities=18% Similarity=0.213 Sum_probs=189.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCEEEEEC-CCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCC
Q ss_conf 67519999897779999999998699599996-788775687501-00787747777897899986643232002-3222
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIA-GSDLGGQLMITE-SIENYPGFATSIRGDWLMEQMRQQAENFG-TKII 80 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie-~~~~GG~l~~~~-~i~n~~g~~~~~~~~~l~~~~~~~~~~~~-v~~~ 80 (321)
.++||+|||+|||||+||..+++.|.+|+|+| ..+.||.|.... .- -++.|+.+.++.-..++...+ +.++
T Consensus 175 ~HCDVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~~~g~~------IDG~PA~~W~~~t~aeL~a~~~v~~L 248 (1026)
T TIGR01372 175 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLSEAGET------IDGKPAADWAAATVAELEALPEVTLL 248 (1026)
T ss_pred EECCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCC------CCCCCHHHHHHHHHHHHHCCCCEEEC
T ss_conf 320478878896799999999647988999706765777556778760------17801899999999997418981674
Q ss_pred CE-EEEECCCCCCCCCC------CC---CCCC------CCCCCEECCCCCCCCEEEEECCCCCCCEEECCCCC--CCCCC
Q ss_conf 11-33201122222222------22---2222------22100001477664202465277433202101211--11111
Q gi|254780283|r 81 QD-LVVSVDLDRHPFLV------ET---QSGD------LWHADAVVIATGSEVKWLRLESEKKFQGFGVSACA--TCDGF 142 (321)
Q Consensus 81 ~~-~V~~i~~~~~~~~v------~~---~~g~------~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~--~~d~~ 142 (321)
+. ++.+....+ .+.+ .+ ++|. ++++|+||||||+.+|.+.++|-+.+..- +-... |..-|
T Consensus 249 ~RTT~~G~YD~N-~~g~~ER~~DHL~~P~~g~~ReRlWrvRAkrvVLA~GA~ERPlVF~nND~PGvM-lA~A~~~YlnRy 326 (1026)
T TIGR01372 249 PRTTAFGYYDHN-TVGALERVTDHLDAPAKGVPRERLWRVRAKRVVLATGALERPLVFANNDRPGVM-LAGAARTYLNRY 326 (1026)
T ss_pred CCCCEEEEECCC-EEEEEEEHHCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCCCHHH-HHHHHHHHHHHH
T ss_conf 354055451477-478762011366778874853305777253456605764477868831953233-367999988875
Q ss_pred C-CCCCCEEEEECCCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCC-CCCCCCC
Q ss_conf 1-122100001025565431012101333222-344343322111121122355443322223112114864-3334444
Q gi|254780283|r 143 F-YKNKDVIVVGGGNTAAEEALHLAKIARRVT-IVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSI-PEPPLFP 219 (321)
Q Consensus 143 ~-~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vt-li~r~~~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~-~~~~~~~ 219 (321)
- ..||+|+|.=.-++|.++|..|.+-|..|. |+--|++. .+....++ .+.+++++..+.|....|.. ......
T Consensus 327 gV~pG~r~v~~TnNDSAy~~A~dL~~AG~~vvAi~D~R~~~--~p~~~~~A-r~~g~~v~~G~~V~~t~G~kdrv~~~~- 402 (1026)
T TIGR01372 327 GVAPGKRIVVATNNDSAYRAAADLAEAGLAVVAIVDARADV--SPELVAEA-REAGIEVIKGHAVAATEGGKDRVSGVK- 402 (1026)
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCC--CHHHHHHH-HHCCCEEEECCCEEECCCCCCCEEEEE-
T ss_conf 00548705898217358999999996489506999617887--52479999-875985986450221257721010468-
Q ss_pred CCCCEEECC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CC--CEEC--CCCEEEECCCCCCCCCCEEEECCCCCCCHH
Q ss_conf 433314203-21000001122221112322356567742-56--1806--997990088855478982897012688445
Q gi|254780283|r 220 SVSGVRLHN-KKEGNFFERNVDGIFIAIGYKPNTKIFRH-QL--KMTN--TNYIWTMPDSTATSIPGIFAAGDVADERYR 293 (321)
Q Consensus 220 ~~~~v~~~~-~~~g~~~~i~~D~vi~a~G~~pn~~~~~~-~~--~~~~--~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~ 293 (321)
+..+.+.. ...|..+.++||+++++=|+.|...|+.+ ++ .+++ .=|++ ...+++=..+++-.+|-+++.-.
T Consensus 403 -V~r~~~~~~~~~g~~~~~~aD~LlvSGGw~P~vHL~Sq~~GK~~W~~~~~AFlP-~~PtqkW~~~~~~~AGA~~G~~g- 479 (1026)
T TIGR01372 403 -VARVDLGTDRESGAEERLDADALLVSGGWSPVVHLASQAGGKLAWDEARAAFLP-GTPTQKWAVQGCILAGAVNGLFG- 479 (1026)
T ss_pred -EEEECCHHCCCCCCCCEEEEEEEEECCCCCCHHHHHHCCCCCCCCCHHHHCCCC-CCCCCCCCCCCEEEEEEEECCHH-
T ss_conf -886244001135785247853898727766212220005883430133431586-67554436677278530001010-
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 67899997999999999999
Q gi|254780283|r 294 QAITAAAMGCMAALEVEHYL 313 (321)
Q Consensus 294 ~~~~A~~~G~~Aa~~i~~yl 313 (321)
+..+..||..++..+.+-+
T Consensus 480 -l~a~l~dG~~~G~~aA~~~ 498 (1026)
T TIGR01372 480 -LAAALADGAAAGAAAARAA 498 (1026)
T ss_pred -HHHHHHHHHHHHHHHHHHC
T ss_conf -7999999999999999861
No 72
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.93 E-value=2.1e-26 Score=172.70 Aligned_cols=287 Identities=24% Similarity=0.219 Sum_probs=174.3
Q ss_pred EEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-EE
Q ss_conf 999989777999999999869--959999678877568750100787747777897899986643232002322211-33
Q gi|254780283|r 8 ILIIGSGPAGYTAAIYAARAM--LKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-LV 84 (321)
Q Consensus 8 VvIIG~GpAGl~aA~~l~r~g--~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V 84 (321)
++|||+|+||+++|..+.+.. .+++++..+..-. +....+..+.+.. ......+..... ...+.++++..+ +|
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~i~~~~~~~v 76 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS--YYRCPLSLYVGGG-IASLEDLRYPPR-FNRATGIDVRTGTEV 76 (415)
T ss_pred CEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCC--CCCCCCCEEECCC-CCCCHHHCCCCC-HHHCCCEEECCCCEE
T ss_conf 989825599999999998507778859995235445--5557623053344-234002115642-343167286036468
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCC-CCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEE
Q ss_conf 201122222222222222221000014776642024652774-3320210121111111112210000102556543101
Q gi|254780283|r 85 VSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEK-KFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEAL 163 (321)
Q Consensus 85 ~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~-~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~ 163 (321)
+.++...+ .+.+.++ ++.||+|++|||+.|+.++-..+. .+..+...............++++|+|+|+.|+|+|.
T Consensus 77 ~~id~~~~--~v~~~~g-~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle~A~ 153 (415)
T COG0446 77 TSIDPENK--VVLLDDG-EIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAE 153 (415)
T ss_pred EECCCHHC--EEEECCC-CCCCCCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHH
T ss_conf 72261235--6991587-07265258814765566775422244324689999876535667773999893499999999
Q ss_pred EEECCCCCCCCCCCCCCCCCC---CCC---CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 210133322234434332211---112---11223554433222231121148643334444433314203210000011
Q gi|254780283|r 164 HLAKIARRVTIVHRRSSLRSE---KIL---QEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFER 237 (321)
Q Consensus 164 ~L~~~~~~Vtli~r~~~l~~~---~~~---~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i 237 (321)
.+++.|.+|++++..+++... +.. ..+.++..+|+++++..+.++........... ........+
T Consensus 154 ~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~~~~~---------~~~~~~~~~ 224 (415)
T COG0446 154 AAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVER---------VVGIDGEEI 224 (415)
T ss_pred HHHHCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCCEEEEE---------EEEEEEEEE
T ss_conf 99877993899975664233112188999999999972948982652699992586215544---------566530352
Q ss_pred CCCCCCCCCCCCCCHHHHHCCC--CEECCCCEEEECCCCCCC-CCCEEEECCCCCCCH---------HHHHHHHHHHHHH
Q ss_conf 2222111232235656774256--180699799008885547-898289701268844---------5678999979999
Q gi|254780283|r 238 NVDGIFIAIGYKPNTKIFRHQL--KMTNTNYIWTMPDSTATS-IPGIFAAGDVADERY---------RQAITAAAMGCMA 305 (321)
Q Consensus 238 ~~D~vi~a~G~~pn~~~~~~~~--~~~~~g~i~~~~~~~~Ts-~p~Iya~GDv~~~~~---------~~~~~A~~~G~~A 305 (321)
++|.+++++|.+||..+....+ .....|++. +|+.++|| .++|||+|||+..+. ..+..|...+.+|
T Consensus 225 ~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~-v~~~~~~~~~~~vya~GD~~~~~~~~~~~~~~~~~~~~a~~~~~i~ 303 (415)
T COG0446 225 KADLVIIGPGERPNVVLANDALPGLALAGGAVL-VDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIA 303 (415)
T ss_pred CCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEE-EECCCCEECCCCEEEECCCEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 233698789757761015465444013787299-9824542166888980332002443222012310124455430024
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780283|r 306 ALEVEH 311 (321)
Q Consensus 306 a~~i~~ 311 (321)
+.++..
T Consensus 304 ~~~~~~ 309 (415)
T COG0446 304 AENIAG 309 (415)
T ss_pred HHHHCC
T ss_conf 554034
No 73
>TIGR01423 trypano_reduc trypanothione-disulfide reductase; InterPro: IPR001864 Trypanothione reductase from Leishmania, and African and South American trypanosomes, has been purified and characterised . The enzymes have similar physical, mechanistic and kinetic properties, and are members of the flavoprotein disulphide oxidoreductase family. Trypanothione is the parasite analogue of glutathione, hence this enzyme is equivalent to glutathione reductase. It catalyses the reaction: NADPH + trypanothione = NADP(+) + reduced trypanothione Trypanothione reductase shows pronounced specificty for its disulphide substrates, trypanothione disulphide or glutathionylspermidine disulphide. The 3D structure of the enzyme has been determined and its mode of substrate binding revealed in detail , offering hope for the design of drugs to combat Chagas disease. The structure belongs to the alpha+beta class, i.e. with mainly anti-parallel beta-sheets separated by alpha and beta regions. It contains an alpha-beta sandwich characteristic of FAD/NAD-linked reductases and a C-terminal dimerisation domain.; GO: 0015036 disulfide oxidoreductase activity, 0006118 electron transport.
Probab=99.89 E-value=8.2e-24 Score=157.60 Aligned_cols=283 Identities=22% Similarity=0.294 Sum_probs=181.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECC---------CCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 76751999989777999999999869-959999678---------87756875010078774777789789998664323
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAM-LKPVIIAGS---------DLGGQLMITESIENYPGFATSIRGDWLMEQMRQQA 72 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g-~~v~iie~~---------~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~ 72 (321)
++-||.+|||+|.+||.|.+.++..- .++.++|-. .+||.|.+..++.. ..-++|.++++.+++.+
T Consensus 1 s~a~dlv~iGaGsGGleaGWnaa~l~kkrvav~d~q~~hGPP~~aalGGtCvnvGCvPk----klmvtGa~ymd~~resa 76 (486)
T TIGR01423 1 SKAYDLVVIGAGSGGLEAGWNAASLYKKRVAVVDLQKVHGPPFYAALGGTCVNVGCVPK----KLMVTGAQYMDTLRESA 76 (486)
T ss_pred CCEEEEEEEECCCCCCCCCHHHHHHHCCEEEEEEEECCCCCCCEECCCCCEEEECCCCC----CEEEECHHHHHHHHHHC
T ss_conf 94057899824777410010123321031689984224799300010872687234363----00110057888887623
Q ss_pred --------------------------------------HHCCCCCCCE-------EEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------------------------------------2002322211-------3320112222222222222222100
Q gi|254780283|r 73 --------------------------------------ENFGTKIIQD-------LVVSVDLDRHPFLVETQSGDLWHAD 107 (321)
Q Consensus 73 --------------------------------------~~~~v~~~~~-------~V~~i~~~~~~~~v~~~~g~~~~a~ 107 (321)
+.-|++|..+ .+..+....++.. .-.+++.++
T Consensus 77 GfGWe~d~~~~~~nWk~liaakn~av~~in~sye~mf~dteGl~f~~G~Gal~~~~~v~vre~adP~s---~v~e~l~~e 153 (486)
T TIGR01423 77 GFGWELDAESVKANWKALIAAKNKAVLDINDSYEDMFKDTEGLEFFLGFGALEDKNVVLVRESADPKS---KVKERLDAE 153 (486)
T ss_pred CCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCEECCCCEEEEECCCCCHH---HHHHHHCCC
T ss_conf 76400032454466789998766777767655777741024402220112001475799962788525---786510433
Q ss_pred EECCCCCCCCEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEEC---CCCCCCCCCCCCCC-CC
Q ss_conf 001477664202465277433202101211111111122100001025565431012101---33322234434332-21
Q gi|254780283|r 108 AVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAK---IARRVTIVHRRSSL-RS 183 (321)
Q Consensus 108 ~lIiAtG~~~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~---~~~~Vtli~r~~~l-~~ 183 (321)
++|+|||+.|..+.|||.+.|..-+- .-+.+ ..+|+++.+|||.+.+|+|..++. .|-+|+|.+|.+.+ |.
T Consensus 154 ~i~~atGsWPq~l~i~G~~~Ci~sne--afyl~---e~P~r~l~vGGG~is~efaGifnayk~~GG~v~l~yr~~~ilrG 228 (486)
T TIGR01423 154 YILLATGSWPQMLKIEGIELCISSNE--AFYLE---EAPKRVLTVGGGYISVEFAGIFNAYKAVGGKVDLAYRNDMILRG 228 (486)
T ss_pred EEEEEECCCCCCCCCCCCCEEEECCC--CEECC---CCCCEEEEECCCEEEEEEEEHHHHHCCCCCEEEEEECCCEEEEC
T ss_conf 59997167732003566420330232--01004---78854898647479986200123231579758998738703303
Q ss_pred -CCCCCCCC---CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH---
Q ss_conf -11121122---35544332222311211486433344444333142032100000112222111232235656774---
Q gi|254780283|r 184 -EKILQEKL---FLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFR--- 256 (321)
Q Consensus 184 -~~~~~~~~---~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~--- 256 (321)
+..+.+++ +...+|++..+..+.++..+.+.. ..+.++ ...+++.|.|.+++|+.|.+..++
T Consensus 229 fd~~lr~~lt~ql~anGi~~~t~enP~k~~~n~dG~------~hv~fe-----sG~~~d~dvvm~aiGr~Pr~~~lql~~ 297 (486)
T TIGR01423 229 FDSELRKELTKQLVANGIDVRTNENPAKVEKNADGS------KHVVFE-----SGKELDVDVVMLAIGRLPRSQTLQLDK 297 (486)
T ss_pred CCHHHHHHHHHHHHHCCCEEEECCCCHHEEECCCCC------EEEEEC-----CCCCCCEEEEEEEECCCCCCCEEEEEC
T ss_conf 227899999988762661366447700110078984------468862-----677334017887623677643134000
Q ss_pred CCCCEECCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 256180699799008885547898289701268844567899997999999999
Q gi|254780283|r 257 HQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 257 ~~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
.++++.++|.+. +|++-+||+|+|||+||+++.-+ +.+.|+.+|+.....++
T Consensus 298 ~Gv~~~~~Gai~-vd~~s~tnv~niyaiGdvt~r~m-ltPvaineGa~~vdt~f 349 (486)
T TIGR01423 298 VGVELADKGAIK-VDEYSKTNVDNIYAIGDVTDRVM-LTPVAINEGAAVVDTVF 349 (486)
T ss_pred CCEEEECCCCEE-ECCHHCCCCCCEEEECCCCCCEE-EEEEEECCCCHHHHHHH
T ss_conf 030111376444-30000046331355202136057-62232015640101322
No 74
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.81 E-value=1.9e-19 Score=132.07 Aligned_cols=92 Identities=21% Similarity=0.287 Sum_probs=71.2
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCHH---HHH-CCCCEECCCCEEEECCCC---CCCCCCEEEECCCCCCCHHHHH
Q ss_conf 142032100000112222111232235656---774-256180699799008885---5478982897012688445678
Q gi|254780283|r 224 VRLHNKKEGNFFERNVDGIFIAIGYKPNTK---IFR-HQLKMTNTNYIWTMPDST---ATSIPGIFAAGDVADERYRQAI 296 (321)
Q Consensus 224 v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~---~~~-~~~~~~~~g~i~~~~~~~---~Ts~p~Iya~GDv~~~~~~~~~ 296 (321)
++.+|+..|+..++++|.|++++|..|..+ +.+ -++..+++||+......+ +|+.+|||.+|-+.+ | +-+.
T Consensus 450 V~~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg-P-kdI~ 527 (622)
T COG1148 450 VRVEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG-P-KDIA 527 (622)
T ss_pred EEEEECCCCCEECCCCCEEEEEECCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC-C-CCHH
T ss_conf 9986034673111233379995044457656888875486517877603478776645556785798100369-8-4277
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999979999999999997422
Q gi|254780283|r 297 TAAAMGCMAALEVEHYLSIHQ 317 (321)
Q Consensus 297 ~A~~~G~~Aa~~i~~yl~~~~ 317 (321)
.++.+|..||..+..+|+.-.
T Consensus 528 ~siaqa~aAA~kA~~~l~~g~ 548 (622)
T COG1148 528 DSIAQAKAAAAKAAQLLGRGE 548 (622)
T ss_pred HHHHHHHHHHHHHHHHHHCCC
T ss_conf 888776788998999863385
No 75
>KOG1800 consensus
Probab=99.76 E-value=1.6e-17 Score=120.84 Aligned_cols=282 Identities=21% Similarity=0.235 Sum_probs=157.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 675199998977799999999986--99599996788-775687501007877477778978999866432320023222
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARA--MLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKII 80 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~--g~~v~iie~~~-~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~ 80 (321)
....|.|||+||||+++|..|.+. +.+|.|+|+.. +.| |..+.- -|.+|+. ....+.|.+.+++-...|.
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFG-LvRyGV---APDHpEv---KnvintFt~~aE~~rfsf~ 91 (468)
T KOG1800 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFG-LVRYGV---APDHPEV---KNVINTFTKTAEHERFSFF 91 (468)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCC-EEEECC---CCCCCCH---HHHHHHHHHHHHCCCEEEE
T ss_conf 89659998888368899999972589970675415776653-366334---7898210---1478888887513544898
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCC-CCEEEEECCCCCCCEEE----------CCCCCCCCCCCCCCCCE
Q ss_conf 11332011222222222222222210000147766-42024652774332021----------01211111111122100
Q gi|254780283|r 81 QDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGS-EVKWLRLESEKKFQGFG----------VSACATCDGFFYKNKDV 149 (321)
Q Consensus 81 ~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~-~~~~~~ipG~~~~~~~~----------v~~~~~~d~~~~~~k~v 149 (321)
-+- ....+ +.+.+ -+-.|+++++|.|+ .++.++|||.+.-...+ +...... .+.+.+.+|
T Consensus 92 gNv----~vG~d---vsl~e-L~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~l-e~dls~~~v 162 (468)
T KOG1800 92 GNV----KVGRD---VSLKE-LTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNL-EPDLSGRKV 162 (468)
T ss_pred ECC----EECCC---CCHHH-HHHCCCEEEEEECCCCCCCCCCCCCCCCCCEEHHHHHHHCCCCCCCCCC-CCCCCCCEE
T ss_conf 030----10463---10899-8621667999715888740689874345612266654110588731225-756555437
Q ss_pred EEEECCCCCCCCEEEEECC----------------------CCCCCCCCCCCCCCCC---CC------------------
Q ss_conf 0010255654310121013----------------------3322234434332211---11------------------
Q gi|254780283|r 150 IVVGGGNTAAEEALHLAKI----------------------ARRVTIVHRRSSLRSE---KI------------------ 186 (321)
Q Consensus 150 ~ViGgG~~g~e~A~~L~~~----------------------~~~Vtli~r~~~l~~~---~~------------------ 186 (321)
+|||.||+++|+|..|..- -++|+++-||..+.++ +.
T Consensus 163 vIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~ 242 (468)
T KOG1800 163 VIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVD 242 (468)
T ss_pred EEECCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEECCCCCCEEEEHHHHHHHHCCCCCCCCCCCHH
T ss_conf 99746820122245550786320023678578875530377534899841574200024898999867888654457220
Q ss_pred CCCCCCC-------CC------------------------CCC---CCCCCCEEECCCCCCCCCCCCCCCCEEE-----C
Q ss_conf 2112235-------54------------------------433---2222311211486433344444333142-----0
Q gi|254780283|r 187 LQEKLFL-------QS------------------------NID---FLFDTEVVDVIGSIPEPPLFPSVSGVRL-----H 227 (321)
Q Consensus 187 ~~~~~~~-------~~------------------------~i~---~~~~~~v~~i~g~~~~~~~~~~~~~v~~-----~ 227 (321)
+..+.++ ++ +.+ +.+...+.+|..+... +.++.+ .
T Consensus 243 ~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~------v~~~~~~~t~l~ 316 (468)
T KOG1800 243 FSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG------VSGVRFQVTILE 316 (468)
T ss_pred CCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHCCCCCC------CCCEEEEEEEEH
T ss_conf 15503775446544740678999999988643203643676414578875298876368665------354178754310
Q ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEE--------CCCCEEEECCCCCCCCCCEEEECCCCCCCHHHHH
Q ss_conf ---32100000112222111232235656774256180--------6997990088855478982897012688445678
Q gi|254780283|r 228 ---NKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMT--------NTNYIWTMPDSTATSIPGIFAAGDVADERYRQAI 296 (321)
Q Consensus 228 ---~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~--------~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~ 296 (321)
...+|+..+++|+.++.++|++... +..++..| .+|.+.. . + --|++|++|=|..+|.--+.
T Consensus 317 ~~~~~~tg~~e~~p~~l~i~sIGYks~p--v~~gipFd~~kgvv~n~~GrV~~-s---~-~~pglY~sGW~k~GP~GvIa 389 (468)
T KOG1800 317 GTQAVPTGAFETLPCGLLIRSIGYKSVP--VDSGIPFDDKKGVVPNVNGRVLV-S---G-CSPGLYASGWVKHGPTGVIA 389 (468)
T ss_pred HHCCCCCCCEEEECCCEEEEEEEECCCC--CCCCCCCCCCCCCCCCCCCEEEE-E---C-CCCCEEEEEEECCCCCCEEE
T ss_conf 1014566752762132367630000244--68998966444746687856885-2---1-47744787422248863440
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 999979999999999997
Q gi|254780283|r 297 TAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 297 ~A~~~G~~Aa~~i~~yl~ 314 (321)
++|.+.-..|..|.+.+.
T Consensus 390 ttm~dAf~v~d~I~qD~~ 407 (468)
T KOG1800 390 TTMQDAFEVADTIVQDLK 407 (468)
T ss_pred EHHHHHHHHHHHHHHHHH
T ss_conf 025668999999999998
No 76
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.76 E-value=2.2e-17 Score=120.04 Aligned_cols=41 Identities=32% Similarity=0.496 Sum_probs=37.7
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 98767519999897779999999998699599996788775
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG 41 (321)
|.+++|||+|||+|.|||+||+++++.|.+|+|++|..+++
T Consensus 4 ~~~~e~DVlVIGsG~AGL~AAi~A~~~G~~V~lv~K~~~~~ 44 (631)
T PRK07803 4 VERHEYDVVVIGAGGAGLRAVIEARERGLKVAVVCKSLFGK 44 (631)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 55310598999964999999999987699879997899998
No 77
>KOG2755 consensus
Probab=99.75 E-value=8.4e-20 Score=134.19 Aligned_cols=263 Identities=24% Similarity=0.297 Sum_probs=142.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC--CEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHH--HHH-HHHCCCCC--
Q ss_conf 19999897779999999998699--599996788775687501007877477778978999866--432-32002322--
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAML--KPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQM--RQQ-AENFGTKI-- 79 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~--~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~--~~~-~~~~~v~~-- 79 (321)
+.+|+|||.||.+||..++.... +++|+..+.. .+.+.||--. ..+.++| ++| ...++.++
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~------vksvtn~~~i------~~ylekfdv~eq~~~elg~~f~~ 68 (334)
T KOG2755 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF------VKSVTNYQKI------GQYLEKFDVKEQNCHELGPDFRR 68 (334)
T ss_pred CEEEECCCCCCCCHHHHHHHHCCCCCEEEEECCHH------HHHHHHHHHH------HHHHHHCCCCCCCHHHHCCCHHH
T ss_conf 95998576143258999975388873899964178------8877617999------98887627523416665500789
Q ss_pred -CCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEECCCC---CCCCCCCCCCCCEEEEECC
Q ss_conf -211332011222222222222222210000147766420246527743320210121---1111111122100001025
Q gi|254780283|r 80 -IQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSAC---ATCDGFFYKNKDVIVVGGG 155 (321)
Q Consensus 80 -~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v~~~---~~~d~~~~~~k~v~ViGgG 155 (321)
+.. |..++. ....+.+++|+.+.|++|.+|||+.|... .+|.+. ..-++... .-..-.+.++|.|.|+|.|
T Consensus 69 ~~~~-v~~~~s--~ehci~t~~g~~~ky~klcl~tg~kPklq-~E~~n~-~Iv~irDtDsaQllq~kl~kaK~VlilgnG 143 (334)
T KOG2755 69 FLND-VVTWDS--SEHCIHTQNGEKLKYFKLCLCTGYKPKLQ-VEGINP-KIVGIRDTDSAQLLQCKLVKAKIVLILGNG 143 (334)
T ss_pred HHHH-HHHHCC--CCCEEEECCCCEEEEEEEEEECCCCCCEE-ECCCCC-EEEEEECCCHHHHHHHHHHHCCEEEEEECC
T ss_conf 9876-632145--34458822786666889999538873013-247785-599984371789999987624369998057
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCC----C---CCCCCCCC---CC--------CCCCCCCCCCE---EECCCCC--
Q ss_conf 5654310121013332223443433221----1---11211223---55--------44332222311---2114864--
Q gi|254780283|r 156 NTAAEEALHLAKIARRVTIVHRRSSLRS----E---KILQEKLF---LQ--------SNIDFLFDTEV---VDVIGSI-- 212 (321)
Q Consensus 156 ~~g~e~A~~L~~~~~~Vtli~r~~~l~~----~---~~~~~~~~---~~--------~~i~~~~~~~v---~~i~g~~-- 212 (321)
-+++|+++++.-+ +|+|....+.+.+ + ..+-.++. .. ..++.+.+.+- ....|..
T Consensus 144 gia~El~yElk~~--nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~algpDw~ 221 (334)
T KOG2755 144 GIAMELTYELKIL--NVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGPALGPDWH 221 (334)
T ss_pred CHHHHHHHHHHCC--EEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
T ss_conf 2358888874123--04899625000010248248888676631356640224455344342472010576544585154
Q ss_pred --------------CCCC---------CCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCEECCCCEE
Q ss_conf --------------3334---------44443331420321000001122221112322356567742-56180699799
Q gi|254780283|r 213 --------------PEPP---------LFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRH-QLKMTNTNYIW 268 (321)
Q Consensus 213 --------------~~~~---------~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~-~~~~~~~g~i~ 268 (321)
.... .......+..-+...+....+.+|.+++++|..||.++.-. .+.+-++|.+.
T Consensus 222 s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~~lq~~edggik 301 (334)
T KOG2755 222 SQIDLQGISESENRSLTYLRNCVITSTDTSDNLSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIK 301 (334)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHEEEECCCHHHCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCEEEECCHHHHCCCCCEE
T ss_conf 31030123145532207755321231044010131003100366643635479961345767438962703420245804
Q ss_pred EECCCCCCCCCCEEEECCCCC
Q ss_conf 008885547898289701268
Q gi|254780283|r 269 TMPDSTATSIPGIFAAGDVAD 289 (321)
Q Consensus 269 ~~~~~~~Ts~p~Iya~GDv~~ 289 (321)
+++.|+||.|.+||+||+++
T Consensus 302 -vdd~m~tslpdvFa~gDvct 321 (334)
T KOG2755 302 -VDDAMETSLPDVFAAGDVCT 321 (334)
T ss_pred -EHHHCCCCCCCEEEECCEEC
T ss_conf -11105555653034122403
No 78
>PRK08275 putative oxidoreductase; Provisional
Probab=99.75 E-value=3.1e-17 Score=119.24 Aligned_cols=52 Identities=23% Similarity=0.398 Sum_probs=44.3
Q ss_pred CCEEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 97990088855478982897012688445678999979999999999997422
Q gi|254780283|r 265 NYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLSIHQ 317 (321)
Q Consensus 265 g~i~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~~~ 317 (321)
|.| .+|...|||+||+||+|+|++.+.+....|+-.|.+|+.++.+|++.+.
T Consensus 357 gGI-~vD~~~~T~I~GLyAaGE~a~~g~Nsl~~alV~G~~Ag~~aa~~~~~~~ 408 (554)
T PRK08275 357 SGV-WVNEKAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAEYVAGRD 408 (554)
T ss_pred CEE-EECCCCCEECCCCEEECHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 539-9889986503544550023335554126778879999999999973499
No 79
>KOG1346 consensus
Probab=99.74 E-value=4.5e-19 Score=129.93 Aligned_cols=287 Identities=21% Similarity=0.246 Sum_probs=162.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH---CCCCEEEEECC-CCC-CEEEEECCCCCCCCCCCCC--------CHHH-------
Q ss_conf 67519999897779999999998---69959999678-877-5687501007877477778--------9789-------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAAR---AMLKPVIIAGS-DLG-GQLMITESIENYPGFATSI--------RGDW------- 63 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r---~g~~v~iie~~-~~G-G~l~~~~~i~n~~g~~~~~--------~~~~------- 63 (321)
++...+|||+|.|..++ ..+.+ .+.+++++..+ ++. -+--.++.++.|+ -|..+ +|.+
T Consensus 177 ~hvp~liigggtaAfaa-~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~-dpn~~k~lrfkqwsGkeRsiffep 254 (659)
T KOG1346 177 KHVPYLIIGGGTAAFAA-FRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYG-DPNSAKKLRFKQWSGKERSIFFEP 254 (659)
T ss_pred CCCCEEEECCCCHHHHC-CCCCCCCCCCCEEEEECCCCCCCCCCCCCCHHCEECC-CCCHHHHEEECCCCCCCCEEEECC
T ss_conf 45855677377344320-4566567887358860367677656897442113569-997154043010478643157558
Q ss_pred ----HHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEE-CCCC-CCCEEECCCC
Q ss_conf ----9986643232002322211-3320112222222222222222100001477664202465-2774-3320210121
Q gi|254780283|r 64 ----LMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRL-ESEK-KFQGFGVSAC 136 (321)
Q Consensus 64 ----l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~i-pG~~-~~~~~~v~~~ 136 (321)
+...-...+.+-|+-++++ .|..|+.+++ .|.++||.++.||.++||||..|+.++. .... +-..+ +.++
T Consensus 255 d~FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~--~V~LnDG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~k-it~f 331 (659)
T KOG1346 255 DGFFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDK--KVILNDGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQK-ITYF 331 (659)
T ss_pred CCCEECHHHCCCCCCCCEEEEECCCEEEEECCCC--EEEECCCCEEEHHHEEEECCCCCCCCHHHHHCCHHHHHH-EEEE
T ss_conf 8504485777400268568973450478610007--688227857212104653277766415656438876622-5667
Q ss_pred CCCCCCC------CCCCCEEEEECCCCCCCCEEEEECC----CCCCCCC-CCC---CCCCC---CCCCCCCCCCCCCCCC
Q ss_conf 1111111------1221000010255654310121013----3322234-434---33221---1112112235544332
Q gi|254780283|r 137 ATCDGFF------YKNKDVIVVGGGNTAAEEALHLAKI----ARRVTIV-HRR---SSLRS---EKILQEKLFLQSNIDF 199 (321)
Q Consensus 137 ~~~d~~~------~~~k~v~ViGgG~~g~e~A~~L~~~----~~~Vtli-~r~---~~l~~---~~~~~~~~~~~~~i~~ 199 (321)
.+.+.+. ..-++|.|||+|..|-|+|..|.+. +.+|+-+ ... ..+.. +++..+++ .+.+|.+
T Consensus 332 r~p~DF~rlek~~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~eki-r~~GV~V 410 (659)
T KOG1346 332 RYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKI-RKGGVDV 410 (659)
T ss_pred ECCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH-HHCCCEE
T ss_conf 453278899876522225899757501456787887766206848998400128766651788878889999-8569412
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHC-CCCEECC-CCEEEECCCCCCC
Q ss_conf 2223112114864333444443331420321000001122221112322356567742-5618069-9799008885547
Q gi|254780283|r 200 LFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRH-QLKMTNT-NYIWTMPDSTATS 277 (321)
Q Consensus 200 ~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~-~~~~~~~-g~i~~~~~~~~Ts 277 (321)
+.+..|..+....... -+++.+ ..++..|.|++|+|-.||+++++. ++++|++ |.+.+ |.-++ -
T Consensus 411 ~pna~v~sv~~~~~nl-------~lkL~d-----G~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrv-naeL~-a 476 (659)
T KOG1346 411 RPNAKVESVRKCCKNL-------VLKLSD-----GSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRV-NAELK-A 476 (659)
T ss_pred CCCHHHHHHHHCCCCE-------EEEECC-----CCEEEECEEEEEECCCCCHHHCCCCCCEECCCCCCEEE-EHEEE-C
T ss_conf 5410246665202126-------899258-----87645135999835788643304567155000376774-12000-1
Q ss_pred CCCEEEECCCCCCC-----HHH---HHHHHHHHHHHHHHHH
Q ss_conf 89828970126884-----456---7899997999999999
Q gi|254780283|r 278 IPGIFAAGDVADER-----YRQ---AITAAAMGCMAALEVE 310 (321)
Q Consensus 278 ~p~Iya~GDv~~~~-----~~~---~~~A~~~G~~Aa~~i~ 310 (321)
..|||++||.+... -+. +-.|.-+|+.|+.|+-
T Consensus 477 r~NvwvAGdaacF~D~~LGrRRVehhdhavvSGRLAGENMt 517 (659)
T KOG1346 477 RENVWVAGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMT 517 (659)
T ss_pred CCCEEEECCHHHHHCCCCCCEECCCCCCCEEECEECCCCCC
T ss_conf 54336504244540531110000324432450200265444
No 80
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.73 E-value=8.2e-17 Score=116.73 Aligned_cols=39 Identities=31% Similarity=0.249 Sum_probs=36.5
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 987675199998977799999999986995999967887
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL 39 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~ 39 (321)
|.+.+|||+|||+|.|||+||+++++.|.+|+|++|..+
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~a~~~G~~V~lv~K~~~ 39 (566)
T PRK06452 1 MEKLSYDAVIIGAGLAGLMAAHEIASAGYSVAVISKVFP 39 (566)
T ss_pred CCEEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 966870789999749999999999877997899978899
No 81
>KOG3851 consensus
Probab=99.72 E-value=1.1e-17 Score=121.86 Aligned_cols=288 Identities=18% Similarity=0.186 Sum_probs=156.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CC-CEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHH-HHHHHHHHHH--HCC
Q ss_conf 87675199998977799999999986-99-5999967887756875010078774777789789-9986643232--002
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARA-ML-KPVIIAGSDLGGQLMITESIENYPGFATSIRGDW-LMEQMRQQAE--NFG 76 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~-g~-~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~-l~~~~~~~~~--~~~ 76 (321)
+.++++|+|+|||.+|++.|-...|. +. ++.|+|..+. + +--|||..-=-|-. |...-+++++ .-+
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~--------H-yYQPgfTLvGgGl~~l~~srr~~a~liP~~ 106 (446)
T KOG3851 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED--------H-YYQPGFTLVGGGLKSLDSSRRKQASLIPKG 106 (446)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEECCHHH--------C-CCCCCEEEECCCHHHHHHCCCCCCCCCCCC
T ss_conf 3003489998678630578999986568985577552153--------2-457651786430444655367411115677
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCC----C---CEEECCCCCCCCCC---CCCC
Q ss_conf 322211332011222222222222222210000147766420246527743----3---20210121111111---1122
Q gi|254780283|r 77 TKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKK----F---QGFGVSACATCDGF---FYKN 146 (321)
Q Consensus 77 v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~----~---~~~~v~~~~~~d~~---~~~~ 146 (321)
...+...|.+.+++.+ +|.+++|++++||++|||+|.+-+.-.|+|+.+ . ..++..|....-.. +.+|
T Consensus 107 a~wi~ekv~~f~P~~N--~v~t~gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~G 184 (446)
T KOG3851 107 ATWIKEKVKEFNPDKN--TVVTRGGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKKG 184 (446)
T ss_pred CHHHHHHHHHCCCCCC--EEECCCCCEEEEEEEEEEEECEECCCHHCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 5899988875087767--47705996776656766540244402003757662599835546867899999999723578
Q ss_pred CCEEEEECCCCCCCCEE-----------EEECCC--CCCCCCCCC--CCCCCCCC---CCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 10000102556543101-----------210133--322234434--33221111---2112235544332222311211
Q gi|254780283|r 147 KDVIVVGGGNTAAEEAL-----------HLAKIA--RRVTIVHRR--SSLRSEKI---LQEKLFLQSNIDFLFDTEVVDV 208 (321)
Q Consensus 147 k~v~ViGgG~~g~e~A~-----------~L~~~~--~~Vtli~r~--~~l~~~~~---~~~~~~~~~~i~~~~~~~v~~i 208 (321)
. +|.---+.-+.||. .+++.| .++.++... +.+-.-+. ..+++.++.+|++-+...+.|+
T Consensus 185 N--AIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL~k~~~~rni~vn~krnLiEV 262 (446)
T KOG3851 185 N--AIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADALEKVIQERNITVNYKRNLIEV 262 (446)
T ss_pred C--EEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEECCCCCEECHHHHHHHHHHHHHHCCEEEEECCCEEEE
T ss_conf 6--57834998641178853311235999987275556527985176501037889999999987545376301235898
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCC-CCCCEEEECCC
Q ss_conf 48643334444433314203210000011222211123223565677425618069979900888554-78982897012
Q gi|254780283|r 209 IGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTAT-SIPGIFAAGDV 287 (321)
Q Consensus 209 ~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~T-s~p~Iya~GDv 287 (321)
.++.....-+.. .++|..++++.+.+-+.-.-. ..+.++..-..|.-||+-++.+++|+ ..|+||++|||
T Consensus 263 ~~~~~~AvFe~L--------~kPG~t~ei~yslLHv~Ppms-~pe~l~~s~~adktGfvdVD~~TlQs~kypNVFgiGDc 333 (446)
T KOG3851 263 RTNDRKAVFENL--------DKPGVTEEIEYSLLHVTPPMS-TPEVLANSDLADKTGFVDVDQSTLQSKKYPNVFGIGDC 333 (446)
T ss_pred ECCCHHHHHHHC--------CCCCCEEEEEEEEEECCCCCC-CHHHHHCCCCCCCCCCEECCHHHHCCCCCCCCEEECCC
T ss_conf 536414388754--------799851477560364169988-72554137565755646547323202568870241234
Q ss_pred CCCCH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 68844-5678999979999999999
Q gi|254780283|r 288 ADERY-RQAITAAAMGCMAALEVEH 311 (321)
Q Consensus 288 ~~~~~-~~~~~A~~~G~~Aa~~i~~ 311 (321)
.+.|. +++..++.+-.+.-.|+..
T Consensus 334 ~n~PnsKTaAAvaaq~~vv~~nl~~ 358 (446)
T KOG3851 334 MNLPNSKTAAAVAAQSPVVDKNLTQ 358 (446)
T ss_pred CCCCCHHHHHHHHHCCCHHHHHHHH
T ss_conf 6899526678887427443565999
No 82
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.70 E-value=1.2e-15 Score=109.95 Aligned_cols=117 Identities=23% Similarity=0.300 Sum_probs=79.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CC------CEEEEEC---CCCCC------------------
Q ss_conf 98767519999897779999999998699599996788-77------5687501---00787------------------
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LG------GQLMITE---SIENY------------------ 52 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~G------G~l~~~~---~i~n~------------------ 52 (321)
|+..+|||+||||||||++||+.|+|.|++|+|+||.+ +| |.+++.. .+.+|
T Consensus 1 m~~~~fDVIVVGAGPAGsaAA~~LA~~Gl~VllLEKg~~pG~k~~sG~~l~~~~l~~liP~~~~~aP~er~V~~~~~~~l 80 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFM 80 (428)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCEECCCHHHHHCCCCHHCCCCCEEEEEEEEEEE
T ss_conf 98875778999968899999999987899099996788899876117540520688868784102986247898689998
Q ss_pred ----------CCCCCC--------CCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf ----------747777--------897899986643232002322211-3320112222222222222222100001477
Q gi|254780283|r 53 ----------PGFATS--------IRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIAT 113 (321)
Q Consensus 53 ----------~g~~~~--------~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAt 113 (321)
+..+.. ++..+|-..+-+++++.|++++.+ +|+.+..+++..+-...+|+.++++.+|+|-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~y~V~R~~FD~wLa~~Ae~aGA~i~~g~~V~~li~~~GrVvGV~~~G~~i~A~vVI~Ad 160 (428)
T PRK10157 81 TEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILAD 160 (428)
T ss_pred CCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCEEEEEEEEEEC
T ss_conf 68984556777877566887618989999999999999980988986858100143489799997589589871799944
Q ss_pred CCCC
Q ss_conf 6642
Q gi|254780283|r 114 GSEV 117 (321)
Q Consensus 114 G~~~ 117 (321)
|...
T Consensus 161 Gv~s 164 (428)
T PRK10157 161 GVNS 164 (428)
T ss_pred CCHH
T ss_conf 7217
No 83
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.68 E-value=1.1e-16 Score=115.95 Aligned_cols=115 Identities=34% Similarity=0.505 Sum_probs=89.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CC--------CEEEEEC------CCCCCCC--------------
Q ss_conf 67519999897779999999998699599996788-77--------5687501------0078774--------------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LG--------GQLMITE------SIENYPG-------------- 54 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~G--------G~l~~~~------~i~n~~g-------------- 54 (321)
..+||+|||||||||-||+.+++.|.+|+|+|+.. +| |+|..++ .+.+||+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~ 81 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP 81 (408)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHCCH
T ss_conf 74218998887889999998864698799980586422136853788743326505899997589820677889872798
Q ss_pred ----------------------CCCCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf ----------------------7777897899986643232002322211-33201122222222222222221000014
Q gi|254780283|r 55 ----------------------FATSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVI 111 (321)
Q Consensus 55 ----------------------~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIi 111 (321)
||...+...+++.+.+.+++.+++++++ +|.+++.++..|.+.+++|++++++++|+
T Consensus 82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil 161 (408)
T COG2081 82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL 161 (408)
T ss_pred HHHHHHHHHCCCEEEECCCCEECCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEECCCCCEEECCEEEE
T ss_conf 99999998659715774685255786666899999999999759589814647767633855899859998898048999
Q ss_pred CCC--CCCE
Q ss_conf 776--6420
Q gi|254780283|r 112 ATG--SEVK 118 (321)
Q Consensus 112 AtG--~~~~ 118 (321)
||| |.|+
T Consensus 162 AtGG~S~P~ 170 (408)
T COG2081 162 ATGGKSWPK 170 (408)
T ss_pred ECCCCCCCC
T ss_conf 228867787
No 84
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=99.68 E-value=4.4e-16 Score=112.48 Aligned_cols=49 Identities=27% Similarity=0.320 Sum_probs=41.7
Q ss_pred EEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9008885547898289701268844567899997999999999999742
Q gi|254780283|r 268 WTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 268 ~~~~~~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
+.+|++.+|++||+||+|||+..+.+-...|.-.|.+|+.++.+|++..
T Consensus 364 vwVd~~~~TtVpGLYAAGDvAcVphNymlga~VfG~~AG~~Aaey~a~~ 412 (894)
T PRK13800 364 VWVDEHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAASTLADV 412 (894)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4755786302565410610024665402555221487768999998468
No 85
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.68 E-value=8.9e-16 Score=110.69 Aligned_cols=302 Identities=19% Similarity=0.219 Sum_probs=169.2
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC----CCCEEEEECCCC--------------------CCC--
Q ss_conf 9876751999989777999999999869-9599996788----775687501007--------------------877--
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAM-LKPVIIAGSD----LGGQLMITESIE--------------------NYP-- 53 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g-~~v~iie~~~----~GG~l~~~~~i~--------------------n~~-- 53 (321)
|+.+.+|++.||-||+-|+-|.-+...+ ++++.+|+.. -.|++.+...+- ||+
T Consensus 1 ~~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 1 MMAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCHHHHHHHHH
T ss_conf 98764026887048327899987350257525787347888767875557864445005632553589983079999987
Q ss_pred -----CC----CCCCCHHHHHHHHHHHHHHCCCCCCCE-EEE---ECCCCCC-CCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf -----47----777897899986643232002322211-332---0112222-222222222222100001477664202
Q gi|254780283|r 54 -----GF----ATSIRGDWLMEQMRQQAENFGTKIIQD-LVV---SVDLDRH-PFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 54 -----g~----~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~---~i~~~~~-~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
.| ...++..|+.++++..+.++ .....+ .|. +++.+.. ...+.+.++.+++++.|++++|.+|..
T Consensus 81 h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~I 159 (436)
T COG3486 81 HGRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYI 159 (436)
T ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCCCCCCEECCCCCCCCCCEEEEEEECCCCCEEEEEEEEECCCCCCCC
T ss_conf 0657655420023555888999999998408-723368701221024776305899982788478860379825997678
Q ss_pred EE----ECCCCCCCEEECCCCCCC-CCCCCCCCC-EEEEECCCCCCCCEEEEEC----CCCCCCCCCCCCCCCCCCC---
Q ss_conf 46----527743320210121111-111112210-0001025565431012101----3332223443433221111---
Q gi|254780283|r 120 LR----LESEKKFQGFGVSACATC-DGFFYKNKD-VIVVGGGNTAAEEALHLAK----IARRVTIVHRRSSLRSEKI--- 186 (321)
Q Consensus 120 ~~----ipG~~~~~~~~v~~~~~~-d~~~~~~k~-v~ViGgG~~g~e~A~~L~~----~~~~Vtli~r~~~l~~~~~--- 186 (321)
|+ +++... +|..... +......|+ |.|||+|-||.|+-..|.. ...++.|+.|+..+.+.++
T Consensus 160 P~~f~~l~~~~v-----fHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf 234 (436)
T COG3486 160 PPCFRSLIGERV-----FHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKF 234 (436)
T ss_pred CHHHHCCCCCCE-----EEHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCCCCHH
T ss_conf 767737575332-----524889876078654762899847823999999997277875731001113677772433413
Q ss_pred --------CC-----------CCCC-----------------------------CCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf --------21-----------1223-----------------------------55443322223112114864333444
Q gi|254780283|r 187 --------LQ-----------EKLF-----------------------------LQSNIDFLFDTEVVDVIGSIPEPPLF 218 (321)
Q Consensus 187 --------~~-----------~~~~-----------------------------~~~~i~~~~~~~v~~i~g~~~~~~~~ 218 (321)
.. +++. .+.++.++.+++++.++....
T Consensus 235 ~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~----- 309 (436)
T COG3486 235 GLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGD----- 309 (436)
T ss_pred HHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECCCC-----
T ss_conf 454428103778843998999988761175323458889999999999987358887700013552135552789-----
Q ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCH-HHH---HCCCCEECCCCEEEECCCC-CC--CCC-CEEEECCCCC-
Q ss_conf 4433314203210000011222211123223565-677---4256180699799008885-54--789-8289701268-
Q gi|254780283|r 219 PSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNT-KIF---RHQLKMTNTNYIWTMPDST-AT--SIP-GIFAAGDVAD- 289 (321)
Q Consensus 219 ~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~-~~~---~~~~~~~~~g~i~~~~~~~-~T--s~p-~Iya~GDv~~- 289 (321)
..-.+.+....+++..++++|.||+|+|++... .++ .+.+..+++|...+..++. .. +.+ .||+.|-.-.
T Consensus 310 -g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht 388 (436)
T COG3486 310 -GRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT 388 (436)
T ss_pred -CEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCCCEEECCCEEEECCCCCCCEEEEECCCCCC
T ss_conf -5388887642579836888618998034566786466667786245646874764745650379876307981464334
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 844567899997999999999999742
Q gi|254780283|r 290 ERYRQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 290 ~~~~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
++. ...-.+-|+.=|..|.+.|..|
T Consensus 389 HGi--g~pdLsl~a~Raa~I~~~L~g~ 413 (436)
T COG3486 389 HGI--GAPDLSLGAWRAAVILNSLLGR 413 (436)
T ss_pred CCC--CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 666--7754027999999999987376
No 86
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.68 E-value=2.6e-15 Score=108.00 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=36.0
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 987675199998977799999999986995999967887
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL 39 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~ 39 (321)
|..++|||+|||+|.|||+||+++++.|.+|+|++|..+
T Consensus 8 ~~~~~~DVlVIGsG~AGl~AA~~a~~~G~~V~li~K~~~ 46 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFP 46 (591)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 874477889999669999999999876995899978899
No 87
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.68 E-value=2.3e-16 Score=114.09 Aligned_cols=285 Identities=17% Similarity=0.163 Sum_probs=147.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC-CCCEEEEECCCCCC-CCCCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 67519999897779999999998-699599996788-77568750100787-7477778978999866432320023222
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAAR-AMLKPVIIAGSD-LGGQLMITESIENY-PGFATSIRGDWLMEQMRQQAENFGTKII 80 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r-~g~~v~iie~~~-~GG~l~~~~~i~n~-~g~~~~~~~~~l~~~~~~~~~~~~v~~~ 80 (321)
+=++|+|||+||||++||..|.+ .+.+|-+||+=. +-| |.. +.+ |.+|+- ..+.+.|.+-+.+-++.|+
T Consensus 38 rPlRVAIVGSGPAGfYaA~~Llk~~~v~VD~fErLP~PfG-LVR----yGVAPDHpev---Knv~~~f~~~a~~p~~rF~ 109 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYG-LIR----YGVAPDHIHV---KNTYRTFDLVFSSPNYRFF 109 (506)
T ss_pred CCCEEEEECCCCHHHHHHHHHHCCCCCEEEEEECCCCCCC-CCC----CCCCCCCHHH---HHHHHHHHHHHCCCCEEEE
T ss_conf 7657999888838999999996389977988826898874-111----0468898566---0689999999658975999
Q ss_pred CEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC----------CEEEEECCCCCCC-EEECC-------CCC-----
Q ss_conf 113320112222222222222222100001477664----------2024652774332-02101-------211-----
Q gi|254780283|r 81 QDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE----------VKWLRLESEKKFQ-GFGVS-------ACA----- 137 (321)
Q Consensus 81 ~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~----------~~~~~ipG~~~~~-~~~v~-------~~~----- 137 (321)
-+--.+-| |..++- .-.|++||+|+|+. .+.+.+||.+... ..+++ ++-
T Consensus 110 GNV~vG~D-------itl~eL-~~~YdAVVlA~GAs~~~~~~~~~~~~~~~~~ge~lp~~~~Gv~sA~eFV~WYNGhp~d 181 (506)
T PTZ00188 110 GNVHVGVD-------LKMEEL-RRHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGLFHARDLIYFYNNMYND 181 (506)
T ss_pred ECEEECCC-------CCHHHH-HHHCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHHCCCCCCCCCCC
T ss_conf 47334898-------899999-8638999994797855556776520025886221455457728477711020399963
Q ss_pred ----CCCCCC---CCCCCEEEEECCCCCCCCEEEEECC---------------------CCCCCCCCCCCCCCCC---CC
Q ss_conf ----111111---1221000010255654310121013---------------------3322234434332211---11
Q gi|254780283|r 138 ----TCDGFF---YKNKDVIVVGGGNTAAEEALHLAKI---------------------ARRVTIVHRRSSLRSE---KI 186 (321)
Q Consensus 138 ----~~d~~~---~~~k~v~ViGgG~~g~e~A~~L~~~---------------------~~~Vtli~r~~~l~~~---~~ 186 (321)
..+.+. ...++++|||.||+|+|+|..|.+- -++|+++-||..+.+. ++
T Consensus 182 ~~~~~~~~~l~~~~~~~~avVIGnGNVALDVARILl~~~deL~~TDI~~~AL~~L~~S~Vk~V~ivGRRGp~qaaFT~kE 261 (506)
T PTZ00188 182 VRCRAVENYLKSFENFTTCIIIGNGNVSLDIARILVKSPNHLSKTDISSDYLKVMKQHKIKHIYIVGRRGFWQSSFTNAE 261 (506)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHCCCCEEEEEECCCHHHHCCCHHH
T ss_conf 12343322233324575479978873588878773589778435787199999998689847999843587760668799
Q ss_pred CC-----------------------------CCC-----------CC-------C-------CCCCCCCCCCEEECCCCC
Q ss_conf 21-----------------------------122-----------35-------5-------443322223112114864
Q gi|254780283|r 187 LQ-----------------------------EKL-----------FL-------Q-------SNIDFLFDTEVVDVIGSI 212 (321)
Q Consensus 187 ~~-----------------------------~~~-----------~~-------~-------~~i~~~~~~~v~~i~g~~ 212 (321)
+. .+. .. . ..+.+.+...+.++.+..
T Consensus 262 LREL~~L~~~~vvv~p~d~dl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~p~~i~~~~ 341 (506)
T PTZ00188 262 LRELISLENTKVILSKKNYDLCCHLKSDEANTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPID 341 (506)
T ss_pred HHHHHCCCCCEEEECHHHCCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEECCC
T ss_conf 99874689953885756514333333300102367789999999874055403585545663058998437861251579
Q ss_pred CCCCCCCCCCCEEECC--------CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCCCCCEEEE
Q ss_conf 3334444433314203--------21000001122221112322356567742561806997990088855478982897
Q gi|254780283|r 213 PEPPLFPSVSGVRLHN--------KKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAA 284 (321)
Q Consensus 213 ~~~~~~~~~~~v~~~~--------~~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts~p~Iya~ 284 (321)
..+..+.+.. ...++...++|+.|+-++|++... +. ..-.++..... .++..+ ..+|+|++
T Consensus 342 ------g~v~~~~l~~n~~~~~~~~~~~e~e~i~~~LVirSIGYrg~~--~~-~~~~~~~~~~~-~~~~g~-~~~glY~a 410 (506)
T PTZ00188 342 ------GAMKNVELELNRNVPMSFSSFKENKVLVTPLVIFATGFKKSN--FA-ENLYNQSVQMF-REDIGQ-HKFAIFKA 410 (506)
T ss_pred ------CCEEEEEEEECCCCCCCCCCCCCEEEEECCEEEECCCCCCCC--CC-CCCCCCCCCCC-CCCCCC-CCCCEEEE
T ss_conf ------945689977346546777775513898779899793768899--89-88888777766-788888-67872865
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0126884456789999799999999999974
Q gi|254780283|r 285 GDVADERYRQAITAAAMGCMAALEVEHYLSI 315 (321)
Q Consensus 285 GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~ 315 (321)
|=+..+|.-.+-+-|.+....|..+.++|..
T Consensus 411 GWiKRGP~GVIgTtm~da~~ta~~vl~dl~~ 441 (506)
T PTZ00188 411 GWFDKGPKGNIASQILNSKNSTHLVLNFLQK 441 (506)
T ss_pred EECCCCCCEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 7456388520027867789999999987754
No 88
>PTZ00139 succinate dehydrogenase (flavoprotein) subunit; Provisional
Probab=99.67 E-value=2.6e-15 Score=107.97 Aligned_cols=38 Identities=24% Similarity=0.279 Sum_probs=34.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 76751999989777999999999869959999678877
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG 40 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~G 40 (321)
.++|||+|||+|.|||+||+++++.|.+|+|+||..+.
T Consensus 32 ~~~yDVlVIGsG~AGL~AAi~a~~~G~~V~lleK~~~~ 69 (622)
T PTZ00139 32 DHTYDAVVVGAGGAGLRAALGLSESGYKTACISKLFPT 69 (622)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 77658799996699999999999769908999788999
No 89
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.66 E-value=7e-15 Score=105.45 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=35.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 987675199998977799999999986995999967887
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL 39 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~ 39 (321)
|..++|||+|||+|.|||+||+++++.|.+|+|++|..+
T Consensus 8 ~~d~e~DVlVIGsG~AGL~AAi~a~~~G~~V~li~K~~~ 46 (598)
T PRK09078 8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLRTACITKVFP 46 (598)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 556637989999569999999999874990799978899
No 90
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.65 E-value=8.2e-15 Score=105.07 Aligned_cols=38 Identities=18% Similarity=0.250 Sum_probs=34.4
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 87675199998977799999999986995999967887
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL 39 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~ 39 (321)
.-++|||+|||+|.|||+||+++++.|.+|+|++|..+
T Consensus 4 ~~~e~DVlVIGsG~AGl~AAi~a~~~g~~V~lv~K~~~ 41 (588)
T PRK08958 4 PVREFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 87567989999549999999999874993899978898
No 91
>pfam03486 HI0933_like HI0933-like protein.
Probab=99.65 E-value=7.2e-16 Score=111.24 Aligned_cols=110 Identities=34% Similarity=0.538 Sum_probs=82.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC--------EEEEECCC------CCCC-----------------
Q ss_conf 519999897779999999998699599996788-775--------68750100------7877-----------------
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG--------QLMITESI------ENYP----------------- 53 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG--------~l~~~~~i------~n~~----------------- 53 (321)
|||+|||||||||.||+++++.|.+|+|+|+.. +|- +|..++.. .+|+
T Consensus 1 yDv~VIGgGaaGl~aAi~aa~~g~~V~ilEk~~~~GkKll~tG~GRCN~TN~~~~~~~~~~~~~~~~fl~~~l~~F~~~d 80 (405)
T pfam03486 1 YDVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISGGGRCNVTNSVEPDNFLSRYPGNPHFLKSALSRFTPWD 80 (405)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCCCHHHHHHHHHHCCHHH
T ss_conf 97999996699999999998689959999589987501588268961407899979998625775799999998489999
Q ss_pred --------C-----------CCCCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCC-CCCCCCCCCCCCCCEECCC
Q ss_conf --------4-----------7777897899986643232002322211-33201122222-2222222222210000147
Q gi|254780283|r 54 --------G-----------FATSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHP-FLVETQSGDLWHADAVVIA 112 (321)
Q Consensus 54 --------g-----------~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~-~~v~~~~g~~~~a~~lIiA 112 (321)
| ||..-....+++.+...+++.+++++.+ +|.+|..+++. |.+.++ +.++.+|+||+|
T Consensus 81 ~~~ff~~~Gl~~~~e~~GrvfP~s~~A~~Vl~~L~~~l~~~gV~i~~~~~V~~I~~~~~~~~~v~~~-~~~~~a~~vIlA 159 (405)
T pfam03486 81 FIAWFEELGVPLKEEDHGRLFPVSDKASDIVDALLNELKELGVKIRTRTRVLSVEKDDDGRFRVDTG-GEELEADSLVLA 159 (405)
T ss_pred HHHHHHHCCCEEEECCCCEEECCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEEC-CCEEEECEEEEE
T ss_conf 9999997799059778997978989869999999999997797899588878999759945999948-958972789990
Q ss_pred CCCC
Q ss_conf 7664
Q gi|254780283|r 113 TGSE 116 (321)
Q Consensus 113 tG~~ 116 (321)
||..
T Consensus 160 tGG~ 163 (405)
T pfam03486 160 TGGL 163 (405)
T ss_pred CCCC
T ss_conf 4886
No 92
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.64 E-value=8.5e-15 Score=104.98 Aligned_cols=113 Identities=27% Similarity=0.396 Sum_probs=69.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--CCEEEE----------EC------------------------
Q ss_conf 675199998977799999999986995999967887--756875----------01------------------------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL--GGQLMI----------TE------------------------ 47 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~--GG~l~~----------~~------------------------ 47 (321)
.++||+|||+|.|||+||+++++.| +++|+++..+ +|.... ..
T Consensus 6 i~TDVlVIGsG~AGl~AA~~a~~~g-~vvlv~k~~~~~sG~s~~a~gg~~a~~~~~Ds~e~~~~Dt~~~g~~l~d~~lv~ 84 (539)
T PRK06263 6 MITDVLIIGSGGAGARAAIEASQKG-TVVIVSKGLFGKSGCTVMAEGGYNAVLNPEDSFEKHFEDTMKGGAYLNDPKLVE 84 (539)
T ss_pred EECCEEEECCHHHHHHHHHHHHHCC-CEEEEECCCCCCCCCHHHHHHHHEEECCCCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 9649899995399999999998259-979997789899984788866771508999999999999998526888899999
Q ss_pred -----------CCCCC-----------------CC-------CCCCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCC
Q ss_conf -----------00787-----------------74-------7777897899986643232002322211-332011222
Q gi|254780283|r 48 -----------SIENY-----------------PG-------FATSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDR 91 (321)
Q Consensus 48 -----------~i~n~-----------------~g-------~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~ 91 (321)
++.+| .| +....+|.+++..+.+++.+.+++++.+ .++.+-.++
T Consensus 85 ~l~~~a~~~v~~L~~~G~~f~~~~~g~~~~~~~gg~s~~R~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~~~~~~Ll~~~ 164 (539)
T PRK06263 85 ILVKEAPKRLKDLEKFGAVFDRTEDGEIAQRPFGGQSFNRTCYAGDRTGHEMMMGLMEYLIKERIKILEEVMAIKLLVDE 164 (539)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEECC
T ss_conf 99999999999999839985127998673100478544432235776619999999999861697799515999999817
Q ss_pred -CC----CCCCCCCCC--CCCCCEECCCCCCCC
Q ss_conf -22----222222222--221000014776642
Q gi|254780283|r 92 -HP----FLVETQSGD--LWHADAVVIATGSEV 117 (321)
Q Consensus 92 -~~----~~v~~~~g~--~~~a~~lIiAtG~~~ 117 (321)
+. ..+...+|+ .+.++.||+|||...
T Consensus 165 ~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~ 197 (539)
T PRK06263 165 LGKVFGAVFLDLRNGDIVPIYAKSTILATGGAG 197 (539)
T ss_pred CCEEEEEEEEECCCCEEEEEEECEEEECCCCCC
T ss_conf 996999999977898299996056998989876
No 93
>PRK06175 L-aspartate oxidase; Provisional
Probab=99.64 E-value=1.4e-14 Score=103.79 Aligned_cols=114 Identities=18% Similarity=0.261 Sum_probs=68.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE--------EEEEC---------------------------
Q ss_conf 7675199998977799999999986995999967887756--------87501---------------------------
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQ--------LMITE--------------------------- 47 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~--------l~~~~--------------------------- 47 (321)
..++||+|||+|.|||+||++|+ .+.+|+|++|....+. +....
T Consensus 2 ~~~tDVlVIGsG~AGl~AAi~a~-~~~~V~li~K~~~~~~nS~~A~GGi~aa~~~dd~~~~~~DtlkaG~~~~d~~lv~~ 80 (433)
T PRK06175 2 NLYADVLIVGSGVAGLYCALNLR-KDLKIVLVSKKKLNECNTYLAQGGISVARNKEDIPTFVEDTLKAGQYKNNLEAVKI 80 (433)
T ss_pred CCCCCEEEECCCHHHHHHHHHCC-CCCCEEEEECCCCCCCCHHHHCCCCEEECCCCCHHHHHHHHHHHCCCCCCHHHHHH
T ss_conf 86487899995699999999617-89988999788999976687602724732899879999999986578788999999
Q ss_pred ----------CCCC-------------C---CC-------CCCCCCHHHHHHHHHHHHH-HCCCCCCCE-EEEECCCCCC
Q ss_conf ----------0078-------------7---74-------7777897899986643232-002322211-3320112222
Q gi|254780283|r 48 ----------SIEN-------------Y---PG-------FATSIRGDWLMEQMRQQAE-NFGTKIIQD-LVVSVDLDRH 92 (321)
Q Consensus 48 ----------~i~n-------------~---~g-------~~~~~~~~~l~~~~~~~~~-~~~v~~~~~-~V~~i~~~~~ 92 (321)
++.+ | -| ++...+|..++..+.+++. +.+++++.+ .++.+-.+++
T Consensus 81 l~~~s~~ai~~L~~~Gv~f~r~~~g~~~~r~GgHs~~R~~~~~d~tG~~i~~~L~~~~~~~~~I~i~~~~~~~~Li~~~~ 160 (433)
T PRK06175 81 LANESIENINKLIDMGLNFDKDEKELNYTKEGAHSVNRIVHFKDYTGKKVEKILLKKVKKRKNITIIENCELVDIIENDN 160 (433)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEECC
T ss_conf 99988999999997598621168872454146566785233588629999999999997179967997388788787389
Q ss_pred CCC--CCCCCCC--CCCCCEECCCCCCCC
Q ss_conf 222--2222222--221000014776642
Q gi|254780283|r 93 PFL--VETQSGD--LWHADAVVIATGSEV 117 (321)
Q Consensus 93 ~~~--v~~~~g~--~~~a~~lIiAtG~~~ 117 (321)
... +...+++ .+.+++||+|||...
T Consensus 161 ~v~G~v~~~~g~~~~i~AkaVILATGG~g 189 (433)
T PRK06175 161 TCIGGILLKDNKQINIYSKVTILATGGIG 189 (433)
T ss_pred EEEEEEEEECCCEEEEEECEEEECCCCCC
T ss_conf 89999999579789998366998679865
No 94
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.64 E-value=1.2e-14 Score=104.20 Aligned_cols=114 Identities=23% Similarity=0.393 Sum_probs=70.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCC-CEEEEE-------------C--------------------
Q ss_conf 6751999989777999999999869--959999678877-568750-------------1--------------------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAM--LKPVIIAGSDLG-GQLMIT-------------E-------------------- 47 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g--~~v~iie~~~~G-G~l~~~-------------~-------------------- 47 (321)
.++||+|||+|.|||+||+++++.+ .+|+|++|..+. |..... .
T Consensus 2 ~e~DVLVIGsG~AGl~AA~~a~~~~~~~~V~lv~K~~~~~~~s~~a~gGi~a~~~~~~~~Ds~e~~~~Dt~k~g~~l~d~ 81 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIARLDPSLDVAVVAKTHPIRSHSVAAQGGIAASLKNVDPQDSWEAHAFDTVKGSDYLADQ 81 (575)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCH
T ss_conf 40898999965999999999998789982999978899997268887889988437999989999999999864688889
Q ss_pred ---------------CCC--C---------------CCCC-------CCCCCHHHHHHHHHHHHHHCCCCCCCE-EEEEC
Q ss_conf ---------------007--8---------------7747-------777897899986643232002322211-33201
Q gi|254780283|r 48 ---------------SIE--N---------------YPGF-------ATSIRGDWLMEQMRQQAENFGTKIIQD-LVVSV 87 (321)
Q Consensus 48 ---------------~i~--n---------------~~g~-------~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i 87 (321)
+++ . +.|+ ....+|..++..+.+++.+.+++++.+ .++.+
T Consensus 82 ~lv~~l~~~~~~~v~~Le~~Gv~f~r~~dG~~~~~~~gGhs~~R~~~~~~~tG~~i~~~L~~~~~~~gv~i~~~~~v~~L 161 (575)
T PRK05945 82 DAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQRAFGGHSHNRTCYAADKTGHAILHELVNNLRRYGVTIYDEWYVMRL 161 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEE
T ss_conf 99999999999999999986997760889888011036710255545688839999999999985469789941788889
Q ss_pred CCCCCCC----CCCCCCC--CCCCCCEECCCCCCCC
Q ss_conf 1222222----2222222--2221000014776642
Q gi|254780283|r 88 DLDRHPF----LVETQSG--DLWHADAVVIATGSEV 117 (321)
Q Consensus 88 ~~~~~~~----~v~~~~g--~~~~a~~lIiAtG~~~ 117 (321)
-.+++.. .+...+| ..+++|.||+|||...
T Consensus 162 l~~dg~v~Ga~~~~~~~G~~~~i~AkaVVlATGG~~ 197 (575)
T PRK05945 162 ILEENEAKGVVMYHIADGRLEVVRAKAVMFATGGYG 197 (575)
T ss_pred EEECCEEEEEEEEECCCCCEEEEECCEEEECCCCCC
T ss_conf 870997899999971688389998998998999987
No 95
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.63 E-value=7.2e-15 Score=105.41 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=34.2
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 987675199998977799999999986995999967887
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL 39 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~ 39 (321)
|..++|||+|||+|.|||+||+++++ +.+++|++|..+
T Consensus 1 ~~~~~~DVlVIGsG~AGl~AAi~a~~-~~~v~vi~K~~~ 38 (583)
T PRK08205 1 MQQHRYDVVIVGAGGAGMRAAIEAGP-RARTAVLTKLYP 38 (583)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCC
T ss_conf 97431788999962999999997156-997799978899
No 96
>PRK07804 L-aspartate oxidase; Provisional
Probab=99.62 E-value=7.1e-15 Score=105.43 Aligned_cols=39 Identities=33% Similarity=0.520 Sum_probs=35.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 767519999897779999999998699599996788775
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG 41 (321)
++..||+|||+|.|||.||+.+++.|.+|+|+||..+++
T Consensus 13 ~~~tDVlVIG~G~AGl~AAi~a~~~G~~V~vv~K~~~~~ 51 (533)
T PRK07804 13 RDAADVVVIGTGVAGLTAALAAHRAGRRVVVLSKAALTA 51 (533)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 622688999964999999999986799889997889999
No 97
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.61 E-value=2.4e-14 Score=102.40 Aligned_cols=39 Identities=33% Similarity=0.500 Sum_probs=35.0
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCC
Q ss_conf 987675199998977799999999986---995999967887
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARA---MLKPVIIAGSDL 39 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~---g~~v~iie~~~~ 39 (321)
|...+|||+|||+|.|||+||+++++. +.+|+|+||...
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AA~~a~~~~~~~~~V~lv~K~~~ 42 (582)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAARASGGKISIAVVSKTQA 42 (582)
T ss_pred CCEEECCEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCC
T ss_conf 977870689999739999999999985389986999979899
No 98
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=99.61 E-value=9.9e-15 Score=104.59 Aligned_cols=39 Identities=28% Similarity=0.336 Sum_probs=36.4
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 987675199998977799999999986995999967887
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL 39 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~ 39 (321)
|....+||+|||+|.|||+||+++++.|.+|+|+++..+
T Consensus 1 m~~i~tDVLVIG~G~AGL~AAl~a~e~G~~V~vl~K~~~ 39 (657)
T PRK08626 1 MKIIYTDSLVIGAGLAGLRVAIAAKERGLDTIVLSLVPA 39 (657)
T ss_pred CCEEECCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 973751689999659999999999975995799968889
No 99
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.61 E-value=3.4e-14 Score=101.48 Aligned_cols=53 Identities=25% Similarity=0.372 Sum_probs=40.1
Q ss_pred CCCEEEECCCCCCCCCCEEEECCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99799008885547898289701268844-------5678999979999999999997422
Q gi|254780283|r 264 TNYIWTMPDSTATSIPGIFAAGDVADERY-------RQAITAAAMGCMAALEVEHYLSIHQ 317 (321)
Q Consensus 264 ~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~-------~~~~~A~~~G~~Aa~~i~~yl~~~~ 317 (321)
-|.+. +|...+|++||+||+|+|+++.+ +.+..++-.|.+|+.++.+|+..+.
T Consensus 355 mGGi~-iD~~~~T~IpGLyAaGE~a~g~HGaNRLggNSLle~~VfG~~Ag~~Aa~~~~~~~ 414 (589)
T PRK08641 355 MGGLW-VDYDQMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAIRYIKGLG 414 (589)
T ss_pred CCCEE-ECCCCCCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 58767-8898862368727754445566775544310499999989999999999997468
No 100
>PRK08401 L-aspartate oxidase; Provisional
Probab=99.60 E-value=8.2e-15 Score=105.07 Aligned_cols=112 Identities=23% Similarity=0.312 Sum_probs=70.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE-------EE-EEC------------------------------
Q ss_conf 5199998977799999999986995999967887756-------87-501------------------------------
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQ-------LM-ITE------------------------------ 47 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~-------l~-~~~------------------------------ 47 (321)
+||+|||+|.|||+||+++++.|.+++|+++...++. +. ...
T Consensus 2 tdVlVVGsG~AGl~AAl~a~~~g~~v~li~k~~~~~~s~~A~gGi~~~~~~~Ds~e~h~~Dt~~~G~gl~d~~lv~~l~~ 81 (464)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTVIGPGSKDSNSYLAQAGIAFPLLEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (464)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHCCEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 87999897699999999999749969999589999514776112064028999999999999995589888999999999
Q ss_pred -------CCC--CC--------CCC-------CCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf -------007--87--------747-------777897899986643232002322211332011222222222222222
Q gi|254780283|r 48 -------SIE--NY--------PGF-------ATSIRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDL 103 (321)
Q Consensus 48 -------~i~--n~--------~g~-------~~~~~~~~l~~~~~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g~~ 103 (321)
++. .+ .|+ ....+|.+++..+.+++.+.+++++...+..+..+++...=..-+++.
T Consensus 82 ~a~~~i~~L~~~Gv~f~~~~~~GGhs~~R~~~~~~~tG~~i~~~L~~~~~~~~v~~~~~~~~~l~~~dg~v~Gv~~~ge~ 161 (464)
T PRK08401 82 KSTEAYDFLTSLGVEFTGNELEGGHSFPRVFTIKNETGKHLIPILEKHARELGVNFIRGFAEELAIKNGKAYGVFLNGEL 161 (464)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHEEECCEEEEEEECCEE
T ss_conf 99999999997699887788789743320267367658999999999999739857867657570228989999988889
Q ss_pred CCCCEECCCCCCCC
Q ss_conf 21000014776642
Q gi|254780283|r 104 WHADAVVIATGSEV 117 (321)
Q Consensus 104 ~~a~~lIiAtG~~~ 117 (321)
+.+++||+|||...
T Consensus 162 i~~~aVIlATGG~g 175 (464)
T PRK08401 162 LKFDAVIIASGGFS 175 (464)
T ss_pred EEECEEEECCCCCC
T ss_conf 88565998999865
No 101
>PRK10015 hypothetical protein; Provisional
Probab=99.60 E-value=4.3e-15 Score=106.70 Aligned_cols=115 Identities=28% Similarity=0.436 Sum_probs=78.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC------EEEEECCCCC-CCCC-----------------
Q ss_conf 98767519999897779999999998699599996788-775------6875010078-7747-----------------
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG------QLMITESIEN-YPGF----------------- 55 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG------~l~~~~~i~n-~~g~----------------- 55 (321)
|+..+|||+||||||||++||+.|+|.|++|+|+||.+ +|. .++. +.++. +|+|
T Consensus 1 m~~e~fDVIVVGaGPAG~sAA~~LAk~Gl~VlllErg~~~G~k~~sGgvl~~-~~le~liP~~~~~aP~er~V~~~~~~~ 79 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYA-HTLEAIIPGFAASAPVERKVTREKISF 79 (429)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCEECH-HHHHHHCCCCCCCCCCCEEEEEEEEEE
T ss_conf 9976158899996889999999998779919999678879985512637416-278886889644798521589878999
Q ss_pred --------------CCC--------CCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCC-CCCCCCCCCCCCEECC
Q ss_conf --------------777--------897899986643232002322211-3320112222222-2222222221000014
Q gi|254780283|r 56 --------------ATS--------IRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFL-VETQSGDLWHADAVVI 111 (321)
Q Consensus 56 --------------~~~--------~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~-v~~~~g~~~~a~~lIi 111 (321)
+.. ++-..|-.-+.+++++.|++++.+ .|+.+..+++... |.+.+ +.++++.+|+
T Consensus 80 l~~~~~~~i~~~~~~~~~~~~~~y~v~R~~fD~WLa~~Ae~aGa~i~~g~~v~~l~~e~g~V~GV~tg~-~~l~A~vVI~ 158 (429)
T PRK10015 80 LTEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGD-DILEANVVIL 158 (429)
T ss_pred ECCCCCEECCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCC-CEEEEEEEEE
T ss_conf 878980666765678676677865989999999999999975999977958999996299899998798-2688658998
Q ss_pred CCCCCC
Q ss_conf 776642
Q gi|254780283|r 112 ATGSEV 117 (321)
Q Consensus 112 AtG~~~ 117 (321)
|-|+..
T Consensus 159 AdGvns 164 (429)
T PRK10015 159 ADGVNS 164 (429)
T ss_pred ECCCCH
T ss_conf 156227
No 102
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=99.59 E-value=5.9e-14 Score=100.08 Aligned_cols=37 Identities=41% Similarity=0.473 Sum_probs=33.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCC
Q ss_conf 7675199998977799999999986--995999967887
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARA--MLKPVIIAGSDL 39 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~--g~~v~iie~~~~ 39 (321)
+-++||+|||+|.|||+||+++++. +.+|+|++|..+
T Consensus 2 t~~~DVlVIGsG~AGl~AAi~a~~~~~g~~V~lv~K~~~ 40 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP 40 (582)
T ss_pred CEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 135568999966999999999998689985999978998
No 103
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=99.59 E-value=3e-14 Score=101.82 Aligned_cols=109 Identities=33% Similarity=0.394 Sum_probs=73.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEE-ECCCCCCEEE--EE----------CC----------------C----CCC-
Q ss_conf 1999989777999999999869959999-6788775687--50----------10----------------0----787-
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQLM--IT----------ES----------------I----ENY- 52 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~ii-e~~~~GG~l~--~~----------~~----------------i----~n~- 52 (321)
||+|||||.||..||+.++|.|.+|+|+ .+.+.-|++. ++ .+ + .|-
T Consensus 1 DViVIGgGhAG~EAA~aaAr~G~~v~Lit~~~~~ig~msCnpSiGG~gkG~LvrEidaLgG~m~~~aD~s~Iq~r~LN~s 80 (391)
T pfam01134 1 DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGGIAKGHLVREIDALGGLMGKAADKTGIQFRMLNTS 80 (391)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 97999987899999999986899689997342431588656556875304399999872589999999975456530446
Q ss_pred --CC-CCC--CCCHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCCC-CCCCCCCCCCCCCCEECCCCCC
Q ss_conf --74-777--78978999866432320-0232221133201122222-2222222222210000147766
Q gi|254780283|r 53 --PG-FAT--SIRGDWLMEQMRQQAEN-FGTKIIQDLVVSVDLDRHP-FLVETQSGDLWHADAVVIATGS 115 (321)
Q Consensus 53 --~g-~~~--~~~~~~l~~~~~~~~~~-~~v~~~~~~V~~i~~~~~~-~~v~~~~g~~~~a~~lIiAtG~ 115 (321)
|. ... .++...+..++++.++. -+++++.++|..+..+++. .-|.+.+|..+.++.+|+|||.
T Consensus 81 kGpAv~a~R~q~Dr~~y~~~~~~~l~~~~nl~i~~~eV~~l~~~~~~v~GV~~~~g~~i~a~~vIltTGT 150 (391)
T pfam01134 81 KGPAVRALRAQVDRDLYSKEMTETLENHPNLTLIQGEVTDLIPENGKVKGVVTEDGEEYKAKAVVIATGT 150 (391)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCEEEECCCCEEEEEEECCCCEEECCEEEEECCC
T ss_conf 7876668589987999999999999759993999546400302699599999379978514459993156
No 104
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.58 E-value=2.9e-14 Score=101.88 Aligned_cols=113 Identities=26% Similarity=0.408 Sum_probs=71.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCE-------EEEEC---------------------------
Q ss_conf 767519999897779999999998699599996788-7756-------87501---------------------------
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQ-------LMITE--------------------------- 47 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~-------l~~~~--------------------------- 47 (321)
+.+|||+|||+|.|||+||+++++.|.+|+|+||.. .||. +....
T Consensus 58 ~~~yDVvVVG~G~AGl~AAi~Aae~Ga~VvllEK~~~~GG~s~~s~g~~~~~~t~~q~~~G~~ds~~~~~~d~~~~~~~~ 137 (506)
T PRK06481 58 KDKYDIVIVGAGGAGMTAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGT 137 (506)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHCCCEECCCCHHHHHHCCCCCHHHHHHHHHHHCCCC
T ss_conf 69846799898899999999999889978999689999951888558845269999997389999999999999734888
Q ss_pred ------------------CCC-------CC--CC-CC-------CC--CCHHHHHHHHHHHHHHCCCCCCCE-EEEECCC
Q ss_conf ------------------007-------87--74-77-------77--897899986643232002322211-3320112
Q gi|254780283|r 48 ------------------SIE-------NY--PG-FA-------TS--IRGDWLMEQMRQQAENFGTKIIQD-LVVSVDL 89 (321)
Q Consensus 48 ------------------~i~-------n~--~g-~~-------~~--~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~ 89 (321)
+++ +. .+ +. .. -.+..+++.+.+.+.+.+++++.+ .++.+..
T Consensus 138 ~d~~l~~~~~~~s~~~idWl~~~G~~~~~~~~~g~~~~~~~~~~~~g~~~g~~lv~~l~~~~~~~gv~i~~~t~~~~L~~ 217 (506)
T PRK06481 138 NDKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITE 217 (506)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEECCEEEEEEE
T ss_conf 88999999998389999999975984666766788776703434887647999999999999877987998778323230
Q ss_pred CCCCC---CCCCCCCC--CCCCCEECCCCCC
Q ss_conf 22222---22222222--2210000147766
Q gi|254780283|r 90 DRHPF---LVETQSGD--LWHADAVVIATGS 115 (321)
Q Consensus 90 ~~~~~---~v~~~~g~--~~~a~~lIiAtG~ 115 (321)
+++.. .+...+++ .+.+|.||||||.
T Consensus 218 ~dG~V~GV~~~~~~g~~~~i~akaVILATGG 248 (506)
T PRK06481 218 KDGKVTGVKVKINGKETKTISSKAVVVTTGG 248 (506)
T ss_pred CCCCEEEEEEEECCCEEEEEECCEEEECCCC
T ss_conf 5893789999968984999973569997788
No 105
>PRK07395 L-aspartate oxidase; Provisional
Probab=99.55 E-value=1.3e-13 Score=98.01 Aligned_cols=113 Identities=21% Similarity=0.298 Sum_probs=66.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC-CE-------EEEE------C---------------------
Q ss_conf 76751999989777999999999869959999678877-56-------8750------1---------------------
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG-GQ-------LMIT------E--------------------- 47 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~G-G~-------l~~~------~--------------------- 47 (321)
+++|||+|||+|.|||+||+.+++ +.+|+|++|..+. |. +... .
T Consensus 8 ~~~yDVlVIGsG~AGl~AAi~~~~-~~~V~li~K~~~~~g~s~~a~GGi~a~~~~~Ds~e~h~~Dt~kaG~gl~d~~~v~ 86 (556)
T PRK07395 8 PSQFDVLVVGSGAAGLYAALCLPS-HYRVGLITKDTLKTSASDWAQGGIAAAIAPDDSPKLHYEDTLKAGAGLCDPEAVR 86 (556)
T ss_pred CCCCCEEEECCCHHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHCCCCEEECCCCCCHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 865978999963999999997235-9988999899999962667636051727999999999999999558888899999
Q ss_pred -----------CCC--CC--------------CCC-------CCCCCHHHHHHHHHHHHHHC-CCCCCCEE-EEECCCC-
Q ss_conf -----------007--87--------------747-------77789789998664323200-23222113-3201122-
Q gi|254780283|r 48 -----------SIE--NY--------------PGF-------ATSIRGDWLMEQMRQQAENF-GTKIIQDL-VVSVDLD- 90 (321)
Q Consensus 48 -----------~i~--n~--------------~g~-------~~~~~~~~l~~~~~~~~~~~-~v~~~~~~-V~~i~~~- 90 (321)
++. .+ .|+ ....+|..++..+.+++.+. +++++.+. ++.+-.+
T Consensus 87 ~l~~~a~~~i~~L~~~Gv~f~r~~~~~~~~~~gghs~~R~~~~~d~tG~~i~~~L~~~~~~~~~I~i~~~~~~~~Ll~~~ 166 (556)
T PRK07395 87 FLVEQAPEAIASLVELGVAFDRHGQHLALTLEAAHSRPRVLHAADTTGRAIVTTLTEQVLERPNIEIISQALALDLWLEP 166 (556)
T ss_pred HHHHHHHHHHHHHHHCCCCCEECCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEEC
T ss_conf 99999999999999769970557994400121686666124457775589999999999967995698889999999955
Q ss_pred -CC---CCCCCCCCC--CCCCCCEECCCCCCCC
Q ss_conf -22---222222222--2221000014776642
Q gi|254780283|r 91 -RH---PFLVETQSG--DLWHADAVVIATGSEV 117 (321)
Q Consensus 91 -~~---~~~v~~~~g--~~~~a~~lIiAtG~~~ 117 (321)
++ ...+ ..+| ..+.++.||+|||...
T Consensus 167 ~~g~v~Gv~~-~~~g~~~~i~AkaVILATGG~g 198 (556)
T PRK07395 167 ETGRCQGISL-LYQGQITWLRAGAVILATGGGG 198 (556)
T ss_pred CCCEEEEEEE-EECCCEEEEECCEEEECCCCCC
T ss_conf 8987999999-9899699997898998999871
No 106
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=99.54 E-value=5.1e-13 Score=94.62 Aligned_cols=39 Identities=38% Similarity=0.528 Sum_probs=36.0
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 987675199998977799999999986995999967887
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL 39 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~ 39 (321)
|..+++||+|||||.|||.||++++..|++|+|+||..+
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 532116989987848889999999966995799972368
No 107
>PRK09077 L-aspartate oxidase; Provisional
Probab=99.54 E-value=1.3e-13 Score=97.97 Aligned_cols=36 Identities=36% Similarity=0.565 Sum_probs=32.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 7675199998977799999999986995999967887
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL 39 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~ 39 (321)
.+++||+|||+|.|||.||++++.. .+|+|++|..+
T Consensus 6 ~~~~DVlVIGsG~AGl~AAi~a~~~-~~V~lv~K~~~ 41 (535)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RKVAVLSKGPL 41 (535)
T ss_pred CCCCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCC
T ss_conf 7628989999539999999974038-98899978899
No 108
>PRK08071 L-aspartate oxidase; Provisional
Probab=99.52 E-value=4.3e-13 Score=95.05 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=29.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 75199998977799999999986995999967887
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL 39 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~ 39 (321)
..||+|||+|.|||+||+++++. .+|+|++|...
T Consensus 3 ~~DVlVIGsG~AGl~AA~~~~~~-~~V~vv~K~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALRVAKEICHE-KNVIIITKKTK 36 (510)
T ss_pred CCCEEEECCCHHHHHHHHHHCCC-CCEEEEECCCC
T ss_conf 79999999659999999983658-98799979899
No 109
>PRK07512 L-aspartate oxidase; Provisional
Probab=99.50 E-value=3.7e-13 Score=95.43 Aligned_cols=114 Identities=19% Similarity=0.282 Sum_probs=66.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--CCE-------EEEE-C-----------------------
Q ss_conf 987675199998977799999999986995999967887--756-------8750-1-----------------------
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL--GGQ-------LMIT-E----------------------- 47 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~--GG~-------l~~~-~----------------------- 47 (321)
|....+||+|||+|.|||+||++++.. +++|+++... |+. +... .
T Consensus 5 ~~~~~tDVlVIGsG~AGL~AAl~~a~~--~v~vi~k~~~~~g~ss~~AqGGi~a~~~~~Ds~e~h~~Dtl~aG~gl~d~~ 82 (507)
T PRK07512 5 LDDLTGRPVIVGGGLAGLMTALKLAPR--PVVLLSRAPLGEGASSAWAQGGIAAALGPDDSPALHAADTLAAGAGLCDEA 82 (507)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHCCC--CEEEEEECCCCCCCCHHHHCCCEEEECCCCCCHHHHHHHHHHHCCCCCCHH
T ss_conf 665369989999669999999983307--839999058899962667524514606999999999999999647878899
Q ss_pred --------------CCCC--CC---------------CCC--------CCCCHHHHHHHHHHHHHHC-CCCCCCE-EEEE
Q ss_conf --------------0078--77---------------477--------7789789998664323200-2322211-3320
Q gi|254780283|r 48 --------------SIEN--YP---------------GFA--------TSIRGDWLMEQMRQQAENF-GTKIIQD-LVVS 86 (321)
Q Consensus 48 --------------~i~n--~~---------------g~~--------~~~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~ 86 (321)
++.+ +| |+. ...+|.+++..+.+++.+. +++++.+ .++.
T Consensus 83 ~v~~l~~~a~~~i~~L~~~Gv~F~r~~~G~~~~~~~ggHs~~R~~~~~gd~tG~~i~~~L~~~~~~~~~I~i~~~~~~~~ 162 (507)
T PRK07512 83 VARRIAAEAPAAIEDLLRLGVPFDRDADGRLALGLEAAHSRRRIVHVGGDGAGAAIMRALIAAVRATPSITVLEGAEARR 162 (507)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_conf 99999998999999999809936447887511456655678727874588743699999999998279944999899888
Q ss_pred CCCCCCCCC-C-CCCCC--CCCCCCEECCCCCCC
Q ss_conf 112222222-2-22222--222100001477664
Q gi|254780283|r 87 VDLDRHPFL-V-ETQSG--DLWHADAVVIATGSE 116 (321)
Q Consensus 87 i~~~~~~~~-v-~~~~g--~~~~a~~lIiAtG~~ 116 (321)
+-.+++... + ...++ ..+.+++||||||..
T Consensus 163 Ll~~~g~v~Gv~~~~~g~~~~i~A~aVILATGG~ 196 (507)
T PRK07512 163 LLVEDGAVAGVLLATAGGPVVLPARAVVLATGGI 196 (507)
T ss_pred EEECCCEEEEEEEECCCCEEEEEECEEEECCCCC
T ss_conf 7753880789999738988999828699888977
No 110
>PRK06854 adenylylsulfate reductase; Validated
Probab=99.48 E-value=7e-13 Score=93.78 Aligned_cols=38 Identities=39% Similarity=0.532 Sum_probs=33.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCCEEEEECCCCC
Q ss_conf 767519999897779999999998--69959999678877
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAAR--AMLKPVIIAGSDLG 40 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r--~g~~v~iie~~~~G 40 (321)
..++||+|||+|.|||+||+++++ .+++|+|++|..++
T Consensus 9 ~~~tDVLVIGsG~AGL~AAl~a~e~~~~~~V~lvsK~~~~ 48 (610)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAAYWAPGLKVLLVEKANID 48 (610)
T ss_pred EEECCEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 8876999999769999999999877899979999899999
No 111
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=99.47 E-value=5.3e-13 Score=94.48 Aligned_cols=117 Identities=16% Similarity=0.237 Sum_probs=80.4
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC---C------EEE---E----------------------E
Q ss_conf 9876751999989777999999999869959999678877---5------687---5----------------------0
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG---G------QLM---I----------------------T 46 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~G---G------~l~---~----------------------~ 46 (321)
|+.+++||+||||||+|+++|..|++.|++|+|+|+..+. . +.+ + .
T Consensus 1 M~~~~~DV~IvG~G~vGl~lAl~La~~G~~V~viE~~~~~~~~~~~~~d~R~~al~~~s~~~L~~lGvw~~~~~~~~~~~ 80 (391)
T PRK08020 1 MTNQPTEIAIVGGGMVGGALALGLAQHGFSVAVIEHAAPAPFVADSQPDVRISAISAASVALLKGLGVWDAVQAMRCHPY 80 (391)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCE
T ss_conf 99999848999936999999999986699789994899876665579873389878899999998888487786256871
Q ss_pred CCC--CCCCC----C-------C---CCCCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 100--78774----7-------7---7789789998664323200-2322211-33201122222222222222221000
Q gi|254780283|r 47 ESI--ENYPG----F-------A---TSIRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADA 108 (321)
Q Consensus 47 ~~i--~n~~g----~-------~---~~~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~ 108 (321)
..+ .+..+ | + --++...+...+.+.++.. +++++.+ +++.++.+++...++.++|+++++|.
T Consensus 81 ~~~~~~~~~~~~~~f~~~~~~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~~~v~l~~g~~i~a~l 160 (391)
T PRK08020 81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQQALWQALEAHPNVTLRVPASLIALHRHDDGWELELADGETIQAKL 160 (391)
T ss_pred EEEEEECCCCCEEEECHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEECCCCEEEECE
T ss_conf 48986127885587254432897540121269999999999983899699958802688974986899948999998379
Q ss_pred ECCCCCCCC
Q ss_conf 014776642
Q gi|254780283|r 109 VVIATGSEV 117 (321)
Q Consensus 109 lIiAtG~~~ 117 (321)
||.|-|...
T Consensus 161 vIgADG~~S 169 (391)
T PRK08020 161 VIGADGANS 169 (391)
T ss_pred EEEECCCCC
T ss_conf 999079970
No 112
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.45 E-value=5.4e-13 Score=94.47 Aligned_cols=117 Identities=26% Similarity=0.280 Sum_probs=79.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC--E---EEE---------------------ECC--CCC-
Q ss_conf 98767519999897779999999998699599996788775--6---875---------------------010--078-
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG--Q---LMI---------------------TES--IEN- 51 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG--~---l~~---------------------~~~--i~n- 51 (321)
|++++|||+||||||+|+++|+.|++.|++++|+|+...-. + +.. ... +.+
T Consensus 1 M~~~~~DV~IvGaGp~Gl~lAl~La~~G~~v~lie~~~~~~d~Ra~al~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~d~ 80 (386)
T PRK07494 1 MEKEHTDIAVSGGGPAGLAAAIALASAGASVALVAPAPPYADLRTTALLGPSIRFLERLGVWARLAPHAAPLQSMRIVDA 80 (386)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEEC
T ss_conf 99788868999906899999999987899889995799888886799868999999988987888751485226999968
Q ss_pred ------CC--CCC----------CCCCHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf ------77--477----------77897899986643232002-322211332011222222222222222210000147
Q gi|254780283|r 52 ------YP--GFA----------TSIRGDWLMEQMRQQAENFG-TKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIA 112 (321)
Q Consensus 52 ------~~--g~~----------~~~~~~~l~~~~~~~~~~~~-v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiA 112 (321)
.+ .|. -.++...+...+.+.+.+.+ +.....+++.+..+++..+|++++|+++++|.||-|
T Consensus 81 ~~~~~~~~~~~f~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~~i~a~llIgA 160 (386)
T PRK07494 81 TGRLIRAPEVRFRASEIGEDAFGYNIPNWLLNRALEARAAELPNIDRFDDEAESVRPRGDEVTVTLADGTTLSARLVVAA 160 (386)
T ss_pred CCCCCCCCCCCCCHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCEEEEEECCCCEEEEEEEEEE
T ss_conf 98511376410353224776632101269999999999971899799777068999669848999789969998699990
Q ss_pred CCCCC
Q ss_conf 76642
Q gi|254780283|r 113 TGSEV 117 (321)
Q Consensus 113 tG~~~ 117 (321)
-|...
T Consensus 161 DG~~S 165 (386)
T PRK07494 161 DGRNS 165 (386)
T ss_pred CCCCC
T ss_conf 58887
No 113
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.45 E-value=3.1e-13 Score=95.86 Aligned_cols=112 Identities=22% Similarity=0.341 Sum_probs=77.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE---------E----EEEC---------------CC------
Q ss_conf 675199998977799999999986995999967887756---------8----7501---------------00------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQ---------L----MITE---------------SI------ 49 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~---------l----~~~~---------------~i------ 49 (321)
=+|||+|||||..|+++|++|+++|.+|+|+|+..+++. + +... .+
T Consensus 2 ~r~DVvVIGaGi~G~s~A~~La~~G~~V~vle~~~~~~~~gss~g~~~~~r~~~~~~~~~~~l~~~s~~~~~~l~~~~g~ 81 (377)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARAGLRVLGIDRFMPPHQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWRELERETGE 81 (377)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 50489999952999999999997899599992899886546676642066764567877899999999999999987497
Q ss_pred ----------------------------CC--------------CCCCCC-------------CCCHHHHHHHHHHHHHH
Q ss_conf ----------------------------78--------------774777-------------78978999866432320
Q gi|254780283|r 50 ----------------------------EN--------------YPGFAT-------------SIRGDWLMEQMRQQAEN 74 (321)
Q Consensus 50 ----------------------------~n--------------~~g~~~-------------~~~~~~l~~~~~~~~~~ 74 (321)
++ +|++.. .+.+..++..+.+.+.+
T Consensus 82 ~~~~~~G~l~~a~~~~~~~~~~~~~~~~~G~~~e~l~~~e~~~~~P~l~~~~~~~g~~~p~~G~v~p~~~~~al~~~a~~ 161 (377)
T PRK11259 82 PLFVQTGVLNLGPADSAFLANVARSARQHGLPHEVLDAAEIRRRWPEFRVPDNYIALFEPDSGFLRPELAIKAHLRLARE 161 (377)
T ss_pred CEEEEECCEEECCCHHHHHHHHHHHHHHCCCCCEEECHHHHHHHCCCCCCCCCEEEEEECCCCEECHHHHHHHHHHHHHH
T ss_conf 52875074897387799999999999976998099589999986776578987799995898267499999999999997
Q ss_pred CCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 02322211-3320112222222222222222100001477664
Q gi|254780283|r 75 FGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 75 ~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
.|++++.+ .|+.++.+++.++|+|++| ++++++||+|+|+.
T Consensus 162 ~G~~i~~~~~V~~i~~~~~~v~V~T~~G-~i~A~~VV~AaGaw 203 (377)
T PRK11259 162 AGAELLFNEPVTAIEHDDDGVTVTTADG-TYSAKKLVVSAGTW 203 (377)
T ss_pred CCCCEEECEEEEEEEECCCEEEEEECCC-EEECCEEEECCCHH
T ss_conf 4996581348886787499899980894-79979799975651
No 114
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=99.43 E-value=1.4e-12 Score=92.08 Aligned_cols=240 Identities=24% Similarity=0.331 Sum_probs=130.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-C----CCCEEEEECCCCCC--CC------------------------
Q ss_conf 51999989777999999999869959999678-8----77568750100787--74------------------------
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-D----LGGQLMITESIENY--PG------------------------ 54 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~----~GG~l~~~~~i~n~--~g------------------------ 54 (321)
|||+||||||+|=+||..|+|.|.+++|+||+ . +|| --|...|..| |-
T Consensus 1 ydV~viGGGPsGA~AAe~LA~~G~~tiLlER~l~~~KPCGG-AIPp~li~EFdiP~~li~~r~~~~~miSP~Gq~~~v~~ 79 (408)
T TIGR02023 1 YDVAVIGGGPSGAAAAETLARAGIETILLERALSRIKPCGG-AIPPCLIEEFDIPDDLIDRRVRKARMISPSGQEIAVEI 79 (408)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCEEEEEEHHHCCCCCCCC-CCCHHHCCCCCCCHHHHHHHHCEEEEECCCCCCEECCC
T ss_conf 96789816850689999998649748863024326588888-66511012357888899732006467777886100242
Q ss_pred ---CCC-----C-CCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC----CCCCCCC--CC--------CCCCCCEECC
Q ss_conf ---777-----7-8978999866432320023222113320112222----2222222--22--------2221000014
Q gi|254780283|r 55 ---FAT-----S-IRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRH----PFLVETQ--SG--------DLWHADAVVI 111 (321)
Q Consensus 55 ---~~~-----~-~~~~~l~~~~~~~~~~~~v~~~~~~V~~i~~~~~----~~~v~~~--~g--------~~~~a~~lIi 111 (321)
+|- + +..+.|=.+||+-+.+.|.+++++.+.+++.+.+ .+++... +| .+.+++.||=
T Consensus 80 ~~~~P~~~~yVGMVrREvFD~~LReRA~kaGAe~~~g~f~~~~~d~~GWds~~~~~~~~~~G~k~ag~~~~~v~~~~VIG 159 (408)
T TIGR02023 80 KVDIPVEDGYVGMVRREVFDEYLRERAQKAGAELIEGLFKKLERDEDGWDSRVTLQYREKDGKKEAGEEKKSVEADVVIG 159 (408)
T ss_pred EEECCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEE
T ss_conf 02436588667775514415789999876214766567552015677775525899876777512567777378988760
Q ss_pred CCCCCCE----EEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7766420----246527743320210121111111112210000102556543101210133322234434332211112
Q gi|254780283|r 112 ATGSEVK----WLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKIL 187 (321)
Q Consensus 112 AtG~~~~----~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~~~~~ 187 (321)
|=|++.+ .++.|.-. . .|.-++ +.++.+...
T Consensus 160 ADGA~S~vAR~~~~~~~~~---------------------------------~----------~viA~q--Eri~~p~~~ 194 (408)
T TIGR02023 160 ADGANSKVARKELGLPDNL---------------------------------P----------KVIAYQ--ERIKLPDES 194 (408)
T ss_pred CCCCCCHHHHHHCCCCCCH---------------------------------H----------HEEEHH--HEECCCCCC
T ss_conf 4478865889718758860---------------------------------2----------302011--200488865
Q ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH--------HHCCC
Q ss_conf 1122355443322223112114864333444443331420321000001122221112322356567--------74256
Q gi|254780283|r 188 QEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKI--------FRHQL 259 (321)
Q Consensus 188 ~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~--------~~~~~ 259 (321)
... .-+...+++++..|. ...-.+ + +. .+|++-+++|..|.... +....
T Consensus 195 ~~~-y~e~~~d~~~~g~VS--------PDFYgW---~-FP----------k~dH~avG~Gt~P~h~~d~K~~~~~lr~~~ 251 (408)
T TIGR02023 195 KMK-YYEELADVYYDGEVS--------PDFYGW---V-FP----------KGDHIAVGTGTEPTHGFDIKQLQAALRRRA 251 (408)
T ss_pred CCC-CCCCEEEEEECCEEC--------CCCCCC---C-CC----------CCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf 657-788779999888048--------642302---0-68----------877788832788564278999999999873
Q ss_pred ---------CEECCCCEEEECCCCCCCCCCEEEECCCCCCCH----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------180699799008885547898289701268844----5678999979999999999997
Q gi|254780283|r 260 ---------KMTNTNYIWTMPDSTATSIPGIFAAGDVADERY----RQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 260 ---------~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~----~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
-+.|---|+-.+....++-.+|-.+||.++..- .=+.-||-+|++||..+.++|.
T Consensus 252 GD~L~~~~tir~EaapIPm~Pr~~~~~~r~~~L~GDAAG~V~~~SGEGIY~Am~sG~~aA~a~~E~l~ 319 (408)
T TIGR02023 252 GDKLDGGKTIRREAAPIPMKPRPRWDSGRDVVLVGDAAGLVTPASGEGIYFAMKSGKMAAEAIVEALQ 319 (408)
T ss_pred HHHHHCCCCCHHCCCCCCCCCCCCCCCCCCEEEECCCCCCEECCCCCHHHHHHHCCHHHHHHHHHHHH
T ss_conf 02656183010026767755441000588669981346633443761688876310789999999984
No 115
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=99.40 E-value=1e-12 Score=92.89 Aligned_cols=36 Identities=28% Similarity=0.455 Sum_probs=33.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE
Q ss_conf 199998977799999999986995999967887756
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQ 42 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~ 42 (321)
||+|||||.+|+++|++|++.|++|+|+|++.+++.
T Consensus 1 dv~IIGaGi~Gls~A~~La~~G~~V~vie~~~~~~g 36 (309)
T pfam01266 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLASG 36 (309)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 999999279999999999978995999949998875
No 116
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.39 E-value=3.2e-12 Score=89.95 Aligned_cols=117 Identities=19% Similarity=0.296 Sum_probs=78.4
Q ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC--------CCEEEE-------------------------E
Q ss_conf 98767-5199998977799999999986995999967887--------756875-------------------------0
Q gi|254780283|r 1 MASHD-SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL--------GGQLMI-------------------------T 46 (321)
Q Consensus 1 M~~~~-~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~--------GG~l~~-------------------------~ 46 (321)
|..+. |||+||||||+|+++|+.|++.|++|+|+|+.+. ..+.+. .
T Consensus 1 m~~~~~~DV~IvGaGp~Gl~lA~~L~~~G~~v~liE~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~p~ 80 (392)
T PRK08773 1 MSRRSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARVQPY 80 (392)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCE
T ss_conf 99999998899990699999999998669978999178987555688873699998899999998798166775167731
Q ss_pred CCC--CCC-----CCCCC----------CCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 100--787-----74777----------7897899986643232002322211-33201122222222222222221000
Q gi|254780283|r 47 ESI--ENY-----PGFAT----------SIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADA 108 (321)
Q Consensus 47 ~~i--~n~-----~g~~~----------~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~ 108 (321)
..+ ++- ..|.. -+....+.+.+.+.+.+.++++..+ +++.+..+.+..++..++|++++++.
T Consensus 81 ~~~~v~d~~~~~~~~~~~~~~~~~~lg~iv~~~~l~~~L~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~dg~~i~a~l 160 (392)
T PRK08773 81 RRMRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAAVHAAGIQLHCPARVVELEQDADGVRLRLDDGSRLEAAL 160 (392)
T ss_pred EEEEEEECCCCCEEEECHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEE
T ss_conf 35899845898347536566285456532254999999999986089989748689999966985899977997999889
Q ss_pred ECCCCCCCC
Q ss_conf 014776642
Q gi|254780283|r 109 VVIATGSEV 117 (321)
Q Consensus 109 lIiAtG~~~ 117 (321)
||.|-|+..
T Consensus 161 vVgaDG~~S 169 (392)
T PRK08773 161 AIAADGAAS 169 (392)
T ss_pred EEECCCCCC
T ss_conf 998378874
No 117
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=99.38 E-value=1.8e-12 Score=91.43 Aligned_cols=114 Identities=25% Similarity=0.378 Sum_probs=74.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCE------EEE--------ECC--CCC--------CCC----
Q ss_conf 67519999897779999999998699599996788-7756------875--------010--078--------774----
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQ------LMI--------TES--IEN--------YPG---- 54 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~------l~~--------~~~--i~n--------~~g---- 54 (321)
.+|||+||||||||++||+.|++.|++|+|+|+.. +|.. +++ ... +.+ +|+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~ 81 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVA 81 (396)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCHHHHEEEEEEEEEECCCCEEE
T ss_conf 47889998978899999999985799299996578899987676667877887745552133213320269971574268
Q ss_pred CCC------CCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCC-CCCCCCEECCCCCCCC
Q ss_conf 777------7897899986643232002322211-3320112222222222222-2221000014776642
Q gi|254780283|r 55 FAT------SIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSG-DLWHADAVVIATGSEV 117 (321)
Q Consensus 55 ~~~------~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g-~~~~a~~lIiAtG~~~ 117 (321)
+.. .++...+-..+.+++.+.|.+++.+ ++..+..+++...+....+ .++++|.+|.|+|+..
T Consensus 82 ~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ak~vI~AdG~~~ 152 (396)
T COG0644 82 IEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred EECCCCCEEEEEHHHHHHHHHHHHHHHCCEEEECCEEEEEEEECCCEEEEEECCCEEEECCEEEECCCCCH
T ss_conf 74488857998889988999999998398998187889999817816999956866996189998848576
No 118
>TIGR00551 nadB L-aspartate oxidase; InterPro: IPR005288 L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbour-joining trees.; GO: 0008734 L-aspartate oxidase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=99.37 E-value=2e-11 Score=85.28 Aligned_cols=113 Identities=26% Similarity=0.413 Sum_probs=75.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CC-CCEEEEEC----------------CC----------------
Q ss_conf 6751999989777999999999869959999678-87-75687501----------------00----------------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DL-GGQLMITE----------------SI---------------- 49 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~-GG~l~~~~----------------~i---------------- 49 (321)
+++||+|||+|.|||++|+.|.+.+.+|+|+.|. +. -|--++.+ ++
T Consensus 1 ~~~dV~viGsGaAGL~aAlal~~~~~~V~v~~K~a~~~~~~s~yAQGGIAa~~~~~DdSi~~Hv~DTL~AGaG~cD~~aV 80 (546)
T TIGR00551 1 SEADVVVIGSGAAGLSAALALAEKYRDVVVISKAAEVKESASYYAQGGIAAALAETDDSIDAHVEDTLAAGAGLCDEEAV 80 (546)
T ss_pred CCCEEEEECCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCEECCCEEEECCCCCCCHHHHHHHHHHHCCCCCCHHHH
T ss_conf 96359997520899999985332686378975875555675200011266303875585687789999844678868899
Q ss_pred ----------------------CCCCC--------------------CCC-CCCHHHHHHHHHHHHH-HCCCCCCCE-EE
Q ss_conf ----------------------78774--------------------777-7897899986643232-002322211-33
Q gi|254780283|r 50 ----------------------ENYPG--------------------FAT-SIRGDWLMEQMRQQAE-NFGTKIIQD-LV 84 (321)
Q Consensus 50 ----------------------~n~~g--------------------~~~-~~~~~~l~~~~~~~~~-~~~v~~~~~-~V 84 (321)
.|.+| +.. ..+|.++...|.+++. +.+++++.+ .+
T Consensus 81 ~~v~~~~~~av~~L~~~Gv~FD~~~~gnGee~~~LtrEGgHS~~RI~HA~GDaTGr~~~~~L~~~a~~~p~~~~~~~~~A 160 (546)
T TIGR00551 81 EFVVSDAKEAVQELVEAGVSFDRNEQGNGEERLALTREGGHSYRRILHAAGDATGREVISTLLKKARSEPNVEIIEGEVA 160 (546)
T ss_pred HHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCEEECCCCEE
T ss_conf 99985368999999866922026779887443100133566777427735763248999999999743776241012144
Q ss_pred EECCCC-------CCC---CCCCCC-CC--CCCCCCEECCCCCCC
Q ss_conf 201122-------222---222222-22--222100001477664
Q gi|254780283|r 85 VSVDLD-------RHP---FLVETQ-SG--DLWHADAVVIATGSE 116 (321)
Q Consensus 85 ~~i~~~-------~~~---~~v~~~-~g--~~~~a~~lIiAtG~~ 116 (321)
..+..+ +.. ..|... ++ +.++++.||||||..
T Consensus 161 ~~l~i~dkiGlP~~g~~~G~~v~~~nK~~~e~~~a~aVvLAtGG~ 205 (546)
T TIGR00551 161 LDLLIEDKIGLPTTGRVVGVLVVDSNKETVETLHADAVVLATGGL 205 (546)
T ss_pred EEEEECCCCCCCCCCEEEEEEEECCCCCEEEEEECCEEEEECCCC
T ss_conf 444422502479888799999971678723776301000320773
No 119
>PRK06847 hypothetical protein; Provisional
Probab=99.36 E-value=4.8e-12 Score=88.90 Aligned_cols=115 Identities=24% Similarity=0.287 Sum_probs=80.7
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCCEEEEEC-------------------------CCCC
Q ss_conf 98767519999897779999999998699599996788----775687501-------------------------0078
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD----LGGQLMITE-------------------------SIEN 51 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~----~GG~l~~~~-------------------------~i~n 51 (321)
|.+- ++|+||||||+||++|+.|+|.|++++|+|+.. .|..+...+ .+++
T Consensus 1 m~~~-kkV~IVGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~~~g~gi~l~~~~~~~L~~lGl~~~i~~~~~~~~~~~~~~ 79 (375)
T PRK06847 1 MGAV-KKVLIVGGGIGGMSAAIALRKAGISVDLVEIDPEWRPYGAGITLQGNTLRALKELGVLDECLEHGFGFDGVDIFD 79 (375)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEEE
T ss_conf 9899-879999966899999999996799999990899988886089889899999998799589996078852299996
Q ss_pred ------------------CCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf ------------------7747777897899986643232002322211-332011222222222222222210000147
Q gi|254780283|r 52 ------------------YPGFATSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIA 112 (321)
Q Consensus 52 ------------------~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiA 112 (321)
+|+ ...+.-..|...+.+.+...++++..+ +++.++.+++..++.+++|+++++|.||-|
T Consensus 80 ~~G~~~~~~~~~~~~~~~~~~-~~~i~r~~L~~~L~~~~~~~~~~v~~~~~v~~i~~~~~~v~v~~~dG~~~~adllIGA 158 (375)
T PRK06847 80 PAGHLLAEVPTPRVAGDDVPG-GGGIMRPTLARILADAARASGVDVRLGTTVTAIEQDDDGVDVTFTDGTTGRYDLVVGA 158 (375)
T ss_pred CCCCEEEEECCHHHCCCCCCC-EEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEEC
T ss_conf 899889983431203566772-1277099999999998984699799665897866649858999858988998799985
Q ss_pred CCCCC
Q ss_conf 76642
Q gi|254780283|r 113 TGSEV 117 (321)
Q Consensus 113 tG~~~ 117 (321)
-|++.
T Consensus 159 DG~~S 163 (375)
T PRK06847 159 DGVYS 163 (375)
T ss_pred CCCCC
T ss_conf 78762
No 120
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=99.34 E-value=1.3e-11 Score=86.47 Aligned_cols=33 Identities=42% Similarity=0.666 Sum_probs=29.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 1999989777999999999869959999678877
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG 40 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~G 40 (321)
||+|||+|.|||++|+.|.+. .+|+|+.|...+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41 (518)
T ss_pred CEEEECCCHHHHHHHHHCCCC-CCEEEEECCCCC
T ss_conf 589988759999999737777-847999577788
No 121
>PRK07190 hypothetical protein; Provisional
Probab=99.33 E-value=1e-11 Score=86.97 Aligned_cols=123 Identities=17% Similarity=0.340 Sum_probs=83.5
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---CCEEE--EE------------CC------------C--
Q ss_conf 987675199998977799999999986995999967887---75687--50------------10------------0--
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL---GGQLM--IT------------ES------------I-- 49 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~---GG~l~--~~------------~~------------i-- 49 (321)
|+.+..||+||||||.||++|..|++.|.+++|+|+..- .++-. .. .. +
T Consensus 1 m~~~~tDVlIVGaGPvGL~lA~~La~~Gv~v~VlEr~~~~~~~~RA~~l~~rtleil~~~Gl~d~l~~~g~~~~~~~~~~ 80 (480)
T PRK07190 1 MSAQVADVVIVGAGPVGLMCAYLGQRCGINTVIVDKSDGPLEVGRADALNARTLQLLELADLFDELYPLGKPCNTSSVWA 80 (480)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEECC
T ss_conf 99886448999938899999999988799999996999999998675756899999997597899985177554126712
Q ss_pred -----CC-------CCCC--C--CCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf -----78-------7747--7--77897899986643232002322211-332011222222222222222210000147
Q gi|254780283|r 50 -----EN-------YPGF--A--TSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIA 112 (321)
Q Consensus 50 -----~n-------~~g~--~--~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiA 112 (321)
.. .++. + ..++-..+...+.+.+.+.++++..+ ++++++.+....++++++++++++++||=|
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~E~~L~~~~~~~g~~v~~g~~v~~~~~~~~~v~~~l~~ge~i~a~ylVGc 160 (480)
T PRK07190 81 DGQFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDEKLKETAAAVKRSTAIVNIEINEAGCLTTLANGERIQSRYVIGA 160 (480)
T ss_pred CCEEEECCCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEECCCCCEEEEEEEEEE
T ss_conf 88575024666433567777855851889999999999986699799152899999858935998489989988888860
Q ss_pred CCCCC---EEEEEC
Q ss_conf 76642---024652
Q gi|254780283|r 113 TGSEV---KWLRLE 123 (321)
Q Consensus 113 tG~~~---~~~~ip 123 (321)
-|++. +.++||
T Consensus 161 DGa~S~VRk~lgI~ 174 (480)
T PRK07190 161 DGSRSFVRNHFAIP 174 (480)
T ss_pred CCCCCHHHHHCCCC
T ss_conf 67761678875988
No 122
>PRK09126 hypothetical protein; Provisional
Probab=99.33 E-value=1.3e-11 Score=86.36 Aligned_cols=113 Identities=23% Similarity=0.279 Sum_probs=75.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC--------CCCEEE-EE------------------------C--CC
Q ss_conf 7519999897779999999998699599996788--------775687-50------------------------1--00
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD--------LGGQLM-IT------------------------E--SI 49 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~--------~GG~l~-~~------------------------~--~i 49 (321)
+|||+||||||+||++|..|++.|++++|+|+.. .-|+-. .. . .+
T Consensus 3 ~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~r~~al~~~s~~~L~~lG~~~~l~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDILVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEAEISPLRDAKV 82 (392)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEE
T ss_conf 89999999258999999999868998999908985334577888628986899999999878966777507674146899
Q ss_pred CCCC-----CCCC----------CCCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 7877-----4777----------789789998664323200-2322211-332011222222222222222210000147
Q gi|254780283|r 50 ENYP-----GFAT----------SIRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIA 112 (321)
Q Consensus 50 ~n~~-----g~~~----------~~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiA 112 (321)
++-. .|.. -++...+...+.+.+.+. +++++.+ +|+.+..+++..+|..+++++++++.||-|
T Consensus 83 ~~~~~~~~l~~~~~~~~~~~lg~~v~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~~~~g~~i~a~llVgA 162 (392)
T PRK09126 83 LNGRSPFALTFDARGTGADALGYLVPNHLIRRAAYEAVSQQPGIEILTGHRVKAVTHSDDGAQVTLANGRRLTARLLVAA 162 (392)
T ss_pred ECCCCCEEEEECCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEEE
T ss_conf 52887504750475567666500021999999999999858996998698889999759805999858988887799980
Q ss_pred CCCCC
Q ss_conf 76642
Q gi|254780283|r 113 TGSEV 117 (321)
Q Consensus 113 tG~~~ 117 (321)
-|+..
T Consensus 163 DG~~S 167 (392)
T PRK09126 163 DSRFS 167 (392)
T ss_pred CCCCC
T ss_conf 68886
No 123
>PRK06834 hypothetical protein; Provisional
Probab=99.32 E-value=9.4e-12 Score=87.20 Aligned_cols=113 Identities=20% Similarity=0.283 Sum_probs=79.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCCEEEEE--------------C---------CCCCCCC---
Q ss_conf 7519999897779999999998699599996788----77568750--------------1---------0078774---
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD----LGGQLMIT--------------E---------SIENYPG--- 54 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~----~GG~l~~~--------------~---------~i~n~~g--- 54 (321)
++||+||||||+||++|..|++.|.+++|+|+.. .+.+.... . ...+|.+
T Consensus 3 ~~dVlIVGaGPvGL~lA~~La~~Gi~v~viE~~~~~~~~~~RA~~l~~rt~eil~~~Gl~d~~~~~g~~~~~~~~~~~~~ 82 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRVDQELVGSRAGGLHARTLEVLDQRGIVDRFLAEGQVAQVTGFAQIRL 82 (488)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCCCCCCEEC
T ss_conf 89899989388999999999976999999968999877698484778999999998799899984265211124012025
Q ss_pred ----CCC------CCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf ----777------7897899986643232002322211-33201122222222222222221000014776642
Q gi|254780283|r 55 ----FAT------SIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV 117 (321)
Q Consensus 55 ----~~~------~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~ 117 (321)
++. .++-.++...+.+.+.++++++..+ +++++..++...++++.+++++++++||-|-|++.
T Consensus 83 ~~~~~p~~~~~~~~~~Q~~lE~iL~~~l~~~~~~v~~g~~v~~~~~~~~gV~v~~~dg~ti~a~ylVGaDGa~S 156 (488)
T PRK06834 83 DISDFPTRHNYGLALRQNHIERILAEWVGELGVPIYRGREVTGFTQDDTGVDVELSDGSTLRAQYLVGCDGGRS 156 (488)
T ss_pred CHHHCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCC
T ss_conf 67658777783788548999999999998589979808889999983996899988982798758997067674
No 124
>PRK07608 hypothetical protein; Provisional
Probab=99.32 E-value=1.3e-11 Score=86.49 Aligned_cols=114 Identities=13% Similarity=0.209 Sum_probs=73.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCC-----E---EE----------------------EEC--
Q ss_conf 67519999897779999999998699599996788----775-----6---87----------------------501--
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD----LGG-----Q---LM----------------------ITE-- 47 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~----~GG-----~---l~----------------------~~~-- 47 (321)
-+|||+||||||+||++|+.|++.|.+|+|+|+.. .++ + +. +..
T Consensus 4 m~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGv~~~l~~~~~~p~~~~ 83 (389)
T PRK07608 4 MKFDVAVVGGGLVGKSLALALAQSGLRVALLEAQPPAPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDM 83 (389)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCEEEEE
T ss_conf 99988999906899999999983799889995899876666667675178988999999998798545554326406789
Q ss_pred CCCC-------CC----CCCC---CCCHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCC
Q ss_conf 0078-------77----4777---7897899986643232002-322211332011222222222222222210000147
Q gi|254780283|r 48 SIEN-------YP----GFAT---SIRGDWLMEQMRQQAENFG-TKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIA 112 (321)
Q Consensus 48 ~i~n-------~~----g~~~---~~~~~~l~~~~~~~~~~~~-v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiA 112 (321)
.+++ +. +.+. -+....+...+.+.+...+ +.+...+++.++.+.+..++++++|++++++.||-|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~l~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgA 163 (389)
T PRK07608 84 RVYGDAHGRLHFSAYQAAVPQLAWIVESSLIERALDAALRFQGNLTWFDARAQGLDVTPDAATLTLSDGQVLEADLVVGA 163 (389)
T ss_pred EEECCCCCEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEECCCCEEEEEEEEEE
T ss_conf 99647785463463335898414441079999999999861898699887888999729917999889989996589996
Q ss_pred CCCCC
Q ss_conf 76642
Q gi|254780283|r 113 TGSEV 117 (321)
Q Consensus 113 tG~~~ 117 (321)
-|...
T Consensus 164 DG~~S 168 (389)
T PRK07608 164 DGAHS 168 (389)
T ss_pred CCCCH
T ss_conf 69976
No 125
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=99.32 E-value=8.1e-11 Score=81.75 Aligned_cols=36 Identities=33% Similarity=0.631 Sum_probs=33.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 519999897779999999998699599996788-775
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
.+|+|||+|-||||||+++...|.+|+|+||.. +||
T Consensus 410 ~rVIVVGsGlAGLSAAIeA~e~GakVVLLEKmp~lGG 446 (1167)
T PTZ00306 410 ARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGG 446 (1167)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 8689989757999999999977995799957898887
No 126
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.31 E-value=1.9e-11 Score=85.43 Aligned_cols=117 Identities=23% Similarity=0.356 Sum_probs=73.3
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-----CCEEEE-E-----------------------CCCC-
Q ss_conf 987675199998977799999999986995999967887-----756875-0-----------------------1007-
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL-----GGQLMI-T-----------------------ESIE- 50 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~-----GG~l~~-~-----------------------~~i~- 50 (321)
|+..+|||+||||||+||++|+.|++.|++++|+|+... .|+... . ..++
T Consensus 13 ~~~~d~DV~IVGaGp~Gl~lAl~La~~Gi~v~viE~~~~~~~~~~~ra~~l~~~s~~iL~~lGl~~~i~~~~~~~~~i~~ 92 (413)
T PRK07364 13 LRSLDYDVVIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAVAKGQAYALSLLSARIFEGIGVWEKILPHIGPFRQIQL 92 (413)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEE
T ss_conf 99898998999927999999999986899889991799766678873899589999999987996898861475425999
Q ss_pred ---CCCC---CC-CC---------CCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCCCCC---CCCCCCEE
Q ss_conf ---8774---77-77---------89789998664323200-2322211-3320112222222222222---22210000
Q gi|254780283|r 51 ---NYPG---FA-TS---------IRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVETQSG---DLWHADAV 109 (321)
Q Consensus 51 ---n~~g---~~-~~---------~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~~~g---~~~~a~~l 109 (321)
+.++ |. .. +....+.+.+.+.+... +++++.+ +++++..+.+...|..+.+ .++++++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~~~~~~~i~a~ll 172 (413)
T PRK07364 93 SDADFPGVVRFSPEDLGTEALGYVGEHQVLLEALQEFVQSCPNITWLCPAQVLSVEYGEHQATVTLEIAGQLQTLQSKLV 172 (413)
T ss_pred EECCCCCEEEECHHHCCCCCCEEEHHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCEEEEEEECCCCEEEEEEEEE
T ss_conf 81898746751655438875423300299999999999848994898287799999769836999982991389985689
Q ss_pred CCCCCCCC
Q ss_conf 14776642
Q gi|254780283|r 110 VIATGSEV 117 (321)
Q Consensus 110 IiAtG~~~ 117 (321)
|-|-|+..
T Consensus 173 IgaDG~~S 180 (413)
T PRK07364 173 VAADGARS 180 (413)
T ss_pred EEECCCCC
T ss_conf 99318885
No 127
>PRK07045 putative monooxygenase; Reviewed
Probab=99.30 E-value=2.4e-11 Score=84.79 Aligned_cols=116 Identities=16% Similarity=0.217 Sum_probs=73.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCCEEEE-EC-------------------------CC-
Q ss_conf 98767519999897779999999998699599996788----7756875-01-------------------------00-
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD----LGGQLMI-TE-------------------------SI- 49 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~----~GG~l~~-~~-------------------------~i- 49 (321)
|+++..||+||||||+||++|+.|+|.|++++|+|+.. .++.... .. .+
T Consensus 1 m~~~~~dVlIvGaG~aGl~lA~~L~r~G~~v~v~E~~~~~~~~~~~~~l~p~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 80 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY 80 (388)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCEEEEEEEE
T ss_conf 99899858999928899999999986799899990899877778634889999999998869689986078514579995
Q ss_pred C--------CCCC-----CCCCCCHHHHHHHHHHHHHH-CCCCCCCE-EEEECCCCCCCC--CCCCCCCCCCCCCEECCC
Q ss_conf 7--------8774-----77778978999866432320-02322211-332011222222--222222222210000147
Q gi|254780283|r 50 E--------NYPG-----FATSIRGDWLMEQMRQQAEN-FGTKIIQD-LVVSVDLDRHPF--LVETQSGDLWHADAVVIA 112 (321)
Q Consensus 50 ~--------n~~g-----~~~~~~~~~l~~~~~~~~~~-~~v~~~~~-~V~~i~~~~~~~--~v~~~~g~~~~a~~lIiA 112 (321)
+ ++.. +...++...+...+.+.+.. -++++..+ +++.+..+.+.. .+.+++|+++++|.||-|
T Consensus 81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~v~~v~~~~~~~~~~v~~~dG~~~~adlvIGA 160 (388)
T PRK07045 81 HDKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGA 160 (388)
T ss_pred CCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEEEECCCCEEEEEEEEEC
T ss_conf 08957987445556666838983099999999999745898199979899999984992599999589979974099995
Q ss_pred CCCC
Q ss_conf 7664
Q gi|254780283|r 113 TGSE 116 (321)
Q Consensus 113 tG~~ 116 (321)
-|.+
T Consensus 161 DG~~ 164 (388)
T PRK07045 161 DGAR 164 (388)
T ss_pred CCCC
T ss_conf 6886
No 128
>TIGR01790 carotene-cycl lycopene cyclase family protein; InterPro: IPR010108 Carotenoids have important functions in photosynthesis, nutrition, and protection against oxidative damage, and are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. The final steps in the biosynthesis of carotenoids usually involve the cyclization of lycopene by one of two pathways: the formation of a beta ring by beta-cyclase, or an epsilon ring by epsilon-cyclase. Epsilon-cyclase adds only one ring, forming the monocyclic delta-carotene, whereas beta-cyclase introduces a ring at both ends of lycopene to form the bicyclic beta-carotene . Both enzymes show high sequence similarities, and may have evolved from the same ancestor . This family includes lycopene beta-and epsilion-cyclases, which are involved in the biosynthesis of carotenoids in bacteria and plants, and the related capsanthin capsorubin synthase (Ccs) from plants, which converts antheraxanthin or violaxanthin into capsanthin or capsorubin by a mechanism similar to lycopene cyclization.; GO: 0016705 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process.
Probab=99.29 E-value=9.3e-12 Score=87.24 Aligned_cols=125 Identities=25% Similarity=0.293 Sum_probs=92.4
Q ss_pred EEEEECCCHHHHHHHHHHH--HCCCCEEEEEC-CC-CCCEEEEECC---------------C-CCCCC-----CCC----
Q ss_conf 1999989777999999999--86995999967-88-7756875010---------------0-78774-----777----
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAA--RAMLKPVIIAG-SD-LGGQLMITES---------------I-ENYPG-----FAT---- 57 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~--r~g~~v~iie~-~~-~GG~l~~~~~---------------i-~n~~g-----~~~---- 57 (321)
|++||||||||+.-|.+|+ +.|++|.+||. .. .+|..++.-+ + +.|++ |+.
T Consensus 1 D~~ViGgGpAG~aiA~~l~~a~~gL~V~~i~p~p~f~~~~~tyg~w~~dl~~~~hawl~~l~~~~W~~~~~y~~~~~~~~ 80 (419)
T TIGR01790 1 DLIVIGGGPAGLAIALELADARPGLRVQLIEPAPPFLPGNNTYGVWDDDLSDLGHAWLADLVEHRWSDAYEYRFPEEPIK 80 (419)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHH
T ss_conf 97887477578999999997505871898678887677687442122223278999999884163898068838734301
Q ss_pred ------CCCHHHHHHHHHHHHHHC-CCCCCCEEEEECCCC-CCCCCCCCCCCCCCCCCEECCCCCCCC-------EEEEE
Q ss_conf ------789789998664323200-232221133201122-222222222222221000014776642-------02465
Q gi|254780283|r 58 ------SIRGDWLMEQMRQQAENF-GTKIIQDLVVSVDLD-RHPFLVETQSGDLWHADAVVIATGSEV-------KWLRL 122 (321)
Q Consensus 58 ------~~~~~~l~~~~~~~~~~~-~v~~~~~~V~~i~~~-~~~~~v~~~~g~~~~a~~lIiAtG~~~-------~~~~i 122 (321)
.++...|.+.+.+...+- |+.++.++|.+|..+ ...-.|.+++|.++.++.||-|+|..| +.+.=
T Consensus 81 L~~~Y~~~~~~~L~~~l~~~~~~~sG~~~~~~ka~~~~~~~~~~~~v~~~~g~~i~Ar~V~Da~G~~~G~l~~~~~~~~~ 160 (419)
T TIGR01790 81 LGRAYGSVDRAQLHEELLQKCPEGSGVLWLEAKAIKVEADAVSLSLVECAGGQRIQARLVIDARGFKPGKLVQYEKASLA 160 (419)
T ss_pred CCCCCEEECHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHCCCCEEECCCCEEEEEEEEEECCCCCCCCEECCCCCCCC
T ss_conf 05665000158999999986200376133013566665440551114428973784007883257776510112566764
Q ss_pred CCCCCCCEE
Q ss_conf 277433202
Q gi|254780283|r 123 ESEKKFQGF 131 (321)
Q Consensus 123 pG~~~~~~~ 131 (321)
.|.+.+.|.
T Consensus 161 ~g~Q~ayG~ 169 (419)
T TIGR01790 161 VGYQAAYGV 169 (419)
T ss_pred CEEEEEEEE
T ss_conf 212131327
No 129
>PRK08163 salicylate hydroxylase; Provisional
Probab=99.28 E-value=2e-11 Score=85.23 Aligned_cols=116 Identities=22% Similarity=0.365 Sum_probs=78.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCCEEEEEC-------------------------CCCC
Q ss_conf 98767519999897779999999998699599996788----775687501-------------------------0078
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD----LGGQLMITE-------------------------SIEN 51 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~----~GG~l~~~~-------------------------~i~n 51 (321)
|+ +..+|+|||||||||++|+.|+|.|++++|+|+.. .|..+...+ .+++
T Consensus 1 M~-~~~~V~IVGaGiaGL~lA~~L~r~Gi~v~V~Er~~~~~~~G~gi~l~pn~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 79 (396)
T PRK08163 1 MT-HVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGEIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMD 79 (396)
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCCCEEEEE
T ss_conf 98-99849998978899999999997899999991799888787188989899999998799089983166766259997
Q ss_pred C---------C---------CCCC-CCCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 7---------7---------4777-789789998664323200-2322211-3320112222222222222222100001
Q gi|254780283|r 52 Y---------P---------GFAT-SIRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVV 110 (321)
Q Consensus 52 ~---------~---------g~~~-~~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lI 110 (321)
. + |.|. .+...+|...+.+.+... ++++..+ ++++++.+++..+|.+++|+++++|.||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~g~p~~~i~R~~L~~~Ll~~~~~~~~v~i~~~~~v~~v~~~~~~v~v~~~dG~~~~adlvV 159 (396)
T PRK08163 80 AVDAEEVVRIPTGQAFRDRFGNPYAVIHRADIHLSLLEAVQDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALI 159 (396)
T ss_pred CCCCCEEEEECCCCHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEE
T ss_conf 68885888504760456624997268779999999999998569817870999999995399799998899899876999
Q ss_pred CCCCCCC
Q ss_conf 4776642
Q gi|254780283|r 111 IATGSEV 117 (321)
Q Consensus 111 iAtG~~~ 117 (321)
-|-|.+.
T Consensus 160 GADG~~S 166 (396)
T PRK08163 160 GCDGVKS 166 (396)
T ss_pred ECCCCCC
T ss_conf 6488773
No 130
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=99.28 E-value=8.5e-12 Score=87.46 Aligned_cols=41 Identities=39% Similarity=0.619 Sum_probs=38.3
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 98767519999897779999999998699599996788-775
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
|.+.++||||||+|.|||+||+++++.|.+|+|+||.. +||
T Consensus 1 ~~tie~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG 42 (567)
T PRK12842 1 MNELSCDVLVIGSGAAGLSAAITARKLGLDVVVLEKEPVFGG 42 (567)
T ss_pred CCCCEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 987305969989688999999999987990899977998885
No 131
>PRK04965 nitric oxide reductase; Provisional
Probab=99.26 E-value=2.6e-11 Score=84.68 Aligned_cols=101 Identities=15% Similarity=0.255 Sum_probs=83.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 6751999989777999999999869959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
..++|+|||||+-|+.+|..|++.|.+|+|+|..+. +++ . .-.++..+.+++.+++.|++++.+
T Consensus 140 ~~krvvVIGgG~IG~E~A~~L~~~G~~Vtvve~~~~---ll~--------~----~l~~~~~~~l~~~l~~~GV~~~~~~ 204 (378)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAAS---LLA--------S----LMPPEVSSRLQHRLTEMGVHLLLKS 204 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC---CCC--------C----CCCHHHHHHHHHHHHHCCEEEEECC
T ss_conf 497899989838899999999967988999766674---422--------1----1789999999999997890999698
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf 3320112222222222222222100001477664202
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
.|.++...++...|.+++|+++.+|.+|+|+|..|+.
T Consensus 205 ~v~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~Gv~Pnt 241 (378)
T PRK04965 205 QLQGLEKTESGIRATLDDGRSIEVDAVIAAAGLRPNT 241 (378)
T ss_pred EEEEEEECCCEEEEEECCCCEEECCEEEECCCCCCCH
T ss_conf 8999996599899998599799849999894775482
No 132
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.25 E-value=1.7e-11 Score=85.67 Aligned_cols=115 Identities=28% Similarity=0.348 Sum_probs=75.3
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEE--EE----------CCC------------------
Q ss_conf 9876751999989777999999999869959999678-8775687--50----------100------------------
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLM--IT----------ESI------------------ 49 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~--~~----------~~i------------------ 49 (321)
+...+|||+|||||-||..||..++|.|.+++|+.-+ +.-|++. ++ .++
T Consensus 2 ~~~~~yDVIViG~GhAG~EAa~aaar~G~~t~lit~~~~~ig~msCNPsiGGi~KG~lvrEidaLgG~mg~~aD~~~Iq~ 81 (621)
T PRK05192 2 YYPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAADKTGIQF 81 (621)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 98887988998975799999999996799679996581311586045203672165766687753689999998876168
Q ss_pred --CCC---CC---CCCCCCHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCEECCCCCC
Q ss_conf --787---74---777789789998664323200-23222113320112222222-22222222210000147766
Q gi|254780283|r 50 --ENY---PG---FATSIRGDWLMEQMRQQAENF-GTKIIQDLVVSVDLDRHPFL-VETQSGDLWHADAVVIATGS 115 (321)
Q Consensus 50 --~n~---~g---~~~~~~~~~l~~~~~~~~~~~-~v~~~~~~V~~i~~~~~~~~-v~~~~g~~~~a~~lIiAtG~ 115 (321)
-|- |. .+..++...+...+++.+++. |++++.++|+.+..+++... |.+.+|..+.+++||++||.
T Consensus 82 r~LN~sKGpAv~~~RaQ~Dr~~Y~~~~~~~l~~~~nl~i~~~~v~~l~~~~~~v~GV~~~~g~~i~a~~vvlttGT 157 (621)
T PRK05192 82 RMLNTSKGPAVRAPRAQADRKLYRAAMREILENQPNLTLFQGEVEDLIVENDRVKGVVTQDGLEFRAKAVVLTTGT 157 (621)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEECCEEEEEEECCCEEEEEEEEEEECCC
T ss_conf 7615888830067398885999999999999649997899814579998799999999668709985269983156
No 133
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit; InterPro: IPR011281 Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favoured under different circumstances. This entry represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in Escherichia coli and other proteobacteria, and in a few other lineages. However, excluded are all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.; GO: 0016627 oxidoreductase activity acting on the CH-CH group of donors, 0050660 FAD binding, 0006099 tricarboxylic acid cycle.
Probab=99.25 E-value=4.8e-11 Score=83.09 Aligned_cols=299 Identities=19% Similarity=0.262 Sum_probs=138.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-----CC----CCCE---EEEEC--CCC-----------CCCC----
Q ss_conf 675199998977799999999986995999967-----88----7756---87501--007-----------8774----
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-----SD----LGGQ---LMITE--SIE-----------NYPG---- 54 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-----~~----~GG~---l~~~~--~i~-----------n~~g---- 54 (321)
++|||||||||=|||-||++|++.|+++.++.| +. -||- |.+.. +-+ +|+|
T Consensus 1 h~fDvviVGaGGAGlRaAl~la~~G~~tAv~tKlfPTRSHTvAAQGGI~AALgN~~PeD~W~WHmyDTVKGsDyLgDQDA 80 (615)
T TIGR01816 1 HKFDVVIVGAGGAGLRAALQLAKGGLNTAVVTKLFPTRSHTVAAQGGISAALGNVEPEDDWRWHMYDTVKGSDYLGDQDA 80 (615)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCHHHHH
T ss_conf 94227988687568999998632792388983136886411223445788851778798863640310005652124689
Q ss_pred -------------------------------------CC---------------CCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf -------------------------------------77---------------77897899986643232002322211
Q gi|254780283|r 55 -------------------------------------FA---------------TSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 55 -------------------------------------~~---------------~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
.. .+-+|.-+..-|.+|..+.+++|+..
T Consensus 81 iE~Mc~~apeAV~ELEhmG~PFsRT~~GkIyQR~FGG~t~dfGK~g~v~R~C~aADRTGH~~LhTLYQ~nvk~~t~FF~E 160 (615)
T TIGR01816 81 IEYMCKEAPEAVLELEHMGMPFSRTEEGKIYQRPFGGHTRDFGKGGAVERACAAADRTGHAILHTLYQQNVKADTSFFNE 160 (615)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEH
T ss_conf 98862313577876652777978888983320778697521156332324200014202579999876664318744750
Q ss_pred -EEEECCCC-CCC--------CCCCCCCCC--CCCCCEECCCCCCCCEEEEEC-CCCCCCEE--------ECCCCCCCCC
Q ss_conf -33201122-222--------222222222--221000014776642024652-77433202--------1012111111
Q gi|254780283|r 83 -LVVSVDLD-RHP--------FLVETQSGD--LWHADAVVIATGSEVKWLRLE-SEKKFQGF--------GVSACATCDG 141 (321)
Q Consensus 83 -~V~~i~~~-~~~--------~~v~~~~g~--~~~a~~lIiAtG~~~~~~~ip-G~~~~~~~--------~v~~~~~~d~ 141 (321)
.+..+-.+ +.. .-...++|+ .|+||+||||||..=|.-..- ++=...|- |+. +..++=
T Consensus 161 ~~A~DL~~~~dG~sGPv~~GViA~~l~tGe~h~frAKaVvlATGG~GR~Y~sttnA~t~TGDG~gi~~RaGlP-lqDmEF 239 (615)
T TIGR01816 161 FYALDLIMEEDGESGPVCRGVIAYELETGEIHVFRAKAVVLATGGYGRIYKSTTNAHTLTGDGVGIVLRAGLP-LQDMEF 239 (615)
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCC
T ss_conf 2211046525789588799889876058888899541078973786405676644565521368888726887-113223
Q ss_pred CCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCC-CCCCCCC--CCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCC
Q ss_conf 11122100001025565431012101333222344-3433221--11121122355443322223112114864333444
Q gi|254780283|r 142 FFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVH-RRSSLRS--EKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLF 218 (321)
Q Consensus 142 ~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~-r~~~l~~--~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~ 218 (321)
+-|. +.-|.|.|-.=.|-+ | |.==.|+. .+++|.. .|. ++.| ..-++.-.+++.||..-.......
T Consensus 240 ~QFH--PTGiagaG~LiTEG~----R-GEGG~L~Na~GERFMERYAP~-~KDL---AsRDvVaRsM~~Ei~EGRGvG~~K 308 (615)
T TIGR01816 240 WQFH--PTGIAGAGVLITEGV----R-GEGGILLNANGERFMERYAPT-AKDL---ASRDVVARSMTLEIREGRGVGPNK 308 (615)
T ss_pred CCCC--HHHHHCCCEEEEECC----C-CCCCEEECCCCCCCHHCCCCC-CCCC---CCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 1237--033410872675012----1-477552468875102001675-1003---686364662588764178969675
Q ss_pred CCCC-------C----EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEEC-CCCCCCCCCEEEECC
Q ss_conf 4433-------3----142032100000112222111232235656774256180699799008-885547898289701
Q gi|254780283|r 219 PSVS-------G----VRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMP-DSTATSIPGIFAAGD 286 (321)
Q Consensus 219 ~~~~-------~----v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~-~~~~Ts~p~Iya~GD 286 (321)
+.+- . -++....+-...=.-+|-|--=+...|-..+.-.++=.+-+|-++.-+ +.....+||+||+|-
T Consensus 309 DhV~l~l~HLg~E~l~~kLPgI~E~a~~faGvDpvkdpiPV~PT~HY~MGGIPTn~~Gqvl~~~~~g~~~~V~GLyA~GE 388 (615)
T TIGR01816 309 DHVYLKLDHLGEEVLEEKLPGITELARTFAGVDPVKDPIPVLPTVHYMMGGIPTNYHGQVLRKDGDGNDSIVEGLYAAGE 388 (615)
T ss_pred CEEEEEECCCCHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 88988613488578865287754899986388851078689886341576732156434886424789861023766424
Q ss_pred CCCC---CH-HH----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 2688---44-56----78999979999999999997
Q gi|254780283|r 287 VADE---RY-RQ----AITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 287 v~~~---~~-~~----~~~A~~~G~~Aa~~i~~yl~ 314 (321)
|+.. +- |+ ...-+=.|+.||..+.+|+.
T Consensus 389 ~ACvSVHGANRLGtNSLLDLVVFGR~ag~~~~~~~k 424 (615)
T TIGR01816 389 AACVSVHGANRLGTNSLLDLVVFGRAAGLSAAEYIK 424 (615)
T ss_pred HHHHEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 520000253202112455788988999999999713
No 134
>PRK06184 hypothetical protein; Provisional
Probab=99.25 E-value=8.9e-11 Score=81.53 Aligned_cols=117 Identities=22% Similarity=0.239 Sum_probs=74.1
Q ss_pred CCCC-CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---CCEEEE--------------------------ECCCC
Q ss_conf 9876-75199998977799999999986995999967887---756875--------------------------01007
Q gi|254780283|r 1 MASH-DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL---GGQLMI--------------------------TESIE 50 (321)
Q Consensus 1 M~~~-~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~---GG~l~~--------------------------~~~i~ 50 (321)
|++. .+||+||||||+||++|..|++.|.+++|+|+..- .++... ...++
T Consensus 1 m~~~~tTDVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~RA~~l~~rt~eil~~lGl~d~i~~~~~~~~~~~~~ 80 (503)
T PRK06184 1 MTEYTTTDVLIVGAGPTGLTLAIELARRGVSFRLIEKSPTPFRGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIY 80 (503)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEEEE
T ss_conf 99888579899990999999999999779989999489998868858987899999999878978998435767524999
Q ss_pred --C--------CC------CCC--C--CCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCC--CC-CCCCC
Q ss_conf --8--------77------477--7--7897899986643232002322211-33201122222222222--22-22210
Q gi|254780283|r 51 --N--------YP------GFA--T--SIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQ--SG-DLWHA 106 (321)
Q Consensus 51 --n--------~~------g~~--~--~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~--~g-~~~~a 106 (321)
+ +. +.+ . -++-..+..-+++.+.++++++..+ +++++..+.+..+++.. ++ +++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~le~~L~~~l~~~g~~v~~g~~v~~~~q~~~~V~v~~~~~~~~~~i~a 160 (503)
T PRK06184 81 RDDGSVVESDMMHHLKPTPDEPYHLPLMVPQWRTEEILRERLAELGHRVEFGCELVGFEQDPEGVTARVAGPAGEETVRA 160 (503)
T ss_pred ECCCEEEEEECCCCCCCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEECCCCCEEEEE
T ss_conf 68970565102433466667653525772279999999999986798699476688999819989999985997189998
Q ss_pred CEECCCCCCCC
Q ss_conf 00014776642
Q gi|254780283|r 107 DAVVIATGSEV 117 (321)
Q Consensus 107 ~~lIiAtG~~~ 117 (321)
|+||-|-|++.
T Consensus 161 ~ylVGaDGa~S 171 (503)
T PRK06184 161 RYLVGADGGRS 171 (503)
T ss_pred EEEECCCCCCH
T ss_conf 77741577774
No 135
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=99.24 E-value=5.4e-11 Score=82.78 Aligned_cols=114 Identities=18% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCC---CCEEEEECCCCC--------CEEE-E-----------------------ECC
Q ss_conf 6751999989777999999999869---959999678877--------5687-5-----------------------010
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAM---LKPVIIAGSDLG--------GQLM-I-----------------------TES 48 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g---~~v~iie~~~~G--------G~l~-~-----------------------~~~ 48 (321)
++|||+||||||+|+++|+.|++.| .+|+|+|+..+. ++-. . ...
T Consensus 2 ~~~DV~IvGaGp~Gl~lAl~L~~~g~~~~~v~viE~~~~~~~~~~~~d~Ra~al~~~s~~~L~~lGl~~~l~~~~~pi~~ 81 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGRLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPIRH 81 (395)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEE
T ss_conf 71898999938999999999996188997499993788544568887744788889999999987992887862765428
Q ss_pred CC-----CC------------CCCCCCCCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 07-----87------------74777789789998664323200-2322211-332011222222222222222210000
Q gi|254780283|r 49 IE-----NY------------PGFATSIRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAV 109 (321)
Q Consensus 49 i~-----n~------------~g~~~~~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~l 109 (321)
++ .+ +.+.--+...++...+.+.+.+. ++++..+ +|+++..+.+..++..++++++++|.|
T Consensus 82 i~v~d~~~~~~~~~~~~~~~~~~lg~~v~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~i~a~lv 161 (395)
T PRK05732 82 IHVSDRGHAGFVRLDAEDYGVDALGYVVELADVGQRLFALLDKAPGVTLHCPARVANVERTQDGVRVTLDDGETLTARLL 161 (395)
T ss_pred EEEEECCCCCCEECCHHHCCCCCCCCEEEHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCEEEEECCCCEEEECEE
T ss_conf 99840686772105633238765654323699999999988408996997698899999828927999879989983799
Q ss_pred CCCCCCCC
Q ss_conf 14776642
Q gi|254780283|r 110 VIATGSEV 117 (321)
Q Consensus 110 IiAtG~~~ 117 (321)
|-|-|...
T Consensus 162 VgADG~~S 169 (395)
T PRK05732 162 VAADGTHS 169 (395)
T ss_pred EEECCCCH
T ss_conf 99289962
No 136
>PRK08013 hypothetical protein; Provisional
Probab=99.24 E-value=7e-11 Score=82.11 Aligned_cols=114 Identities=15% Similarity=0.240 Sum_probs=69.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-----CC----EEEE----------------------ECC---C
Q ss_conf 675199998977799999999986995999967887-----75----6875----------------------010---0
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL-----GG----QLMI----------------------TES---I 49 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~-----GG----~l~~----------------------~~~---i 49 (321)
++|||+||||||+|+++|..|++.|++++|+|+..+ +. +.+. ..+ +
T Consensus 2 ~~~DV~IvGaGpvGl~lA~~La~~G~~v~viE~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lGl~~~i~~~~~~~~~~~ 81 (400)
T PRK08013 2 QSVDVAIVGGGMVGLAVACGLQGSGLRVAVLEHRVPEPLAADAPPQLRVSAINAASEKLLTRLGVWQDILARRASCYHGM 81 (400)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEE
T ss_conf 96788999935999999999971899589991899876778888770444008999999998798076686067761157
Q ss_pred C----CCCC---CCCC----------CCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 7----8774---7777----------89789998664323200-2322211-3320112222222222222222100001
Q gi|254780283|r 50 E----NYPG---FATS----------IRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVV 110 (321)
Q Consensus 50 ~----n~~g---~~~~----------~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lI 110 (321)
+ +-.+ |... +....+...+.+.+..+ +++++.+ ++..+....+...|+.++|++++++.||
T Consensus 82 ~v~~~~~~g~~~~~~~~~~~~~lg~ii~~~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~~~v~l~~g~~i~a~lvV 161 (400)
T PRK08013 82 EVWDKDSFGHISFDDQSMGYSHLGHIVENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVI 161 (400)
T ss_pred EEECCCCCCEEECCCCCCCCCCCEEEECCHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEE
T ss_conf 98637877524326201387523043020889999999998689829986866899871697159994799899742899
Q ss_pred CCCCCCC
Q ss_conf 4776642
Q gi|254780283|r 111 IATGSEV 117 (321)
Q Consensus 111 iAtG~~~ 117 (321)
-|-|+..
T Consensus 162 gADG~~S 168 (400)
T PRK08013 162 GADGANS 168 (400)
T ss_pred ECCCCCC
T ss_conf 9788761
No 137
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.23 E-value=5.4e-11 Score=82.79 Aligned_cols=114 Identities=19% Similarity=0.275 Sum_probs=70.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---------CCEEE-EE------------------------CCC
Q ss_conf 675199998977799999999986995999967887---------75687-50------------------------100
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL---------GGQLM-IT------------------------ESI 49 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~---------GG~l~-~~------------------------~~i 49 (321)
++|||+||||||+|+++|+.|++.|++|+|+|+..+ +-+.+ .. ..+
T Consensus 2 ~~~DV~IvGaG~vGl~lAl~La~~G~~V~iiE~~~p~~~~~~~~~~~R~~al~~~s~~~L~~lG~~~~i~~~~~~~~~~~ 81 (384)
T PRK08849 2 NKYDIAVVGGGMVGAATAIGFAKQGRSVAVIEGFEPKAFEASQPMDIRVSAISQNSVDLLESLGAWSSIVAMRVCPYKRL 81 (384)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEEECHHHHHHHHHCCCHHHHHHCCCCCCCEE
T ss_conf 81899999924999999999995799599996899876666678770567867999999998798646876147860025
Q ss_pred CCC--CC----CC-CCC---------CHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf 787--74----77-778---------9789998664323200-2322211-33201122222222222222221000014
Q gi|254780283|r 50 ENY--PG----FA-TSI---------RGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVI 111 (321)
Q Consensus 50 ~n~--~g----~~-~~~---------~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIi 111 (321)
+.| +. |. ... ....+...+.+++..+ +++++.+ +++.++...+...++.++|++++++.||.
T Consensus 82 ~~~~~~~~~~~f~~~~~~~~~lg~iv~~~~l~~~L~~~~~~~~~i~~~~~~~v~~~~~~~~~~~v~l~~g~~i~a~llIg 161 (384)
T PRK08849 82 ETWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLLCPEKLKDLEFSAEGNRVTLESGAEIEAKWVIG 161 (384)
T ss_pred EEECCCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEEE
T ss_conf 53017764412485343863000034379999999999984899199838778898853881499978999998547999
Q ss_pred CCCCCC
Q ss_conf 776642
Q gi|254780283|r 112 ATGSEV 117 (321)
Q Consensus 112 AtG~~~ 117 (321)
|-|+..
T Consensus 162 ADG~~S 167 (384)
T PRK08849 162 ADGANS 167 (384)
T ss_pred EECCCH
T ss_conf 207864
No 138
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=99.23 E-value=6.8e-11 Score=82.19 Aligned_cols=115 Identities=17% Similarity=0.230 Sum_probs=71.0
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC----C----CEEEE-------------------------EC
Q ss_conf 987675199998977799999999986995999967887----7----56875-------------------------01
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL----G----GQLMI-------------------------TE 47 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~----G----G~l~~-------------------------~~ 47 (321)
|++ ++||+||||||+|+.+|..|++.|.+++|+|+..+ + .+... ..
T Consensus 1 M~~-~~DV~IvGaGp~Gl~lA~~La~~G~~v~viE~~~~~~~~~~~~d~R~~al~~~s~~~L~~lG~~~~i~~~~~~p~~ 79 (405)
T PRK08850 1 MMQ-SVDVAIIGGGMVGLALAAALKDSDLRIAVIEGQLPEEELNELPDVRVSALSRASEHILRNVGAWQGIEARRAAPYT 79 (405)
T ss_pred CCC-CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEE
T ss_conf 999-8768999915899999999985899789993799863446789865888789999999987985556762378512
Q ss_pred CCCCC-------CCCCC-----C-----CCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 00787-------74777-----7-----89789998664323200-2322211-33201122222222222222221000
Q gi|254780283|r 48 SIENY-------PGFAT-----S-----IRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADA 108 (321)
Q Consensus 48 ~i~n~-------~g~~~-----~-----~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~ 108 (321)
.++-+ ..|.. . +....+...+.+++.+. ++++..+ +++.+...+...++++++|++++++.
T Consensus 80 ~~~v~~~~~~~~i~~~~~~~~~~~lg~iv~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v~~~~g~~i~a~l 159 (405)
T PRK08850 80 AMEVWEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQIQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKL 159 (405)
T ss_pred EEEEEECCCCCEECCCHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEEECCCCEEEEECCCCEEEEEE
T ss_conf 58998479874312474441785421246449999999999973899199737535567617971599977998887508
Q ss_pred ECCCCCCC
Q ss_conf 01477664
Q gi|254780283|r 109 VVIATGSE 116 (321)
Q Consensus 109 lIiAtG~~ 116 (321)
||.|-|..
T Consensus 160 lVgaDG~~ 167 (405)
T PRK08850 160 VVGADGAN 167 (405)
T ss_pred EEEECCCC
T ss_conf 99916987
No 139
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=99.23 E-value=7.8e-11 Score=81.83 Aligned_cols=115 Identities=18% Similarity=0.268 Sum_probs=73.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---CCEEE--EE----------------------CC--CCC--
Q ss_conf 7675199998977799999999986995999967887---75687--50----------------------10--078--
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL---GGQLM--IT----------------------ES--IEN-- 51 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~---GG~l~--~~----------------------~~--i~n-- 51 (321)
-++|||+||||||+||++|..|++.|.+++|+|+..- .++-. .. .. ..+
T Consensus 10 ~~d~dVlIVGaGPvGL~lA~~Lar~Gi~v~vvEr~~~~~~~prA~~l~~rtleil~~lGl~~~i~~~~~~~~~~~~~~~~ 89 (554)
T PRK06183 10 AHDTDVVIVGAGPVGLTLANLLGQQGVRVLVLERWPTLYDYPRAVGIDDEALRTFQSIGLVDEVLPHTTPNHGMRFLDAK 89 (554)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECC
T ss_conf 89888899995989999999999779999999189998888868998999999999878989998418414318999489
Q ss_pred ------CC------CCCCC--CCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCCC-----CCCCCCCCEEC
Q ss_conf ------77------47777--89789998664323200-2322211-33201122222222222-----22222100001
Q gi|254780283|r 52 ------YP------GFATS--IRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVETQ-----SGDLWHADAVV 110 (321)
Q Consensus 52 ------~~------g~~~~--~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~~-----~g~~~~a~~lI 110 (321)
+. +++.. +.-.++...+.+.+.++ ++++..+ +++++..+.+..+++.. ...++++|+||
T Consensus 90 g~~~~~~~~~~~~~~~p~~~~~~Q~~lE~~L~~~l~~~~g~~v~~g~~v~~~~qd~~~V~v~~~~~~~g~~~~ira~ylV 169 (554)
T PRK06183 90 GRCLADIAPTTDEFGWPRRNAFYQPLLEAVLREGLARFPHVRVRFGHEVVALEQDDDGVTVTLTDADDGQRETVRARYVV 169 (554)
T ss_pred CCEEEEECCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEE
T ss_conf 97899726876656877144610999999999999868998999388999999718842799997799957999976899
Q ss_pred CCCCCCC
Q ss_conf 4776642
Q gi|254780283|r 111 IATGSEV 117 (321)
Q Consensus 111 iAtG~~~ 117 (321)
-|=|++.
T Consensus 170 GaDGa~S 176 (554)
T PRK06183 170 GCDGANS 176 (554)
T ss_pred ECCCCCC
T ss_conf 7178870
No 140
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.23 E-value=1.1e-10 Score=80.91 Aligned_cols=33 Identities=39% Similarity=0.487 Sum_probs=31.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
|||+|||||.|||+||+.|++.|++|.|+.+.+
T Consensus 1 fDviVIGgGLAGl~aai~~a~~G~~~~lvs~Gq 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 978999961999999999997799589993783
No 141
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=99.23 E-value=9.7e-11 Score=81.28 Aligned_cols=113 Identities=15% Similarity=0.289 Sum_probs=74.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-----CC------EEE-------------------------EECC
Q ss_conf 75199998977799999999986995999967887-----75------687-------------------------5010
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL-----GG------QLM-------------------------ITES 48 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~-----GG------~l~-------------------------~~~~ 48 (321)
++||+||||||+|+++|..|++.|++++|+|+... .. +.+ +...
T Consensus 2 ~~DV~IvGaGpvGl~lAl~L~~~G~~v~lie~~~~~~~~~~~~~~~~~R~~al~~~s~~~L~~lG~~~~l~~~~~~p~~~ 81 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALEGSGLEVLLVDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSD 81 (405)
T ss_pred CCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCEEE
T ss_conf 98899999059999999999618997899958997778776677898425567799899999879816568735776124
Q ss_pred CCCC-------CCCCCC----------CCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf 0787-------747777----------897899986643232002322211-3320112222222222222222100001
Q gi|254780283|r 49 IENY-------PGFATS----------IRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVV 110 (321)
Q Consensus 49 i~n~-------~g~~~~----------~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lI 110 (321)
++-+ ..|... +....+...+.+.+.+.+++++.+ ++..+..+.+..+++.++|++++++.||
T Consensus 82 ~~v~d~~~~~~~~f~~~~~~~~~lg~vv~~~~l~~~L~~~l~~~~v~~~~~~~v~~~~~~~~~~~v~l~~g~~i~a~llV 161 (405)
T PRK05714 82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVV 161 (405)
T ss_pred EEEECCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEECCCCEEECCEEE
T ss_conf 55205898622764410147644411232699999999999727988984878999998388079996799798638899
Q ss_pred CCCCCCC
Q ss_conf 4776642
Q gi|254780283|r 111 IATGSEV 117 (321)
Q Consensus 111 iAtG~~~ 117 (321)
.|-|+..
T Consensus 162 gADG~~S 168 (405)
T PRK05714 162 AADGANS 168 (405)
T ss_pred ECCCCCC
T ss_conf 9589985
No 142
>PRK11445 putative oxidoreductase; Provisional
Probab=99.22 E-value=1e-10 Score=81.17 Aligned_cols=112 Identities=21% Similarity=0.172 Sum_probs=66.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC----------CCCCEEEEE--CCCC----CCC---------------
Q ss_conf 751999989777999999999869959999678----------877568750--1007----877---------------
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS----------DLGGQLMIT--ESIE----NYP--------------- 53 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~----------~~GG~l~~~--~~i~----n~~--------------- 53 (321)
+|||+||||||||-+||..|++. ++|+|+|+. .+||.+.+. ..+. +.|
T Consensus 1 ~YDVvVVGgGPAGstaA~~La~~-~~Vllldk~~~~~~~pr~KpCGG~I~~~a~~~l~~~~~~ip~~~l~~~~i~~~~~~ 79 (348)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTI 79 (348)
T ss_pred CCCEEEECCCHHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHCCCCEEEEEEEC
T ss_conf 99799989788999999998268-98899981356567999887868719728999875067885665015537876642
Q ss_pred -----------CCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-CCCCC--CCCCCEECCCCCCCC
Q ss_conf -----------47777897899986643232002322211332011222222222-22222--221000014776642
Q gi|254780283|r 54 -----------GFATSIRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVE-TQSGD--LWHADAVVIATGSEV 117 (321)
Q Consensus 54 -----------g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~V~~i~~~~~~~~v~-~~~g~--~~~a~~lIiAtG~~~ 117 (321)
..-..++.+.+=..+++.+...+..+.++.+.++..+++.++|. ..+|+ ++++|.||-|-|+..
T Consensus 80 ~~~~~~~~~~~~~yi~~~R~~fD~~L~~~a~~~~~~~~~~~~~~i~~~~~g~~v~~~~~g~~~~~~a~~iIGADGanS 157 (348)
T PRK11445 80 DLANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANS 157 (348)
T ss_pred CCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCEEEEEEEECCEEEEEEECEEEECCCCCC
T ss_conf 787752213566076055999999999988728738971489999983980799997189078987378998989775
No 143
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.20 E-value=1.3e-10 Score=80.55 Aligned_cols=112 Identities=28% Similarity=0.401 Sum_probs=71.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCCEEEEECC---------------------CC---------
Q ss_conf 67519999897779999999998699599996788---7756875010---------------------07---------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD---LGGQLMITES---------------------IE--------- 50 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~---~GG~l~~~~~---------------------i~--------- 50 (321)
...||+|||+|.|||+||+++++.|.+|+|+||.. .||....+.. +.
T Consensus 3 ~~VDVvVVG~G~AGl~AAi~Aae~Ga~V~llEK~~~~~~GG~s~~s~g~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 82 (456)
T PRK08274 3 AMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR 82 (456)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEEEECCCCCCCHHHHHCCCHHHCCCHHHHCCCCCCHHHHHHHHHHHCCCC
T ss_conf 73888999988999999999998799099998327778880305538644553686654268899999999999872898
Q ss_pred -----------------CC---CC--CCC---------------CCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCC
Q ss_conf -----------------87---74--777---------------7897899986643232002322211-3320112222
Q gi|254780283|r 51 -----------------NY---PG--FAT---------------SIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRH 92 (321)
Q Consensus 51 -----------------n~---~g--~~~---------------~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~ 92 (321)
+| .| |.+ .-.+..++..+.+.+++.+++++.+ +++.+..+++
T Consensus 83 ~d~~l~~~~~~~s~~~i~wl~~~Gv~f~~~~~~~~~~~~~~~~~~g~G~~~~~~l~~~~~~~gv~i~~~t~~~~Li~d~g 162 (456)
T PRK08274 83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFMGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG 162 (456)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECC
T ss_conf 76999999997239999999971961356688864447983414798799999999999973997993888899999099
Q ss_pred CCC-CCCCCCCCCCCCEECCCCCCC
Q ss_conf 222-222222222100001477664
Q gi|254780283|r 93 PFL-VETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 93 ~~~-v~~~~g~~~~a~~lIiAtG~~ 116 (321)
... |.. ....+.+|.||||||..
T Consensus 163 ~V~Gv~~-~~~~i~AkaVVLAtGGf 186 (456)
T PRK08274 163 RFVAARA-GAERIRARAVVLAAGGF 186 (456)
T ss_pred EEEEEEE-CEEEECCCEEEEECCCC
T ss_conf 9999992-53897168699957898
No 144
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=99.20 E-value=1.1e-10 Score=81.04 Aligned_cols=113 Identities=19% Similarity=0.328 Sum_probs=79.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC---C--CCEEEE-E--------------------CCCCC-----
Q ss_conf 751999989777999999999869--9599996788---7--756875-0--------------------10078-----
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAM--LKPVIIAGSD---L--GGQLMI-T--------------------ESIEN----- 51 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g--~~v~iie~~~---~--GG~l~~-~--------------------~~i~n----- 51 (321)
+.||+||||||+|+++|+.|++.| .+++++|+.. + .++... . ..+..
T Consensus 1 ~~DV~IVGaGpvGl~lAl~L~~~G~~~~v~vie~~~~~~~~~d~Ra~al~~~s~~~L~~lGv~~~l~~~~~~i~~~~v~d 80 (403)
T PRK07333 1 QRDVVIAGGGYVGLALAVALKQAAPHLPVIVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWQEIAPEAQPITDMVITD 80 (403)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCEEEEEEE
T ss_conf 98399999469999999999846999669998288666878887688867999999998798788775161002799984
Q ss_pred ----------CCCCCC----------CCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEEC
Q ss_conf ----------774777----------7897899986643232002322211-3320112222222222222222100001
Q gi|254780283|r 52 ----------YPGFAT----------SIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVV 110 (321)
Q Consensus 52 ----------~~g~~~----------~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lI 110 (321)
+..|.. -++...+.+.+.+.+++.++++..+ ++++++.+++..+|+.+++++++++.||
T Consensus 81 ~~~~~~~~~~~l~f~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~i~a~llI 160 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLADGSTLEARLLV 160 (403)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEECCCEEEEEEECCCEEEEEECCCCEEEEEEEE
T ss_conf 65577666420024643456887368745899999999999828998985885789997498079997899899986999
Q ss_pred CCCCCCC
Q ss_conf 4776642
Q gi|254780283|r 111 IATGSEV 117 (321)
Q Consensus 111 iAtG~~~ 117 (321)
.|-|+..
T Consensus 161 gaDG~~S 167 (403)
T PRK07333 161 AADGARS 167 (403)
T ss_pred ECCCCCH
T ss_conf 8348761
No 145
>PRK08244 hypothetical protein; Provisional
Probab=99.20 E-value=1.2e-10 Score=80.78 Aligned_cols=113 Identities=19% Similarity=0.266 Sum_probs=73.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---CCEEEEE---------------------CCCC--CCCC----
Q ss_conf 75199998977799999999986995999967887---7568750---------------------1007--8774----
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL---GGQLMIT---------------------ESIE--NYPG---- 54 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~---GG~l~~~---------------------~~i~--n~~g---- 54 (321)
++||+||||||+||++|..|++.|.+++|+|+..- ..+-... ..+. +|.+
T Consensus 2 ~tDVlIVGaGPvGL~lAl~La~~Gv~v~vvEr~~~~~~~~RA~~l~~rt~eil~~~Gl~~~l~~~g~~~~~~~~~~~~~~ 81 (494)
T PRK08244 2 KTDVIIIGGGPVGLMLASELALAGVRTCVIERLKEPVPYSKALTLHPRTLELLEMRGLLERFLEKGRKLPSGHFAGLDTR 81 (494)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEECCHHHHHHHHHCCCHHHHHHHCEECCCCEEECCCCC
T ss_conf 98999999478999999999977999999908999888998746089999999987898898852107656368144330
Q ss_pred -----------CCCCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCC--CCC-CCCCCCEECCCCCCCC
Q ss_conf -----------7777897899986643232002322211-3320112222222222--222-2221000014776642
Q gi|254780283|r 55 -----------FATSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVET--QSG-DLWHADAVVIATGSEV 117 (321)
Q Consensus 55 -----------~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~--~~g-~~~~a~~lIiAtG~~~ 117 (321)
+...++-.++-.-+.+.+.+++++++.+ +++++..+.+..++.. .++ +++++++||-|-|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~Q~~le~iL~~~a~~~g~~v~~g~e~~~~~~~~d~V~~~~~~~~g~~~i~a~ylVGaDGa~S 159 (494)
T PRK08244 82 LDFSALDTRANYTLFLPQAETEKILEEHARSLGVEILRGHEALAVRQDGDGVEVVVRGPDGLRTLTSLYAVGADGAGS 159 (494)
T ss_pred EECCCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEEEECCCCEEEEEEEEEEECCCCC
T ss_conf 320335778882698155999999999998479889968689999986997899999089768998779998246672
No 146
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=99.20 E-value=1.2e-10 Score=80.79 Aligned_cols=112 Identities=21% Similarity=0.262 Sum_probs=69.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCCE-EEEEC-------------------------CCC-C---
Q ss_conf 7519999897779999999998699599996788---7756-87501-------------------------007-8---
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD---LGGQ-LMITE-------------------------SIE-N--- 51 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~---~GG~-l~~~~-------------------------~i~-n--- 51 (321)
+.||+||||||+||++|+.|+|.|.+++|||+.. ..|+ +...+ .+. +
T Consensus 1 ~~DV~IvGaG~aGl~lA~~L~~~Gi~v~V~Er~~~~~~~g~g~~l~p~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 80 (349)
T pfam01494 1 ETDVLIVGGGPAGLMLALLLARAGVRVVLVERHATTSVLPRAGGLNQRTMELLRQAGLEDRILAEGAPHEGMGLAFYNTS 80 (349)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99789999288999999999877998999928999887877999898999999987986899850687510599983786
Q ss_pred -------CC---CCCCCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCC-----CCCCCCEECCCCCC
Q ss_conf -------77---47777897899986643232002322211-3320112222222222222-----22210000147766
Q gi|254780283|r 52 -------YP---GFATSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSG-----DLWHADAVVIATGS 115 (321)
Q Consensus 52 -------~~---g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g-----~~~~a~~lIiAtG~ 115 (321)
+. .....++-..+...+.+.+...++++..+ +++.+..+.+..++...++ .++++|.||-|-|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~i~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~i~adlvIgADG~ 160 (349)
T pfam01494 81 RRRADLDFLTSPPRVTVYPQTELEPILREHAEARGAQVRFGTEVLSLEQDGDGVTAVVRDRRDGEEYTVRAKYLVGCDGG 160 (349)
T ss_pred CCEEECCCCCCCCCEEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCEEEEEEECCCCCEEEEEEEEEECCCCC
T ss_conf 42220145567762688629999999999998579989966178775205994379998458995589997688415777
Q ss_pred C
Q ss_conf 4
Q gi|254780283|r 116 E 116 (321)
Q Consensus 116 ~ 116 (321)
.
T Consensus 161 ~ 161 (349)
T pfam01494 161 R 161 (349)
T ss_pred C
T ss_conf 6
No 147
>PRK06185 hypothetical protein; Provisional
Probab=99.20 E-value=1.9e-10 Score=79.61 Aligned_cols=117 Identities=18% Similarity=0.259 Sum_probs=71.5
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC------CCCEEEEE-----------CC--------C------
Q ss_conf 98767519999897779999999998699599996788------77568750-----------10--------0------
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD------LGGQLMIT-----------ES--------I------ 49 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~------~GG~l~~~-----------~~--------i------ 49 (321)
++..++||+||||||+||++|+.|+|.|.+++|+|+.. .|..+.+. .. +
T Consensus 2 ~~~~~tDV~IVGaGpaGL~lAl~Lar~Gi~V~VlEk~~~~~~~~Rg~~i~p~tl~iL~~lGl~~~l~~~~~~~~~~~~~~ 81 (409)
T PRK06185 2 PMVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHSKVRTLRFD 81 (409)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCEEEEEEE
T ss_conf 98878998999918899999999997799999991899987786189878999999998798689973678733479999
Q ss_pred --------CCC---CC---CCCCCCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCC---CCCCCCCC-CCCCCEE
Q ss_conf --------787---74---777789789998664323200-2322211-332011222222---22222222-2210000
Q gi|254780283|r 50 --------ENY---PG---FATSIRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPF---LVETQSGD-LWHADAV 109 (321)
Q Consensus 50 --------~n~---~g---~~~~~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~---~v~~~~g~-~~~a~~l 109 (321)
.+| +. +...++-.++.+.+.+.+.++ +++++.+ +++++..+++.. ++.+.+|+ ++++|.|
T Consensus 82 ~~g~~~~~~d~~~l~~~~~~~~~~~q~~ll~~L~~~a~~~~~~~l~~~~~v~~l~~d~~~v~gV~~~~~dg~~~i~adlv 161 (409)
T PRK06185 82 IGGRTVTLADFSRLPTRYPYIAMMPQWDFLDFLAEKASRYPTFTLRMGAEVTGLIEEGGRVAGVRYRTPDGELEIRADLT 161 (409)
T ss_pred ECCEEEEEECCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCEEEECCEEEEEEEECCCEEEEEEECCCCCEEEEEEEE
T ss_conf 59938997430016888884277018999999999985189959996888899999599089999984898589997299
Q ss_pred CCCCCCCC
Q ss_conf 14776642
Q gi|254780283|r 110 VIATGSEV 117 (321)
Q Consensus 110 IiAtG~~~ 117 (321)
|-|-|...
T Consensus 162 VGADG~~S 169 (409)
T PRK06185 162 VGADGRHS 169 (409)
T ss_pred EECCCCCC
T ss_conf 97389984
No 148
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=99.20 E-value=6.4e-11 Score=82.35 Aligned_cols=41 Identities=44% Similarity=0.672 Sum_probs=35.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEE
Q ss_conf 76751999989777999999999869959999678-877568
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQL 43 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l 43 (321)
--+.||+|+||||+||+||++|++.|++++|||++ .+||..
T Consensus 15 ~~e~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~GGG~ 56 (229)
T pfam01946 15 YAESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGA 56 (229)
T ss_pred HHHCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 642688998878179999999987898599996452688862
No 149
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=99.19 E-value=1.4e-10 Score=80.34 Aligned_cols=114 Identities=22% Similarity=0.319 Sum_probs=78.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC--C--CCCEEE-EE-------------CCCC---------------
Q ss_conf 6751999989777999999999869959999678--8--775687-50-------------1007---------------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS--D--LGGQLM-IT-------------ESIE--------------- 50 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~--~--~GG~l~-~~-------------~~i~--------------- 50 (321)
+.+||+||||||+||++|+.|++.|++|+|+|+. + ..|+.. .. ..+.
T Consensus 1 ~~~dV~IvGaG~aGl~lA~~L~~~G~~V~liE~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~ 80 (387)
T COG0654 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDG 80 (387)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHCCCCCEEEEEEECC
T ss_conf 98549999978999999999982899689990776113557559998989999999849907776157886037999659
Q ss_pred -------CCCCCC-----CCCCHHHHHHHHHHHHHHCC-CCCCCE-EEEECCCCCCCCCCCCC-CCCCCCCCEECCCCCC
Q ss_conf -------877477-----77897899986643232002-322211-33201122222222222-2222210000147766
Q gi|254780283|r 51 -------NYPGFA-----TSIRGDWLMEQMRQQAENFG-TKIIQD-LVVSVDLDRHPFLVETQ-SGDLWHADAVVIATGS 115 (321)
Q Consensus 51 -------n~~g~~-----~~~~~~~l~~~~~~~~~~~~-v~~~~~-~V~~i~~~~~~~~v~~~-~g~~~~a~~lIiAtG~ 115 (321)
+..... .-++..++...+.+.+...+ ++++.+ +|+.++.+++..+++.+ +|+++++|.||-|-|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~l~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~ 160 (387)
T COG0654 81 GRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGA 160 (387)
T ss_pred CCEEEEECHHHCCCCCCEEEEEHHHHHHHHHHHHHHCCCEEEEECCEEEEEEECCCEEEEEEECCCEEEECCEEEECCCC
T ss_conf 96389815221687762799888999999999987189829995777999885397379999039919975999988998
Q ss_pred CC
Q ss_conf 42
Q gi|254780283|r 116 EV 117 (321)
Q Consensus 116 ~~ 117 (321)
..
T Consensus 161 ~S 162 (387)
T COG0654 161 NS 162 (387)
T ss_pred CH
T ss_conf 76
No 150
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.18 E-value=7.4e-11 Score=81.99 Aligned_cols=40 Identities=38% Similarity=0.686 Sum_probs=35.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEE
Q ss_conf 6751999989777999999999869959999678-877568
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQL 43 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l 43 (321)
-+.||+|||||||||+||++|++.|++++|||++ .+||.+
T Consensus 24 ~e~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~GGG~ 64 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGI 64 (257)
T ss_pred HHCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf 40688998888279999999986896599997134688863
No 151
>PRK11728 hypothetical protein; Provisional
Probab=99.18 E-value=1.3e-10 Score=80.48 Aligned_cols=112 Identities=18% Similarity=0.197 Sum_probs=79.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC-CCCEEE--EECCC-----------------------------C
Q ss_conf 75199998977799999999986--99599996788-775687--50100-----------------------------7
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARA--MLKPVIIAGSD-LGGQLM--ITESI-----------------------------E 50 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~--g~~v~iie~~~-~GG~l~--~~~~i-----------------------------~ 50 (321)
-|||+|||||-.|++.|.+|+++ +.+++|+||+. +|..-+ ++.-+ +
T Consensus 2 ~yDvvIIGgGIvG~siA~~Ls~~~~~~~V~vlEke~~~g~~~S~rNSgviHaG~~y~p~slka~l~~~g~~l~~~~~~~~ 81 (400)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQDRYPGARIALLEKESGPARHQTGHNSGVIHAGVYYTPGSLKARFCRRGNEATKAFCDQH 81 (400)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 53099999679999999999955999839999689997563353242321564358999999999999999999999985
Q ss_pred CCCCC------------------------------------------------------CCC--CCHHHHHHHHHHHHHH
Q ss_conf 87747------------------------------------------------------777--8978999866432320
Q gi|254780283|r 51 NYPGF------------------------------------------------------ATS--IRGDWLMEQMRQQAEN 74 (321)
Q Consensus 51 n~~g~------------------------------------------------------~~~--~~~~~l~~~~~~~~~~ 74 (321)
|+|-. |.. ++..+++..+.+++..
T Consensus 82 ~i~~~~~GkliVA~~~~e~~~L~~l~~~~~~ngv~~~~l~~~ei~~~eP~v~~~~al~~p~tgivD~~~l~~al~~~a~~ 161 (400)
T PRK11728 82 GIPYEVCGKLLVATSELELERMEALYERAAANGIEVERLDAEELREREPNIRGLGAIFVPSTGIVDYRAVAEAMAELIQA 161 (400)
T ss_pred CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCEEECCCCEEECHHHHHHHHHHHHHH
T ss_conf 99921168699977999999999999999856986289679999986886543235976877277899999999999997
Q ss_pred CCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 02322211-3320112222222222222222100001477664
Q gi|254780283|r 75 FGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 75 ~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
.|+++..+ +|++++..++.|.+.+.++.+++++.||-|.|..
T Consensus 162 ~G~~i~~~~~V~~i~~~~~~~~v~t~~~~~i~a~~vINaAGl~ 204 (400)
T PRK11728 162 RGGEIRLGAEVTALDEHANGVVVRTSQGGEFEARTLVNCAGLM 204 (400)
T ss_pred CCCEEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCHH
T ss_conf 8989992788989999799999998899889971899866652
No 152
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.17 E-value=1.5e-10 Score=80.22 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=31.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 5199998977799999999986995999967887
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL 39 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~ 39 (321)
+||+|||||..|+++|++|+|.|++|+|+|+++.
T Consensus 2 ~~V~VIGaGivGlstA~~La~~G~~VtviDr~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHRY 35 (410)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 9599989839999999999978991899969899
No 153
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.16 E-value=1.6e-10 Score=80.02 Aligned_cols=103 Identities=20% Similarity=0.242 Sum_probs=78.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
+..++|+|||||+-|+.+|..|.+.|.+|+++|..+. ++ . ..-++++.+.+.+..++.|++++.+
T Consensus 142 ~~~k~vvVIGgG~IGlE~A~~l~~~G~~Vtvve~~~~---~l--~----------r~~~~~~~~~l~~~~~~~GV~~~~~ 206 (400)
T PRK09754 142 QPERSVVIVGAGTIGLELAASATQRRCKVTVIELAAT---VM--G----------RNAPPPVQRYLLQRHQQAGVRILLN 206 (400)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC--C----------CCCCHHHHHHHHHHHHHCCCEEEEC
T ss_conf 1587399988558999999999975994899953463---41--0----------0269899999999999789899958
Q ss_pred E-EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEE
Q ss_conf 3-32011222222222222222210000147766420246
Q gi|254780283|r 83 L-VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLR 121 (321)
Q Consensus 83 ~-V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ 121 (321)
. |..+. +++...+.+++|+++.+|.+|+|+|..|+.--
T Consensus 207 ~~v~~~~-~g~~~~v~l~~G~~l~aD~VivaiGv~Pnt~l 245 (400)
T PRK09754 207 NAIEHVV-DGEKVELTLQSGETLQADVVIYGIGISANDQL 245 (400)
T ss_pred CEEEEEE-CCCEEEEEECCCCEEECCEEEECCCCCCCHHH
T ss_conf 7589997-89779999868999985899989767537589
No 154
>PRK08774 consensus
Probab=99.16 E-value=3.2e-10 Score=78.27 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=32.9
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 767519999897779999999998699599996788
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
++.|||+||||||+|+++|..|++.|++|+|+|+..
T Consensus 2 ~~~~DVlIVGgGpvGl~lA~~La~~G~~v~liE~~~ 37 (402)
T PRK08774 2 THPHDVLIVGGGLVGSSLAIALDRIGLDVGLVEATP 37 (402)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHCCCCCEEEEECCC
T ss_conf 899878999916999999999966899789993799
No 155
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.16 E-value=1.2e-10 Score=80.82 Aligned_cols=38 Identities=21% Similarity=0.384 Sum_probs=34.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCC
Q ss_conf 7675199998977799999999986--9959999678877
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARA--MLKPVIIAGSDLG 40 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~--g~~v~iie~~~~G 40 (321)
..+.||+|||||.+||++|++|++. +.+|+|+|++.+|
T Consensus 22 d~~aDVvIIGgG~tGLstA~~L~~~~pg~~VvvLEa~~iG 61 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCG 61 (460)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 9755199999439999999999974899988999489615
No 156
>PRK06126 hypothetical protein; Provisional
Probab=99.16 E-value=2.8e-10 Score=78.57 Aligned_cols=115 Identities=17% Similarity=0.301 Sum_probs=73.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-C--CCEEE--EE------------C------------------
Q ss_conf 767519999897779999999998699599996788-7--75687--50------------1------------------
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-L--GGQLM--IT------------E------------------ 47 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~--GG~l~--~~------------~------------------ 47 (321)
+.++||+||||||+||++|..|++.|.+++|+|+.. . .++-. .. .
T Consensus 5 ~~~~DVlIVGaGPvGL~lA~~La~~Gi~v~viEr~~~~~~~~rA~~l~~rtlEil~~lGl~~~l~~~g~p~~~~~~~~~~ 84 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALELGRRGVDSILVERGDGTAFNPKANATSARSMEHFRRLGIADEVRSAGLPADYPTDIAYF 84 (545)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCCCCEEEE
T ss_conf 88899899994989999999999879999998899998878858998889999999879889998507875346633688
Q ss_pred ------CCC--CCCCC------C-------------CCCCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCC
Q ss_conf ------007--87747------7-------------7789789998664323200-2322211-3320112222222222
Q gi|254780283|r 48 ------SIE--NYPGF------A-------------TSIRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVET 98 (321)
Q Consensus 48 ------~i~--n~~g~------~-------------~~~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~ 98 (321)
.+. .++.. . ..++-.++...+.+.+..+ ++++..+ +++++..+++..++..
T Consensus 85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Q~~lE~~L~~~~~~~~gv~v~~g~~~~~~~qd~~gV~~~~ 164 (545)
T PRK06126 85 TRLTGYELARITLPSAREAITPVGGPDGSWPSPELPHRIPQKYVEPILLEHAQAQPGVTLRYGHRLTDFEQDADGVTATV 164 (545)
T ss_pred EECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEE
T ss_conf 61176688862167544334565445665566563356288999999999997489988980778999998389469999
Q ss_pred C---CC--CCCCCCEECCCCCCCC
Q ss_conf 2---22--2221000014776642
Q gi|254780283|r 99 Q---SG--DLWHADAVVIATGSEV 117 (321)
Q Consensus 99 ~---~g--~~~~a~~lIiAtG~~~ 117 (321)
. +| .++++++||-|-|++.
T Consensus 165 ~~~~~g~~~~i~A~ylVGaDGarS 188 (545)
T PRK06126 165 EDLDGGESLTIRADYLVGCDGARS 188 (545)
T ss_pred EECCCCCEEEEEEEEEEECCCCCC
T ss_conf 989999489998779997478873
No 157
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=99.15 E-value=7.9e-11 Score=81.81 Aligned_cols=39 Identities=41% Similarity=0.643 Sum_probs=35.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 767519999897779999999998699599996788-775
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
..++||||||+|.|||+||+++++.|.+|+|+||.. +||
T Consensus 8 D~e~DVvVVG~G~AGl~AAi~Aae~Ga~VillEK~~~~GG 47 (579)
T PRK06134 8 DLECDVLVIGSGAAGLAAAVTAAWHGLKVVVVEKDPVFGG 47 (579)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 5771869989678999999999987994899979998873
No 158
>PRK07236 hypothetical protein; Provisional
Probab=99.15 E-value=2.7e-10 Score=78.70 Aligned_cols=110 Identities=17% Similarity=0.222 Sum_probs=70.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-C----CCCEEEEECC---------C---------------CCCCC-
Q ss_conf 751999989777999999999869959999678-8----7756875010---------0---------------78774-
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-D----LGGQLMITES---------I---------------ENYPG- 54 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~----~GG~l~~~~~---------i---------------~n~~g- 54 (321)
+-+|+|||||||||++|+.|++.|++++|+|+. . .|..+...+. + .+.-|
T Consensus 6 ~~kV~IVGaGiaGL~~A~~L~~~G~~v~v~Er~~~~~~~~G~gi~l~p~~~~~L~~~G~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 KPRAVVVGGSLGGLFAANLLRRAGWDVDVFERSPTELDGRGGGIVLQPELLRALAFAGVELPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCHHHHHHHHHCCCCCHHHCCCCCCCEEEECCCCC
T ss_conf 99689999368999999999858999899868998678860499729889999997699564751876564699948997
Q ss_pred ------CCCC-CCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf ------7777-897899986643232002322211-3320112222222222222222100001477664
Q gi|254780283|r 55 ------FATS-IRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 55 ------~~~~-~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
.+.. .....+...+.+.+. +..+..+ +++.++.+.+..++.+++|+++++|.||-|-|.+
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~l~~~l~--~~~i~~g~~v~~v~~~~~~v~v~~~dG~~~~adlvVGADG~~ 153 (386)
T PRK07236 86 VVQRQPMPQTQTSWNVLYRALRAALP--AEHYHAGEALERVEQDGDRVTAHFADGREETADLLIGADGGR 153 (386)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCC--CCEEEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCCC
T ss_conf 88761487301149999999997689--988995999999998299799998799887762899658877
No 159
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR014006 Succinate:quinone oxidoreductase (1.3.5.1 from EC) refers collectively to succinate:quinone reductase (SQR, or Complex II) and quinol:fumarate reductase (QFR) . SQR is found in aerobic organisms, and catalyses the oxidation of succinate to fumarate in the citric acid cycle and donates the electrons to quinone in the membrane. QFR can be found in anaerobic cells respiring with fumarate as terminal electron acceptor. SQR and QFR are very similar in composition and structure, despite catalysing opposite reactions in vivo. They are thought to have evolved from a common ancestor, and in Escherichia coli they are capable of functionally replacing each other . Succinate:quinone oxidoreductases consist of a peripheral domain, exposed to the cytoplasm in bacteria and to the matrix in mitochondria, and a membrane-integral anchor domain that spans the membrane (Fig. 1). The peripheral part, which contains the dicarboxylate binding site, is composed of a flavoprotein subunit, with one covalently bound FAD, and an iron-sulphur protein subunit containing three iron-sulphur clusters. The membrane-integral domain functions to anchor the peripheral domain to the membrane and is required for quinone reduction and oxidation. The anchor domain shows the largest variability in composition and primary sequence, being composed either of one large subunit, or two smaller subunits, which may, or may not, contain protoheme groups. This entry represents the flavoprotein subunit found in both the SQR and QFR enzymes. This subunit contains an N-terminal domain which binds the FAD cofactor, a central catalytic domain with an unsual fold, and a C-terminal domain whose role is unclear , , . The dicarboxylate binding site is located between the FAD and catalytic domains..
Probab=99.14 E-value=7.2e-10 Score=76.20 Aligned_cols=300 Identities=20% Similarity=0.255 Sum_probs=142.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCC---CCEEEEECCC---------CCCE---EE-E-------------------------
Q ss_conf 1999989777999999999869---9599996788---------7756---87-5-------------------------
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAM---LKPVIIAGSD---------LGGQ---LM-I------------------------- 45 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g---~~v~iie~~~---------~GG~---l~-~------------------------- 45 (321)
||||||||-|||-||+++++.| ++|.||.|=. -||. |- +
T Consensus 1 D~vIVGaGgAGlRAA~e~a~~gPp~~~~AvisKvyP~RSHtvAAQGG~~Aal~~n~d~~D~~e~H~yDTVKGsDyLaDQD 80 (636)
T TIGR01812 1 DVVIVGAGGAGLRAAVEAAKAGPPNLNVAVISKVYPTRSHTVAAQGGIAAALANNVDPDDSWEWHAYDTVKGSDYLADQD 80 (636)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHH
T ss_conf 97888186689999999973577961079995569885201535678999957786432072123041101442132589
Q ss_pred ----------------------ECCCC---------------------C-------CCC--CC------------CCCCH
Q ss_conf ----------------------01007---------------------8-------774--77------------77897
Q gi|254780283|r 46 ----------------------TESIE---------------------N-------YPG--FA------------TSIRG 61 (321)
Q Consensus 46 ----------------------~~~i~---------------------n-------~~g--~~------------~~~~~ 61 (321)
.+.++ + |=| ++ .+.+|
T Consensus 81 Ave~~~~~AP~~v~eLe~wG~PfSR~~kGDRmaiinaqkttiteeDfRDG~IaQR~FGG~~~~~Gg~~a~RTcyAADkTG 160 (636)
T TIGR01812 81 AVEYMCKEAPKAVLELERWGVPFSRLPKGDRMAIINAQKTTITEEDFRDGRIAQRPFGGASFDYGGAAARRTCYAADKTG 160 (636)
T ss_pred HHHHHHHHCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCEECCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 99999851517899997378985678677647776245420020115588353437888886556622213420012113
Q ss_pred HHHHHHHHHHHHHC-CCCCCCEE-EEECCCC-CC--CC----CCCCCCCC--CCCCCEECCCCCCCCEEEE-E-CCCCCC
Q ss_conf 89998664323200-23222113-3201122-22--22----22222222--2210000147766420246-5-277433
Q gi|254780283|r 62 DWLMEQMRQQAENF-GTKIIQDL-VVSVDLD-RH--PF----LVETQSGD--LWHADAVVIATGSEVKWLR-L-ESEKKF 128 (321)
Q Consensus 62 ~~l~~~~~~~~~~~-~v~~~~~~-V~~i~~~-~~--~~----~v~~~~g~--~~~a~~lIiAtG~~~~~~~-i-pG~~~~ 128 (321)
.-++..+.++..++ +|+|.+.. +..+-.+ ++ .. .....+|+ .++||+||||||..-|.-. - -+.-..
T Consensus 161 h~~LHTLye~~l~~~~V~ff~E~fa~~L~~~~~~GP~~~Gvva~~l~~G~~~~~~AKaVv~ATGG~GR~Y~~~tTNa~~~ 240 (636)
T TIGR01812 161 HALLHTLYEQCLKLDGVEFFNEYFALDLILDQDGGPRVRGVVAYDLKTGEIVFFRAKAVVLATGGYGRVYKFTTTNAHIN 240 (636)
T ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHCCCCCEEEEEEEEEECCCEEEEEEECCEEEEECCCHHHHCCCCCCCEEE
T ss_conf 14789899998537994275388887788745898679999999805880899960748983065102103044544223
Q ss_pred CEEECC-----CCC-CCCCCC--CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCC-CCCCCCCC-CCC---CCCCCCCC
Q ss_conf 202101-----211-111111--122100001025565431012101333222344-34332211-112---11223554
Q gi|254780283|r 129 QGFGVS-----ACA-TCDGFF--YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVH-RRSSLRSE-KIL---QEKLFLQS 195 (321)
Q Consensus 129 ~~~~v~-----~~~-~~d~~~--~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~-r~~~l~~~-~~~---~~~~~~~~ 195 (321)
.|-|+- ..| -+|=.+ |. +.-+.++|-.=.|-| | |.==+|+. .+++|... .+- .++.-. .
T Consensus 241 TGDG~A~AlraG~PqL~DMEFvQFH--PTGL~~sGiL~tEgc----R-GEGGyL~N~~GeRFM~ryGYAPetP~k~eL-A 312 (636)
T TIGR01812 241 TGDGLAMALRAGVPQLKDMEFVQFH--PTGLAPSGILITEGC----R-GEGGYLINKEGERFMERYGYAPETPEKMEL-A 312 (636)
T ss_pred CCCHHHHHHHHCCCCCCCCCCEECC--CCCCCCCCEEEEEEE----E-CCCCEEECCCCCCCCCCCCCCCCCCCCCCC-C
T ss_conf 5406888887346431684405036--745566771774013----3-276168678753103446888788750004-7
Q ss_pred CCCCCCCCCEEECCCCCCCCC-CCCCCCCEEECCCCCCCC--------------CCCCCCCCCCC-CCCCCCHHHHHCCC
Q ss_conf 433222231121148643334-444433314203210000--------------01122221112-32235656774256
Q gi|254780283|r 196 NIDFLFDTEVVDVIGSIPEPP-LFPSVSGVRLHNKKEGNF--------------FERNVDGIFIA-IGYKPNTKIFRHQL 259 (321)
Q Consensus 196 ~i~~~~~~~v~~i~g~~~~~~-~~~~~~~v~~~~~~~g~~--------------~~i~~D~vi~a-~G~~pn~~~~~~~~ 259 (321)
--++...+.++||..-..... ....--.+.++. -|++ .=.=+|.|--= +..+|-..+.-.++
T Consensus 313 pRDvVSRa~~~EireGRGv~~~~~k~~v~LDLrH--LGee~i~~RLP~i~E~A~~f~GVDPv~~pWiPVrPt~HY~MGGI 390 (636)
T TIGR01812 313 PRDVVSRAMVTEIREGRGVGSGPGKDYVYLDLRH--LGEEKIEERLPQIRELAKTFAGVDPVKEPWIPVRPTAHYSMGGI 390 (636)
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHH--CCHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf 8769999999999844888988788778876401--34788852075689999970488830057626456444118278
Q ss_pred CEECCCCEEEECCCCCCC-CCCEEEECCCCCC--------CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 180699799008885547-8982897012688--------44567899997999999999999742
Q gi|254780283|r 260 KMTNTNYIWTMPDSTATS-IPGIFAAGDVADE--------RYRQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 260 ~~~~~g~i~~~~~~~~Ts-~p~Iya~GDv~~~--------~~~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
..+.+|.+...|...-.+ ++|+||+|-|+.. +.+.+...+=.|++|+..+.+|+..-
T Consensus 391 ~T~~~G~~~~~D~~~~~~iv~GLfAaGE~ACVSVHGANRLGsNSLle~vVFGr~aG~~~ae~~~~~ 456 (636)
T TIGR01812 391 DTNYRGQVIGEDAKNNDSIVKGLFAAGECACVSVHGANRLGSNSLLELVVFGRIAGEAAAEYLAKT 456 (636)
T ss_pred EECCCCEEECCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 445842487016788886210102201022203412130605679999999799999999998606
No 160
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.14 E-value=5e-10 Score=77.12 Aligned_cols=53 Identities=25% Similarity=0.384 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHCCCCCCCE-EEEECCCCCC-CCCCCCCCCCCCCCCEECCCCC
Q ss_conf 899986643232002322211-3320112222-2222222222221000014776
Q gi|254780283|r 62 DWLMEQMRQQAENFGTKIIQD-LVVSVDLDRH-PFLVETQSGDLWHADAVVIATG 114 (321)
Q Consensus 62 ~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~-~~~v~~~~g~~~~a~~lIiAtG 114 (321)
.+++..++++++.+|++++.+ +|..+..+++ .+.|.+.+|+++.+|+||+|.|
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G 227 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG 227 (486)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEECCCCCEEECCEEEECCC
T ss_conf 9999999999985582899520788998158707999925784873277999047
No 161
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.14 E-value=1.7e-10 Score=79.89 Aligned_cols=39 Identities=44% Similarity=0.789 Sum_probs=34.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEE
Q ss_conf 751999989777999999999869959999678-877568
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQL 43 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l 43 (321)
+-||+|+||||+||+||+||++.|++++++|++ .+||.+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~ 69 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGI 69 (262)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCC
T ss_conf 3267998768505789999986796499997301468763
No 162
>TIGR01813 flavo_cyto_c flavocytochrome c; InterPro: IPR010960 This entry describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of Escherichia coli, mitochondria, and other well-characterised systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterised as a water-soluble periplasmic protein with four haem groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiration.; GO: 0000104 succinate dehydrogenase activity.
Probab=99.13 E-value=9.9e-11 Score=81.24 Aligned_cols=109 Identities=28% Similarity=0.413 Sum_probs=74.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC-CCCE--------EE---EEC---CCCC-CC----------------
Q ss_conf 1999989777999999999869-9599996788-7756--------87---501---0078-77----------------
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAM-LKPVIIAGSD-LGGQ--------LM---ITE---SIEN-YP---------------- 53 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g-~~v~iie~~~-~GG~--------l~---~~~---~i~n-~~---------------- 53 (321)
||||||+|.||||||++|.+.| .+|+|+||-+ .||. +. +.+ .|.+ -|
T Consensus 1 dvvvvGSG~AGlsAA~~A~~~G~~~vv~LEK~~~iGGNS~~~ag~mn~a~T~~Q~~~gi~DdS~el~~~DtlkgG~g~n~ 80 (487)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGLANVVVLEKMPVIGGNSAIAAGGMNAAGTDIQKKKGIEDDSPELFIKDTLKGGRGIND 80 (487)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 96898427688999999986468763787057523226899772102356848885488899677889988863278887
Q ss_pred ----------------------------------C-------CCCC--CCHHHHHHHHHHHHHHCC------CCCCCE-E
Q ss_conf ----------------------------------4-------7777--897899986643232002------322211-3
Q gi|254780283|r 54 ----------------------------------G-------FATS--IRGDWLMEQMRQQAENFG------TKIIQD-L 83 (321)
Q Consensus 54 ----------------------------------g-------~~~~--~~~~~l~~~~~~~~~~~~------v~~~~~-~ 83 (321)
| -|.+ -+|.+++..|.+.+++.+ |++..+ +
T Consensus 81 ~~L~~~la~~s~~a~~wl~d~~~~~~l~~~~~~GGhs~~R~Hrp~gG~~~G~~iv~~L~~~a~~~gskDsnlv~~~~n~~ 160 (487)
T TIGR01813 81 PELVRTLAEESADAVDWLQDCGVGFRLDDLIQLGGHSVKRAHRPTGGAASGAEIVQKLSKKAKKEGSKDSNLVETRLNSK 160 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEECCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHCCCC
T ss_conf 89999999878899887764221000111443278764643034788767840117778877433774321122100672
Q ss_pred EEECCCCCCC----CCCCC-------CCCCC---CCCCEECCCCCC
Q ss_conf 3201122222----22222-------22222---210000147766
Q gi|254780283|r 84 VVSVDLDRHP----FLVET-------QSGDL---WHADAVVIATGS 115 (321)
Q Consensus 84 V~~i~~~~~~----~~v~~-------~~g~~---~~a~~lIiAtG~ 115 (321)
|+.+-.+++. ..|.. +++.. ..+|.||||||.
T Consensus 161 v~~li~d~~G~v~Gv~V~~~Y~F~~~~~~~~~~~~a~k~Vv~AtGG 206 (487)
T TIGR01813 161 VEDLIQDDQGQVVGVVVKGDYDFKDEKKGKKIYIKAAKAVVLATGG 206 (487)
T ss_pred EEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCEEEEECC
T ss_conf 7999986971189999621225887777873267550606897576
No 163
>PRK07588 hypothetical protein; Provisional
Probab=99.13 E-value=3.6e-10 Score=77.99 Aligned_cols=110 Identities=27% Similarity=0.282 Sum_probs=73.0
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCCE-EEEEC-----------------------CCC---------
Q ss_conf 19999897779999999998699599996788---7756-87501-----------------------007---------
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD---LGGQ-LMITE-----------------------SIE--------- 50 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~---~GG~-l~~~~-----------------------~i~--------- 50 (321)
+|+|||||+|||++|+.|+|.|++++|+|+.. .+|. +.... .+.
T Consensus 2 kVlIvGaGiaGLalA~~L~r~G~~v~V~Er~~~~r~~G~~i~l~~~~~~vl~~lGl~d~l~~~~~~~~~~~~~~~~G~~~ 81 (391)
T PRK07588 2 KIAISGAGIAGATLAHWLQRTGHEPTLIERAPKLRTGGYMVDFWGVGYEVAKRMGITDQLAEAGYQIEHIRSVGPTGRVK 81 (391)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCEEEEECCHHHHHHHHCCCHHHHHHCCCCCEEEEEECCCCCEE
T ss_conf 79999932899999999986899989990389888773387238399999998799389985278850699999999888
Q ss_pred ---CCCCCC-------CCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf ---877477-------77897899986643232002322211-33201122222222222222221000014776642
Q gi|254780283|r 51 ---NYPGFA-------TSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV 117 (321)
Q Consensus 51 ---n~~g~~-------~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~ 117 (321)
++..+. ..+...+|...+.+.+. -+++++.+ +|++++.+++..+|.+++|.+.++|.||-|-|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~i~R~dL~~~L~~~~~-~~v~v~~g~~v~~i~~~~dgV~v~f~dG~~~~~DlvVGADGi~S 158 (391)
T PRK07588 82 ADLNVDVFRRMVGDDFTSLPRGDLAATIYTTIE-GQVETIFDDSIATIDEHRDGVRLTLERGTPRDFDLVIGADGLHS 158 (391)
T ss_pred EECCCHHHCCCCCCCCEEECHHHHHHHHHHHCC-CCCEEEECCEEEEEEECCCEEEEEECCCCEEEEEEEEECCCCCC
T ss_conf 743712311134775214539999999997514-48789979999999962995899987998888759995487640
No 164
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=99.13 E-value=1.4e-10 Score=80.38 Aligned_cols=40 Identities=40% Similarity=0.743 Sum_probs=36.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 8767519999897779999999998699599996788-775
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
.+.++||||||+|.|||+||+++++.|.+|+|+||.. .||
T Consensus 11 e~~d~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG 51 (576)
T PRK12843 11 ERADTDVIVIGSGAAGMAAALFAAIAGLKVLLVERTEYVGG 51 (576)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 77882869989688999999999988994899979799981
No 165
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=99.13 E-value=3.5e-10 Score=78.03 Aligned_cols=112 Identities=22% Similarity=0.245 Sum_probs=72.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CC--------CEEEEECCCC------------------------
Q ss_conf 67519999897779999999998699599996788-77--------5687501007------------------------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LG--------GQLMITESIE------------------------ 50 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~G--------G~l~~~~~i~------------------------ 50 (321)
...+|+|||||.||.++|..|+++|.+|+|+|++. ++ |.+++.-..+
T Consensus 255 ~~~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~~~A~gASGn~aG~l~P~ls~~~~~~sr~~~~a~~~a~~~~~~l~~ 334 (660)
T PRK01747 255 RNRDAAIIGGGIAGAALALALARRGWQVTLYEADEAPAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFARRFYDLEAL 334 (660)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 88718998938999999999997899689994798756556667312674025789976899999999999999998754
Q ss_pred ------CCCCC-------------------------------------------------CC--CCCHHHHHHHHHHHHH
Q ss_conf ------87747-------------------------------------------------77--7897899986643232
Q gi|254780283|r 51 ------NYPGF-------------------------------------------------AT--SIRGDWLMEQMRQQAE 73 (321)
Q Consensus 51 ------n~~g~-------------------------------------------------~~--~~~~~~l~~~~~~~~~ 73 (321)
.+-|. |. .+....+...+.++.
T Consensus 335 ~~~~~~~~~Gvl~la~~e~~~~r~~~~~~~~~~~~~~~~l~~~ea~~~~g~~~~~~Gl~~p~~G~v~P~~l~~aLl~~a- 413 (660)
T PRK01747 335 GVAFDHDWCGVLQLAWDEKSAEKIAKMLEAGLPAELARALSAEEAEALAGLPVPCGGIFYPQGGWLCPAELCRALLAAA- 413 (660)
T ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHEECCHHHHHHHHCCCCCCCCEEECCCCEECHHHHHHHHHHHC-
T ss_conf 6864414675699549868899999999746994330247999997752998777837825897756899999999864-
Q ss_pred HCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 002322211-3320112222222222222222100001477664
Q gi|254780283|r 74 NFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 74 ~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
+-+++++.+ .|+.+..+++.+++...++..+++|.||+|+|..
T Consensus 414 ~~~i~~~~~~~V~~l~~~~~~w~l~~~~~~~~~Ad~VVlA~G~~ 457 (660)
T PRK01747 414 GQGLTIHFGHEVARLERVDDQWQLDFAGGVLASAPVVVLANGHD 457 (660)
T ss_pred CCCEEEEECCEEEEEEECCCEEEEEECCCCEEECCEEEECCCCC
T ss_conf 79859992744789997498089996899286146799905610
No 166
>PRK06475 salicylate hydroxylase; Provisional
Probab=99.12 E-value=5.3e-10 Score=76.97 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=70.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCCEEEEEC-------------------------CCCCC-C-
Q ss_conf 7519999897779999999998699599996788----775687501-------------------------00787-7-
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD----LGGQLMITE-------------------------SIENY-P- 53 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~----~GG~l~~~~-------------------------~i~n~-~- 53 (321)
+.||+|||||||||++|+.|++.|++|+|+|+.. .|..+...+ .+.+. .
T Consensus 2 r~~VlIVGaGiaGL~~A~~L~~~G~~v~V~E~~~~~~~~G~gi~l~pn~~~~L~~lGl~~~l~~~~~~~~~~~~~d~~~~ 81 (400)
T PRK06475 2 RGSILIAGAGVAGLSAALELAARGWAVTIIEKAQELSEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKA 81 (400)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99799989588999999999978999999917998888884788888999999987992788843888625999607867
Q ss_pred ----------------CCC-CCCCHHHHHHHHHHHHHH-CCCCCCCE-EEEECCCCCCCCCCCC---CCCCCCCCCEECC
Q ss_conf ----------------477-778978999866432320-02322211-3320112222222222---2222221000014
Q gi|254780283|r 54 ----------------GFA-TSIRGDWLMEQMRQQAEN-FGTKIIQD-LVVSVDLDRHPFLVET---QSGDLWHADAVVI 111 (321)
Q Consensus 54 ----------------g~~-~~~~~~~l~~~~~~~~~~-~~v~~~~~-~V~~i~~~~~~~~v~~---~~g~~~~a~~lIi 111 (321)
+.| ..+...+|...+.+++.+ .++++..+ +++++..++....+.+ ++++++++|.||-
T Consensus 82 ~~~~~~~~~~~~~~~~~~p~~~i~R~~L~~~L~~~~~~~~~i~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~adlvIG 161 (400)
T PRK06475 82 RPLLHMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIA 161 (400)
T ss_pred CEEEEECCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEEECCCCCEEEECCEEEE
T ss_conf 45652024432222578965997789999999999974899489738789999952896048997389866997068996
Q ss_pred CCCCCC
Q ss_conf 776642
Q gi|254780283|r 112 ATGSEV 117 (321)
Q Consensus 112 AtG~~~ 117 (321)
|-|.+.
T Consensus 162 ADGi~S 167 (400)
T PRK06475 162 CDGVWS 167 (400)
T ss_pred CCCCCC
T ss_conf 699763
No 167
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.12 E-value=2.8e-10 Score=78.58 Aligned_cols=36 Identities=31% Similarity=0.385 Sum_probs=33.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 519999897779999999998699599996788775
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG 41 (321)
|||+|||||..|+++|++|++.|++|+|+|++..+.
T Consensus 1 yDv~VIGaGi~Gls~A~~La~~G~~V~vle~~~~~~ 36 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSSRAQ 36 (365)
T ss_pred CCEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 929999932999999999997899499998999997
No 168
>PRK05868 hypothetical protein; Validated
Probab=99.11 E-value=5.4e-10 Score=76.93 Aligned_cols=111 Identities=21% Similarity=0.245 Sum_probs=75.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCCE-EEEE-------------------------CCCCC-----
Q ss_conf 519999897779999999998699599996788---7756-8750-------------------------10078-----
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD---LGGQ-LMIT-------------------------ESIEN----- 51 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~---~GG~-l~~~-------------------------~~i~n----- 51 (321)
++|+|+|||+|||++|+.|.|.|++|+|+|+.. .+|+ +... ..+.+
T Consensus 2 ~kVlIvGaGiAGlalA~~L~r~G~~VtV~Er~p~~r~~G~~i~l~~~a~~vL~~mGl~d~~~~~~~~~~~~~~~d~~G~~ 81 (372)
T PRK05868 2 KTVLVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQERKTRIRGASVVDRDGNE 81 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHHCCCCCCEEEEECCCCE
T ss_conf 99999898889999999998589988999579998889966746869999999878978998615786423999489989
Q ss_pred -------CC-CCC-----CCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf -------77-477-----77897899986643232002322211-33201122222222222222221000014776642
Q gi|254780283|r 52 -------YP-GFA-----TSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV 117 (321)
Q Consensus 52 -------~~-g~~-----~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~ 117 (321)
.| +.+ ..+...+|.+-+.... +-+++++.+ +++.++.+.....|+.++|.+.++|.||-|-|.+.
T Consensus 82 l~~~~~~~~~g~~~~~~~~~i~R~dL~~~L~~a~-~~~v~~~~g~~v~~i~~~~~~V~V~f~dg~~~~~DlVIGADGi~S 160 (372)
T PRK05868 82 LSRDTESTPTGGPINSPDIELLRDDLVELLYGAT-QPTVEYLFDDSISTLQDDGAAVRVTFERAAAREFDLVIGADGLHS 160 (372)
T ss_pred EEECCCCCCCCCCCCCCEEEHHHHHHHHHHHHHC-CCCEEEEECCEEEEEEECCCEEEEEEECCCEEEEEEEEECCCCCH
T ss_conf 8752666655675688400031999999998634-588099957888999964997999990798578658997478741
No 169
>PRK06996 hypothetical protein; Provisional
Probab=99.11 E-value=7e-10 Score=76.30 Aligned_cols=116 Identities=23% Similarity=0.340 Sum_probs=66.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHC----CCCEEEEECCCC---C--CEEE-EE--------------------CCCC
Q ss_conf 987675199998977799999999986----995999967887---7--5687-50--------------------1007
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARA----MLKPVIIAGSDL---G--GQLM-IT--------------------ESIE 50 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~----g~~v~iie~~~~---G--G~l~-~~--------------------~~i~ 50 (321)
|+..+|||+||||||.|++.|..|+|. ++++.++|+... . .+.+ .. ..++
T Consensus 7 m~~~d~DV~IvGaGpvGl~lA~~Lar~~~~~~~~v~lie~~~~~~~~~d~Ra~al~~~s~~~L~~lG~w~~~~~~i~~~~ 86 (397)
T PRK06996 7 MAAPDYDIAIVGAGPVGLALAGWLARRSATRPLSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIH 86 (397)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCCCCCCEEEEE
T ss_conf 99999888999927999999999960168789669997689866678999399975789999998799845687425999
Q ss_pred -----------------CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE-EEECCCCCCCCC--CCCCCC-CCCCCCEE
Q ss_conf -----------------877477778978999866432320023222113-320112222222--222222-22210000
Q gi|254780283|r 51 -----------------NYPGFATSIRGDWLMEQMRQQAENFGTKIIQDL-VVSVDLDRHPFL--VETQSG-DLWHADAV 109 (321)
Q Consensus 51 -----------------n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~-V~~i~~~~~~~~--v~~~~g-~~~~a~~l 109 (321)
+.|.+---++...+...+.+.+...++.++.+. +.....+.+..+ +.+.++ ++++++.|
T Consensus 87 v~~~~~~g~~~~~~~~~~~~~lg~iv~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~a~ll 166 (397)
T PRK06996 87 VSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTGVTWLTSTTARAPAQDADGVTLALDTPQGARTLRARIA 166 (397)
T ss_pred EEECCCCCCEECCHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCEEEEECCCCCCEEEEECEE
T ss_conf 94057766211265442885223544379999999999974898798344514577636745899605998659981899
Q ss_pred CCCCCCC
Q ss_conf 1477664
Q gi|254780283|r 110 VIATGSE 116 (321)
Q Consensus 110 IiAtG~~ 116 (321)
|-|-|+.
T Consensus 167 VgaDG~~ 173 (397)
T PRK06996 167 VQAEGGL 173 (397)
T ss_pred EECCCCC
T ss_conf 9959998
No 170
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.10 E-value=2.1e-10 Score=79.28 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=34.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 67519999897779999999998699599996788-775
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
.++||||||+|.|||+||++++..|.+|+|+||.. +||
T Consensus 5 ~e~DVvVVG~G~AGl~AAi~Aae~Ga~V~vlEK~~~~GG 43 (552)
T PRK12844 5 VTVDVVVVGSGGGGMVAALAAASSGLETLIVEKQPKVGG 43 (552)
T ss_pred CEECEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 720979989678999999999988996899988999666
No 171
>PRK07121 hypothetical protein; Validated
Probab=99.10 E-value=7.6e-10 Score=76.09 Aligned_cols=39 Identities=28% Similarity=0.520 Sum_probs=34.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 767519999897779999999998699599996788-775
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
..++||||||+|.|||+||+++++.|.+|+|+||.. .||
T Consensus 18 d~e~DVvVVGsG~AGl~AA~~Aae~Ga~VivlEK~~~~GG 57 (491)
T PRK07121 18 DDEADVVVVGFGAAGACAAVEAAAAGARVLVLERAAGAGG 57 (491)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 6876989989679999999999988992899954899995
No 172
>pfam00890 FAD_binding_2 FAD binding domain. This family includes members that bind FAD. This family includes the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase.
Probab=99.09 E-value=8.8e-10 Score=75.71 Aligned_cols=35 Identities=43% Similarity=0.679 Sum_probs=31.9
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 19999897779999999998699599996788-775
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
||+|||+|.|||+||+.+++.|.+|+|+||.. .||
T Consensus 1 DVvVIG~G~AGl~AAi~Aae~Ga~VillEk~~~~gG 36 (401)
T pfam00890 1 DVVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFGG 36 (401)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 989998869999999999978994899978999997
No 173
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.3e-10 Score=80.51 Aligned_cols=113 Identities=27% Similarity=0.348 Sum_probs=72.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-----------CCCCE--EEEECCC--------------------C
Q ss_conf 6751999989777999999999869959999678-----------87756--8750100--------------------7
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-----------DLGGQ--LMITESI--------------------E 50 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-----------~~GG~--l~~~~~i--------------------~ 50 (321)
.+|||+|||||-||..||+.++|+|.+++|+--+ ..||- -....+| -
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~L 82 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRML 82 (621)
T ss_pred CCCCEEEECCCCCCHHHHHHHHCCCCEEEEEECCCCCEEECCCCCCCCCCCCCEEEEEEHHCCCHHHHHHHHCCCCHHHC
T ss_conf 87856998998420477776643698079997377744650356445773553267752412455777666507865333
Q ss_pred CC---CC---CCCCCCHHHHHHHHHHHHHH-CCCCCCCEEEEECCCCCC--CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 87---74---77778978999866432320-023222113320112222--222222222222100001477664
Q gi|254780283|r 51 NY---PG---FATSIRGDWLMEQMRQQAEN-FGTKIIQDLVVSVDLDRH--PFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 51 n~---~g---~~~~~~~~~l~~~~~~~~~~-~~v~~~~~~V~~i~~~~~--~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
|- |. .+...+...+...+++.+++ -|+.++.+.|+.+..+++ ..-|.+.+|..+.+++||++||.-
T Consensus 83 N~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 83 NSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHCCCCEEEEEEECCCCEEECCEEEEEECCC
T ss_conf 677762104506544289999999999854999552476667871337976899992787851068799963344
No 174
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.09 E-value=7.6e-10 Score=76.09 Aligned_cols=100 Identities=18% Similarity=0.212 Sum_probs=77.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-E
Q ss_conf 751999989777999999999869959999678877568750100787747777897899986643232002322211-3
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-L 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~ 83 (321)
-++|+|||||+-|+.+|..+++.|.+|+|+|+.+. ++ +... .+++...+++++++.|++++.+ .
T Consensus 137 ~k~vvViGgG~IGlE~A~~l~~~G~~Vtvve~~~~---il-----------~~~~-d~~~~~~~~~~l~~~Gv~i~~~~~ 201 (427)
T TIGR03385 137 VDRVVIIGGGYIGLEMVEALRERGKNVTLIHRSDK---IL-----------NKLF-DEEMNQIVEEELEKHEIELRLNEE 201 (427)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC-----------CCCC-CHHHHHHHHHHHHHCCCEEEECCE
T ss_conf 98899999639999999999976998999984683---36-----------5548-999999999999975979997988
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEE
Q ss_conf 32011222222222222222210000147766420246
Q gi|254780283|r 84 VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLR 121 (321)
Q Consensus 84 V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ 121 (321)
+.++..++. .+...+|+++.+|.+|+|+|..|+.--
T Consensus 202 v~~i~~~~~--~~~l~~g~~i~~D~vi~a~G~~Pn~~~ 237 (427)
T TIGR03385 202 VDSIIGEER--VGVITSGGVYQADMVILAIGVKPNSEL 237 (427)
T ss_pred EEEEECCCC--EEEEECCCEEECCEEEECCCCCCCCCC
T ss_conf 999987887--899946999972899988774676424
No 175
>PRK06753 hypothetical protein; Provisional
Probab=99.08 E-value=9e-10 Score=75.65 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=71.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCCEEEEEC-------------CC------------CC------
Q ss_conf 19999897779999999998699599996788----775687501-------------00------------78------
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD----LGGQLMITE-------------SI------------EN------ 51 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~----~GG~l~~~~-------------~i------------~n------ 51 (321)
+|+||||||+||++|+.|++.|++++|+|+.. .|..+...+ .+ .+
T Consensus 2 kV~IVGaGiaGL~~A~~L~~~G~~v~V~Er~~~~~~~g~gi~l~~~~l~~L~~~gl~~~l~~~~~~~~~~~~~~~~g~~~ 81 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHTVKVFEKNESVTEIGAGIGIGDNVLKKLGNHDLAKGIKNAGQILSTMNVLDDKGTLL 81 (373)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCEE
T ss_conf 89999945899999999997799999988899988776199988999999998798489996077873299990999896
Q ss_pred ----CCC-C-CCCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf ----774-7-777897899986643232002322211-33201122222222222222221000014776642
Q gi|254780283|r 52 ----YPG-F-ATSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV 117 (321)
Q Consensus 52 ----~~g-~-~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~ 117 (321)
++. . ...+....+.+.+.+.+.+-. +..+ ++++++.+++..++..++|++.++|.||-|-|.+.
T Consensus 82 ~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~~--i~~~~~~~~i~~~~~~v~v~~~dg~~~~~DlvVGADG~~S 152 (373)
T PRK06753 82 TKVKLKSNTLNVTLPRQTLIDIIKSYVKEDT--IFTNHEVTKIENETDKVTIHFAEQESEAFDLCIGADGIHS 152 (373)
T ss_pred EEEECCCCCCEEEECHHHHHHHHHHHCCCCE--EEECCEEEEEEEECCEEEEEECCCCEEEEEEEEECCCCCC
T ss_conf 7620477883489809999999987474587--9958899999930998999987997988879997488776
No 176
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.08 E-value=1.1e-09 Score=75.15 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=32.3
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 87675199998977799999999986995999967
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG 36 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~ 36 (321)
.+++|||+|||+|-|||+||+++++.|.+|+|+++
T Consensus 30 ~~~~~DVlVIGsG~AGL~AAi~aa~~G~~V~vl~~ 64 (638)
T PRK07573 30 NKRKFDIIVVGTGLAGASAAATLGELGYNVKVFCY 64 (638)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 46648889999669999999999974995699992
No 177
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.08 E-value=3.9e-10 Score=77.75 Aligned_cols=288 Identities=18% Similarity=0.195 Sum_probs=141.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHH-------HHHC
Q ss_conf 767519999897779999999998699599996788775687501007877477778978999866432-------3200
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQ-------AENF 75 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~-------~~~~ 75 (321)
...++|+|+|=||||.+.|-+|.+.|+.|+-+|.=. +-+-+ .++ +.+-....++.+.+.+- ..+|
T Consensus 399 ~tg~~VLVvGlGPAG~tLsH~Lln~Gh~Vv~IDGLK----IepLp--~~~--~~pir~~~~l~~~L~eR~~~GFGGVaEy 470 (1048)
T PRK06567 399 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK----ITPLP--FDV--HKPIKFWHEYKNLLSERMPRGFGGVAEY 470 (1048)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCEEEECCEE----ECCCC--HHH--CCCCHHHHHHHHHHHHHHHCCCCCEEEC
T ss_conf 899648999248652018899874787289865445----20287--465--2641238998765666530365640202
Q ss_pred CCCCCCEE----EEECCCC-CCCCC----------CCCCCCCCCCCCEECCCCCC-CCEEEEECCCCCCCEEECCCCCC-
Q ss_conf 23222113----3201122-22222----------22222222210000147766-42024652774332021012111-
Q gi|254780283|r 76 GTKIIQDL----VVSVDLD-RHPFL----------VETQSGDLWHADAVVIATGS-EVKWLRLESEKKFQGFGVSACAT- 138 (321)
Q Consensus 76 ~v~~~~~~----V~~i~~~-~~~~~----------v~~~~g~~~~a~~lIiAtG~-~~~~~~ipG~~~~~~~~v~~~~~- 138 (321)
|++.+.++ +..+... ...|. ++.++--.+-++++-+|+|+ .|+.+++++.. .+|+..+..
T Consensus 471 git~rwdkn~l~~i~l~l~rr~~f~~~ggvr~ggtlt~~~a~~lgfdhia~a~gag~p~~~~~~n~l---arGvr~asdf 547 (1048)
T PRK06567 471 GITVRWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFE---AKGVKTASDF 547 (1048)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCEEECCEEECCEEEHHHHHHCCCCEEEEECCCCCCCCCCCCCCH---HHHHHHHHHH
T ss_conf 3567744208999999997752564635455456202989987487706743158998502666514---6677789999
Q ss_pred -----CCCCCCC----C----CCEEEEECCCCCCCCEEEEEC--------CCCC--------------------------
Q ss_conf -----1111112----2----100001025565431012101--------3332--------------------------
Q gi|254780283|r 139 -----CDGFFYK----N----KDVIVVGGGNTAAEEALHLAK--------IARR-------------------------- 171 (321)
Q Consensus 139 -----~d~~~~~----~----k~v~ViGgG~~g~e~A~~L~~--------~~~~-------------------------- 171 (321)
.-+...+ + -.++|||||-+|+|.|.++.. ++++
T Consensus 548 lM~Lqltga~~~~s~anlqvrlP~vVIGgGLTaiD~aTE~~ayY~~qVekf~~~yv~~~~~eEe~~Ia~EFL~Har~~r~ 627 (1048)
T PRK06567 548 LMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKE 627 (1048)
T ss_pred HHHHHHCCCHHCCCCCCEEEECCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99987343011055324055235699858740243667888888999999999999823787889999999999999997
Q ss_pred ----------------CCCCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCC
Q ss_conf ----------------2234434332211112------112235544332222311211486433344444333142032
Q gi|254780283|r 172 ----------------VTIVHRRSSLRSEKIL------QEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNK 229 (321)
Q Consensus 172 ----------------Vtli~r~~~l~~~~~~------~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~ 229 (321)
||+++|+. +..+|.. +.++ .++||.+..+.++.++.-|.... +.++++.+.
T Consensus 628 ~~~~~e~~~Ll~~WGGVTI~YRk~-L~dSPAYrlNhEEl~kA-LeEGI~f~E~l~P~~i~~D~~gh-----v~~v~f~~~ 700 (1048)
T PRK06567 628 AKNNEELRKVFNKLGGATVYYRGR-LQDSPAYKLNHEELIYA-LALGVDFKENMQPLRINVDKYGH-----VESVEFENR 700 (1048)
T ss_pred HHCCHHHHHHHHHHCCEEEEECCC-CCCCCCHHHCHHHHHHH-HHHHHHHHHCCCCEEEECCCCCC-----EEEEEECCE
T ss_conf 440668999999838869998267-66695212068999999-97214566248851885156676-----325785011
Q ss_pred CC--------CCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCCC--CCCEEEECCCCCCCHHHHHHHH
Q ss_conf 10--------0000112222111232235656774256180699799008885547--8982897012688445678999
Q gi|254780283|r 230 KE--------GNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATS--IPGIFAAGDVADERYRQAITAA 299 (321)
Q Consensus 230 ~~--------g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~Ts--~p~Iya~GDv~~~~~~~~~~A~ 299 (321)
.. .....+.........+..|+.+.. +.....+........|. ...|=.-||+.-.-.-.++.||
T Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----~~~~~~~~~~g~~~~~~~~~~~iSffGD~HP~y~GsVVKAm 775 (1048)
T PRK06567 701 NRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIV-----IKAKTVIMAIGIENNTQFDEDKYSYFGDCNPKYSGSVVKAL 775 (1048)
T ss_pred ECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCEEEECCCCCCCCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 0124440342024553334432233456654444-----44675122104557655689768882689987775488876
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 97999999999999
Q gi|254780283|r 300 AMGCMAALEVEHYL 313 (321)
Q Consensus 300 ~~G~~Aa~~i~~yl 313 (321)
++++..=-.|.+.|
T Consensus 776 ASAK~gYp~I~~~l 789 (1048)
T PRK06567 776 ASSKEGYEAINKKL 789 (1048)
T ss_pred HHCCCCCHHHHHHH
T ss_conf 64135548999998
No 178
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.06 E-value=9.9e-10 Score=75.40 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=38.2
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 98767519999897779999999998699599996788775
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG 41 (321)
|.+++|||+|||||..|.++|++|+++|++++|+|+++++.
T Consensus 1 ~~~~e~DVvIIGgGi~Ga~iArdla~rGl~v~LvEk~D~a~ 41 (545)
T PRK11101 1 RDSQETDVIIIGGGATGAGIARDCALRGLRCILVERHDIAT 41 (545)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99861768999986899999999986799399998997616
No 179
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.06 E-value=7.8e-10 Score=76.02 Aligned_cols=101 Identities=18% Similarity=0.210 Sum_probs=82.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 6751999989777999999999869959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
.-..++|||||+-|+..|..+++.|.+|+|+++.+. ++ |.+. +++.+.+++.+++.+++++.+
T Consensus 177 ~P~~l~ViGgG~ig~E~A~~~~~lG~~Vtlv~~~~~---~L--------~~~d-----~~~~~~~~~~l~~~gv~i~~~~ 240 (467)
T PRK07845 177 LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDR---VL--------PGED-----ADAAAVLEEVFARRGMTLLKRS 240 (467)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC--------CCCC-----HHHHHHHHHHHHHCCEEEECCC
T ss_conf 898699989879999999999973987999995574---45--------4318-----8899999999997690997288
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEE
Q ss_conf 33201122222222222222221000014776642024
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~ 120 (321)
++.++..+++.+.+.+.+|++++++.+++|+|-.|+.-
T Consensus 241 ~~~~v~~~~~~~~v~~~~g~~i~~d~vl~a~Gr~Pn~~ 278 (467)
T PRK07845 241 RAESVTRTGDGVLVTLTDGRTVEGSHALMAVGSVPNTA 278 (467)
T ss_pred EEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCCC
T ss_conf 79999980982699988997998779999545025525
No 180
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.06 E-value=6.7e-10 Score=76.41 Aligned_cols=100 Identities=20% Similarity=0.215 Sum_probs=81.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 6751999989777999999999869959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
.-++++|||||+-|+..|..+++.|.+|+|+++.+ +++ |.+ .+++.+.+.+++++.+++++.+
T Consensus 175 ~Pk~vvIIGgG~ig~E~A~~~~~lG~~Vtiv~~~~---~ll--------~~~-----d~~~~~~l~~~l~~~gI~i~~~~ 238 (465)
T PRK05249 175 LPRSLIIYGAGVIGCEYASIFRGLGVKVDLINTRD---RLL--------SFL-----DDEISDALSYHFRNSGVVIRHNE 238 (465)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCEEEEEECCC---CCH--------HHC-----CHHHHHHHHHHHHHCCCEEEECC
T ss_conf 79759999998217999999996098778972166---000--------221-----89999999999998792999798
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf 3320112222222222222222100001477664202
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
++.++..+++...+..++|+++++|.|++|+|-.|+.
T Consensus 239 ~v~~i~~~~~~~~v~~~~g~~i~~D~Vl~a~Gr~pn~ 275 (465)
T PRK05249 239 EYEKVEGGDDGVILHLKSGKKIKADCLLYANGRTGNT 275 (465)
T ss_pred EEEEEEEECCEEEEEECCCCEEEEEEEEECCCCCCCC
T ss_conf 8999996087679994799599870899887666676
No 181
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.05 E-value=2e-09 Score=73.67 Aligned_cols=102 Identities=16% Similarity=0.350 Sum_probs=78.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
..-++++|||||+.|+..|..+++.|.+|+|+++.+. ++ |.+. +++.+.+.+++++.|++++.+
T Consensus 173 ~~Pk~v~ViGgG~ig~E~A~~~~~lG~~Vtii~~~~~---~l--------~~~D-----~~~~~~~~~~l~~~gi~i~~~ 236 (464)
T PRK05976 173 TLPKSLVVVGGGYIGLEWGSMLRKFGVEVTVVEAADR---IL--------PTYD-----AELTKPVARLLKKLGVRVLTG 236 (464)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC--------CCCC-----HHHHHHHHHHHHHCCCEEEEC
T ss_conf 4895599989968999999999953986999985365---54--------3338-----889999999999769799808
Q ss_pred -EEEECCCCCCCCCCCCCCCC--CCCCCEECCCCCCCCEEE
Q ss_conf -33201122222222222222--221000014776642024
Q gi|254780283|r 83 -LVVSVDLDRHPFLVETQSGD--LWHADAVVIATGSEVKWL 120 (321)
Q Consensus 83 -~V~~i~~~~~~~~v~~~~g~--~~~a~~lIiAtG~~~~~~ 120 (321)
++.++..+++...+...+|+ .+++|.|++|+|-.|+.-
T Consensus 237 ~~v~~~~~~~~~~~~~~~~g~~~~i~~D~vl~a~Gr~Pn~~ 277 (464)
T PRK05976 237 AKVLGLTLDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTE 277 (464)
T ss_pred CEEEEEEECCCEEEEEECCCCEEEEEECEEEEECCCCCCCC
T ss_conf 88999994399899998289779998368999148755635
No 182
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=99.05 E-value=1.2e-09 Score=74.86 Aligned_cols=127 Identities=22% Similarity=0.289 Sum_probs=83.6
Q ss_pred EEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC---CCCEEEEECC---CC--------CCC-------CCC-------
Q ss_conf 199998977799999999986--99599996788---7756875010---07--------877-------477-------
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARA--MLKPVIIAGSD---LGGQLMITES---IE--------NYP-------GFA------- 56 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~--g~~v~iie~~~---~GG~l~~~~~---i~--------n~~-------g~~------- 56 (321)
||+|||||+|||+.|.+|.+. +++++|+|++. ....-+|..+ .. .|. +..
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~tW~fW~~~~~~~~~~~~~~W~~~~v~~~~~~~~l~~~~ 80 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEFEDLGPLAPCVEHSWPGYEVRFPDGRRKLIGRG 80 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHCEECCEEEEECCCCEEECCCC
T ss_conf 98999952999999999974089981999978988888998385457178777577764587967999289974766887
Q ss_pred -CCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEEC
Q ss_conf -77897899986643232002322211332011222222222222222210000147766420246527743320210
Q gi|254780283|r 57 -TSIRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGV 133 (321)
Q Consensus 57 -~~~~~~~l~~~~~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v 133 (321)
..+....+.+.+.+.+.+.++.++.+.|..+...+....|.+++|+.++++.|+=+.|.......-.+++.|.|.-+
T Consensus 81 Y~~i~s~~f~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~V~Dsr~~~~~~~~~~l~Q~F~G~~I 158 (374)
T pfam05834 81 YGRVSSDRLHEELLRRCAENGVIRLNAKVASVDAEPVESLVVLEDGRTIRARLVIDARGASPSGALTVGYQTFYGVEV 158 (374)
T ss_pred CEEEEHHHHHHHHHHHHHHCCCEEECCEEEEEECCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEE
T ss_conf 079888999999999986579699913778975378705999269958744499947876677888861489999999
No 183
>PRK08132 hypothetical protein; Provisional
Probab=99.05 E-value=3.2e-09 Score=72.46 Aligned_cols=115 Identities=18% Similarity=0.351 Sum_probs=73.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---CCEE--EE------------ECC-----------------
Q ss_conf 7675199998977799999999986995999967887---7568--75------------010-----------------
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL---GGQL--MI------------TES----------------- 48 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~---GG~l--~~------------~~~----------------- 48 (321)
..+++|+||||||+||++|..|++.|.+++|+|+... ..+- .. ...
T Consensus 21 p~~tpVlIVGaGPvGL~lA~~L~~~Gv~~~vvEr~~~~~~~pRA~~~~~rtmeil~~lGl~~~i~~~g~~~~~~~~~~~~ 100 (549)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFSKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (549)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECHHHHHHHHHCCCHHHHHHCCCCCCCCEEEECC
T ss_conf 88699999992579999999999879999999599999999978888989999999869928999617744464488568
Q ss_pred --CCCC---C--C--CCC--CCCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCC--CCCC-CCCCCEECCC
Q ss_conf --0787---7--4--777--789789998664323200-2322211-3320112222222222--2222-2210000147
Q gi|254780283|r 49 --IENY---P--G--FAT--SIRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVET--QSGD-LWHADAVVIA 112 (321)
Q Consensus 49 --i~n~---~--g--~~~--~~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~--~~g~-~~~a~~lIiA 112 (321)
+..+ + + ++. .++=.++-..+.+.+.++ ++++..+ +++++..+.+..+++. .+|. ++++++||-|
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~l~Q~~lE~~L~~~~~~~~~v~vr~g~ev~~~~q~~d~V~~~v~~~~g~~~vrA~ylVGa 180 (549)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYIEGYLVDRAQALPNIDLRWKNKVTGVEQHADGVVLTVETPDGPYTLEADWVIAC 180 (549)
T ss_pred CEEEEECCCCCCCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCCEEEEEEEEEEC
T ss_conf 65776047888887668158679999999999999868997899576899999849946999987998689998899863
Q ss_pred CCCCC
Q ss_conf 76642
Q gi|254780283|r 113 TGSEV 117 (321)
Q Consensus 113 tG~~~ 117 (321)
-|++.
T Consensus 181 DGarS 185 (549)
T PRK08132 181 DGARS 185 (549)
T ss_pred CCCCC
T ss_conf 77877
No 184
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.04 E-value=1.4e-09 Score=74.55 Aligned_cols=173 Identities=24% Similarity=0.295 Sum_probs=99.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC---CEEEEEC-CCCCCEEEEE----CCCCCCCC-----C-CC--------------
Q ss_conf 519999897779999999998699---5999967-8877568750----10078774-----7-77--------------
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAML---KPVIIAG-SDLGGQLMIT----ESIENYPG-----F-AT-------------- 57 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~---~v~iie~-~~~GG~l~~~----~~i~n~~g-----~-~~-------------- 57 (321)
++|+|||+|++|+..|..|.+.-. .+.|||. .+.|+.+-.. .++-|.|. + |+
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~~~~~ 81 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQKQLQ 81 (474)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 51899788657999999998478877756785355545787557888821442162023544589981689999974255
Q ss_pred ------C--------CCHHHHHHHHHHHHHHC----C---CCCCCEEEEECCCC--CCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf ------7--------89789998664323200----2---32221133201122--222222222222221000014776
Q gi|254780283|r 58 ------S--------IRGDWLMEQMRQQAENF----G---TKIIQDLVVSVDLD--RHPFLVETQSGDLWHADAVVIATG 114 (321)
Q Consensus 58 ------~--------~~~~~l~~~~~~~~~~~----~---v~~~~~~V~~i~~~--~~~~~v~~~~g~~~~a~~lIiAtG 114 (321)
. .+..-+-+|+.+++..| . +.++..+.+++... ...+.+.+.+|.+..++-+|+|||
T Consensus 82 ~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~Vlatg 161 (474)
T COG4529 82 RYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIVLATG 161 (474)
T ss_pred CCCCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEECCCCCEEEEECCCCCEEEEEEEEEECC
T ss_conf 65775443776534661569999999999999973676404677644430100457735789658887045017999436
Q ss_pred CCCEEEEECCCCCCCE--EEC--CCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCC--CCCCCCCCCC
Q ss_conf 6420246527743320--210--121111111112210000102556543101210133--3222344343
Q gi|254780283|r 115 SEVKWLRLESEKKFQG--FGV--SACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIA--RRVTIVHRRS 179 (321)
Q Consensus 115 ~~~~~~~ipG~~~~~~--~~v--~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~--~~Vtli~r~~ 179 (321)
-.+..++.-. ..+.+ +-+ .|-+....-...+.+|+|+|+|-+-+|....|++.+ ..||++.|+.
T Consensus 162 h~~~~~~~~~-~~~~~~~~~ia~~~~~~~ld~v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrG 231 (474)
T COG4529 162 HSAPPADPAA-RDLKGSPRLIADPYPANALDGVDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRG 231 (474)
T ss_pred CCCCCCCHHH-HCCCCCCCEECCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 8899742122-113788643316558851013467783689637720577999875027756558984256
No 185
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.03 E-value=1.9e-09 Score=73.78 Aligned_cols=37 Identities=35% Similarity=0.592 Sum_probs=33.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 67519999897779999999998699599996788-775
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
.++||||||+| |||+||++++..|.+|+|+||.. +||
T Consensus 15 ~e~DVvVVGsG-AGl~AAi~Aae~G~~VivlEK~~~~GG 52 (566)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSSYVGG 52 (566)
T ss_pred CEECEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 55497998846-999999999988993899968999985
No 186
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.02 E-value=2.9e-09 Score=72.68 Aligned_cols=98 Identities=30% Similarity=0.477 Sum_probs=76.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 7519999897779999999998699599996788-77568750100787747777897899986643232002322211-
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
..+++|||+|+.||.+|.+|++.|++++++|... +++++.. +++.+.+.+.++.++++++.+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~----------------~~~~~~~~~~l~~~gv~~~~~~ 199 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLD----------------PEVAEELAELLEKYGVELLLGT 199 (415)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCC----------------HHHHHHHHHHHHHCCCEEECCC
T ss_conf 773999893499999999998779938999756642331121----------------8899999999997294898265
Q ss_pred EEEECCCCCCCCC---CCCCCCCCCCCCEECCCCCCCCE
Q ss_conf 3320112222222---22222222210000147766420
Q gi|254780283|r 83 LVVSVDLDRHPFL---VETQSGDLWHADAVVIATGSEVK 118 (321)
Q Consensus 83 ~V~~i~~~~~~~~---v~~~~g~~~~a~~lIiAtG~~~~ 118 (321)
.+..++...+... +...++..+.+|.+++++|..|+
T Consensus 200 ~v~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 200 KVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred EEEEEEECCCCEEEEEEEEEEEEEECCCEEEECCCCCCC
T ss_conf 269999258621554456653035223369878975776
No 187
>PRK13748 putative mercuric reductase; Provisional
Probab=99.02 E-value=2.4e-09 Score=73.20 Aligned_cols=98 Identities=23% Similarity=0.232 Sum_probs=78.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-E
Q ss_conf 751999989777999999999869959999678877568750100787747777897899986643232002322211-3
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-L 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~ 83 (321)
-..++|||||+-|+..|...++.|.+|+|++++++ + |.+ -+++.+.+.+++++-|++++.+ .
T Consensus 270 P~~l~IIGgG~IG~E~A~~f~~lGs~VTiv~r~~l----l--------~~~-----D~ei~~~l~~~l~~~GI~i~~~~~ 332 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARSTL----F--------FRE-----DPAIGEAVTAAFRAEGIEVLEHTQ 332 (561)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC----C--------CCC-----CHHHHHHHHHHHHHCCCEEECCCE
T ss_conf 87389989868999999999864984899965765----6--------764-----999999999999976979976978
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEE
Q ss_conf 3201122222222222222221000014776642024
Q gi|254780283|r 84 VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 84 V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~ 120 (321)
+..+...++.+.+.++++ ++++|.|++|+|-.|+.-
T Consensus 333 v~~v~~~~~~~~v~~~~g-~i~~d~vLvA~GR~PNt~ 368 (561)
T PRK13748 333 ASQVAHDDGEFVLTTNHG-ELRADKLLVATGRTPNTR 368 (561)
T ss_pred EEEEEECCCEEEEEECCC-EEEECEEEEECCCEEECC
T ss_conf 999997299899996896-698578999606103454
No 188
>KOG0029 consensus
Probab=99.01 E-value=8.1e-10 Score=75.93 Aligned_cols=44 Identities=25% Similarity=0.482 Sum_probs=38.8
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCEEEE
Q ss_conf 87675199998977799999999986995999967-887756875
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-SDLGGQLMI 45 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-~~~GG~l~~ 45 (321)
+.+.++|+|||||.|||+||.+|...|++|+|+|. ++.||+++.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEE
T ss_conf 678883899898578999999999759825999714776764778
No 189
>PRK08948 consensus
Probab=99.00 E-value=2.3e-09 Score=73.29 Aligned_cols=112 Identities=19% Similarity=0.257 Sum_probs=70.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCC--------CEEEE------------------------ECCCC
Q ss_conf 5199998977799999999986---9959999678877--------56875------------------------01007
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARA---MLKPVIIAGSDLG--------GQLMI------------------------TESIE 50 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~---g~~v~iie~~~~G--------G~l~~------------------------~~~i~ 50 (321)
+||+||||||+|++.|+.|++. +++++|+|+..+- .+.+. ...++
T Consensus 1 fDV~IvGaG~vGl~lAlaL~~l~~~~l~v~lie~~~~~~~~~p~~d~Ra~al~~~s~~~L~~lGvw~~l~~~~~pi~~i~ 80 (392)
T PRK08948 1 MSVIIVGGGMAGATLALAISRLSHGALPVALIEATAPESDAHPGFDARAIALAAGTCQQLARIGVWSALADCATAITHVH 80 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCHHHHHHCCCCCEEE
T ss_conf 94999995899999999998616799849998278875445788884345756999999998799477785066300789
Q ss_pred --C--CCC---CC---CC-------CCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECC
Q ss_conf --8--774---77---77-------89789998664323200-2322211-33201122222222222222221000014
Q gi|254780283|r 51 --N--YPG---FA---TS-------IRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVI 111 (321)
Q Consensus 51 --n--~~g---~~---~~-------~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIi 111 (321)
+ -.+ +. .. +....+...+.+.+.+. ++++..+ +++.+..+.+..++..++|++++++.||.
T Consensus 81 v~d~~~~~~~~~~~~~~~~~~lg~iv~~~~l~~~L~~~l~~~~~v~~~~~~~v~~i~~~~~~v~v~l~~g~~~~a~llVg 160 (392)
T PRK08948 81 VSDRGHAGFVTLAAEDYGVAALGYVVELHDVGQRLFALLRKAPGVTLHCPARVANVARTQESVTVTLDNGETLQGKLLVA 160 (392)
T ss_pred EEECCCCCEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCCEEEEEEECCCCEEEEECCCCEEEECEEEE
T ss_conf 84078776254376660885311278799999999999975899878558768998855882799978998998378999
Q ss_pred CCCCCC
Q ss_conf 776642
Q gi|254780283|r 112 ATGSEV 117 (321)
Q Consensus 112 AtG~~~ 117 (321)
|-|+..
T Consensus 161 aDG~~S 166 (392)
T PRK08948 161 ADGSHS 166 (392)
T ss_pred ECCCCH
T ss_conf 189973
No 190
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.99 E-value=3.1e-09 Score=72.48 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=80.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
..-..++|||||+-|+.-|..+++.|.+|+|++++.+ .|++. +++.+.+.+++++-+++++.+
T Consensus 220 ~lP~~lvIIGgG~IG~E~A~if~~lGs~VTi~~r~~~------------L~~~D-----~di~~~l~~~l~~~GV~i~~~ 282 (541)
T PTZ00052 220 KSPGKTLVVGASYVALECAGFLNSLGFDVTVAVRSIV------------LRGFD-----RQCAEKVKEYMEEQGVKFKVG 282 (541)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC------------CCCCC-----HHHHHHHHHHHHHCCCEEECC
T ss_conf 4896289989869999999999975985899953776------------75657-----779999999998507499745
Q ss_pred -EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf -3320112222222222222222100001477664202
Q gi|254780283|r 83 -LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 83 -~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
.+..++..++.+.|.+.+++...+|.|++|+|-.|+.
T Consensus 283 ~~v~~v~~~~~~~~v~~~dg~~~~~d~vLvA~GR~Pnt 320 (541)
T PTZ00052 283 VLPKKLEKVNDKIKVSFSDGTVELYDTVLYATGRKGDI 320 (541)
T ss_pred EEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCCCCC
T ss_conf 48999997398269997689478812899922655645
No 191
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.99 E-value=2.7e-09 Score=72.87 Aligned_cols=102 Identities=24% Similarity=0.249 Sum_probs=78.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-E
Q ss_conf 751999989777999999999869959999678877568750100787747777897899986643232002322211-3
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-L 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~ 83 (321)
.++|+|||||+-|+.+|..+++.|.+|+|+++.+. ++ | ...+ +++.+.+++.+++.|++++.+ .
T Consensus 149 ~k~vvViGgG~ig~E~A~~l~~~G~~Vtiv~~~~~---~l--------~---~~~d-~~~~~~~~~~l~~~gv~i~~~~~ 213 (443)
T PRK09564 149 IKRIVIIGAGFIGLEVVEAAKKLGKNVRIIQLEKR---IL--------P---DSFD-KEITDVMEEELREKGVELHTSEF 213 (443)
T ss_pred CCEEEEECCHHHHHHHHHHHHHCCCEEEEEEECCC---CC--------C---CCCC-HHHHHHHHHHHHHCCCEEEECCE
T ss_conf 96599999709999999999866988999995783---45--------5---6678-99999999999977979998998
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEE
Q ss_conf 320112222222222222222100001477664202465
Q gi|254780283|r 84 VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRL 122 (321)
Q Consensus 84 V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~i 122 (321)
|.++..+++...+.++++ ++.+|.+|+|+|..|+.-.+
T Consensus 214 v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~Pn~~~l 251 (443)
T PRK09564 214 VKSLIGEDKVEGVVTNKG-EYEADVVILSTGIKPNTEFL 251 (443)
T ss_pred EEEEEECCCEEEEEECCC-EEEEEEEEECCCCCCCHHHH
T ss_conf 999992698999997798-89723899955885350787
No 192
>PRK06116 glutathione reductase; Validated
Probab=98.98 E-value=2.9e-09 Score=72.64 Aligned_cols=100 Identities=15% Similarity=0.213 Sum_probs=78.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-E
Q ss_conf 751999989777999999999869959999678877568750100787747777897899986643232002322211-3
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-L 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~ 83 (321)
-.+++|||||+-|+..|..+.+.|.+|+++++.+. ++ +.+. +++.+.+.+.+++.+++++.+ .
T Consensus 167 P~~v~IiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~---~l--------~~~D-----~~~~~~l~~~l~~~gi~i~~~~~ 230 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLHGLGSETHLFVRGDA---PL--------RGFD-----PDIRETLVEEMEKKGIQLHTNAV 230 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCC---HH--------HHCC-----HHHHHHHHHHHHHCCCEEECCCE
T ss_conf 97799999966699999999960984899994484---01--------2048-----77779999999864978963988
Q ss_pred EEECCCCC-CCCCCCCCCCCCCCCCEECCCCCCCCEEE
Q ss_conf 32011222-22222222222221000014776642024
Q gi|254780283|r 84 VVSVDLDR-HPFLVETQSGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 84 V~~i~~~~-~~~~v~~~~g~~~~a~~lIiAtG~~~~~~ 120 (321)
|..+..+. +...+.+++|+++++|.+++|+|-.|+.-
T Consensus 231 v~~v~~~~~g~~~v~~~~g~~~~~d~vl~a~Gr~Pnt~ 268 (450)
T PRK06116 231 PKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTD 268 (450)
T ss_pred EEEEEECCCCCEEEEECCCCEEEEEEEEECCCCCCCCC
T ss_conf 99999859962899987997999708999178420556
No 193
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.98 E-value=2.8e-09 Score=72.75 Aligned_cols=32 Identities=34% Similarity=0.545 Sum_probs=30.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 19999897779999999998699599996788
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
+|+|||||..|+++|++|+++|++|+|+|++.
T Consensus 2 ~VvIIGaGi~G~stA~~La~~G~~V~vler~~ 33 (416)
T PRK00711 2 RVVVLGSGVVGVTSAWYLARAGHEVTVIDRQP 33 (416)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 79999944999999999996899689996999
No 194
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.98 E-value=2.7e-09 Score=72.82 Aligned_cols=99 Identities=14% Similarity=0.168 Sum_probs=75.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 6751999989777999999999869959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
+-++|+|||||+-|+..|..+.+.|.+|+|+|+.+. +. +.+ .+++.+.+.+++++.++++..+
T Consensus 147 ~~k~vvIIGgG~IGlE~A~~l~~~G~~Vtlie~~~~---~~--------~~~-----d~~~~~~~~~~l~~~gv~~~~~~ 210 (438)
T PRK13512 147 QVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDK---IN--------KLM-----DADMNQPILDELDKREIPYRLNE 210 (438)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC--------CCC-----CHHHHHHHHHHHHHCCCEEEECC
T ss_conf 997799989558999999999972990899993573---12--------004-----99999999999986899999587
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEE
Q ss_conf 3320112222222222222222100001477664202465
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRL 122 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~i 122 (321)
.|..++.+ .+.+++|+.+.+|.+|+|+|..|+.-.+
T Consensus 211 ~v~~i~~~----~v~~~~g~~~~~D~vi~a~G~~Pn~~~~ 246 (438)
T PRK13512 211 EIDAINGN----EITFKSGKVEHYDMIIEGVGTHPNSKFI 246 (438)
T ss_pred EEEEEECC----EEEEEECCEEEECEEEEEEECCCCHHHH
T ss_conf 79999797----9999328897407899967100273678
No 195
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.97 E-value=1e-09 Score=75.33 Aligned_cols=41 Identities=34% Similarity=0.624 Sum_probs=38.4
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 98767519999897779999999998699599996788-775
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
|+.++|||||||+|.|||+||++++..|.+|+|+||.. +||
T Consensus 1 ~~~ee~DVVVVGaG~AGl~AAi~Aae~Ga~VivlEK~~~~GG 42 (560)
T PRK07843 1 MTGQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGG 42 (560)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCH
T ss_conf 998665789989678999999999988998899969999770
No 196
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase; InterPro: IPR006258 These sequences represent dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulphide. ; GO: 0004148 dihydrolipoyl dehydrogenase activity, 0050660 FAD binding, 0006118 electron transport.
Probab=98.97 E-value=4.5e-09 Score=71.59 Aligned_cols=104 Identities=24% Similarity=0.338 Sum_probs=81.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCC-CCCCCE-
Q ss_conf 751999989777999999999869959999678877568750100787747777897899986643232002-322211-
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFG-TKIIQD- 82 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~-v~~~~~- 82 (321)
=..++|||||.=|+.-|.-.+++|.+|+|+|--+ +++ |.+. .|+.+.+.+.+++-| ++|+++
T Consensus 178 P~slvIiGGGVIG~EfA~~f~~lG~~VTv~E~~d---rIL--------p~~D-----~evSk~~~~~L~~~GNv~i~~~~ 241 (481)
T TIGR01350 178 PESLVIIGGGVIGVEFASIFASLGVKVTVIEMLD---RIL--------PGED-----AEVSKVVKKKLKKKGNVKILTNA 241 (481)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC---CCC--------CCCC-----HHHHHHHHHHHHHCCCEEEECCC
T ss_conf 8566998786677889999985398089994575---003--------5431-----68999999999744984985485
Q ss_pred EEE--ECCCCCCCCC--CCCCCC---CCCCCCEECCCCCCCCEEEEEC--CCCC
Q ss_conf 332--0112222222--222222---2221000014776642024652--7743
Q gi|254780283|r 83 LVV--SVDLDRHPFL--VETQSG---DLWHADAVVIATGSEVKWLRLE--SEKK 127 (321)
Q Consensus 83 ~V~--~i~~~~~~~~--v~~~~g---~~~~a~~lIiAtG~~~~~~~ip--G~~~ 127 (321)
.|+ .+..+++.++ +..+++ +++++|++++|.|- .|+++ |+++
T Consensus 242 ~V~~~~~~~~~~~v~~~~~~~g~ge~~~~~~e~vLvavGR---~pn~~~~GLe~ 292 (481)
T TIGR01350 242 KVTGAAVEKNDDQVVVEVELEGKGEVETLTAEKVLVAVGR---KPNTEGLGLEK 292 (481)
T ss_pred EEECCEEEECCCEEEEEEEECCCCCEEEEEEEEEEEEECC---CCCCCCCCEEE
T ss_conf 4423357752878999999879980588987399998424---34767646021
No 197
>PRK07208 hypothetical protein; Provisional
Probab=98.97 E-value=1.4e-09 Score=74.48 Aligned_cols=42 Identities=31% Similarity=0.491 Sum_probs=37.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEE
Q ss_conf 767519999897779999999998699599996788-775687
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLM 44 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~ 44 (321)
+++++|+||||||+||+||.+|++.|++++|+|++. +||.+.
T Consensus 1 ~~~kkv~IiGAG~~GL~aA~~L~~~g~~v~vlEk~~~vGGl~~ 43 (474)
T PRK07208 1 TEKKSVVIIGAGPAGLTAAYELVKRGYPVTILEADPEVGGISR 43 (474)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE
T ss_conf 9987599989768999999999868997599978998754477
No 198
>PRK07538 hypothetical protein; Provisional
Probab=98.95 E-value=1.4e-08 Score=68.78 Aligned_cols=111 Identities=23% Similarity=0.249 Sum_probs=66.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC----CCCEEEEEC---------------------------------C
Q ss_conf 519999897779999999998699599996788----775687501---------------------------------0
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD----LGGQLMITE---------------------------------S 48 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~----~GG~l~~~~---------------------------------~ 48 (321)
-||+||||||+||++|+.|++.|++++|+|+.. .|..+...+ .
T Consensus 1 m~V~IvGaG~aGL~lA~~L~~~Gi~v~V~E~~~~~~~~G~gI~l~p~a~~~L~~lGl~~~l~~~g~~~~~~~~~~~~G~~ 80 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVEVFEAAPELRPLGVGINLLPHAVRELAELGLLEALDAVGIRTRELVFFNRHGQR 80 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECHHHHHHHHHCCCHHHHHHHCCCCCEEEEECCCCCE
T ss_conf 98999990589999999999789998999369988878528751879999999878978998627776327999699989
Q ss_pred CCCCC-----CC--C-CCCCHHHHHHHHHHHH-HHCCC-CCCCE-EEEECCCCCCCCCCCC-----CCCCCCCCCEECCC
Q ss_conf 07877-----47--7-7789789998664323-20023-22211-3320112222222222-----22222210000147
Q gi|254780283|r 49 IENYP-----GF--A-TSIRGDWLMEQMRQQA-ENFGT-KIIQD-LVVSVDLDRHPFLVET-----QSGDLWHADAVVIA 112 (321)
Q Consensus 49 i~n~~-----g~--~-~~~~~~~l~~~~~~~~-~~~~v-~~~~~-~V~~i~~~~~~~~v~~-----~~g~~~~a~~lIiA 112 (321)
++..| ++ | ..+...+|...+.+.+ ++++. .+..+ +++.++.+.+..++.. .++.++++|.||-|
T Consensus 81 i~~~~~g~~~g~~~p~~~i~R~~L~~~L~~~~~e~lg~~~i~~g~~v~~~~~~~~~v~~~~~~~~~~~~~~~~adllVGA 160 (413)
T PRK07538 81 IWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDAGVTVVFLGDRAGGDLVSVRADVLIGA 160 (413)
T ss_pred EEECCCCCCCCCCCCEEEECHHHHHHHHHHHHHHHCCCCEEEECCEEEEEEECCCCEEEEEECCCCCCCEEEEECEEEEC
T ss_conf 87334664457888525650999999999999975699689967789898874995299997157887239984889988
Q ss_pred CCCC
Q ss_conf 7664
Q gi|254780283|r 113 TGSE 116 (321)
Q Consensus 113 tG~~ 116 (321)
-|.+
T Consensus 161 DGi~ 164 (413)
T PRK07538 161 DGIH 164 (413)
T ss_pred CCCC
T ss_conf 8987
No 199
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=98.94 E-value=6.8e-10 Score=76.37 Aligned_cols=38 Identities=42% Similarity=0.794 Sum_probs=33.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECC-CCCCE
Q ss_conf 751999989777999999999869--959999678-87756
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAM--LKPVIIAGS-DLGGQ 42 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g--~~v~iie~~-~~GG~ 42 (321)
+-||+|+||||+||+||+||+|.| +|++|+|++ .+||.
T Consensus 21 e~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~la~GGG 61 (283)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERKLAFGGG 61 (283)
T ss_pred HCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCCC
T ss_conf 10667987897466899999842998069998511026898
No 200
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.93 E-value=4e-09 Score=71.88 Aligned_cols=102 Identities=15% Similarity=0.175 Sum_probs=76.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
..-.+++|||||+-|+..|..+++.|.+|+|+|+.+. ++ |++. +++.+.+++.+++-+++++.+
T Consensus 172 ~lPk~l~iiGgG~ig~E~A~~~~~lG~~Vtlv~~~~~---lL--------~~~D-----~~~~~~l~~~l~~~gi~i~~~ 235 (466)
T PRK06115 172 EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDR---IC--------PGTD-----GETAKTLQKALAKQGMRFKLG 235 (466)
T ss_pred HCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC--------CCCC-----CHHHHHHHHHHHHCCCEEEEC
T ss_conf 4896799995858999999999861984789983342---14--------3434-----123688888998769499958
Q ss_pred -EEEECCCCCCCCCCCCC-----CCCCCCCCEECCCCCCCCEEE
Q ss_conf -33201122222222222-----222221000014776642024
Q gi|254780283|r 83 -LVVSVDLDRHPFLVETQ-----SGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 83 -~V~~i~~~~~~~~v~~~-----~g~~~~a~~lIiAtG~~~~~~ 120 (321)
+++.+...++...+... +++++++|.+++|+|-.|+.-
T Consensus 236 ~~v~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vl~a~Gr~Pn~~ 279 (466)
T PRK06115 236 SKVTQATAGADGVSLTLEPAAGGAAESLQADYVLVAIGRRPYTQ 279 (466)
T ss_pred CEEEEEEECCCEEEEEEEECCCCCEEEEECCEEEEEECCCCCCC
T ss_conf 98999998499699999975588504897169999416765776
No 201
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.93 E-value=6.8e-09 Score=70.53 Aligned_cols=99 Identities=26% Similarity=0.350 Sum_probs=76.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-EE
Q ss_conf 51999989777999999999869959999678877568750100787747777897899986643232002322211-33
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-LV 84 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V 84 (321)
..++|||||+-|+.-|.-..++|.+|+|+|+.+. ++ |++. +++.+.+.+++++.++++.++ .+
T Consensus 174 ~~lvIiGgG~IG~E~a~~~~~LG~~VTive~~~~---iL--------p~~D-----~ei~~~~~~~l~~~gv~i~~~~~v 237 (454)
T COG1249 174 KSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR---IL--------PGED-----PEISKELTKQLEKGGVKILLNTKV 237 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC---CC--------CCCC-----HHHHHHHHHHHHHCCEEEECCCEE
T ss_conf 8799989888999999999986997899946887---78--------8779-----999999999998589599835369
Q ss_pred EECCCCCCCCCCCCCCCC--CCCCCEECCCCCCCCEEE
Q ss_conf 201122222222222222--221000014776642024
Q gi|254780283|r 85 VSVDLDRHPFLVETQSGD--LWHADAVVIATGSEVKWL 120 (321)
Q Consensus 85 ~~i~~~~~~~~v~~~~g~--~~~a~~lIiAtG~~~~~~ 120 (321)
..+...++...+..++++ ++++|++++|+|-.|+..
T Consensus 238 ~~~~~~~~~v~v~~~~g~~~~~~ad~vL~AiGR~Pn~~ 275 (454)
T COG1249 238 TAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTD 275 (454)
T ss_pred EEEEECCCEEEEEEECCCCCEEEEEEEEEEECCCCCCC
T ss_conf 99981698089999469776799849999327866888
No 202
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.93 E-value=7e-09 Score=70.46 Aligned_cols=41 Identities=34% Similarity=0.374 Sum_probs=36.8
Q ss_pred CCC-CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 987-67519999897779999999998699599996788775
Q gi|254780283|r 1 MAS-HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41 (321)
Q Consensus 1 M~~-~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG 41 (321)
|+. ++|||+|||||.-|..+|..|+.+|++|+|+|+++++.
T Consensus 1 ~~~~e~~DvlVIGGGitGag~A~daa~RGl~v~LvE~~Dfas 42 (503)
T PRK13369 1 MAEPEDYDLAVIGGGINGAGIARDAAGRGLKVLLCEKDDLAQ 42 (503)
T ss_pred CCCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 998883788999967888999999996899499982687558
No 203
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.93 E-value=4.8e-09 Score=71.39 Aligned_cols=100 Identities=22% Similarity=0.308 Sum_probs=77.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-E
Q ss_conf 751999989777999999999869959999678877568750100787747777897899986643232002322211-3
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-L 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~ 83 (321)
-++++|||||+.|+..|..+++.|.+|+|+++.+ +++ |.+. +++.+.+++.+++-+++++.+ .
T Consensus 172 Pk~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~---~~l--------~~~d-----~~~~~~l~~~l~~~gi~i~~~~~ 235 (462)
T PRK06416 172 PKSLVVIGGGYIGIEFASAYASLGAEVTIIEALP---RIL--------PGFD-----KEISKLAERALKKRGIKIVTGAM 235 (462)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCC---CCC--------CCCC-----HHHHHHHHHHHHHCCCCEECCCE
T ss_conf 9769998897878899999997397689974054---323--------3457-----46668999999964985144846
Q ss_pred EEECCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCEEE
Q ss_conf 320112222222222222---2221000014776642024
Q gi|254780283|r 84 VVSVDLDRHPFLVETQSG---DLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 84 V~~i~~~~~~~~v~~~~g---~~~~a~~lIiAtG~~~~~~ 120 (321)
+.++..+++.+.+...++ +++++|.|++|+|-.|+..
T Consensus 236 v~~i~~~~~~~~v~~~~~~~~~~i~~d~vl~a~Gr~Pn~~ 275 (462)
T PRK06416 236 AKKVEQTDDGVTVTLEAGGEEETIEADYVLVAVGRRPNTE 275 (462)
T ss_pred EEEEEECCCEEEEEEECCCEEEEEEEEEEEEEECCCCCCC
T ss_conf 9999972998999995398589996329999966401644
No 204
>PRK07846 mycothione/glutathione reductase; Reviewed
Probab=98.92 E-value=5.5e-09 Score=71.05 Aligned_cols=98 Identities=20% Similarity=0.204 Sum_probs=74.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-EE
Q ss_conf 51999989777999999999869959999678877568750100787747777897899986643232002322211-33
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-LV 84 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V 84 (321)
.+++|||||+-|+..|..+++.|.+|+|+|+.+. ++ |.+. +++.+.+.+..++ +++++.+ .+
T Consensus 169 ~~~~IIGgG~ig~E~A~~~~~lG~~Vtli~~~~~---ll--------~~~D-----~~~~~~l~~~~~~-~i~i~~~~~v 231 (453)
T PRK07846 169 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSDR---LL--------RHCD-----DTISERFTEIAGK-KWDLRLGRNV 231 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCC---CC--------CCCC-----HHHHHHHHHHHHC-CEEEEECCEE
T ss_conf 6499989975799999999952992689974653---24--------4347-----8999999999864-8599957689
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEE
Q ss_conf 201122222222222222221000014776642024
Q gi|254780283|r 85 VSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 85 ~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~ 120 (321)
..+..+++.+.+.+++++++++|.|++|+|-.|+.-
T Consensus 232 ~~~~~~~~~~~v~~~~g~~i~~d~vl~a~GR~Pn~~ 267 (453)
T PRK07846 232 VGVSQDGSGVTLRLDDGSTVDADVLLVATGRVSNGD 267 (453)
T ss_pred EEEEEECCEEEEEECCCCEEEEEEEEECCCCCCCCC
T ss_conf 999970983599947996998549999777566635
No 205
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.92 E-value=4.9e-09 Score=71.34 Aligned_cols=100 Identities=20% Similarity=0.248 Sum_probs=76.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
....+++|||||+.|+..|..+++.|.+|+|+++.+. ++ |.+. +++.+.+++++++.+++++.+
T Consensus 155 ~~p~~v~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~---ll--------~~~d-----~~~~~~~~~~l~~~gv~i~~~ 218 (438)
T PRK07251 155 KLPKRLGILGGGNIGLEFAGLYNKLGSKVTVLDAAST---FL--------PREE-----PSIAALAKQYMEEDGIEFLQN 218 (438)
T ss_pred HCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC--------CCCC-----HHHHHHHHHHHHHCCCEEEEC
T ss_conf 3797699988864588999999834876899984610---02--------4446-----366899999998669599968
Q ss_pred -EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf -3320112222222222222222100001477664202
Q gi|254780283|r 83 -LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 83 -~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
++..+..++....+.. +++++++|.|++|+|-.|+.
T Consensus 219 ~~v~~v~~~~~~~~v~~-~~~~~~~d~vl~a~Gr~Pnt 255 (438)
T PRK07251 219 AHTTEVKNDGDQVVVVT-EDETYRFDALLYATGRKPNT 255 (438)
T ss_pred CEEEEEEECCCEEEEEE-ECCEEEEEEEEEECCCCCCC
T ss_conf 87999995699799998-27789861899925876666
No 206
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.91 E-value=7.6e-09 Score=70.23 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=78.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-E
Q ss_conf 751999989777999999999869959999678877568750100787747777897899986643232002322211-3
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-L 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~ 83 (321)
-.+++|||||+-|+..|..+++.|.+|+|+|+.+. ++ |.+ -+++.+.+.+.+++.+++++.+ .
T Consensus 158 P~~l~IiGgG~ig~E~A~~~~~lG~~Vtiie~~~~---il--------~~~-----D~~~~~~l~~~l~~~Gi~i~~~~~ 221 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAASL---FL--------PRE-----DRDIADNIATILRDQGVDIILNAH 221 (441)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC---CC--------CCC-----HHHHHHHHHHHHHHCCEEEECCCE
T ss_conf 96799989858999999999975987889704673---26--------631-----146899999999878859973867
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEE
Q ss_conf 3201122222222222222221000014776642024
Q gi|254780283|r 84 VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 84 V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~ 120 (321)
+.++..+++.+.+.++++ .+.+|.+++|+|-.|+.-
T Consensus 222 v~~i~~~~~~~~v~~~~~-~~~~d~vlva~Gr~Pn~~ 257 (441)
T PRK08010 222 VERISHHENQVQVHSEHA-QLAVDALLIASGRQPATA 257 (441)
T ss_pred EEEEEECCCEEEEEECCC-EEEEEEEEEECCCCCCCC
T ss_conf 999995399899997686-786648999447665544
No 207
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ; InterPro: IPR012831 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobZ, which is essential for cobalamin biosynthesis and is complemented by precorrin 3B synthase CobG (1.3.99.1 from EC). The enzyme has been shown to contain flavin, haem and Fe-S cluster cofactors, and is believed to require dioxygen as a substrate. In Rhodobacter capsulatus, CobZ is found as a N-terminal domain, whereas in other species it exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (IPR012830 from INTERPRO)..
Probab=98.91 E-value=4e-09 Score=71.87 Aligned_cols=115 Identities=29% Similarity=0.450 Sum_probs=77.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEC---CCCCCEEEE------ECCCC------CCCC--C-------------
Q ss_conf 5199998977799999999986995999967---887756875------01007------8774--7-------------
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAG---SDLGGQLMI------TESIE------NYPG--F------------- 55 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~---~~~GG~l~~------~~~i~------n~~g--~------------- 55 (321)
.||+|||||-|||.||+.++|.|..|+|+|. ...||.--+ +++++ .||. |
T Consensus 2 V~VLvIGgG~AgLCAAi~ArraGAsVllLeaAPr~~rGGNarHgRN~R~~hd~p~d~~~D~YpaEEf~~dL~~vtgg~t~ 81 (467)
T TIGR02485 2 VDVLVIGGGLAGLCAAIEARRAGASVLLLEAAPRDLRGGNARHGRNLRVAHDIPLDFLRDAYPAEEFRRDLLKVTGGRTD 81 (467)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 23788764258899999986379679840247853257865333451110157888645787378999875431278741
Q ss_pred -------------------------CC------CC---------CHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCC-CC
Q ss_conf -------------------------77------78---------97899986643232002322211-332011222-22
Q gi|254780283|r 56 -------------------------AT------SI---------RGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDR-HP 93 (321)
Q Consensus 56 -------------------------~~------~~---------~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~-~~ 93 (321)
.+ +. =|..|++.+...++++||+|.++ .|..|..+. +.
T Consensus 82 ~~l~~L~i~r~s~~~~w~~~~GVhl~P~~aG~lpysRrtaF~~GGGkAl~NAly~sAerLGv~Iry~~~V~ri~~~~~g~ 161 (467)
T TIGR02485 82 ERLARLLIERASSILRWLIAHGVHLQPAAAGVLPYSRRTAFLLGGGKALVNALYASAERLGVEIRYDAEVERIEREEDGR 161 (467)
T ss_pred HHHHHHHHHHCCHHHHHHHHCCCEECCCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCC
T ss_conf 15789988720023689996794336632565760111112357618999999998855572541477300026456786
Q ss_pred CC--CC--CCCCCCCCCCEECCCCCC---CCEEE
Q ss_conf 22--22--222222210000147766---42024
Q gi|254780283|r 94 FL--VE--TQSGDLWHADAVVIATGS---EVKWL 120 (321)
Q Consensus 94 ~~--v~--~~~g~~~~a~~lIiAtG~---~~~~~ 120 (321)
.. +. +..++.++++.+|+|+|. .+.|+
T Consensus 162 ~~i~~~~v~~~~~rI~t~a~VlaaGG~ganr~WL 195 (467)
T TIGR02485 162 AFIAARLVAAADERIATKAVVLAAGGLGANREWL 195 (467)
T ss_pred CCCCCEEEECCCCCEEEEEEEEEECCCCCCHHHH
T ss_conf 2012146622688122468888617888897999
No 208
>TIGR02032 GG-red-SF geranylgeranyl reductase family; InterPro: IPR011777 This entry includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates..
Probab=98.91 E-value=1.4e-09 Score=74.57 Aligned_cols=112 Identities=22% Similarity=0.318 Sum_probs=68.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC--------CEEEEE--------C----CCCCCCCCC---------
Q ss_conf 51999989777999999999869959999678877--------568750--------1----007877477---------
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG--------GQLMIT--------E----SIENYPGFA--------- 56 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~G--------G~l~~~--------~----~i~n~~g~~--------- 56 (321)
||||||||||||-+||++|++.|++|+|+|+++.. |-+... . .+.|||.-.
T Consensus 1 yDVvvvGaGPaG~~aA~~~A~~G~~Vllle~~~~~r~P~k~CGg~~~~~~~~~~~~~~~d~~~L~~~P~~~~~~~~~~~~ 80 (343)
T TIGR02032 1 YDVVVVGAGPAGSSAAYRLAKKGLRVLLLEKKSFPRYPGKPCGGALSPRVLEELVLPGPDEYALKDIPKELIVNEVRTLF 80 (343)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHEE
T ss_conf 93899827746899999999569738898504507988600577667001311367888861301477434542001100
Q ss_pred -C-----------CC--------------CHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCC-CCCCCCCC---CCCCCC
Q ss_conf -7-----------78--------------97899986643232002322211-332011222-22222222---222221
Q gi|254780283|r 57 -T-----------SI--------------RGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDR-HPFLVETQ---SGDLWH 105 (321)
Q Consensus 57 -~-----------~~--------------~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~-~~~~v~~~---~g~~~~ 105 (321)
. .+ +..+|=+.+.+++++-|.+++.+ +++.+...+ ....+.++ ...++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~R~~fD~~L~~~A~~~G~~~~~~~~~~~~~~~~~~~~~~~~~dd~~~~~~~ 160 (343)
T TIGR02032 81 NGARIISPNGDKVEIPIEELAFTEEAYVIDRDAFDEFLAERAQEAGAELRLGTTVLDVEIEDKVVVEVRGGDDESKGEVT 160 (343)
T ss_pred CCCEEEECCCCEEEECCHHHCCCCEEEEEECHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCEEEEEECCCCCCCCEEE
T ss_conf 14338807863221022211247437898526741899999975780675263761127618368997268675660462
Q ss_pred CCEECCCCCCCC
Q ss_conf 000014776642
Q gi|254780283|r 106 ADAVVIATGSEV 117 (321)
Q Consensus 106 a~~lIiAtG~~~ 117 (321)
+|.||.|.|+.-
T Consensus 161 a~~vigADG~~S 172 (343)
T TIGR02032 161 AKIVIGADGARS 172 (343)
T ss_pred CCEEEECCCCCC
T ss_conf 558997168878
No 209
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.90 E-value=2.9e-09 Score=72.67 Aligned_cols=41 Identities=34% Similarity=0.485 Sum_probs=35.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCC-CCEEE
Q ss_conf 675199998977799999999986995999967887-75687
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL-GGQLM 44 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~-GG~l~ 44 (321)
..|||+|||||++||+||.+|+|+|++|+|+|+++. ||...
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEE
T ss_conf 976299989887899999999968997999963788877246
No 210
>PRK06370 mercuric reductase; Validated
Probab=98.90 E-value=8.5e-09 Score=69.95 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=76.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-E
Q ss_conf 751999989777999999999869959999678877568750100787747777897899986643232002322211-3
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-L 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~ 83 (321)
-.+++|||||+.|+..|..+.+.|.+|+|+++.+. ++ |.+. +++.+.+.+++++.|++++.+ +
T Consensus 170 P~~v~ViGgG~ig~E~A~~~~~~G~~Vtlv~~~~~---ll--------~~~d-----~~~~~~~~~~l~~~gi~i~~~~~ 233 (459)
T PRK06370 170 PEHLAVIGGGYIGLEFAQAFRRFGSEVTVVERGPR---LL--------PRED-----EDVAEAVREILEREGIDVRLDAK 233 (459)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCEEEEEEECCC---CC--------CCCC-----HHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 95499989847799999999963988999996573---45--------5547-----56789999999852986202757
Q ss_pred EEECCCCCCCCCCCCC---CCCCCCCCEECCCCCCCCEEE
Q ss_conf 3201122222222222---222221000014776642024
Q gi|254780283|r 84 VVSVDLDRHPFLVETQ---SGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 84 V~~i~~~~~~~~v~~~---~g~~~~a~~lIiAtG~~~~~~ 120 (321)
|..+..+++...+... ++.++++|.+++|+|-.|+..
T Consensus 234 v~~i~~~~~~~~v~~~~~~~~~~i~~d~vl~a~Gr~Pnt~ 273 (459)
T PRK06370 234 CLRVARDGDGIAVGLDCAGGAPEIAGSHILVAVGRVPNTD 273 (459)
T ss_pred EEEEEEECCEEEEEEEECCCEEEEEEEEEEEEECCCCCCC
T ss_conf 8999982998999999799738999758999614314655
No 211
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.89 E-value=1.1e-08 Score=69.38 Aligned_cols=101 Identities=21% Similarity=0.265 Sum_probs=76.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 6751999989777999999999869959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
.-.+++|||||+-|+..|..+++.|.+|+|+++.+. ++ |.+ .+++.+.+.+.+++.+++++.+
T Consensus 169 lP~~l~IiGgG~ig~E~A~~~~~~G~~Vtiv~~~~~---il--------~~~-----d~~~~~~l~~~l~~~Gi~i~~~~ 232 (458)
T PRK06912 169 IPKSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQ---LL--------PGE-----DEDIAHILREKLEEDGVEIFTGA 232 (458)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC--------CHH-----HHHHHHHHHHHHHHCCCEEECCC
T ss_conf 796599989974799999999965987999984466---78--------305-----67899999999986695998288
Q ss_pred EEEECCCCCCCCCCCCCCC-CCCCCCEECCCCCCCCEEE
Q ss_conf 3320112222222222222-2221000014776642024
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSG-DLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g-~~~~a~~lIiAtG~~~~~~ 120 (321)
.+..++.+.+...++.+++ .++++|.|++|+|-.|+..
T Consensus 233 ~v~~i~~~~~~~~~~~~~~~~~~~~d~vl~a~Gr~Pn~~ 271 (458)
T PRK06912 233 ALKGLNNYKKQASFEYEGSIQEVNPDFVLVAVGRKPRVQ 271 (458)
T ss_pred EEEEEECCCCEEEEEECCCEEEEECCEEEEECCCCCCCC
T ss_conf 799998669879999589638996479999048766425
No 212
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.87 E-value=1.5e-08 Score=68.51 Aligned_cols=110 Identities=15% Similarity=0.262 Sum_probs=69.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC-CCEEEEECCC----CCCEEEEECC----------------C--------C------
Q ss_conf 51999989777999999999869-9599996788----7756875010----------------0--------7------
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAM-LKPVIIAGSD----LGGQLMITES----------------I--------E------ 50 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g-~~v~iie~~~----~GG~l~~~~~----------------i--------~------ 50 (321)
.+|+|||||+|||++|+.|.|.+ .+|+|+|+.. .|..+...+. + .
T Consensus 1 mkV~IVGaGiaGL~lA~~L~r~g~i~V~V~Er~~~~~~~GagI~l~pn~~r~L~~lGl~~~~~~~~~~~~~~~~~~~~~~ 80 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFGEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFEW 80 (414)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCEEEEECHHHHHHHHHCCCCHHHHHHHHCCCCCCCEEEEEE
T ss_conf 98999994489999999998539998899942898888832999998999999987991699998622687642057873
Q ss_pred ------CCCCCC-------CCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf ------877477-------778978999866432320023222113320112222222222222222100001477664
Q gi|254780283|r 51 ------NYPGFA-------TSIRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 51 ------n~~g~~-------~~~~~~~l~~~~~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
.+.+.. ..+...+|.+.+.+.+..-.+. ...+++.++.+.+..+|.+++|.++++|-||-|-|.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~~~~~~~~~~-~~~~v~~v~~~~~~v~v~f~dG~~~~aDlVVGADGi~ 158 (414)
T TIGR03219 81 RNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPEGIAS-FGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGIK 158 (414)
T ss_pred CCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHCCCCEEE-ECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCCC
T ss_conf 15776321253235788854284999999998547666779-6989999999589279998799887226899747642
No 213
>KOG2415 consensus
Probab=98.87 E-value=1.1e-08 Score=69.31 Aligned_cols=41 Identities=32% Similarity=0.656 Sum_probs=33.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC------CCCEEEEECC-CCCCEE
Q ss_conf 7675199998977799999999986------9959999678-877568
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARA------MLKPVIIAGS-DLGGQL 43 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~------g~~v~iie~~-~~GG~l 43 (321)
+.++||+|+||||||||||++|.++ .++|+++|+. ++||..
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred HCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCE
T ss_conf 004058998888156788888998887607836899996123147713
No 214
>PRK07233 hypothetical protein; Provisional
Probab=98.85 E-value=5.1e-09 Score=71.25 Aligned_cols=39 Identities=36% Similarity=0.446 Sum_probs=34.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEE
Q ss_conf 1999989777999999999869959999678-87756875
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMI 45 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~ 45 (321)
+|+|||||.|||+||.+|++.|++|+|+|++ .+||++..
T Consensus 1 rVvVIGaG~aGLsaA~~L~~~G~~V~VlEa~~~~GGr~~t 40 (430)
T PRK07233 1 KIAIIGGGIMGLAAAYRLAKAGHEVTVFEADDQLGGLAAS 40 (430)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEE
T ss_conf 9899997789999999998399988999589989599779
No 215
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.85 E-value=1.6e-08 Score=68.40 Aligned_cols=100 Identities=21% Similarity=0.213 Sum_probs=75.1
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-E
Q ss_conf 751999989777999999999869959999678877568750100787747777897899986643232002322211-3
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-L 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~ 83 (321)
-.+++|||||+.|+..|..+.+.|.+|+|+|+.+. ++ |.+ -+++.+.+.+++++.+++++.+ +
T Consensus 172 Pk~v~IiGgG~ig~E~A~~~~~lG~~Vtiv~~~~~---~l--------~~~-----d~~~~~~l~~~l~~~Gi~i~~~~~ 235 (467)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDR---AL--------PNE-----DAEVSKEIEKQYKKLGVKILTGTK 235 (467)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC--------CCC-----CHHHHHHHHHHHHHCCCEEECCCE
T ss_conf 96699999879999999999832987777621131---35--------442-----267899999999866988855976
Q ss_pred EEECCCCCCCCCCCCC-----CCCCCCCCEECCCCCCCCEEE
Q ss_conf 3201122222222222-----222221000014776642024
Q gi|254780283|r 84 VVSVDLDRHPFLVETQ-----SGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 84 V~~i~~~~~~~~v~~~-----~g~~~~a~~lIiAtG~~~~~~ 120 (321)
+..+..+++...+... +.+++++|.|++|+|-.|+.-
T Consensus 236 v~~i~~~~~~~~v~~~~~~~g~~~~i~~d~vlva~Gr~Pn~~ 277 (467)
T PRK07818 236 VESIRDNGDGVEVTVTVSKDGKSEELKADKVLQAIGFAPNVE 277 (467)
T ss_pred EEEEEECCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCC
T ss_conf 899998499399999988899469999525898116750444
No 216
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.85 E-value=1.6e-08 Score=68.35 Aligned_cols=97 Identities=19% Similarity=0.194 Sum_probs=73.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-EE
Q ss_conf 51999989777999999999869959999678877568750100787747777897899986643232002322211-33
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-LV 84 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V 84 (321)
.+++|||||+-|+..|..+++.|.+|+|+|+.+ +++ |.+. +++.+.+.+.. +-++++..+ .+
T Consensus 170 ~~l~IiGgG~Ig~E~A~~~~~lG~~Vtlie~~~---~lL--------~~~D-----~~i~~~l~~~~-~~~~~i~~~~~v 232 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST---KLL--------RHLD-----EDISDRFTEIA-KKKWDIRLGRNV 232 (452)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECC---CCC--------CCCC-----HHHHHHHHHHH-HCCEEEEECCEE
T ss_conf 669998886899999999996199499999676---223--------3348-----89999999997-568299932389
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf 20112222222222222222100001477664202
Q gi|254780283|r 85 VSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 85 ~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
..+..+++.+.+++++++++++|.+++|+|-.|+.
T Consensus 233 ~~~~~~~~~~~v~~~~g~~~~~d~vl~a~GR~Pn~ 267 (452)
T TIGR03452 233 TAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNG 267 (452)
T ss_pred EEEEECCCEEEEEECCCCEEEEEEEEECCCCCCCC
T ss_conf 99997398039994699799822899924876663
No 217
>TIGR02352 thiamin_ThiO glycine oxidase ThiO; InterPro: IPR012727 This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as Escherichia coli that instead use tyrosine and the ThiH protein .; GO: 0016491 oxidoreductase activity, 0050660 FAD binding.
Probab=98.85 E-value=9.5e-09 Score=69.67 Aligned_cols=108 Identities=26% Similarity=0.382 Sum_probs=77.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCC--------EEEEECCCC----------------------------
Q ss_conf 999989777999999999869959999678-8775--------687501007----------------------------
Q gi|254780283|r 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGG--------QLMITESIE---------------------------- 50 (321)
Q Consensus 8 VvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG--------~l~~~~~i~---------------------------- 50 (321)
|+|||||-.||+-|++|++.|++|+|+|++ +.|+ +|.+..+.+
T Consensus 1 ~~ViGGGvIGL~~A~~L~~~G~~V~l~~~~~~~g~~AS~~AaGMLAP~aE~~~~~~~~f~L~~~S~~~yp~~~~~l~~~t 80 (357)
T TIGR02352 1 VLVIGGGVIGLSVAVELAERGHSVTLLDRDPTVGGGASWAAAGMLAPVAEVEYAEDPLFDLALESLRLYPEWLEALKELT 80 (357)
T ss_pred CEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 97845318789999999974993899965860456778866433243266746767478999999997599999987317
Q ss_pred C------------------------------------------------CCC----------C--CCCCCHHHHHHHHHH
Q ss_conf 8------------------------------------------------774----------7--777897899986643
Q gi|254780283|r 51 N------------------------------------------------YPG----------F--ATSIRGDWLMEQMRQ 70 (321)
Q Consensus 51 n------------------------------------------------~~g----------~--~~~~~~~~l~~~~~~ 70 (321)
+ -|. + ...+..++|++.+.+
T Consensus 81 g~~~~y~~~G~l~vA~~~~d~~~l~~~~~~~~~~G~~~~~l~~~~~r~~EP~L~~~~~~a~~~p~d~~v~~r~l~~AL~~ 160 (357)
T TIGR02352 81 GLDTGYRQCGTLVVAFDEDDVEKLRQLADLQSATGMELEWLSGRALRRLEPYLSPGIRGAVYYPDDAHVDPRELLKALVK 160 (357)
T ss_pred CCCCEEECCCEEEEECCCCHHHHHHHHHHHHHHHCCEEEECCHHHHHHHCCCCCCCCCEEEECCCCCCCCCHHHHHHHHH
T ss_conf 99512740525894078711688899999987528604650779999844252422033457486523371899999999
Q ss_pred HHHHCCCCCCCE-EEEECCCCCC-CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 232002322211-3320112222-222222222222100001477664
Q gi|254780283|r 71 QAENFGTKIIQD-LVVSVDLDRH-PFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 71 ~~~~~~v~~~~~-~V~~i~~~~~-~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
.++++|+++... .|..+....+ ...|.++++ .+.+|++|+|+|+.
T Consensus 161 ~~~~lGv~i~~~~~v~~~~~~~~~~~~~~~~~~-~~~ad~vV~A~G~w 207 (357)
T TIGR02352 161 ALEKLGVEIIEEVEVQEIEARGEKVTAVVTSSG-DVQADQVVLAAGAW 207 (357)
T ss_pred HHHHCCCEEEECCCEEEEECCCCEEEEECCCCC-CEECCEEEEECCCC
T ss_conf 998569479862533564326766988528854-26557479935733
No 218
>PRK09897 hypothetical protein; Provisional
Probab=98.85 E-value=3.6e-09 Score=72.16 Aligned_cols=155 Identities=20% Similarity=0.263 Sum_probs=86.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCC-CC-CEEEEE-----CCCCCCCCC---------------------
Q ss_conf 51999989777999999999869--9599996788-77-568750-----100787747---------------------
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAM--LKPVIIAGSD-LG-GQLMIT-----ESIENYPGF--------------------- 55 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g--~~v~iie~~~-~G-G~l~~~-----~~i~n~~g~--------------------- 55 (321)
++|+|||+||.|++.-..|.+.+ ++++|||+.+ .| |+-|.. ..+-|+.+.
T Consensus 2 krIAivG~GPtgiYt~~~Ll~~~~~~~I~ifE~~~~aG~GMPYs~e~ns~~mlaNIas~EIPpi~~t~~~WL~~q~~~~L 81 (535)
T PRK09897 2 KKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHL 81 (535)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHH
T ss_conf 50799667862499999986469982699982156677899868544558887503105588513569999873888789
Q ss_pred ----------------CCCCCHHHHHHHHH---HHHHHCC--CCCCCE-EEEECCCCCCCCCCCCCCC-CCCCCCEECCC
Q ss_conf ----------------77789789998664---3232002--322211-3320112222222222222-22210000147
Q gi|254780283|r 56 ----------------ATSIRGDWLMEQMR---QQAENFG--TKIIQD-LVVSVDLDRHPFLVETQSG-DLWHADAVVIA 112 (321)
Q Consensus 56 ----------------~~~~~~~~l~~~~~---~~~~~~~--v~~~~~-~V~~i~~~~~~~~v~~~~g-~~~~a~~lIiA 112 (321)
|.-+-|+-|.++|. +++..-| ++++.+ +|+.+..+.+..++.+.++ ....+|.+|||
T Consensus 82 ~~~~id~~~l~~rqflPRiLlGeYl~~QF~~Lve~a~~~G~~i~Vh~~~~VtDi~~~~~gv~l~~~~~~~~~~FD~vVIa 161 (535)
T PRK09897 82 QRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIA 161 (535)
T ss_pred HHCCCCHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEEEEECCCCEEEEECCCCCCCCCEEEEEE
T ss_conf 87199832264101004888889999999999999986596699975766676443699559983378876432079980
Q ss_pred CCCCCEEEEECCCCCCCEEECCCCCC---CCCCCCCCCCEEEEECCCCCCCCEEEEEC
Q ss_conf 76642024652774332021012111---11111122100001025565431012101
Q gi|254780283|r 113 TGSEVKWLRLESEKKFQGFGVSACAT---CDGFFYKNKDVIVVGGGNTAAEEALHLAK 167 (321)
Q Consensus 113 tG~~~~~~~ipG~~~~~~~~v~~~~~---~d~~~~~~k~v~ViGgG~~g~e~A~~L~~ 167 (321)
||-. ||.-+-. .++-+..++ ... ...+-+|.|.|..-+|+|.|+.|++
T Consensus 162 TGH~--WP~~~e~----~~~YF~SPw~~l~~a-~ip~~~VgI~GSSLSAIDAa~ala~ 212 (535)
T PRK09897 162 TGHV--WPDEEEA----TRTYFPSPWSGLMEA-KVDACNVGIMGTSLSGLDAAMAVAI 212 (535)
T ss_pred CCCC--CCCCCCC----CCCCCCCCCCCHHHC-CCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf 7987--9987767----766678999736542-5787527762376578999999998
No 219
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.84 E-value=1.6e-08 Score=68.30 Aligned_cols=101 Identities=13% Similarity=0.144 Sum_probs=74.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-E
Q ss_conf 751999989777999999999869959999678877568750100787747777897899986643232002322211-3
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-L 83 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~ 83 (321)
-++++|||||+.|+..|..+++.|.+|+|+++.+. ++ |.+ .+++.+.+.+++++-+++++.+ +
T Consensus 183 Pk~~~ViGgG~ig~E~A~~~~~lG~~Vtli~~~~~---~l--------~~~-----d~~~~~~~~~~l~~~gi~i~~~~~ 246 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPA---FL--------AAA-----DEQVAKEALKAFTKQGLDIHLGVK 246 (475)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC--------CCC-----CHHHHHHHHHHHHHCCCEEEECCE
T ss_conf 96799996747589999999954985999985364---33--------445-----878899999988736929970889
Q ss_pred EEECCCCCCCCCCCCCC--C--CCCCCCEECCCCCCCCEEEE
Q ss_conf 32011222222222222--2--22210000147766420246
Q gi|254780283|r 84 VVSVDLDRHPFLVETQS--G--DLWHADAVVIATGSEVKWLR 121 (321)
Q Consensus 84 V~~i~~~~~~~~v~~~~--g--~~~~a~~lIiAtG~~~~~~~ 121 (321)
+.++...++...+...+ + .++++|.|++|+|-.|+.-.
T Consensus 247 v~~v~~~~~~~~v~~~~~~g~~~~~~~D~vlva~Gr~Pn~~~ 288 (475)
T PRK06327 247 IGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG 288 (475)
T ss_pred EEEEEECCCEEEEEEECCCCCEEEEEEEEEEEECCCEECCCC
T ss_conf 999995487399999938998799998199993263614545
No 220
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.84 E-value=5.5e-09 Score=71.07 Aligned_cols=107 Identities=26% Similarity=0.354 Sum_probs=67.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCC-------CC-------------------------C
Q ss_conf 19999897779999999998699599996788-775687501007-------87-------------------------7
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIE-------NY-------------------------P 53 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~-------n~-------------------------~ 53 (321)
+|+|||+|+||++||..|+..|.++++|||+. .||++.....-+ +| |
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~W~~ 82 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDVWTP 82 (331)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHEECCCCCCCCCCCEEECCCCHHHHHHHHHHHHCCCEEECCC
T ss_conf 47997563688999999986695799997388755311000057865345550415786579999999986785430351
Q ss_pred C---CCCC---CCHHHH-------HHHHHH-HHHHCCCCCCCE-EEEECCCCCCCCCCCCCCC-CCCCCCEECCCCCC
Q ss_conf 4---7777---897899-------986643-232002322211-3320112222222222222-22210000147766
Q gi|254780283|r 54 G---FATS---IRGDWL-------MEQMRQ-QAENFGTKIIQD-LVVSVDLDRHPFLVETQSG-DLWHADAVVIATGS 115 (321)
Q Consensus 54 g---~~~~---~~~~~l-------~~~~~~-~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g-~~~~a~~lIiAtG~ 115 (321)
+ +... -.+.+. +..+-+ .+. +.+++.+ +|+.+...++.+++.+++| +...+|.|+||.=+
T Consensus 83 ~~~~~~~~~~~~~~d~~pyvg~pgmsalak~LAt--dL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~vvla~PA 158 (331)
T COG3380 83 AVWTFTGDGSPPRGDEDPYVGEPGMSALAKFLAT--DLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDVVLAIPA 158 (331)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHC--CCHHHHHHHHHHHEECCCEEEEEECCCCCCCCCCEEEEECCC
T ss_conf 1101136888998887762367436799998724--504344223143123387168984688764553438993688
No 221
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.82 E-value=6.6e-09 Score=70.60 Aligned_cols=38 Identities=37% Similarity=0.573 Sum_probs=34.6
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEE
Q ss_conf 999989777999999999869959999678-87756875
Q gi|254780283|r 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMI 45 (321)
Q Consensus 8 VvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~ 45 (321)
|+|||||.|||+||.+|++.|++|+|+|+. ++||++..
T Consensus 1 VvVIGaGlaGL~AA~~L~~~G~~V~VlEa~~r~GGR~~t 39 (430)
T TIGR03467 1 VVIIGGGLAGLSAAVELARAGVRVTLFEARPRLGGRARS 39 (430)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEE
T ss_conf 299878689999999998789988999489988167678
No 222
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.82 E-value=2.5e-08 Score=67.22 Aligned_cols=98 Identities=23% Similarity=0.254 Sum_probs=72.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-EE
Q ss_conf 51999989777999999999869959999678877568750100787747777897899986643232002322211-33
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-LV 84 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V 84 (321)
.+|+|||||+.|+..|..+++.|.+|+|+++.+. ++ |.+ .+++.+.+++.+++ +++++.+ +|
T Consensus 170 k~v~VIGgG~ig~E~A~~l~~~G~~Vtvv~~~~~---ll--------~~~-----d~~~~~~~~~~l~~-~i~i~~~~~v 232 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDR---IL--------PLT-----DPEISDQAQKLLSK-EFKIKLGAKV 232 (460)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC--------CCC-----CHHHHHHHHHHHHC-CCEEEECCEE
T ss_conf 5699999867887999999846986999962475---43--------214-----99999999999860-9889928779
Q ss_pred EECCCCCCCCCCCCCCC---CCCCCCEECCCCCCCCEEE
Q ss_conf 20112222222222222---2221000014776642024
Q gi|254780283|r 85 VSVDLDRHPFLVETQSG---DLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 85 ~~i~~~~~~~~v~~~~g---~~~~a~~lIiAtG~~~~~~ 120 (321)
..+..+++.+.+...++ .++++|.|++|+|-.|+..
T Consensus 233 ~~i~~~~~~~~v~~~~~~~~~~i~~D~vl~aiG~~Pn~~ 271 (460)
T PRK06292 233 TSVERKGDKVEVEYEKGGKTETIEADYVLVATGRRPNTD 271 (460)
T ss_pred EEEEECCCEEEEEEECCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 999975997999995499628999528999137513555
No 223
>pfam04820 Trp_halogenase Tryptophan halogenase. Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent.
Probab=98.80 E-value=3.1e-08 Score=66.69 Aligned_cols=114 Identities=27% Similarity=0.395 Sum_probs=77.4
Q ss_pred EEEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCC--C--EEE----------------------------------E
Q ss_conf 199998977799999999986---9959999678877--5--687----------------------------------5
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARA---MLKPVIIAGSDLG--G--QLM----------------------------------I 45 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~---g~~v~iie~~~~G--G--~l~----------------------------------~ 45 (321)
||+|||||.||.-+|..|++. ..+++|||+++.+ | .-+ |
T Consensus 1 KIvIvGGGTAGWmtA~~L~~~~~~~~~ItlIES~~i~~iGVGE~T~p~~~~~l~~lGI~e~~fm~~~~AT~K~Gi~F~nW 80 (457)
T pfam04820 1 KIVIVGGGTAGWMAAAALARALKGGLDVTLVESEEIGTVGVGEATIPSIRTFNRMLGIDEAEFMRATQATFKLGIRFEDW 80 (457)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCCEEECCEEECCC
T ss_conf 98998987999999999998659998799996799998784576379999999983999899999739887783783186
Q ss_pred E----CCCCCCC--C--------------------------------------C-C---------------CCCCHHHHH
Q ss_conf 0----1007877--4--------------------------------------7-7---------------778978999
Q gi|254780283|r 46 T----ESIENYP--G--------------------------------------F-A---------------TSIRGDWLM 65 (321)
Q Consensus 46 ~----~~i~n~~--g--------------------------------------~-~---------------~~~~~~~l~ 65 (321)
. ...|.|. + + | -..+...+.
T Consensus 81 ~~~~~~y~hpF~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~k~~p~~~~~~~~~~~~~yayHfDA~k~~ 160 (457)
T pfam04820 81 GRRGERYIHPFGVTGHPIDGVPFHHYWLRLRARGFAGPLDDYCLPAVAALAGKFSPPPKDPRSGLSGLSYAYHFDAALYA 160 (457)
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECHHHHH
T ss_conf 88998248357677877566752799998652477898788769999998469998877766656676646872799999
Q ss_pred HHHHHHHHHCCCCCCCEEEEECCCCCCC--CCCCCCCCCCCCCCEECCCCCCCCEEE
Q ss_conf 8664323200232221133201122222--222222222221000014776642024
Q gi|254780283|r 66 EQMRQQAENFGTKIIQDLVVSVDLDRHP--FLVETQSGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 66 ~~~~~~~~~~~v~~~~~~V~~i~~~~~~--~~v~~~~g~~~~a~~lIiAtG~~~~~~ 120 (321)
+.+++.+...||+.+.++|+.+..+.+. -.|.+++|+++.+|-.|=|||.....+
T Consensus 161 ~~Lr~~a~~~GV~~i~~~V~~v~~~~~G~I~sl~l~~G~~i~aDlfIDCTGF~~lLi 217 (457)
T pfam04820 161 RFLRRNAEARGVTRVEGKVVDVQLDADGFVTSLRLEDGREVEADLFIDCSGFRGLLI 217 (457)
T ss_pred HHHHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEECCCCCCCCC
T ss_conf 999998885798899847879998899967899967898887648997787411000
No 224
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.78 E-value=3.7e-08 Score=66.19 Aligned_cols=113 Identities=21% Similarity=0.254 Sum_probs=77.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEE---EECCCC----------------------------
Q ss_conf 6751999989777999999999869--9599996788775687---501007----------------------------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAM--LKPVIIAGSDLGGQLM---ITESIE---------------------------- 50 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g--~~v~iie~~~~GG~l~---~~~~i~---------------------------- 50 (321)
.+|||+|||||--|+++|++|.++. ++++|+||...-|+-. ++.-+|
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~~~~~~~kq 81 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNINEFAICKQ 81 (429)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 83229998973898999999997388965999970576533345676534425544898551339999999999999998
Q ss_pred --------------------------------CC----------------CCCCCC------------CCHHHHHHHHHH
Q ss_conf --------------------------------87----------------747777------------897899986643
Q gi|254780283|r 51 --------------------------------NY----------------PGFATS------------IRGDWLMEQMRQ 70 (321)
Q Consensus 51 --------------------------------n~----------------~g~~~~------------~~~~~l~~~~~~ 70 (321)
|. |...+. +...++...+.+
T Consensus 82 ~~~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~~~aal~~p~~giV~~~~~t~~l~e 161 (429)
T COG0579 82 LGIPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEGAVAALLVPSGGIVDPGELTRALAE 161 (429)
T ss_pred HCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHCCCCCEEECCHHHHHHHCCCCCCCCEEEEECCCCCEECHHHHHHHHHH
T ss_conf 49861236808999782778999999998865798614426999998629654436514687577750768999999999
Q ss_pred HHHHCCCCCCCE-EEEECCCCCC-CCCCCCCCCCC-CCCCEECCCCCCC
Q ss_conf 232002322211-3320112222-22222222222-2100001477664
Q gi|254780283|r 71 QAENFGTKIIQD-LVVSVDLDRH-PFLVETQSGDL-WHADAVVIATGSE 116 (321)
Q Consensus 71 ~~~~~~v~~~~~-~V~~i~~~~~-~~~v~~~~g~~-~~a~~lIiAtG~~ 116 (321)
++...|+++..+ +|+.+....+ .+.+.+.+|++ ++++.||.|.|..
T Consensus 162 ~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~ 210 (429)
T COG0579 162 EAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLY 210 (429)
T ss_pred HHHHCCCEEEECCEEEEEEEECCCEEEEEECCCCEEEEEEEEEECCCHH
T ss_conf 9997697899348364789927965999834796789956899897451
No 225
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit; InterPro: IPR006005 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form of the NADPH-dependent or NADH-dependent glutamate synthase (1.4.1.13 from EC and 1.4.1.14 from EC respectively) small subunit. There is no corresponding large subunit. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.77 E-value=1.2e-09 Score=74.86 Aligned_cols=104 Identities=21% Similarity=0.360 Sum_probs=70.2
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC-----------CCCCC-CCC-C--CCCCCCCCCCCCCCEEEC
Q ss_conf 12210000102556543101210133322234434332-----------21111-211-2--235544332222311211
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL-----------RSEKI-LQE-K--LFLQSNIDFLFDTEVVDV 208 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l-----------~~~~~-~~~-~--~~~~~~i~~~~~~~v~~i 208 (321)
..||+|+|||+|+.|+=+|..|+|-|-.||+++|.|+. +-+|. .++ | +++.+||+|.+|+.|-.
T Consensus 149 rTGkkVAVVGSGPAGLAaA~qLnrAGH~VTVfER~DR~GGLL~YGIPnmKLdK~e~v~RRi~~l~aEG~~FvtnteiGd- 227 (517)
T TIGR01317 149 RTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRVGGLLRYGIPNMKLDKEEIVDRRIDLLEAEGVDFVTNTEIGD- 227 (517)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCC-
T ss_conf 4786689975675799999998535883899743678886302488874337388999999998747842017830046-
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 48643334444433314203210000011222211123223565677
Q gi|254780283|r 209 IGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF 255 (321)
Q Consensus 209 ~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~ 255 (321)
-.. ..+++.+..++... ++-.-..|.|++|+|.+-..||.
T Consensus 228 ---Wde---nskitnlsk~di~~-~~L~~~fDAVVLa~Ga~~pRDLp 267 (517)
T TIGR01317 228 ---WDE---NSKITNLSKKDISA-DELKEDFDAVVLATGATKPRDLP 267 (517)
T ss_pred ---CCC---CCCEECCCCCCCCH-HHHHHHCCEEEEECCCCCCCCCC
T ss_conf ---534---44200022342687-99871469389833788601035
No 226
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.76 E-value=6.3e-08 Score=64.87 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=36.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 8767519999897779999999998699599996788775
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG 41 (321)
.+++|||+|||||.-|..+|..|+.+|++|+|+|+++++.
T Consensus 3 ~~e~~DvlVIGGGitGagvA~daA~RGl~v~LvE~~Dfas 42 (503)
T PRK12266 3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEADDLAS 42 (503)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 6774798999977889999999986799699993687568
No 227
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.75 E-value=2.1e-08 Score=67.62 Aligned_cols=40 Identities=30% Similarity=0.481 Sum_probs=35.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCEEEEECC-CCCCEEEE
Q ss_conf 51999989777999999999869--959999678-87756875
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAM--LKPVIIAGS-DLGGQLMI 45 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g--~~v~iie~~-~~GG~l~~ 45 (321)
++|+|||||.|||+||++|++.| ++|+|+|++ ++||++..
T Consensus 1 K~V~VIGaGiaGLsaA~~L~~~G~~~~VtvlEa~~r~GG~i~t 43 (452)
T PRK11883 1 KRVAIIGGGISGLTAAYRLHKKGPDADITLLEASDRLGGKIQT 43 (452)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCCCEEEEECCCCCEEEEEE
T ss_conf 9599999878999999999964979978999889988103889
No 228
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.75 E-value=6.9e-08 Score=64.66 Aligned_cols=32 Identities=28% Similarity=0.432 Sum_probs=30.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 51999989777999999999869959999678
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
.||+||||||+|+.+|..|++.|++|+|+|+.
T Consensus 2 ~DV~IvGaG~vGl~lAl~La~~g~~v~lie~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 62999996699999999998579969999789
No 229
>PRK12839 hypothetical protein; Provisional
Probab=98.74 E-value=1.8e-08 Score=68.00 Aligned_cols=39 Identities=31% Similarity=0.563 Sum_probs=35.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 767519999897779999999998699599996788-775
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
.++|||||||+|.|||+||++++..|.+|+|+||.. +||
T Consensus 7 ~~e~DVvVVGsG~AGl~AAi~Aa~~Ga~VivlEK~~~~GG 46 (574)
T PRK12839 7 KHQYDVIVVGSGAGGLSAAVSAAYGGKKVAVVEKASVCGG 46 (574)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 7715789989689999999999988992899968999984
No 230
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; InterPro: IPR010971 This entry represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway . A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions . In Escherichia coli, three enzyme activities have been described: UbiB (which acts first at position 6, see IPR010232 from INTERPRO), UbiH (which acts at position 4, ) and UbiF (which acts at position 5, ). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB) . Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homologue in this subfamily (COQ6, ) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF.; GO: 0016709 oxidoreductase activity acting on paired donors with incorporation or reduction of molecular oxygen NADH or NADPH as one donor and incorporation of one atom of oxygen, 0050660 FAD binding, 0006744 ubiquinone biosynthetic process.
Probab=98.71 E-value=8.5e-08 Score=64.12 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=77.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCCCC----E--------E-------------------------E
Q ss_conf 1999989777999999999869-----9599996788775----6--------8-------------------------7
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAM-----LKPVIIAGSDLGG----Q--------L-------------------------M 44 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g-----~~v~iie~~~~GG----~--------l-------------------------~ 44 (321)
||+||||||+|+++|..|++.+ ++++|||.....- . . .
T Consensus 1 Di~IvGgG~VG~~lA~aL~~~~~~~~~L~~~l~e~~~~~~~~~~~~~~~~D~R~~Al~~~S~~~L~~lG~W~~~~~~~~~ 80 (445)
T TIGR01988 1 DIVIVGGGMVGLALALALASSGSRLKGLKVALIEAQPAEAPSFFAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQ 80 (445)
T ss_pred CEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHCCCCHHHHHHHCC
T ss_conf 96888473889999999841863124731799605211442211258765522010107999999867964452012126
Q ss_pred EECCCC--C--CCC-----CCCC----------------CCHHHHHHHHHHHHHHCC---CCCCCE-EEEECCCC-----
Q ss_conf 501007--8--774-----7777----------------897899986643232002---322211-33201122-----
Q gi|254780283|r 45 ITESIE--N--YPG-----FATS----------------IRGDWLMEQMRQQAENFG---TKIIQD-LVVSVDLD----- 90 (321)
Q Consensus 45 ~~~~i~--n--~~g-----~~~~----------------~~~~~l~~~~~~~~~~~~---v~~~~~-~V~~i~~~----- 90 (321)
+...++ | -+| +... +....+.+.+.+.+.... ++++.. .+..+..+
T Consensus 81 p~~~~~V~D~~~~g~~~~P~~~~F~~~~~~~~~~~LG~~ven~~~~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (445)
T TIGR01988 81 PIRDIHVSDGGSFGRAPHPAALHFDADEVGGPAEALGYVVENRVLQQALWEALQELPNEKVTLLCPARVEELPRHSSKND 160 (445)
T ss_pred CCCEEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCCEEECHHHHHHHHHHHHHHCCCCEEEEECCCEEEEEECCCCCCC
T ss_conf 32048887267888888863687443441788011236711889999999999966896477516721477403677568
Q ss_pred CCCCCCCCCCCCC---CCCCEECCCCCCCC---EEEEEC
Q ss_conf 2222222222222---21000014776642---024652
Q gi|254780283|r 91 RHPFLVETQSGDL---WHADAVVIATGSEV---KWLRLE 123 (321)
Q Consensus 91 ~~~~~v~~~~g~~---~~a~~lIiAtG~~~---~~~~ip 123 (321)
.+..+|++++|++ ++++-||-|=|.+. +..+|+
T Consensus 161 ~~~v~~~L~~G~~~~~l~a~LlvgADG~~S~vR~~~gI~ 199 (445)
T TIGR01988 161 SDEVELTLSDGRQKLLLRARLLVGADGANSKVRQLAGIP 199 (445)
T ss_pred CCCEEEEECCCCEEEEEEECEEEEECCCCHHHHHHHCCC
T ss_conf 860799970894767898532787358652579971888
No 231
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.70 E-value=1.1e-07 Score=63.38 Aligned_cols=33 Identities=27% Similarity=0.467 Sum_probs=30.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 751999989777999999999869959999678
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
+++|+||||||+||..|..|++.|.+++|+|+.
T Consensus 2 rt~V~IVGaGP~GL~LA~lLar~GI~~vVlEr~ 34 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERR 34 (392)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 988999997799999999999779988999768
No 232
>TIGR00137 gid gid protein; InterPro: IPR004417 The gid proteins are present in relatively few bacteria but very tightly conserved where they occur. The function of these proteins is unknown. They are closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae..
Probab=98.70 E-value=4.6e-08 Score=65.67 Aligned_cols=89 Identities=25% Similarity=0.389 Sum_probs=62.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCEEEEECCCCC----------------------------------
Q ss_conf 19999897779999999998699599996-7887756875010078----------------------------------
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIA-GSDLGGQLMITESIEN---------------------------------- 51 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie-~~~~GG~l~~~~~i~n---------------------------------- 51 (321)
.|.|||||-||-.||+++++.|++|+|+| |.. ++++.++-.|
T Consensus 2 ~v~VIGgGLAGsEAAWqlA~~G~~ViLyEMRP~---k~tPAH~t~~lAELVCSNslg~~~l~~aaGlLk~Emr~L~SliI 78 (444)
T TIGR00137 2 KVIVIGGGLAGSEAAWQLAKEGVRVILYEMRPK---KLTPAHHTEDLAELVCSNSLGAKELARAAGLLKEEMRKLDSLII 78 (444)
T ss_pred EEEEECCCCHHHHHHHHHHHCCCCEEEEECCCC---CCCCCCCCCCCEEEEECCHHCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 368971885346899999848972799753876---57787666660223202101101012012368999886307999
Q ss_pred -------CC-CCCCCCCHHHHHHHHHHHH-HHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCC
Q ss_conf -------77-4777789789998664323-200232221133201122222222222222221000014776
Q gi|254780283|r 52 -------YP-GFATSIRGDWLMEQMRQQA-ENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATG 114 (321)
Q Consensus 52 -------~~-g~~~~~~~~~l~~~~~~~~-~~~~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG 114 (321)
+| |-...++...|..++.++. .|-+|++++++|+.|-.++ -+|||||
T Consensus 79 ~aAd~~~VPAGGALaVDR~iFs~s~Te~v~sHPnv~lireEV~EIPe~~----------------~tviaTG 134 (444)
T TIGR00137 79 EAADEAAVPAGGALAVDRKIFSESVTEKVKSHPNVTLIREEVTEIPEEE----------------VTVIATG 134 (444)
T ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEEEECCCC----------------EEEEECC
T ss_conf 8765336898852011278999988776412884588716400515997----------------0798638
No 233
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.70 E-value=3.4e-08 Score=66.46 Aligned_cols=95 Identities=27% Similarity=0.407 Sum_probs=71.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC-------------CCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 51999989777999999999869-------------95999967887756875010078774777789789998664323
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAM-------------LKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQA 72 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g-------------~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~ 72 (321)
-.|+|+||||.|...|-+++..- .+++|+|+... ++ |.|+ +++.++.++.+
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~---IL--------p~~~-----~~l~~~a~~~L 219 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPR---IL--------PMFP-----PKLSKYAERAL 219 (405)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCH---HC--------CCCC-----HHHHHHHHHHH
T ss_conf 18999898823899999999999987653347865318999825712---13--------5888-----89999999999
Q ss_pred HHCCCCCCCE-EEEECCCCCCCCCCCCCCCC-CCCCCEECCCCCCCCEEE
Q ss_conf 2002322211-33201122222222222222-221000014776642024
Q gi|254780283|r 73 ENFGTKIIQD-LVVSVDLDRHPFLVETQSGD-LWHADAVVIATGSEVKWL 120 (321)
Q Consensus 73 ~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~-~~~a~~lIiAtG~~~~~~ 120 (321)
++.|++++.+ .|++++.+. |.+++++ ++.++.+|+|+|.+++.+
T Consensus 220 ~~~GV~v~l~~~Vt~v~~~~----v~~~~g~~~I~~~tvvWaaGv~a~~~ 265 (405)
T COG1252 220 EKLGVEVLLGTPVTEVTPDG----VTLKDGEEEIPADTVVWAAGVRASPL 265 (405)
T ss_pred HHCCCEEECCCCEEEECCCC----EEECCCCEEEECCEEEECCCCCCCHH
T ss_conf 98797898698148976991----79755883776277998577757866
No 234
>KOG2820 consensus
Probab=98.69 E-value=4e-08 Score=66.06 Aligned_cols=113 Identities=19% Similarity=0.347 Sum_probs=75.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCE-----------------------------------------
Q ss_conf 675199998977799999999986995999967887756-----------------------------------------
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQ----------------------------------------- 42 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~----------------------------------------- 42 (321)
...+|+|||||-=|+++|++|++.|.+++++|+-.++..
T Consensus 6 ~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~~ 85 (399)
T KOG2820 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGVK 85 (399)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHCHHHHCEE
T ss_conf 65169998664000088999986577079873367776567656744021202336899999999999987484643336
Q ss_pred ------EEEECCC----------------------------CCCCC---CCCC-----------CCHHHHHHHHHHHHHH
Q ss_conf ------8750100----------------------------78774---7777-----------8978999866432320
Q gi|254780283|r 43 ------LMITESI----------------------------ENYPG---FATS-----------IRGDWLMEQMRQQAEN 74 (321)
Q Consensus 43 ------l~~~~~i----------------------------~n~~g---~~~~-----------~~~~~l~~~~~~~~~~ 74 (321)
+++.... ..||+ ++.+ +-..+-+..++..+.+
T Consensus 86 ~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~~ 165 (399)
T KOG2820 86 LHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKARE 165 (399)
T ss_pred ECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCCCCCCEEEHHHHHHHHHHHHHH
T ss_conf 41562036507678777899999876500355530279899758777657864122034556574188999999999987
Q ss_pred CCCCCCCEE-EEECC---CCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 023222113-32011---2222222222222222100001477664
Q gi|254780283|r 75 FGTKIIQDL-VVSVD---LDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 75 ~~v~~~~~~-V~~i~---~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
+|+.++-++ |..+. .++....|.|.+|..|.+|++|+++|+.
T Consensus 166 ~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW 211 (399)
T KOG2820 166 LGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW 211 (399)
T ss_pred CCEEEECCCCEEEEEECCCCCCEEEEEECCCCEEECCEEEEEECHH
T ss_conf 0859962750456750467785258996668743312489983087
No 235
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.68 E-value=5e-07 Score=59.63 Aligned_cols=68 Identities=22% Similarity=0.262 Sum_probs=44.9
Q ss_pred CCCCHHHHHCCCCEECCCCEEEEC-CCCCCCCCCEEEECCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 235656774256180699799008-88554789828970126884--------456789999799999999999974
Q gi|254780283|r 248 YKPNTKIFRHQLKMTNTNYIWTMP-DSTATSIPGIFAAGDVADER--------YRQAITAAAMGCMAALEVEHYLSI 315 (321)
Q Consensus 248 ~~pn~~~~~~~~~~~~~g~i~~~~-~~~~Ts~p~Iya~GDv~~~~--------~~~~~~A~~~G~~Aa~~i~~yl~~ 315 (321)
..|...+...++..+.+|..+..| +.+.|++||+||+|+|++.+ .+.+..++-.|.+|+.++.+++..
T Consensus 331 v~P~~Hy~mGGi~id~~g~~i~~d~~~~~t~I~GLyAaGE~a~~GvHGANRLggNsLle~~VfGr~Ag~~aa~~~~~ 407 (570)
T PRK05675 331 VVPTCHYMMGGVATNIHGQAITQDANGNDQIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLEKALRE 407 (570)
T ss_pred EECCCCCCCCCEEECCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 51443830488763677625303667777321533541142346766566642167788898699999999987633
No 236
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.65 E-value=4.2e-08 Score=65.91 Aligned_cols=38 Identities=34% Similarity=0.594 Sum_probs=34.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC---CCCE
Q ss_conf 7519999897779999999998699599996788---7756
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD---LGGQ 42 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~---~GG~ 42 (321)
++||+|||+|.|||+||+++++.|.+|+|+||+. .||.
T Consensus 2 e~DVvVVGsG~AGLsAAi~Aae~GakVivlEKe~~~~~GG~ 42 (549)
T PRK12834 2 DADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 42 (549)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCH
T ss_conf 99989989678999999999987992799966888898846
No 237
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit; InterPro: IPR005884 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumaratereductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein . The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species . The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. ; GO: 0016491 oxidoreductase activity, 0006118 electron transport, 0009061 anaerobic respiration.
Probab=98.65 E-value=9.5e-07 Score=57.99 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=40.8
Q ss_pred CCCEEEECCCCCCCCCCEEEECCCCCCCH----HH----HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99799008885547898289701268844----56----7899997999999999999742204
Q gi|254780283|r 264 TNYIWTMPDSTATSIPGIFAAGDVADERY----RQ----AITAAAMGCMAALEVEHYLSIHQSS 319 (321)
Q Consensus 264 ~g~i~~~~~~~~Ts~p~Iya~GDv~~~~~----~~----~~~A~~~G~~Aa~~i~~yl~~~~~~ 319 (321)
-|.|. .|..++|.+||+||+|.|+..+. |+ ...-+=.|+.|+..+.+|=+.|+.+
T Consensus 357 MGGi~-Td~~c~T~~~GLfA~GE~asV~l~GANRLGSNSLaEl~VFG~~AG~~A~~~AA~~~~~ 419 (585)
T TIGR01176 357 MGGIE-TDINCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRLAGEKAAERAARAKKS 419 (585)
T ss_pred ECCEE-ECCCCCCCCCCEEECCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 06544-5787641146334402201331135342430036789998776678999999862367
No 238
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=98.65 E-value=3.4e-08 Score=66.41 Aligned_cols=38 Identities=24% Similarity=0.409 Sum_probs=34.3
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEEE
Q ss_conf 999989777999999999869959999678-87756875
Q gi|254780283|r 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMI 45 (321)
Q Consensus 8 VvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~~ 45 (321)
++|||||.|||++|+.|++.|.+|+|+|+. .+||+-+.
T Consensus 1 a~VIGAG~gGLA~A~rL~~~G~~vtv~E~~d~pGGRA~~ 39 (526)
T TIGR02734 1 AVVIGAGFGGLALAIRLQAAGIRVTVVEKRDKPGGRAGV 39 (526)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEE
T ss_conf 968577768999999997379528998606898750556
No 239
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=98.64 E-value=9.9e-08 Score=63.74 Aligned_cols=80 Identities=21% Similarity=0.390 Sum_probs=59.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-EEE
Q ss_conf 1999989777999999999869959999678877568750100787747777897899986643232002322211-332
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-LVV 85 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~ 85 (321)
+|+|||||+.|+..|..+++.|.+++|+|+.+. ++ |.+ .+++.+.+.+++++.|++++.+ +|.
T Consensus 1 rv~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~---~l--------~~~-----d~~~~~~~~~~l~~~GV~i~~~~~v~ 64 (82)
T pfam00070 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDR---LL--------RGF-----DEEIAKILQEKLEKNGIEVLLNTTVE 64 (82)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC---CC--------HHC-----CHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 999999889999999999863927899812573---30--------227-----98899999999986699997499999
Q ss_pred ECCCCCCCCCCCCCCCC
Q ss_conf 01122222222222222
Q gi|254780283|r 86 SVDLDRHPFLVETQSGD 102 (321)
Q Consensus 86 ~i~~~~~~~~v~~~~g~ 102 (321)
++..+++.+.|.+++|+
T Consensus 65 ~i~~~~~~~~v~~~~gd 81 (82)
T pfam00070 65 EIEGNGDGVLVVLETGD 81 (82)
T ss_pred EEEEECCEEEEEEECCC
T ss_conf 99996999999998899
No 240
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=98.63 E-value=1.7e-07 Score=62.36 Aligned_cols=83 Identities=24% Similarity=0.513 Sum_probs=51.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECC-----CCCCEEEEECCCCC--CC-----------------------C--
Q ss_conf 1999989777999999999869959999678-----87756875010078--77-----------------------4--
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGS-----DLGGQLMITESIEN--YP-----------------------G-- 54 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-----~~GG~l~~~~~i~n--~~-----------------------g-- 54 (321)
+|+||||||||-|||..|++.|.+..|+|++ .+||-+ +...+.. +| |
T Consensus 2 RVAVvGGGPAG~sAAE~LA~aG~~~~L~ER~~~~aKPCGGAI-PLCMv~EF~lP~d~iDRRV~kMk~~SPSN~~~d~gr~ 80 (401)
T TIGR02028 2 RVAVVGGGPAGASAAETLAKAGIQTFLLERKLDNAKPCGGAI-PLCMVDEFDLPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (401)
T ss_pred EEEEECCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCC-CCCCCCHHCCCHHHHHCCCCEEEEECCCCHHHHHHCC
T ss_conf 588974897416899999850310463320567887788864-4120101037866751211022421641013320002
Q ss_pred CC----CCCCHHHHHHH-HHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 77----77897899986-64323200232221133201122
Q gi|254780283|r 55 FA----TSIRGDWLMEQ-MRQQAENFGTKIIQDLVVSVDLD 90 (321)
Q Consensus 55 ~~----~~~~~~~l~~~-~~~~~~~~~v~~~~~~V~~i~~~ 90 (321)
++ -+....|+.+. +++-+.+.|.+++++.|.+++.-
T Consensus 81 L~~~~yIgM~RREVLDsflR~RA~~~GA~li~Glv~~l~~P 121 (401)
T TIGR02028 81 LKEHEYIGMVRREVLDSFLRERAADAGATLINGLVLKLELP 121 (401)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHCCCEEECCEEEEECCC
T ss_conf 78876125145788889999999864881414445763177
No 241
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form; InterPro: IPR006281 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the monomeric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=98.63 E-value=1.4e-07 Score=62.88 Aligned_cols=120 Identities=22% Similarity=0.370 Sum_probs=77.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEC----CCCCC---E-----------------------------------E
Q ss_conf 5199998977799999999986995999967----88775---6-----------------------------------8
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAG----SDLGG---Q-----------------------------------L 43 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~----~~~GG---~-----------------------------------l 43 (321)
+||+|||||.-|++||++|||.+.+++|+|+ +..|. + +
T Consensus 1 fDvIVvGAG~~G~~aaY~LAK~~~~~LLleqFd~pH~rGSsHG~sRiIR~aY~Edr~Y~~m~~e~~~lWa~le~E~g~k~ 80 (401)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKRGKKTLLLEQFDLPHSRGSSHGQSRIIRKAYPEDRFYTSMVSECYQLWAQLEKEAGTKL 80 (401)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEE
T ss_conf 95799817613568999987538617887515677678887877100010267863578899999999999862147264
Q ss_pred E----------------------------------EECCC-CCCCC---CCC-------CCC----HHHHHHHHHHHHHH
Q ss_conf 7----------------------------------50100-78774---777-------789----78999866432320
Q gi|254780283|r 44 M----------------------------------ITESI-ENYPG---FAT-------SIR----GDWLMEQMRQQAEN 74 (321)
Q Consensus 44 ~----------------------------------~~~~i-~n~~g---~~~-------~~~----~~~l~~~~~~~~~~ 74 (321)
. .+..+ ..||| +|+ ... ..+-+..+++.+..
T Consensus 81 h~qT~~l~~G~k~~s~~l~~~~a~~~~~~l~H~~~~s~~l~~rf~G~i~~p~n~~g~~~~~gGvl~~~ka~~a~q~l~~~ 160 (401)
T TIGR01377 81 HRQTGLLLLGPKENSQSLKTIVATLSRHGLEHELLSSKQLKQRFPGNIRVPRNEVGLLDELGGVLYAEKALRALQELAEA 160 (401)
T ss_pred ECCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHCCCCCEECCCCEEEEEECCCCEECHHHHHHHHHHHHHH
T ss_conf 31345156315778605899999886255230331641232004762340686078874688746227899999999987
Q ss_pred CCCCCCCE-EEEECCCC----CCCCCCCCCCCCCCCCCEECCCCCCCC-EEE--EECCCC
Q ss_conf 02322211-33201122----222222222222221000014776642-024--652774
Q gi|254780283|r 75 FGTKIIQD-LVVSVDLD----RHPFLVETQSGDLWHADAVVIATGSEV-KWL--RLESEK 126 (321)
Q Consensus 75 ~~v~~~~~-~V~~i~~~----~~~~~v~~~~g~~~~a~~lIiAtG~~~-~~~--~ipG~~ 126 (321)
+|..++.+ .|..+..+ +...+|++.. +.|.+++||+..|+.- +++ ++.|++
T Consensus 161 ~Ga~v~d~~kV~~i~~~GesGe~~vt~kt~~-~sy~a~~lvvtaGaW~s~kLl~~l~Gie 219 (401)
T TIGR01377 161 HGAIVRDGTKVVEIKPDGESGELLVTVKTTK-DSYQAKKLVVTAGAWTSNKLLKKLGGIE 219 (401)
T ss_pred CCCEEECCCEEEEEEECCCCCCCEEEEEEEC-CEEECCEEEEECCCCHHHHHCCCCCCEE
T ss_conf 4968734860366542676789548999727-7032135789538861234313014232
No 242
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.62 E-value=6.1e-08 Score=64.97 Aligned_cols=38 Identities=37% Similarity=0.623 Sum_probs=34.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 67519999897779999999998699599996788-775
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
+++||||||+|.|||+||+.++..|.+|+|+||.. +||
T Consensus 10 ~e~DVvVVG~G~AGl~AA~~Aae~Ga~VivlEK~~~~GG 48 (584)
T PRK12835 10 RTVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48 (584)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 753879989678999999999988995899969999871
No 243
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.61 E-value=2.8e-07 Score=61.06 Aligned_cols=98 Identities=16% Similarity=0.232 Sum_probs=65.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-EE
Q ss_conf 51999989777999999999869959999678877568750100787747777897899986643232002322211-33
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-LV 84 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V 84 (321)
.+++|||||+.|+..|..+++.|.+|+|+++.+. ++ |.+. +++.+.+.+.+.+ .++++.+ .+
T Consensus 175 ~~v~IiGgG~ig~E~A~~~~~lG~~Vtli~~~~~---ll--------~~~D-----~~~~~~~~~~l~~-~i~i~~~~~v 237 (472)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQ---VI--------PAAD-----KDIVKVFTKRISK-QFNIMLETKV 237 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCC---CC--------CCCC-----HHHHHHHHHHHHH-CCCEEECCEE
T ss_conf 5599995647289999999852986899960455---45--------4349-----9999999999985-7809964479
Q ss_pred EECCCCCCCCCCCCC--C--CCCCCCCEECCCCCCCCEEE
Q ss_conf 201122222222222--2--22221000014776642024
Q gi|254780283|r 85 VSVDLDRHPFLVETQ--S--GDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 85 ~~i~~~~~~~~v~~~--~--g~~~~a~~lIiAtG~~~~~~ 120 (321)
..+..+++...+... + .+++++|.|++|+|-.|+.-
T Consensus 238 ~~~~~~~~~~~v~~~~~~~~~~~~~~D~vlva~Gr~Pn~~ 277 (472)
T PRK06467 238 TAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGK 277 (472)
T ss_pred EEEEEECCEEEEEEEECCCCEEEEEECEEEECCCCCCCCC
T ss_conf 9999939969999980898706998368999078610123
No 244
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.55 E-value=7.1e-08 Score=64.57 Aligned_cols=45 Identities=20% Similarity=0.275 Sum_probs=35.5
Q ss_pred ECCCCCC-CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0888554-7898289701268844567899997999999999999742
Q gi|254780283|r 270 MPDSTAT-SIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 270 ~~~~~~T-s~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
.+.++|| .+||+|.+|-+++... =..|+++|-+|+.|+.+++..+
T Consensus 323 L~~tLe~K~~~~Lf~AGQInGt~G--YeEAAAqGliAGiNAa~~~~Gk 368 (434)
T PRK05335 323 LDPTLQLKSRPNLFFAGQITGVEG--YVESAASGLLAGINAARLALGK 368 (434)
T ss_pred CCCCEEECCCCCCEECCCCCCCHH--HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 484416348798277113367418--8999998899999999996699
No 245
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.55 E-value=1.7e-07 Score=62.38 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=32.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 7519999897779999999998699599996788
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
+|||+|||||.|||+||+.|++.|++|+|+.+.+
T Consensus 2 k~DvlVIGgGLAGl~aAl~~a~~G~~v~lvs~Gq 35 (425)
T PRK05329 2 KFDVVVIGGGLAGLTCALALAEAGKRCAIVAKGQ 35 (425)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8778999952999999999997799389992784
No 246
>KOG2311 consensus
Probab=98.54 E-value=1.2e-07 Score=63.31 Aligned_cols=113 Identities=24% Similarity=0.371 Sum_probs=70.2
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC--CCCC---------C----EEEEE------------------CCC
Q ss_conf 7675199998977799999999986995999967--8877---------5----68750------------------100
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG--SDLG---------G----QLMIT------------------ESI 49 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~--~~~G---------G----~l~~~------------------~~i 49 (321)
+..|||+|||||-||..||..++|.|.+++|+.. +..| | .|+.. ..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~ 105 (679)
T KOG2311 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKV 105 (679)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEHHHCCHHHHHHHHHHHHHHH
T ss_conf 77555799878752048889887418734786325561013445765587665302443120025676541155556877
Q ss_pred CCC---C---CCCCCCCHHHHHHHHHHHHHHC-CCCCCCEEEEECCCCCC------CCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 787---7---4777789789998664323200-23222113320112222------22222222222210000147766
Q gi|254780283|r 50 ENY---P---GFATSIRGDWLMEQMRQQAENF-GTKIIQDLVVSVDLDRH------PFLVETQSGDLWHADAVVIATGS 115 (321)
Q Consensus 50 ~n~---~---g~~~~~~~~~l~~~~~~~~~~~-~v~~~~~~V~~i~~~~~------~~~v~~~~g~~~~a~~lIiAtG~ 115 (321)
-|- | |.+..++...+..++++.+... +.+++.+.|..+...+. .--|.+.+|..+.++.|||-||.
T Consensus 106 LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGT 184 (679)
T KOG2311 106 LNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGT 184 (679)
T ss_pred HHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHEEECCCCCCCEEEEEEEEECCCEECCCEEEEEECC
T ss_conf 5025797223708765199999999987526876001220013336316888734777899755727314349996132
No 247
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.54 E-value=5.4e-07 Score=59.45 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=36.6
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 9876751999989777999999999869959999678877
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG 40 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~G 40 (321)
|...++||+|||||..|.-+|..|+.+|++|+|+|+.+++
T Consensus 8 ~~~~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~A 47 (532)
T COG0578 8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLA 47 (532)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 4335777899898654699999998679849999547656
No 248
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase; InterPro: IPR012733 4-hydroxybenzoate 3-monooxygenase is a flavoprotein that converts its substrate to 3,4-dihydroxybenzoate, which subsequently enters the beta-ketioadipate pathway of aromatic degradation, using molecular oxygen and NADPH as shown below . 4-hydroxybenzoate + NADPH + O(2) = 3,4-dihydroxybenzoate + NADP(+) + H(2)O 4-hydroxybenzoate is an intermediate in the degradation of lignin and other aromatic plant compounds, and this enzyme is found extensively in soil bacteria. This enzyme is a homodimer where each subunit is composed of three distinct domains: an N-terminal flavin-binding domain with a beta-alpha-beta fold, a small substrate-binding domain composed of a single alpha helix and beta-sheet, and a C-terminal helical domain . The active site is found at the interface of all three domains. Catalysis occurs by a two-step reaction. In the first step, flavin is reduced by NADPH. Subsequently, the reduced flavin is oxygenated to a hydroperoxide which transfers the hydroxyl group to the substrate, forming 3,4-dihydroxybenzoate.; GO: 0018659 4-hydroxybenzoate 3-monooxygenase activity, 0050660 FAD binding, 0043639 benzoate catabolic process.
Probab=98.54 E-value=1.4e-07 Score=62.77 Aligned_cols=33 Identities=27% Similarity=0.520 Sum_probs=29.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
++|+|||||||||--.--|-+.|.+.+|+|+..
T Consensus 3 TqVaIiG~GPsGLLLGQLLh~~GId~viLEr~~ 35 (393)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDTVILERKS 35 (393)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 179997577357899999986698589972357
No 249
>TIGR02053 MerA mercuric reductase; InterPro: IPR011796 This entry represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH .; GO: 0016152 mercury (II) reductase activity, 0045340 mercury ion binding, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport, 0050787 detoxification of mercury ion.
Probab=98.54 E-value=7e-08 Score=64.60 Aligned_cols=102 Identities=20% Similarity=0.262 Sum_probs=73.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH-CCCCCCCEE-
Q ss_conf 519999897779999999998699599996788775687501007877477778978999866432320-023222113-
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAEN-FGTKIIQDL- 83 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~-~~v~~~~~~- 83 (321)
..++|||||+-|+..|--.+|+|.+|+|+.++. +++ |.. + ++......+.+.. =||++++..
T Consensus 182 ~sL~vIGgg~~g~E~aQ~faRLG~~V~~~~RS~---~ll--------~~~-e----peis~~V~~~l~~eeGi~~~~~~r 245 (494)
T TIGR02053 182 ESLVVIGGGAIGVELAQAFARLGSEVTILQRSE---RLL--------PRE-E----PEISAAVEEALAEEEGIEVVTSAR 245 (494)
T ss_pred EEEEEECCCHHHHHHHHHHHHCCCEEEHHHHHH---HHC--------CCC-C----HHHHHHHHHHHCCCCCEEEEECCE
T ss_conf 468888652899999999985776140367998---644--------646-8----889999999841478779980440
Q ss_pred -EEECCCCC-CCCCCCCCC---CCCCCCCEECCCCCCCCEEEEECCCC
Q ss_conf -32011222-222222222---22221000014776642024652774
Q gi|254780283|r 84 -VVSVDLDR-HPFLVETQS---GDLWHADAVVIATGSEVKWLRLESEK 126 (321)
Q Consensus 84 -V~~i~~~~-~~~~v~~~~---g~~~~a~~lIiAtG~~~~~~~ipG~~ 126 (321)
+..|...+ +...+..+. ..++++|.|++|||= .|++.|+.
T Consensus 246 ~~~~v~~rngg~~~~~~e~~~~~~~~eAd~lLVATGR---~PN~~gL~ 290 (494)
T TIGR02053 246 QVKAVSVRNGGGKIVTVEKNGGKAEVEADELLVATGR---RPNTDGLN 290 (494)
T ss_pred EEEEEEECCCCEEEEEEECCCCCCEEEHHHHHHHHCC---CCCCCCCC
T ss_conf 3554445279818999855898745743112555278---75666677
No 250
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.4e-07 Score=62.82 Aligned_cols=39 Identities=31% Similarity=0.427 Sum_probs=34.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCEEE
Q ss_conf 51999989777999999999869959999678-8775687
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLM 44 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~l~ 44 (321)
++|+|+|||.|||+||++|+.+|++|+|+|.. .+||++.
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~ 40 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVA 40 (485)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEE
T ss_conf 9289974627888999999868985399842676686131
No 251
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.53 E-value=1.3e-07 Score=63.11 Aligned_cols=36 Identities=25% Similarity=0.477 Sum_probs=32.3
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHH-CCCCEEEEECCC
Q ss_conf 767519999897779999999998-699599996788
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAAR-AMLKPVIIAGSD 38 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r-~g~~v~iie~~~ 38 (321)
..++||+||||||+||.+|..|+| .|.++.|+|+..
T Consensus 30 P~~vDVLIVGAGP~GL~lA~~Lar~~Gv~~~IIDk~~ 66 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLILAAQLSQFPEITTRIVERKP 66 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9858889999658999999998713799889992799
No 252
>PRK02106 choline dehydrogenase; Validated
Probab=98.52 E-value=1.3e-07 Score=63.01 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=34.6
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-CCCCEEEEECC
Q ss_conf 98767519999897779999999998-69959999678
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAAR-AMLKPVIIAGS 37 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r-~g~~v~iie~~ 37 (321)
|++.+||+||||||+||+..|.+|++ .+++|+|+|+.
T Consensus 1 ~~~~eyDyIIVGgG~AG~vvA~rLse~~~~~VllLEaG 38 (555)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG 38 (555)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 98871288998966899999999834989859998689
No 253
>pfam00070 Pyr_redox Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=98.50 E-value=7.9e-09 Score=70.14 Aligned_cols=66 Identities=33% Similarity=0.497 Sum_probs=52.7
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC--CCCC---CCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf 000010255654310121013332223443433221--1112---11223554433222231121148643
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKIL---QEKLFLQSNIDFLFDTEVVDVIGSIP 213 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~--~~~~---~~~~~~~~~i~~~~~~~v~~i~g~~~ 213 (321)
+++|||+|++|+|+|..|++++.+||++++.+++.. ++.. ..+.+++.+|++++++.++++.++..
T Consensus 1 rv~iiGgG~ig~E~A~~l~~~G~~Vtiie~~~~~l~~~d~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~~ 71 (82)
T pfam00070 1 RVVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLEKNGIEVLLNTTVEEIEGNGD 71 (82)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHCCHHHHHHHHHHHHHCCCEEECCCEEEEEEEECC
T ss_conf 99999988999999999986392789981257330227988999999999866999974999999999699
No 254
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.50 E-value=1.8e-07 Score=62.23 Aligned_cols=37 Identities=32% Similarity=0.616 Sum_probs=33.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 67519999897779999999998699599996788-775
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
.++||||||+| |||+||+.+++.|.+|+|+||.. +||
T Consensus 8 ~e~DVVVvG~G-aGl~AA~~Aa~~Ga~VivlEK~~~~GG 45 (515)
T PRK12837 8 EEVDVVVAGSG-GGVAGAYTAAREGLSVALVEATDKFGG 45 (515)
T ss_pred CCCCEEEECHH-HHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 87397998906-999999999987998899978898881
No 255
>PTZ00318 NADH dehydrogenase; Provisional
Probab=98.50 E-value=2e-07 Score=61.92 Aligned_cols=92 Identities=23% Similarity=0.338 Sum_probs=67.3
Q ss_pred EEEEECCCHHHHHHHHHHHHC--------------CCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 199998977799999999986--------------995999967887756875010078774777789789998664323
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARA--------------MLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQA 72 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~--------------g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~ 72 (321)
.++||||||.|...|-+|+.. ..+++|+|..+ ++ |.|+ +.+.++..+.+
T Consensus 181 tfVVVGGGpTGVElAgeLad~~~~~~~~~~~~l~~~~~V~Liea~~----iL--------p~f~-----~~ls~~a~~~L 243 (514)
T PTZ00318 181 HTVVVGGGPTGVEFAANLAEFFRDDVKNINTSLVPFCKVTVLEAGE----VF--------GSFD-----LRVRRWGKRRL 243 (514)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCEEEEEECHH----HH--------HCCC-----HHHHHHHHHHH
T ss_conf 2789777762032899999999988764281230100378860500----12--------1089-----89999999999
Q ss_pred HHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf 20023222113320112222222222222222100001477664202
Q gi|254780283|r 73 ENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 73 ~~~~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
++.|++++++.++.+..+ .+.+++|+.+.++.+|+|+|..++.
T Consensus 244 ~~~GVeV~~~~vv~v~~~----~v~~~~Ge~i~~~tvVWtAGV~a~p 286 (514)
T PTZ00318 244 DALGVRIVKGAVVAVTDK----EVFTKSGEVLPTGLVVWSTGVGPSP 286 (514)
T ss_pred HHCCEEEEECCEEEEECC----EEEECCCCEEECCEEEEECCCCCCC
T ss_conf 878949983628998689----5896798199866899915887670
No 256
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.47 E-value=7.8e-07 Score=58.50 Aligned_cols=94 Identities=24% Similarity=0.337 Sum_probs=66.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHH----CCCC--EEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 7519999897779999999998----6995--999967887756875010078774777789789998664323200232
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAAR----AMLK--PVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTK 78 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r----~g~~--v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~ 78 (321)
...++|+||||+|+..|..++. .+.+ ++++.... + .|.++ +.+.+.+.+.+++.|++
T Consensus 145 ~~~v~vvGgG~~gvE~a~~l~~~~~~~~~~~~v~i~~~~~----~--------l~~~~-----~~~~~~~~~~l~~~gI~ 207 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGAS----L--------LPGFP-----AKVRRLVLRLLARRGIE 207 (364)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC----C--------CHHCC-----HHHHHHHHHHHHHCCCE
T ss_conf 9645897858179999999999987468742799835775----1--------01259-----99999999999977956
Q ss_pred CCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf 2211-3320112222222222222222100001477664202
Q gi|254780283|r 79 IIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 79 ~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
++.+ +|.+++.+ .+.+++|+++.+|.+|+++|.+|+.
T Consensus 208 v~~~~~v~~v~~~----~v~l~~g~~i~~d~vi~~~G~~p~~ 245 (364)
T TIGR03169 208 VHEGAPVTRGPDG----ALILADGRTLPADAILWATGARAPP 245 (364)
T ss_pred EEECCEEEEECCC----CEEECCCCEEEEEEEEECCCCCCCH
T ss_conf 9837536897799----5183799789630899888877886
No 257
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit; InterPro: IPR012744 This entry describes NirB, the large subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirD, the small subunit (IPR012748 from INTERPRO). In a few bacteria such as Klebsiella pneumoniae and in fungi, the two regions are fused.; GO: 0008942 nitrite reductase [NAD(P)H] activity, 0050660 FAD binding, 0050661 NADP binding, 0042128 nitrate assimilation.
Probab=98.46 E-value=1.1e-07 Score=63.58 Aligned_cols=103 Identities=23% Similarity=0.224 Sum_probs=74.2
Q ss_pred CCCCCCEE------EEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHH-HHHHHHHH
Q ss_conf 98767519------999897779999999998699599996788775687501007877477778978999-86643232
Q gi|254780283|r 1 MASHDSKI------LIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLM-EQMRQQAE 73 (321)
Q Consensus 1 M~~~~~dV------vIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~-~~~~~~~~ 73 (321)
|+++-+|- +|||||-=||.||.-|...|.++-|||-.. .|+. ..+ ++.. ..|+..++
T Consensus 137 ~A~~~~~aGhtdGGaViGGGLLGLEAA~aL~~LG~~v~Vi~~~p---~LM~-----------~QL--D~~aG~lL~~~le 200 (813)
T TIGR02374 137 AAQRFKKAGHTDGGAVIGGGLLGLEAARALKNLGMDVSVIELAP---FLMA-----------KQL--DQTAGRLLQRELE 200 (813)
T ss_pred HHHHHHCCCCCCCCEEECCCHHHHHHHHHHHHCCCEEEHHHHHH---HHHH-----------HHH--HHHHHHHHHHHHH
T ss_conf 99863126766785588674158899999987797064467648---9899-----------999--9999999999998
Q ss_pred HCCCCCCC--E--EEEECCCC--CCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf 00232221--1--33201122--22222222222222100001477664202
Q gi|254780283|r 74 NFGTKIIQ--D--LVVSVDLD--RHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 74 ~~~v~~~~--~--~V~~i~~~--~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
+.|+.|+. + ++.-+..+ ...-++.++||+++++|-||+|+|.+||.
T Consensus 201 ~~G~~~l~Gt~k~t~eiv~~~d~~~~~~~rf~DG~~l~aDlvv~A~GirP~~ 252 (813)
T TIGR02374 201 KKGLTVLLGTEKDTVEIVGEDDVEKVERLRFKDGSSLEADLVVFAAGIRPRD 252 (813)
T ss_pred HCCCEEEECCCCCEEEEEECCCHHHHCEEECCCCCEEEECEEEEECCCCCCH
T ss_conf 5795798617611057641564012312242389788703799951566636
No 258
>KOG0685 consensus
Probab=98.46 E-value=4.5e-07 Score=59.91 Aligned_cols=48 Identities=31% Similarity=0.444 Sum_probs=38.0
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECC-CCCCEEEEECC
Q ss_conf 98767519999897779999999998699-59999678-87756875010
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAML-KPVIIAGS-DLGGQLMITES 48 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~-~~GG~l~~~~~ 48 (321)
|+....+|+|||||.|||+||..|...|. +++|+|.. +.||++...+.
T Consensus 17 ~~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~ 66 (498)
T KOG0685 17 KARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPF 66 (498)
T ss_pred HCCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEC
T ss_conf 24579649998985677999999998289648999704666755766872
No 259
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.43 E-value=8.8e-07 Score=58.20 Aligned_cols=100 Identities=16% Similarity=0.077 Sum_probs=68.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH-HHCCCCCCCE-
Q ss_conf 75199998977799999999986995999967887756875010078774777789789998664323-2002322211-
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQA-ENFGTKIIQD- 82 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~-~~~~v~~~~~- 82 (321)
-..++|||||.-|+.-|.--.+.|.+|+++|..+ +++ |.+. +++.+.+++.. ++-++++..+
T Consensus 320 Pk~m~IIGgGvIGlEFAsvy~aLGseVTvIE~~~---~IL--------P~~D-----~DIsk~ler~flK~rGI~i~~gt 383 (673)
T PTZ00153 320 KNYMGIIGMGIIGIEFADIYTALGSEIIFFDYSP---ELL--------PIID-----ADVAKYFERVFIKNKPMNVHLNT 383 (673)
T ss_pred CCEEEEECCCEEHHHHHHHHHHCCCEEEEEECCC---CCC--------CCCC-----HHHHHHHHHHHHHCCCCEEEECC
T ss_conf 8658998776401319999997698699995366---568--------9889-----99999999998640494899621
Q ss_pred EEEECCCCCCCCCCC-----------------CCCCCCCCCCEECCCCCCCCEEE
Q ss_conf 332011222222222-----------------22222221000014776642024
Q gi|254780283|r 83 LVVSVDLDRHPFLVE-----------------TQSGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~-----------------~~~g~~~~a~~lIiAtG~~~~~~ 120 (321)
.|..+........|. ..+.+++++|++++|+|-.|+.-
T Consensus 384 ~V~~v~~~~~g~~V~i~~~~~~~~e~~~~~~~~~~~k~leaD~vLVAvGR~PnT~ 438 (673)
T PTZ00153 384 EIEYIKAGGGGNPVIIGHRERSEGEDDNEGKAANDIKELHVDSCLVATGRKPNTN 438 (673)
T ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCEEEECCCCCCCCC
T ss_conf 7999986389857999622334444433222356651687189998526502778
No 260
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=98.41 E-value=3.7e-07 Score=60.41 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=33.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 7519999897779999999998699599996788-775
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
+..|||||||.|||+||--|++.|++|+|+|... .||
T Consensus 1 ~~~VvVIGaGIaGLTaAALLA~~G~~Vtl~E~h~q~GG 38 (499)
T TIGR02733 1 ETSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQLGG 38 (499)
T ss_pred CCEEEEEECCHHHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 97069981872678999999853996799974012787
No 261
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.41 E-value=5.8e-07 Score=59.23 Aligned_cols=44 Identities=25% Similarity=0.462 Sum_probs=38.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEE-CCCCCCEEEEEC
Q ss_conf 67519999897779999999998699599996-788775687501
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIA-GSDLGGQLMITE 47 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie-~~~~GG~l~~~~ 47 (321)
...||+|+|+|.|||+||.+|.|.|++|+|+| +++.||++....
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r 50 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTAR 50 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEE
T ss_conf 888689989726888999987646818999864677676467775
No 262
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.40 E-value=6e-07 Score=59.19 Aligned_cols=39 Identities=31% Similarity=0.522 Sum_probs=35.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 767519999897779999999998699599996788775
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG 41 (321)
..++||+|||||.+|+++|++|++.|.+|+++|++..++
T Consensus 2 ~~~~~vvIIGgGi~Gls~A~~La~~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40 (387)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 976439998986999999999997699199991798876
No 263
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.39 E-value=6.8e-07 Score=58.86 Aligned_cols=41 Identities=34% Similarity=0.468 Sum_probs=35.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC--CCEEEEECC-CCCCEEEEE
Q ss_conf 51999989777999999999869--959999678-877568750
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAM--LKPVIIAGS-DLGGQLMIT 46 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g--~~v~iie~~-~~GG~l~~~ 46 (321)
.+|+|||||.|||+||++|.+.+ .+++|+|++ +.||.+...
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~ 44 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTV 44 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEE
T ss_conf 93999878288899999999858998679983488778658998
No 264
>KOG1298 consensus
Probab=98.39 E-value=1.4e-06 Score=57.01 Aligned_cols=116 Identities=21% Similarity=0.330 Sum_probs=72.6
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC------------CCCCEEE-----EECCCCC------------
Q ss_conf 9876751999989777999999999869959999678------------8775687-----5010078------------
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS------------DLGGQLM-----ITESIEN------------ 51 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~------------~~GG~l~-----~~~~i~n------------ 51 (321)
|.+..+||+|||||-+|-+-|..|+|.|.+|.++|++ |+||.+. ...++++
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~if 120 (509)
T KOG1298 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIF 120 (509)
T ss_pred CCCCCCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCHHHHHHHHCHHHHHHCCCCEEEEEEEEE
T ss_conf 46875447998886227899999850785799996345561678877608506689987087877632022375226998
Q ss_pred ---------CC--CCCCCCCH-----HHHHHHHHHHH-HHCCCCCCCEEEEECCCCCCC---CCCCCCCCCCCCCC--EE
Q ss_conf ---------77--47777897-----89998664323-200232221133201122222---22222222222100--00
Q gi|254780283|r 52 ---------YP--GFATSIRG-----DWLMEQMRQQA-ENFGTKIIQDLVVSVDLDRHP---FLVETQSGDLWHAD--AV 109 (321)
Q Consensus 52 ---------~~--g~~~~~~~-----~~l~~~~~~~~-~~~~v~~~~~~V~~i~~~~~~---~~v~~~~g~~~~a~--~l 109 (321)
|| .|+...+| -.++.++++-+ ..-|+++.+++|.++-.+++. .+.+.+.|++.++. --
T Consensus 121 k~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLT 200 (509)
T KOG1298 121 KDGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLT 200 (509)
T ss_pred ECCCEEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHCCCCEEEEEEEHHHHHHCCCEEEEEEEECCCCCEEEEECCEE
T ss_conf 47935533577767888743201223699999999872489708861027878731685975898627885578735558
Q ss_pred CCCCCCC
Q ss_conf 1477664
Q gi|254780283|r 110 VIATGSE 116 (321)
Q Consensus 110 IiAtG~~ 116 (321)
|+|-|+-
T Consensus 201 vVCDGcf 207 (509)
T KOG1298 201 VVCDGCF 207 (509)
T ss_pred EEECCHH
T ss_conf 9941256
No 265
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.37 E-value=1e-06 Score=57.81 Aligned_cols=41 Identities=22% Similarity=0.522 Sum_probs=33.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHC------CCCEEEEECC-CCCCEEEEE
Q ss_conf 5199998977799999999986------9959999678-877568750
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARA------MLKPVIIAGS-DLGGQLMIT 46 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~------g~~v~iie~~-~~GG~l~~~ 46 (321)
++|+|||||.+||+||++|.|. +.+++|+|++ +.||.+...
T Consensus 2 k~vaVIGgGISGLsaA~~L~~~~~~~~~~~~vtl~Eas~r~GG~I~T~ 49 (466)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSV 49 (466)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCEEEEE
T ss_conf 759998997899999999987255558998679997799886779899
No 266
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.34 E-value=1.8e-06 Score=56.36 Aligned_cols=77 Identities=21% Similarity=0.428 Sum_probs=52.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCCCC-----CEEEEECCCCC-------------------------CC
Q ss_conf 5199998977799999999986--9959999678877-----56875010078-------------------------77
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARA--MLKPVIIAGSDLG-----GQLMITESIEN-------------------------YP 53 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~--g~~v~iie~~~~G-----G~l~~~~~i~n-------------------------~~ 53 (321)
.+|+|||||||||..|+-++++ +++++|+|++.++ |.++.-..+.| +.
T Consensus 1 MkI~~iGGGPaGLYfailmK~~~P~~eI~V~ErN~~~dTfGwGVVfsD~tL~~l~~~Dp~s~~~i~~~f~~Wddi~v~~~ 80 (770)
T PRK08255 1 MRIVCIGGGPAGLYFGLLMKLRDPAHEVTVVERNRPYDTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIEVHFK 80 (770)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEECCHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 94999778758999999998658999747984279999524468747266645554399999999997478636699968
Q ss_pred ---------CCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf ---------477778978999866432320023222113
Q gi|254780283|r 54 ---------GFATSIRGDWLMEQMRQQAENFGTKIIQDL 83 (321)
Q Consensus 54 ---------g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 83 (321)
|| .++...+|..-+++.+..+||++..++
T Consensus 81 g~~~~~~GhgF-~gi~R~~LL~iLq~Ra~~lGV~l~fe~ 118 (770)
T PRK08255 81 GRRIRSGGHGF-AGIGRKRLLNILQARCEELGVKLVFET 118 (770)
T ss_pred CEEEEECCCEE-EHHHHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 90799669606-647499999999999998398489326
No 267
>KOG1336 consensus
Probab=98.26 E-value=4e-06 Score=54.34 Aligned_cols=105 Identities=21% Similarity=0.202 Sum_probs=80.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 67519999897779999999998699599996788775687501007877477778978999866432320023222113
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDL 83 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 83 (321)
....|+++|+|..|+.+|-.+.-.++++++++++.- ++ + + .-++.+.....+..++.+++++.++
T Consensus 212 ~~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~---~~--~------~----lf~~~i~~~~~~y~e~kgVk~~~~t 276 (478)
T KOG1336 212 LGGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPW---LL--P------R----LFGPSIGQFYEDYYENKGVKFYLGT 276 (478)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCC---CH--H------H----HHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 585699977528899999999745835799726764---10--4------3----4417789999999984593999804
Q ss_pred -EEECCCCC--CCCCCCCCCCCCCCCCEECCCCCCCCEEEEEC
Q ss_conf -32011222--22222222222221000014776642024652
Q gi|254780283|r 84 -VVSVDLDR--HPFLVETQSGDLWHADAVVIATGSEVKWLRLE 123 (321)
Q Consensus 84 -V~~i~~~~--~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ip 123 (321)
+.++.... ....|.+.+++++.+|-||+.+|+.|+...+.
T Consensus 277 ~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336 277 VVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred CEEECCCCCCCCEEEEEECCCCEECCCEEEEEECCCCCCCCCC
T ss_conf 2000124788737999812487742676998016624665443
No 268
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase; InterPro: IPR004379 UDP-galactopyranose mutase (5.4.99.9 from EC) is involved in the conversion of UDP-GALP into UDP-GALF through a 2-keto intermediate, and contains FAD as a cofactor. The gene is known as glf, ceoA, and rfbD. It is known experimentally in Escherichia coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.; GO: 0008767 UDP-galactopyranose mutase activity, 0009103 lipopolysaccharide biosynthetic process.
Probab=98.25 E-value=1.5e-06 Score=56.78 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=37.0
Q ss_pred CCEEEEECCCHHHHHHHH-HHHHCCCCEEEEEC-CCCCCEEEE
Q ss_conf 751999989777999999-99986995999967-887756875
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAI-YAARAMLKPVIIAG-SDLGGQLMI 45 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~-~l~r~g~~v~iie~-~~~GG~l~~ 45 (321)
.||.+|||||-+|.-+|- .|++.|.+|+|+|| ++.||.|+.
T Consensus 1 ~FdyiivGaGl~G~V~A~r~l~~lgk~VLvvEkR~hiGGNcYd 43 (390)
T TIGR00031 1 MFDYIIVGAGLSGIVLANRILAQLGKRVLVVEKRNHIGGNCYD 43 (390)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCC
T ss_conf 9517998663677999999999709988999730665873444
No 269
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase; InterPro: IPR006324 These sequences represent glutathione reductases of plants and some bacteria, including cyanobacteria.; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=98.20 E-value=1.6e-06 Score=56.63 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=75.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 67519999897779999999998699599996788775687501007877477778978999866432320023222113
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDL 83 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 83 (321)
.=+.|+|||||+-+..-|---+=+|.+++|+=|.+. + .-||. +++...+.+.+++-|++++...
T Consensus 184 lPk~i~v~GgGYIAvEFA~I~~GLG~~vtl~yRg~~---i--------L~GFD-----~d~R~~~~~~le~~Gi~i~~~~ 247 (478)
T TIGR01424 184 LPKSILVVGGGYIAVEFAGIYRGLGVQVTLIYRGEK---I--------LRGFD-----DDMRAELAEELEERGIRIVPKD 247 (478)
T ss_pred CCCEEEEECCCEEEEEHHHHHCCCCCEEEEEECCCC---C--------CCCCC-----HHHHHHHHHHHHCCCEEEEECC
T ss_conf 554689986760012022232367832523451665---4--------67686-----8999999998752973895010
Q ss_pred -EEECCCCCCC-CCCCCC--CCCCCCCCEECCCCCCCCEEEEECCCC
Q ss_conf -3201122222-222222--222221000014776642024652774
Q gi|254780283|r 84 -VVSVDLDRHP-FLVETQ--SGDLWHADAVVIATGSEVKWLRLESEK 126 (321)
Q Consensus 84 -V~~i~~~~~~-~~v~~~--~g~~~~a~~lIiAtG~~~~~~~ipG~~ 126 (321)
+++|...++. ..+.++ +++++.+|.+++||| |.|++.|+-
T Consensus 248 ~~~~i~~~~~GR~~~~~sGe~~~~~vAd~vl~AtG---R~Pn~~GLg 291 (478)
T TIGR01424 248 SVTSIEKVDDGRLKVTLSGEKDEEIVADVVLFATG---RVPNVKGLG 291 (478)
T ss_pred HHHHHHCCCCCCEEEEEECCCCCCEEEEEEEEECC---CCCCCCCCC
T ss_conf 44364207898789997468998165433232008---877657636
No 270
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.14 E-value=1.8e-07 Score=62.19 Aligned_cols=85 Identities=22% Similarity=0.416 Sum_probs=56.4
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC-----------CCCCCCCC---CCCCCCCCCCCCCCCEEECC
Q ss_conf 12210000102556543101210133322234434332-----------21111211---22355443322223112114
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL-----------RSEKILQE---KLFLQSNIDFLFDTEVVDVI 209 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l-----------~~~~~~~~---~~~~~~~i~~~~~~~v~~i~ 209 (321)
.++|+|+|||+|++|+-+|..|++.|-+||++++.+++ +-++..++ .++++.+|+|.+|+.|-+
T Consensus 308 ~~gkKVAVIGsGPAGLaaA~~Lar~G~~VTVfE~~~~~GGlL~yGIP~fRLPK~vv~rei~~l~~lGV~f~~n~~VGk-- 385 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR-- 385 (639)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCEECC--
T ss_conf 889989998975899999999997599069993688889868535874527778999999999864988991967798--
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8643334444433314203210000011222211123223
Q gi|254780283|r 210 GSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYK 249 (321)
Q Consensus 210 g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 249 (321)
. +.+.+ ..-+.|.|++++|..
T Consensus 386 --D-----------it~~e------L~~~yDAVflg~Ga~ 406 (639)
T PRK12809 386 --D-----------ITFSD------LTSEYDAVFIGVGTY 406 (639)
T ss_pred --C-----------CCHHH------HHHHCCEEEEEECCC
T ss_conf --6-----------88999------973179899973678
No 271
>TIGR01789 lycopene_cycl lycopene cyclase; InterPro: IPR008461 This family consists of several bacterial Lycopene cyclase (CrtY) proteins. Lycopene cyclase is a key enzyme which converts the acyclic carotenoid lycopene into the cyclic carotenoid beta-carotene .; GO: 0045436 lycopene beta cyclase activity, 0016117 carotenoid biosynthetic process.
Probab=98.12 E-value=1.6e-05 Score=50.79 Aligned_cols=122 Identities=24% Similarity=0.361 Sum_probs=78.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC--CEEEEECC-CCCCEEEEEC----------------CCCCCCC-CC----CC----
Q ss_conf 19999897779999999998699--59999678-8775687501----------------0078774-77----77----
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAML--KPVIIAGS-DLGGQLMITE----------------SIENYPG-FA----TS---- 58 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~--~v~iie~~-~~GG~l~~~~----------------~i~n~~g-~~----~~---- 58 (321)
|++|||||-||---|+.|.+... +++|||.. ..||.-+|+- ..++||| +. ..
T Consensus 1 D~i~vGgGLAggLIALrL~~arPd~Ri~~IEa~~~igGNHtWSffd~Dls~~qhawla~lv~~~WpgGYeVRFp~~rrkL 80 (392)
T TIGR01789 1 DVIVVGGGLAGGLIALRLQDARPDLRILVIEAAASIGGNHTWSFFDADLSDAQHAWLADLVVYDWPGGYEVRFPKRRRKL 80 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCCCEECCHHHHHHH
T ss_conf 97887273357899998752598728999843776688753010036667435777653401328897133355554332
Q ss_pred ------CCHHHHHHHHHHHHHHCCCC-CCCE-EEEECCCCCCCCCCC---CCCCCCCCCCEECCCCCCCCEEEEECCCCC
Q ss_conf ------89789998664323200232-2211-332011222222222---222222210000147766420246527743
Q gi|254780283|r 59 ------IRGDWLMEQMRQQAENFGTK-IIQD-LVVSVDLDRHPFLVE---TQSGDLWHADAVVIATGSEVKWLRLESEKK 127 (321)
Q Consensus 59 ------~~~~~l~~~~~~~~~~~~v~-~~~~-~V~~i~~~~~~~~v~---~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~ 127 (321)
++...|.+.+.+ +|+-. ++.+ ++++++.+. ..+. -..|+++.|.+||=|=|.+|+.-=--|++.
T Consensus 81 ~taY~S~tStrf~e~l~q---~fpe~s~~~~r~a~~~~Ad~--V~L~PsqyG~g~~i~A~~VID~Rg~~P~~~L~~GfQ~ 155 (392)
T TIGR01789 81 KTAYLSMTSTRFREELEQ---KFPERSVLLDRKAVEVDADA--VDLEPSQYGNGRVIRARAVIDARGFKPSAALKVGFQV 155 (392)
T ss_pred HCCCCCCHHHHHHHHHHH---HCCCCEEEECCEEEEEEECE--EEECCCCCCCCCEEEEEEEEECCCCCCCCCCCCCHHH
T ss_conf 102211001778999998---76872056401567766075--6626544689626764027725888777210253234
Q ss_pred CCEEEC
Q ss_conf 320210
Q gi|254780283|r 128 FQGFGV 133 (321)
Q Consensus 128 ~~~~~v 133 (321)
|.|+.+
T Consensus 156 FlG~e~ 161 (392)
T TIGR01789 156 FLGREV 161 (392)
T ss_pred HHCCCH
T ss_conf 423200
No 272
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.11 E-value=2.5e-07 Score=61.41 Aligned_cols=86 Identities=27% Similarity=0.377 Sum_probs=55.3
Q ss_pred CCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC-----------CCCCCCC---CCCCCCCCCCCCCCEEECCC
Q ss_conf 221000010255654310121013332223443433221-----------1112112---23554433222231121148
Q gi|254780283|r 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS-----------EKILQEK---LFLQSNIDFLFDTEVVDVIG 210 (321)
Q Consensus 145 ~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~-----------~~~~~~~---~~~~~~i~~~~~~~v~~i~g 210 (321)
.+|+|+|||+|++|+-+|.+|++.|-+|+++++.+++.. ++..+++ .++..+|++.+++.+-+
T Consensus 142 ~gkkVAVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GGll~yGIP~~RLpk~v~~~ei~~l~~~GV~~~~n~~VG~--- 218 (472)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFERDDRIGGLLRYGIPDFKLEKDVIDRRIELMEGEGIEFRTGVEVGK--- 218 (472)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEECEECCC---
T ss_conf 89989998977899999999986697589972577777546531788555358999999999857978990523187---
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf 643334444433314203210000011222211123223-56
Q gi|254780283|r 211 SIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYK-PN 251 (321)
Q Consensus 211 ~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~-pn 251 (321)
. +.+. ...-+.|.|++++|.. |+
T Consensus 219 -d-----------it~~------~L~~~yDAV~la~Ga~~~r 242 (472)
T PRK12810 219 -D-----------ITAE------QLLAEYDAVFLGGGAYKPR 242 (472)
T ss_pred -C-----------CCHH------HHHCCCCEEEEECCCCCCC
T ss_conf -5-----------7699------9850579899903778785
No 273
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.11 E-value=4.2e-06 Score=54.22 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=31.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 7519999897779999999998699599996788
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
+|||+|||||-|||+||+.|...|.++.|+.+.+
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 6307997672888899999996588079985770
No 274
>pfam01593 Amino_oxidase Flavin containing amine oxidoreductase. This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.
Probab=98.09 E-value=7.5e-06 Score=52.77 Aligned_cols=30 Identities=27% Similarity=0.361 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHCCCCEEEEECC-CCCCEEE
Q ss_conf 77999999999869959999678-8775687
Q gi|254780283|r 15 PAGYTAAIYAARAMLKPVIIAGS-DLGGQLM 44 (321)
Q Consensus 15 pAGl~aA~~l~r~g~~v~iie~~-~~GG~l~ 44 (321)
.|||+||.+|+++|++|+|+|++ ++||++.
T Consensus 1 isGL~aA~~L~~~G~~V~vlEa~~riGGr~~ 31 (444)
T pfam01593 1 LAGLAAARELLRAGFDVTVLEARDRVGGRIR 31 (444)
T ss_pred CHHHHHHHHHHHCCCCEEEECCCCCCCCCEE
T ss_conf 9289999999858999999937998828766
No 275
>TIGR01318 gltD_gamma_fam glutamate synthase, small subunit; InterPro: IPR006006 One pathway for the assimilation of ammonia and glutamate biosynthesis involves glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate. 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including Escherichia coli. ; GO: 0016639 oxidoreductase activity acting on the CH-NH2 group of donors NAD or NADP as acceptor, 0006537 glutamate biosynthetic process.
Probab=98.07 E-value=6.1e-07 Score=59.11 Aligned_cols=63 Identities=27% Similarity=0.404 Sum_probs=50.1
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC-----------CCCCCCC---CCCCCCCCCCCCCCCCEE
Q ss_conf 12210000102556543101210133322234434332-----------2111121---122355443322223112
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL-----------RSEKILQ---EKLFLQSNIDFLFDTEVV 206 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l-----------~~~~~~~---~~~~~~~~i~~~~~~~v~ 206 (321)
..+|+|+|||+|+.|+-||..|.|-|.+|+++-|-|++ +-+|... .+++...||+|.+|++|-
T Consensus 141 ~~g~rVAviGAGPAGLaCAD~L~RaGV~v~VfDRhP~iGGLLtFGIPsFKLdK~V~~~Rr~if~~MGi~F~Ln~EvG 217 (480)
T TIGR01318 141 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFKLNTEVG 217 (480)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEECCCEEE
T ss_conf 07827899778860257999875178559997477030760136888511027899999999975892786581650
No 276
>TIGR01373 soxB sarcosine oxidase, beta subunit family; InterPro: IPR006278 These sequences represent the beta subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. The model is designated as subfamily rather than equivalog for this reason. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) forms that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form.; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=97.97 E-value=1.9e-05 Score=50.40 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=45.6
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC-CC-CEEEEECCCCCCEEE--EECCC-CCCCCCCCCCCHHHHHHHHH
Q ss_conf 87675199998977799999999986-99-599996788775687--50100-78774777789789998664
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARA-ML-KPVIIAGSDLGGQLM--ITESI-ENYPGFATSIRGDWLMEQMR 69 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~-g~-~v~iie~~~~GG~l~--~~~~i-~n~~g~~~~~~~~~l~~~~~ 69 (321)
.+.+|||+|||||==||+.|+||++. |. +|.|+||.=+||..+ ++.-+ -||+ +|+...=.|+.-++.
T Consensus 27 PK~~YDviIvGgGGHGLATAYYLA~~hGItnVAVlEKgwlGgGN~gRNTTivRSNYl-~p~s~~~Ye~a~kLw 98 (407)
T TIGR01373 27 PKPEYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRNTTIVRSNYL-YPESAELYEHAMKLW 98 (407)
T ss_pred CCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCEEEEEECC-CCCCHHHHHHHHHHH
T ss_conf 688546788868860689999988646940689985062168866434214654102-645223788898886
No 277
>KOG2614 consensus
Probab=97.97 E-value=5.6e-05 Score=47.67 Aligned_cols=34 Identities=24% Similarity=0.517 Sum_probs=31.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 7519999897779999999998699599996788
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
+-+|+|||||-+|+++|..+.|+|.+++|+|+.+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e 35 (420)
T KOG2614 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRE 35 (420)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 9748998883898999999987587489986214
No 278
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.96 E-value=4.2e-07 Score=60.08 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=25.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC-EEEEECC
Q ss_conf 75199998977799999999986995-9999678
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLK-PVIIAGS 37 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~-v~iie~~ 37 (321)
.++|+|||||--++=||..+.|.|.+ |+++-+.
T Consensus 323 GkkVvVIGGGNtAmD~ARTA~RlGA~~VtivyRR 356 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred CCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8852486688138999999987489758998337
No 279
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.96 E-value=2.3e-05 Score=49.90 Aligned_cols=42 Identities=26% Similarity=0.329 Sum_probs=37.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCEEEEE
Q ss_conf 75199998977799999999986995999967-8877568750
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-SDLGGQLMIT 46 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-~~~GG~l~~~ 46 (321)
.+|++|+|+|.+|...|..|++.|.+|+|+|+ +++||.++..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde 43 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDE 43 (374)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf 9758998776268899999997598799996256678754343
No 280
>PRK13984 putative oxidoreductase; Provisional
Probab=97.96 E-value=5e-07 Score=59.65 Aligned_cols=86 Identities=20% Similarity=0.286 Sum_probs=57.0
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCC-----------CCCCCCC---CCCCCCCCCCCCCCCEEECC
Q ss_conf 122100001025565431012101333222344343322-----------1111211---22355443322223112114
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLR-----------SEKILQE---KLFLQSNIDFLFDTEVVDVI 209 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~-----------~~~~~~~---~~~~~~~i~~~~~~~v~~i~ 209 (321)
..||+|+|||+|++|+-+|..|++.|-+||++++.+++. -++..++ .++++.+|+|.+|+.|-+
T Consensus 281 ~tGKKVAVIGsGPAGLaaA~~Lar~Gh~VtVFE~~~~~GGlL~yGIP~fRLpk~vv~rei~~i~~~GV~f~~n~~VGk-- 358 (604)
T PRK13984 281 KKGKKVAIVGSGPAGLSAAYFLATMGYEVEVYESLSKPGGVMRYGIPSYRLPDEALDKDIAFIEALGVKIHTNTRVGK-- 358 (604)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC--
T ss_conf 789989998986899999999998698689974567789723315872228789999999999972989976857798--
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 86433344444333142032100000112222111232235
Q gi|254780283|r 210 GSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKP 250 (321)
Q Consensus 210 g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p 250 (321)
. +.+.+ ..-..|.|++++|..-
T Consensus 359 --D-----------it~ee------L~~~yDAVfLa~Ga~~ 380 (604)
T PRK13984 359 --D-----------ISLEE------LREKHDAVFVSTGFTL 380 (604)
T ss_pred --C-----------CCHHH------HHHCCCEEEEECCCCC
T ss_conf --4-----------78999------9705899999538887
No 281
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.94 E-value=6e-07 Score=59.16 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=25.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECC
Q ss_conf 7519999897779999999998699-59999678
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAML-KPVIIAGS 37 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~ 37 (321)
.++|+|||||-.++-||..+.|.|. +|+++-+.
T Consensus 267 Gk~VvVIGGGntAmD~artA~RlGa~~V~ivyrr 300 (560)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVVIVYRR 300 (560)
T ss_pred CCEEEEECCCCHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 8868998998228999999997389769998314
No 282
>PRK12831 putative oxidoreductase; Provisional
Probab=97.93 E-value=7.4e-07 Score=58.62 Aligned_cols=38 Identities=34% Similarity=0.295 Sum_probs=34.5
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 12210000102556543101210133322234434332
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL 181 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l 181 (321)
..+|+|+|||+|++|+-+|.+|++.|-+||++++.+.+
T Consensus 138 ~~gkkVAVIGsGPAGLsaA~~La~~G~~VtVfE~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKKGYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEECCCCCC
T ss_conf 89998999897689999999999769917998278888
No 283
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.92 E-value=6.8e-07 Score=58.84 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=55.7
Q ss_pred CCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCC-----------CCCCCCC---CCCCCCCCCCCCCCCEEECCC
Q ss_conf 22100001025565431012101333222344343322-----------1111211---223554433222231121148
Q gi|254780283|r 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLR-----------SEKILQE---KLFLQSNIDFLFDTEVVDVIG 210 (321)
Q Consensus 145 ~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~-----------~~~~~~~---~~~~~~~i~~~~~~~v~~i~g 210 (321)
.||+|+|||+|++|+-+|..|++.|-+||++++.++.. -++..++ .++++.+|+|.++..+-+
T Consensus 326 tGKkVAIIGsGPAGLsaA~~Lar~G~~VTVFE~~~~~GGlL~yGIP~fRLpk~vv~~ei~~l~~lGV~f~~n~~VGk--- 402 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLTRNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIHFELNCEVGK--- 402 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECC---
T ss_conf 89989998977899999999997697579952577788667524862227789999999999826988983717687---
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 643334444433314203210000011222211123223
Q gi|254780283|r 211 SIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYK 249 (321)
Q Consensus 211 ~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 249 (321)
. +.+.+ ..-+.|.|++++|..
T Consensus 403 -D-----------itl~e------L~~~yDAVfla~Ga~ 423 (654)
T PRK12769 403 -D-----------ISLES------LLEDYDAVFVGVGTY 423 (654)
T ss_pred -C-----------CCHHH------HHHCCCEEEEECCCC
T ss_conf -6-----------58999------973699899951788
No 284
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.91 E-value=9.6e-07 Score=57.98 Aligned_cols=85 Identities=21% Similarity=0.288 Sum_probs=53.9
Q ss_pred CCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCC-----------CCCCCCC---CCCCCCCCCCCCCCCEEECCC
Q ss_conf 22100001025565431012101333222344343322-----------1111211---223554433222231121148
Q gi|254780283|r 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLR-----------SEKILQE---KLFLQSNIDFLFDTEVVDVIG 210 (321)
Q Consensus 145 ~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~-----------~~~~~~~---~~~~~~~i~~~~~~~v~~i~g 210 (321)
.+|+|+|||+|++|+-+|.+|++.|-+||++++.+... -++..++ ..+++.+|++.+|+.+-+-
T Consensus 438 ~GkKVAVIGsGPAGLsaA~~La~~G~~VtVFE~~~~~GG~L~yGIP~fRLPk~iv~~eI~~l~~lGV~~~~n~~vGkd-- 515 (760)
T PRK12778 438 NGIKVAVIGSGPAGLSFAGDMAKYGYDVTVFEALHEIGGVLKYGIPEFRLPNKIVDVEIENLVKMGVTFEKDCIVGKT-- 515 (760)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCC--
T ss_conf 899899989778999999999977990699805888897576548611087899999999998649799899577886--
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 643334444433314203210000011222211123223
Q gi|254780283|r 211 SIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYK 249 (321)
Q Consensus 211 ~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 249 (321)
+.+. +.+.-..|.|++++|..
T Consensus 516 -------------it~~-----eL~~egyDAVfla~Ga~ 536 (760)
T PRK12778 516 -------------ISVE-----ELEEEGFKGIFVASGAG 536 (760)
T ss_pred -------------CCHH-----HHHHCCCCEEEEECCCC
T ss_conf -------------8999-----99758899999940678
No 285
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase; InterPro: IPR005982 Reactive oxygen species (ROS) are known mediators of intracellular signaling cascades. Excessive production of ROS may, however, lead to oxidative stress, loss of cell function, and ultimately apoptosis or necrosis. A balance between oxidant and antioxidant intracellular systems is hence vital for cell function, regulation, and adaptation to diverse growth conditions. Thioredoxin reductase in conjunction with thioredoxin is a ubiquitous oxidoreductase system with antioxidant and redox regulatory roles. Thioredoxin reductase (1.8.1.9 from EC) reduces oxidised thioredoxin in the presence of NADPH. Reduced thioredoxin serves as an electron donor for thioredoxin peroxidase which consequently reduces H_2O_2 to H_2O. In mammals, extracellular forms of Trx also have cytokine-like effects. Mammalian TrxR has a highly reactive active site selenocysteine residue resulting in a profound reductive capacity, reducing several substrates in addition to Trx .; GO: 0004791 thioredoxin-disulfide reductase activity, 0019430 removal of superoxide radicals, 0005737 cytoplasm.
Probab=97.91 E-value=4.4e-05 Score=48.30 Aligned_cols=103 Identities=20% Similarity=0.297 Sum_probs=74.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 6751999989777999999999869959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
+.++|+|||||=.-+.=|+||.+.+.+|.||-|.+- |+.. +-+.+++++.-+ -+|+++++
T Consensus 150 k~K~V~VvGGGdsA~eEA~yL~~~a~kV~lvHRRd~---------------fRA~---k~~~~r~~~~~e-G~I~~l~n~ 210 (321)
T TIGR01292 150 KNKEVAVVGGGDSALEEALYLTRIAKKVTLVHRRDK---------------FRAE---KILLDRLKKNPE-GKIEFLWNS 210 (321)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCC---------------CCCC---HHHHHHHHHCCC-CCEEEECCC
T ss_conf 598899987982488888999853876799977986---------------3632---899989983789-878996486
Q ss_pred EEEECCCCC--CCCCCC-----CCCCCCCCCCEECCCCCCCCEEEEECCC
Q ss_conf 332011222--222222-----2222222100001477664202465277
Q gi|254780283|r 83 LVVSVDLDR--HPFLVE-----TQSGDLWHADAVVIATGSEVKWLRLESE 125 (321)
Q Consensus 83 ~V~~i~~~~--~~~~v~-----~~~g~~~~a~~lIiAtG~~~~~~~ipG~ 125 (321)
+|+.|.-++ .--.|. +.+.+++..+-|.+|.|-.|+.=.+++.
T Consensus 211 ~v~Ei~G~~~~~V~~v~i~N~~t~e~~~l~vdGvF~aIG~~P~t~~~~~~ 260 (321)
T TIGR01292 211 TVEEIVGDNSKKVESVKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL 260 (321)
T ss_pred EEEEEECCCCEEEEEEEEEECCCCEEEEEEECEEEEEECCCCCHHHHHCC
T ss_conf 89999617831553358996238848899844478984120320576507
No 286
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.90 E-value=2.7e-05 Score=49.51 Aligned_cols=46 Identities=28% Similarity=0.444 Sum_probs=39.0
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC---CCCCEEEEE
Q ss_conf 9876751999989777999999999869959999678---877568750
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS---DLGGQLMIT 46 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~---~~GG~l~~~ 46 (321)
|..-++||+|+|+|-|||-||-+++..|.+|+|+|.+ .+|||.+|+
T Consensus 1 ~d~~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAfWS 49 (552)
T COG3573 1 SDGLTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAFWS 49 (552)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEEE
T ss_conf 9866442799875279889999887267659997055545656513431
No 287
>PRK10262 thioredoxin reductase; Provisional
Probab=97.89 E-value=7.4e-05 Score=46.96 Aligned_cols=99 Identities=16% Similarity=0.231 Sum_probs=54.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 6751999989777999999999869959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
+.++|+|||||..++-.|++|++.+.+++++.+.+. |+.. +.+.+++.+.+++-++.+..+
T Consensus 145 ~~k~VaViGgG~~A~d~A~~L~~~a~~V~lv~rr~~---------------~~a~---~~~~~~~~~~~e~~~i~~~~~~ 206 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDG---------------FRAE---KILIKRLMDKVENGNIILHTNR 206 (321)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCEEEEEEECCC---------------CCCC---HHHHHHHHHHHHCCCEEEECCC
T ss_conf 898799991888899999999976198999974465---------------5627---8899999977635855874370
Q ss_pred EEEECCCCCCC---CCCCC----CCCCCCCCCEECCCCCCCCEEE
Q ss_conf 33201122222---22222----2222221000014776642024
Q gi|254780283|r 83 LVVSVDLDRHP---FLVET----QSGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 83 ~V~~i~~~~~~---~~v~~----~~g~~~~a~~lIiAtG~~~~~~ 120 (321)
.+..+..++.. .++.. ++.+.+.++.++++.|..|+..
T Consensus 207 ~i~~i~g~~~~v~gv~l~~~~~~~~~~~~~~d~v~v~~G~~pn~~ 251 (321)
T PRK10262 207 TLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA 251 (321)
T ss_pred EEEEEECCCCEEEEEEEEECCCCCEEEEEEECEEEEEECCCCCHH
T ss_conf 789997787658999999377786679986023899955767847
No 288
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric; InterPro: IPR006004 One pathway for the assimilation of ammonia and glutamate biosynthesis involves homotetrameric glutamate synthase (1.4.1.13 from EC) which transfers the amide group of glutamine to 2-oxoglutarate to yield two molecules of glutamate . 2 L-glutamate + NADP^+ = L-glutamine + 2-oxoglutarate + NADPH + H^+. .
Probab=97.89 E-value=5.8e-05 Score=47.60 Aligned_cols=120 Identities=23% Similarity=0.256 Sum_probs=69.1
Q ss_pred CEECCCCCCCCEEE----EECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCC----
Q ss_conf 00014776642024----6527743320210121111111112210000102556543101210133322234434----
Q gi|254780283|r 107 DAVVIATGSEVKWL----RLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRR---- 178 (321)
Q Consensus 107 ~~lIiAtG~~~~~~----~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~---- 178 (321)
...=++.|+-+++. -.-|.+.-. +..+..+.+. ..++|+|||+|+.|+-+|.+|++.|-+||+++-=
T Consensus 104 vg~pV~IGaLErFVaD~~R~hGi~~el---lref~ek~p~--t~~kVAViGaGPAGL~cA~elAk~Gh~VtvfEALhKPG 178 (462)
T TIGR01316 104 VGKPVAIGALERFVADYAREHGIEEEL---LREFEEKAPS--TKKKVAVIGAGPAGLACASELAKKGHEVTVFEALHKPG 178 (462)
T ss_pred CCCCEECCCHHHHHHHHCCCCCEEEEE---ECCCCCCCCC--CCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 588200020110132220147703421---0015456788--88779998468214688999974798699997148998
Q ss_pred -------CCCCCCCCCC----CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------3322111121----12235544332222311211486433344444333142032100000112222111232
Q gi|254780283|r 179 -------SSLRSEKILQ----EKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIG 247 (321)
Q Consensus 179 -------~~l~~~~~~~----~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G 247 (321)
|++|-++..+ ++| +.-+|++.++.-|-+ . +++. .-..++-+|.||+++|
T Consensus 179 GV~~YGIPefRLpKei~~~E~k~L-kklGv~fr~~~lvGk----t-----------~TL~----eL~~~YGfDAVFIgtG 238 (462)
T TIGR01316 179 GVLAYGIPEFRLPKEIVETEVKKL-KKLGVKFRTDYLVGK----T-----------VTLE----ELLEKYGFDAVFIGTG 238 (462)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHH-HHCCEEEEECCEECC----C-----------HHHH----HHHHHCCCCEEEEEEC
T ss_conf 567536888548757889888876-326637994437505----1-----------1288----8887519707999506
Q ss_pred CC-CC
Q ss_conf 23-56
Q gi|254780283|r 248 YK-PN 251 (321)
Q Consensus 248 ~~-pn 251 (321)
.= |.
T Consensus 239 AG~pk 243 (462)
T TIGR01316 239 AGLPK 243 (462)
T ss_pred CCCCE
T ss_conf 89870
No 289
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase; InterPro: IPR011295 This entry represents the FAD-dependent monooxygenase responsible for the second hydroxylation step in the aerobic ubiquinone biosynthetic pathway . The sequences in this entry are restricted to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyses the final hydroxylation step. The enzyme has also been named VisB due to a mutant visible light sensitive phenotype..
Probab=97.87 E-value=4.5e-05 Score=48.20 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=31.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCC-----CCEEEEECCCCC
Q ss_conf 1999989777999999999869-----959999678877
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAM-----LKPVIIAGSDLG 40 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g-----~~v~iie~~~~G 40 (321)
||+|||||+.|++-|+-|.+.+ .++.|||+..++
T Consensus 1 D~iIvGGGl~G~~lAlAL~~~~G~~~~~~i~l~E~~~~~ 39 (425)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLSGREGKLKIALIEANSPS 39 (425)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
T ss_conf 978885658999999998506775576158986565744
No 290
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.87 E-value=5.4e-06 Score=53.59 Aligned_cols=174 Identities=19% Similarity=0.154 Sum_probs=90.1
Q ss_pred CCCCEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCC-CCCCCCCC-CHHHHHHHHHHHHHHCCCCC
Q ss_conf 7675199998977-799999999986995999967887756875010078-77477778-97899986643232002322
Q gi|254780283|r 3 SHDSKILIIGSGP-AGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIEN-YPGFATSI-RGDWLMEQMRQQAENFGTKI 79 (321)
Q Consensus 3 ~~~~dVvIIG~Gp-AGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n-~~g~~~~~-~~~~l~~~~~~~~~~~~v~~ 79 (321)
.+.++.+++|.+| +++..|-+|-.-+. +.... -+++| +|.|-.-+ .+. ....++.-.+.+...-
T Consensus 3 ~~~~~e~~~~~~~~~a~~~a~rCl~C~~----~C~~~--------cp~~~~IP~~~~lv~~g~-~~~a~~~i~~tn~~p~ 69 (457)
T COG0493 3 PKDFREAVVGSGPEAAIYEAARCLDCGD----PCITG--------CPVHNDIPEPIGLVREGV-DHEAIKLIHKTNNLPA 69 (457)
T ss_pred CCCCEEEECCCCHHHHHHHHHHHHCCCC----HHHHC--------CCCCCCCCCHHHHHHCCC-CHHHHHHHHHHCCCCC
T ss_conf 5454456648897999999999872995----35407--------878765777888876488-2899999986088743
Q ss_pred CCEEEEECC--CCCCCCCCCCCCCCCCCCCEECCCCCCC-CEEEEECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 211332011--2222222222222222100001477664-2024652774332021012111111111221000010255
Q gi|254780283|r 80 IQDLVVSVD--LDRHPFLVETQSGDLWHADAVVIATGSE-VKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGN 156 (321)
Q Consensus 80 ~~~~V~~i~--~~~~~~~v~~~~g~~~~a~~lIiAtG~~-~~~~~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~ 156 (321)
..++|.-.. .+.. .+...++..+.++.|..+.|.. .+...+|+... ....+++|+|||+|+
T Consensus 70 ~~gRvcp~~~~ceg~--cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~--------------~~~tg~~VaviGaGP 133 (457)
T COG0493 70 ITGRVCPLGNLCEGA--CVLGIEELPVNIGALERAIGDKADREGWIPGELP--------------GSRTGKKVAVIGAGP 133 (457)
T ss_pred CCCCCCCCCCCEEEE--CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--------------CCCCCCEEEEECCCC
T ss_conf 106306899844641--3446677761132467555027898489788788--------------887676799988895
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCC-----------CCCCCCCC---CCCCCCCCCCCCCCE
Q ss_conf 65431012101333222344343322-----------11112112---235544332222311
Q gi|254780283|r 157 TAAEEALHLAKIARRVTIVHRRSSLR-----------SEKILQEK---LFLQSNIDFLFDTEV 205 (321)
Q Consensus 157 ~g~e~A~~L~~~~~~Vtli~r~~~l~-----------~~~~~~~~---~~~~~~i~~~~~~~v 205 (321)
.|+.+|..|++.+.+|+++.+.+... .++...++ ++.+.+++++.+..+
T Consensus 134 AGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~v 196 (457)
T COG0493 134 AGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRV 196 (457)
T ss_pred HHHHCHHHHHHCCCEEEECCCCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHCCCEEEECCEE
T ss_conf 155588999868987998266677744798148446464206899999998749099986677
No 291
>pfam07992 Pyr_redox_2 Pyridine nucleotide-disulphide oxidoreductase. This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain.
Probab=97.85 E-value=8.9e-05 Score=46.49 Aligned_cols=92 Identities=25% Similarity=0.380 Sum_probs=56.9
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC-----CCCCC-------------CCCCCCCCCCCCCCCCEEECC
Q ss_conf 000010255654310121013332223443433221-----11121-------------122355443322223112114
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS-----EKILQ-------------EKLFLQSNIDFLFDTEVVDVI 209 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~-----~~~~~-------------~~~~~~~~i~~~~~~~v~~i~ 209 (321)
.|+|||+|+.|+.+|..|++.+.+|++|.+.+.... +.... .+...+.+++++.++.++++.
T Consensus 1 DVvIIGgG~AGl~aA~~l~~~g~~v~lid~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~ 80 (277)
T pfam07992 1 DVVIIGGGPAGLAAAIYLARLGLKVALIEKEGGTCYNRGCIPKKLLLEAAEVGKLDLRPLEQYKDEGIEVLLGTGVTAID 80 (277)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEE
T ss_conf 99999976999999999984999799993799935755774771164543314561899999987597999687799997
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 86433344444333142032100000112222111232235656
Q gi|254780283|r 210 GSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTK 253 (321)
Q Consensus 210 g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~ 253 (321)
.+.. .+.+. +..++.+|++++|+|.+|+..
T Consensus 81 ~~~~---------~v~~~-----~g~~~~~d~lviAtG~~~~~~ 110 (277)
T pfam07992 81 KAGK---------KVTLD-----DGKELTYDKLVIATGARPRRP 110 (277)
T ss_pred CCCC---------EEEEC-----CCCEEECCEEEECCCCCCCCC
T ss_conf 8999---------89987-----893998599999879986225
No 292
>KOG4254 consensus
Probab=97.85 E-value=2e-05 Score=50.33 Aligned_cols=41 Identities=32% Similarity=0.477 Sum_probs=36.2
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC-CCCCE
Q ss_conf 876751999989777999999999869959999678-87756
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQ 42 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~-~~GG~ 42 (321)
++.+||++|||+|.-||.||-+|+|.+.+|+++|+. ..||.
T Consensus 11 ~~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerrhv~gGa 52 (561)
T KOG4254 11 AKPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERRHVIGGA 52 (561)
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEEEEECCCC
T ss_conf 886546699658866344789997538606999986304763
No 293
>KOG2404 consensus
Probab=97.84 E-value=7e-05 Score=47.09 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=31.2
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 19999897779999999998699599996788-775
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
.|+|||+|-|||+|+..+...+-.|+|+|+.. .||
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GG 46 (477)
T KOG2404 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGG 46 (477)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 079987740323567778744875999824677677
No 294
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.84 E-value=0.0001 Score=46.15 Aligned_cols=93 Identities=25% Similarity=0.325 Sum_probs=54.2
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCCCCCCCC--CCCCC---------C-----CCCCCCC---CCCCCCCCCCCCCEEEC
Q ss_conf 0000102556543101210133322234434--33221---------1-----1121122---35544332222311211
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRR--SSLRS---------E-----KILQEKL---FLQSNIDFLFDTEVVDV 208 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~--~~l~~---------~-----~~~~~~~---~~~~~i~~~~~~~v~~i 208 (321)
.|+|||||+.|+-.|.+.+|.+-++.++..+ .++.. - +.+.+++ .++.+++++....+.++
T Consensus 214 DviIIGgGPAGlsAAIYaaR~gl~t~vi~~~~GGqv~~t~~IeNypG~~~i~G~eL~~~~~~qa~~~gv~~~~~~~v~~i 293 (515)
T TIGR03140 214 DVLVVGGGPAGAAAAIYAARKGLRTAMVAERIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLMENQRAKKI 293 (515)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCEECCCEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEECCEEEEE
T ss_conf 88998967899999999997799769992487753130346004489877757999999999999749689913369999
Q ss_pred CCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 48643334444433314203210000011222211123223565
Q gi|254780283|r 209 IGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNT 252 (321)
Q Consensus 209 ~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~ 252 (321)
..... ...+.. .+| ..+.+..||+|+|.+|+.
T Consensus 294 ~~~~~-------~~~v~~---~~g--~~~~aktVIiATGa~~r~ 325 (515)
T TIGR03140 294 ETEDG-------LIVVTL---ESG--EVLKAKSVIVATGARWRK 325 (515)
T ss_pred ECCCC-------CEEEEE---CCC--CEEEECEEEECCCCCCCC
T ss_conf 72798-------189998---799--899939799956987355
No 295
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit; InterPro: IPR011280 This entry represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes..
Probab=97.84 E-value=7.7e-05 Score=46.87 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=26.0
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 9999897779999999998699599996
Q gi|254780283|r 8 ILIIGSGPAGYTAAIYAARAMLKPVIIA 35 (321)
Q Consensus 8 VvIIG~GpAGl~aA~~l~r~g~~v~iie 35 (321)
|+|||+|-||++||+.++..|.+|..|.
T Consensus 1 viVVGtGLaG~~A~~~lae~G~~V~~F~ 28 (620)
T TIGR01811 1 VIVVGTGLAGGSAAAKLAELGYHVKLFS 28 (620)
T ss_pred CEEECCCHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9685565347899999986488512544
No 296
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase; InterPro: IPR006322 These sequences represent one of two closely related subfamilies of glutathione reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione reductases of animals, yeast, and a number of animal-resident bacteria. ; GO: 0004362 glutathione-disulfide reductase activity, 0050660 FAD binding, 0050661 NADP binding, 0006749 glutathione metabolic process.
Probab=97.83 E-value=5.9e-05 Score=47.55 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=70.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-EE
Q ss_conf 51999989777999999999869959999678877568750100787747777897899986643232002322211-33
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD-LV 84 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V 84 (321)
.+|+|||||+-+..-|=-|--+|.++-|+=|++. .+. +|. +-+.+.+.++.++.|++++.. .+
T Consensus 182 ~~~v~vGAGYIAvELAGvLh~LG~~T~L~~R~d~--------vLR---~FD-----~~i~~~~~~~~~~~G~~vh~~~~~ 245 (475)
T TIGR01421 182 KRVVIVGAGYIAVELAGVLHGLGSKTHLVIRHDR--------VLR---SFD-----SMISEKVVEEYEKEGLEVHKLSKP 245 (475)
T ss_pred CEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCC--------CCC---CHH-----HHHHHHHHHHHHHCCCCCCCCCEE
T ss_conf 7179990738988888887312640225773673--------667---401-----466426689999679602156604
Q ss_pred EECCCCCCC--CCCCCCCC--------CCCCCCEECCCCCCCCEEEE
Q ss_conf 201122222--22222222--------22210000147766420246
Q gi|254780283|r 85 VSVDLDRHP--FLVETQSG--------DLWHADAVVIATGSEVKWLR 121 (321)
Q Consensus 85 ~~i~~~~~~--~~v~~~~g--------~~~~a~~lIiAtG~~~~~~~ 121 (321)
.+|.++-+. ..+..+++ +..+.|.||+|||=+|+..+
T Consensus 246 ~kveKt~~~d~~~i~~~~~PGrlPvm~~~~~~d~liwa~GR~Pn~~~ 292 (475)
T TIGR01421 246 VKVEKTVEGDKLVIHFEDGPGRLPVMKEIDDVDELIWAIGRKPNTKG 292 (475)
T ss_pred EEEEECCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 79984157864799996688865310234305678740588567355
No 297
>KOG1276 consensus
Probab=97.80 E-value=4.5e-05 Score=48.23 Aligned_cols=43 Identities=26% Similarity=0.398 Sum_probs=35.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCE--EEEECC-CCCCEEEE
Q ss_conf 76751999989777999999999869959--999678-87756875
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKP--VIIAGS-DLGGQLMI 45 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v--~iie~~-~~GG~l~~ 45 (321)
+...+|+|+|||.+||++|++|+|++.++ +|+|+. +.||-+..
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred EECCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCEEEE
T ss_conf 2066699988853688999999854899559998427866652563
No 298
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.78 E-value=0.00015 Score=45.15 Aligned_cols=96 Identities=16% Similarity=0.211 Sum_probs=58.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 6751999989777999999999869959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
+.++|+|||||.+++..|.+|++.+.+|+|+.+.+. |.. .+.+.+++.+ +-+++++.+
T Consensus 142 ~gK~V~VIGGG~~A~EeA~~Ls~~askVtII~r~d~---------------f~a---~~~~~e~~~~---~~kI~v~~nt 200 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPD---------------FTC---AKLIAEKVKN---HPKIEVKFNT 200 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCC---------------CCC---CHHHHHHHHH---CCCEEEEECC
T ss_conf 798699983888999999999974890899997875---------------685---8999999985---7985999788
Q ss_pred EEEECCCCCCCCCCC---CCCCCC--CCC------CEECCCCCCCCEEE
Q ss_conf 332011222222222---222222--210------00014776642024
Q gi|254780283|r 83 LVVSVDLDRHPFLVE---TQSGDL--WHA------DAVVIATGSEVKWL 120 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~---~~~g~~--~~a------~~lIiAtG~~~~~~ 120 (321)
.+..+..+...-.+. ..+|+. +.. +-|+++.|..|+.-
T Consensus 201 ~v~ei~G~~~v~~~~~~n~~tGe~~~~~~~~~~~t~GVFVaiG~~PnTe 249 (555)
T TIGR03143 201 ELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSE 249 (555)
T ss_pred EEEEEECCCCEEEEEEEECCCCCEEEEECCCCCCCEEEEEEECCCCCCH
T ss_conf 8999986785489999998889789960465667628999979965415
No 299
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.72 E-value=3.7e-05 Score=48.70 Aligned_cols=36 Identities=36% Similarity=0.561 Sum_probs=31.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCE
Q ss_conf 519999897779999999998699599996788-7756
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQ 42 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~ 42 (321)
-+|+|||+|.+|||||+.|.+ .++|+|||.++ .||.
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~-rhdVTLfEA~~rlGGh 45 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSR-RHDVTLFEADRRLGGH 45 (447)
T ss_pred CCEEEECCCCHHHHHHHHHHC-CCCEEEEECCCCCCCC
T ss_conf 616897256201445775323-5524788606624675
No 300
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.70 E-value=5.2e-05 Score=47.85 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=31.0
Q ss_pred CCC-CCCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCC
Q ss_conf 987-67519999897779999999998699--599996788
Q gi|254780283|r 1 MAS-HDSKILIIGSGPAGYTAAIYAARAML--KPVIIAGSD 38 (321)
Q Consensus 1 M~~-~~~dVvIIG~GpAGl~aA~~l~r~g~--~v~iie~~~ 38 (321)
|+. .++||++||||.-|-+-+..|.+... ++.|+||-+
T Consensus 1 ~~~~~~~DVvLIGaGIMsaTL~~lL~el~P~~~I~l~Erl~ 41 (497)
T PRK13339 1 MAKSESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLD 41 (497)
T ss_pred CCCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 99777778899895288999999999769987489998147
No 301
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.67 E-value=0.00011 Score=46.01 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=28.1
Q ss_pred CCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCC
Q ss_conf 221000010255654310121013332223443433
Q gi|254780283|r 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180 (321)
Q Consensus 145 ~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~ 180 (321)
.||+|+|||+|+.|+-+|..++++|.+|++|++.+.
T Consensus 16 ~gkkV~IIGaGPaGlsAA~~aa~~G~~v~viEk~~~ 51 (350)
T PRK12770 16 TGKKVAIIGAGPAGLAAAGYLACLGHEVHVYDKLPE 51 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 979899999558899999999978998599953696
No 302
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.66 E-value=6.9e-05 Score=47.15 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=33.0
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 876751999989777999999999869959999678
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
...+||++|||+|+||-..|.+|+..+++|+|+|..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG 39 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAG 39 (542)
T ss_pred CCCCCCEEEECCCCHHHHHHHHHHCCCCEEEEEECC
T ss_conf 568899899898713689999985799828999578
No 303
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.63 E-value=2.7e-06 Score=55.39 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=23.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CC-CEEEEECC
Q ss_conf 75199998977799999999986-99-59999678
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARA-ML-KPVIIAGS 37 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~-g~-~v~iie~~ 37 (321)
-++|+|||||--++=||..+.|. |. +|+++-+.
T Consensus 666 GK~VVVIGGGNTAMDcARTAlRl~GAe~VtvvYRR 700 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRR 700 (1012)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 99589989847999999998750788757998258
No 304
>KOG0042 consensus
Probab=97.63 E-value=2e-05 Score=50.24 Aligned_cols=40 Identities=33% Similarity=0.545 Sum_probs=36.6
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 9876751999989777999999999869959999678877
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG 40 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~G 40 (321)
++++++||+|||||..|--||+.++-+|+++.|+|+++++
T Consensus 63 ~~~~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~ 102 (680)
T KOG0042 63 KSTHEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFA 102 (680)
T ss_pred HCCCCCCEEEECCCCCCCCEEEHHHCCCCEEEEEECCCCC
T ss_conf 3477553799888866754121201145214777426645
No 305
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.61 E-value=1.1e-05 Score=51.79 Aligned_cols=93 Identities=23% Similarity=0.277 Sum_probs=55.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 7519999897779999999998699599996788-77568750100787747777897899986643232002322211-
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
..+++|||||+||++||++|+.+|.++.|+||+. +||++.....+ ||-. ..+-=-|...+.+...|-++++++.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~--FP~~--dcs~C~LaP~m~~v~~hp~i~l~Tya 199 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKT--FPTN--DCSICILAPKMVEVSNHPNIELITYA 199 (622)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHCC--CCCC--CCCHHHCCCHHHHHCCCCCEEEEEEE
T ss_conf 0535998684898999999997598089994178645047765230--7875--53232133023331258861465422
Q ss_pred EEEECCCCCCCCCCCCCCC
Q ss_conf 3320112222222222222
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSG 101 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g 101 (321)
+|..++-.-++|+|+....
T Consensus 200 eV~ev~G~vGnF~vki~kk 218 (622)
T COG1148 200 EVEEVSGSVGNFTVKIEKK 218 (622)
T ss_pred EEEEECCCCCCEEEEEECC
T ss_conf 4653035435347887306
No 306
>pfam06039 Mqo Malate:quinone oxidoreductase (Mqo). This family consists of several bacterial Malate:quinone oxidoreductase (Mqo) proteins (EC:1.1.99.16). Mqo takes part in the citric acid cycle. It oxidizes L-malate to oxaloacetate and donates electrons to ubiquinone-1 and other artificial acceptors or, via the electron transfer chain, to oxygen. NAD is not an acceptor and the natural direct acceptor for the enzyme is most likely a quinone. The enzyme is therefore called malate:quinone oxidoreductase, abbreviated to Mqo. Mqo is a peripheral membrane protein and can be released from the membrane by addition of chelators.
Probab=97.61 E-value=0.00016 Score=45.07 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=30.7
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCC
Q ss_conf 767519999897779999999998699--599996788
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAML--KPVIIAGSD 38 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~--~v~iie~~~ 38 (321)
.++|||+|||||.-|-+-+..|.+... ++.|+||-+
T Consensus 2 ~~~~DVvlIGgGImsatL~~~L~~l~p~~~I~l~Erl~ 39 (489)
T pfam06039 2 HDKVDVVLIGAGIMSATLGVLLKELEPNWSIEVFERLD 39 (489)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 96102999996288999999999759987489998147
No 307
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00048 Score=42.23 Aligned_cols=95 Identities=18% Similarity=0.331 Sum_probs=61.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 6751999989777999999999869959999678877568750100787747777897899986643232002322211-
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
+.++|+|||||.+.+..|++|.+.+.+++++=+.+. |.. .+.+.+++++.. +++++.+
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~~a~~Vtlv~r~~~---------------~ra---~~~~~~~l~~~~---~i~~~~~~ 200 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDE---------------FRA---EEILVERLKKNV---KIEVLTNT 200 (305)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHCCEEEEEECCCC---------------CCC---CHHHHHHHHHCC---CEEEEECC
T ss_conf 798499999987899999998853683999965866---------------682---799999987358---82899787
Q ss_pred EEEECCCCC-CCCCCCC--CCCCCCCCCEECCCCCCCCEE
Q ss_conf 332011222-2222222--222222100001477664202
Q gi|254780283|r 83 LVVSVDLDR-HPFLVET--QSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 83 ~V~~i~~~~-~~~~v~~--~~g~~~~a~~lIiAtG~~~~~ 119 (321)
.+..+..++ ...+++. .....+..+.++++.|..|+.
T Consensus 201 ~i~ei~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~~ 240 (305)
T COG0492 201 VVKEILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPNT 240 (305)
T ss_pred EEEEECCCCCCEEEEEECCCCEEEEEEEEEEEECCCCCCH
T ss_conf 0358716663269999357836898725799961788834
No 308
>PRK11749 putative oxidoreductase; Provisional
Probab=97.55 E-value=0.001 Score=40.36 Aligned_cols=85 Identities=25% Similarity=0.350 Sum_probs=53.9
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC-----------CCCCCC---CCCCCCCCCCCCCCCEEECC
Q ss_conf 1221000010255654310121013332223443433221-----------111211---22355443322223112114
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS-----------EKILQE---KLFLQSNIDFLFDTEVVDVI 209 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~-----------~~~~~~---~~~~~~~i~~~~~~~v~~i~ 209 (321)
..+|+|+|||+|++|+-+|.+|++.|-+|+++++.+.+.. ++..++ +.+++.++++.+++.+-+
T Consensus 138 ~~gkkVAIIGaGPAGLsAA~~Lar~G~~VtVfE~~~~~GGll~~GIP~~rlpk~v~~~ei~~i~~~GV~~~~n~~vG~-- 215 (460)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTAVGR-- 215 (460)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEECCEEECC--
T ss_conf 789989998967899999999997698479970478787557545899755447999999999853978985558566--
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8643334444433314203210000011222211123223
Q gi|254780283|r 210 GSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYK 249 (321)
Q Consensus 210 g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~ 249 (321)
. +.+.+ ..-+.|.|++++|..
T Consensus 216 --d-----------itl~~------L~~~ydAV~lAtGa~ 236 (460)
T PRK11749 216 --D-----------ITLDE------LRAEYDAVFIGTGLG 236 (460)
T ss_pred --C-----------CCHHH------HHHCCCEEEEECCCC
T ss_conf --4-----------32887------741148899944789
No 309
>KOG1335 consensus
Probab=97.53 E-value=0.00013 Score=45.46 Aligned_cols=98 Identities=16% Similarity=0.246 Sum_probs=71.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC-CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE-
Q ss_conf 75199998977799999999986995999967-8877568750100787747777897899986643232002322211-
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-SDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD- 82 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~-~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~- 82 (321)
-++.+|||+|.-||.-+.--.|+|.+|+++|- ++.||. + + .|+...++..+.+-+++|..+
T Consensus 211 Pk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~------------m----D-~Eisk~~qr~L~kQgi~F~l~t 273 (506)
T KOG1335 211 PKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGV------------M----D-GEISKAFQRVLQKQGIKFKLGT 273 (506)
T ss_pred CCEEEEECCCEEEEEHHHHHHHCCCEEEEEEEHHHHCCC------------C----C-HHHHHHHHHHHHHCCCEEEECC
T ss_conf 515799747456655466887637717999844344465------------5----8-8999999999986382367232
Q ss_pred EEEECCCCCC-CCCCCCC-----CCCCCCCCEECCCCCCCCEE
Q ss_conf 3320112222-2222222-----22222100001477664202
Q gi|254780283|r 83 LVVSVDLDRH-PFLVETQ-----SGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 83 ~V~~i~~~~~-~~~v~~~-----~g~~~~a~~lIiAtG~~~~~ 119 (321)
+|.+.+.+.+ ...++.. +.+++++|.+++|+|-+|..
T Consensus 274 kv~~a~~~~dg~v~i~ve~ak~~k~~~le~DvlLVsiGRrP~t 316 (506)
T KOG1335 274 KVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFT 316 (506)
T ss_pred EEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEECCCCCC
T ss_conf 7887510688857999975577850688842899980664454
No 310
>KOG2495 consensus
Probab=97.53 E-value=7.2e-05 Score=47.03 Aligned_cols=96 Identities=25% Similarity=0.314 Sum_probs=65.8
Q ss_pred EEEEECCCHHHHHHHHHHHH--------------CCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 19999897779999999998--------------6995999967887756875010078774777789789998664323
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAAR--------------AMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQA 72 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r--------------~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~ 72 (321)
-++|+||||-|+..|-++.- ...+++|+|..+ .+-|. | ...+.++.+++.
T Consensus 220 h~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d---------~iL~m--F-----dkrl~~yae~~f 283 (491)
T KOG2495 220 HFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD---------HILNM--F-----DKRLVEYAENQF 283 (491)
T ss_pred EEEEECCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHEEEEEECCCH---------HHHHH--H-----HHHHHHHHHHHH
T ss_conf 8999888876224567778778788998604132034898421014---------57788--8-----999999999986
Q ss_pred HHCCCCCCCE-EEEECCCCCCCCCCCCCCC--CCCCCCEECCCCCCCCEEE
Q ss_conf 2002322211-3320112222222222222--2221000014776642024
Q gi|254780283|r 73 ENFGTKIIQD-LVVSVDLDRHPFLVETQSG--DLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 73 ~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g--~~~~a~~lIiAtG~~~~~~ 120 (321)
.+.++++..+ .|..+..++ ..+.+.+| +++.|--|++|||..|+..
T Consensus 284 ~~~~I~~~~~t~Vk~V~~~~--I~~~~~~g~~~~iPYG~lVWatG~~~rp~ 332 (491)
T KOG2495 284 VRDGIDLDTGTMVKKVTEKT--IHAKTKDGEIEEIPYGLLVWATGNGPRPV 332 (491)
T ss_pred HHCCCEEECCCEEEEECCCE--EEEECCCCCEEEECCEEEEECCCCCCCHH
T ss_conf 43160343360799606718--99972788355303247995478877602
No 311
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.51 E-value=0.0011 Score=40.18 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=38.8
Q ss_pred CCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC-----------CCCCCCCC---CCCCCCCCCCCCCCCE
Q ss_conf 10000102556543101210133322234434332-----------21111211---2235544332222311
Q gi|254780283|r 147 KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL-----------RSEKILQE---KLFLQSNIDFLFDTEV 205 (321)
Q Consensus 147 k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l-----------~~~~~~~~---~~~~~~~i~~~~~~~v 205 (321)
++|+|||+|++|+-+|..|++.|-+||++++.++. |-++..++ ..+++.+|++.+|..+
T Consensus 433 gKVAVIGsGPAGLs~A~~Lar~G~~VTVfEal~~~GGvL~YGIPeFRLPK~IV~~EI~~l~~lGVef~~n~~V 505 (993)
T PRK12775 433 GKVAIVGSGPAGLAAAADLTRYGVETTVYEALHVLGGVLQYGIPSFRLPRDIIDREIQRLKDIGVKFETNKVV 505 (993)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHCCEEEECCCEE
T ss_conf 8089978378899999999977996489716888997268437776788899999999998789499838886
No 312
>TIGR01438 TGR thioredoxin and glutathione reductase; InterPro: IPR006338 This homodimeric, FAD-containing member of the pyridine nucleotide disulphide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-terminal arm of the protein is proposed to allow broad substrate specificity , .; GO: 0016654 oxidoreductase activity acting on NADH or NADPH disulfide as acceptor, 0050660 FAD binding, 0050661 NADP binding, 0006118 electron transport.
Probab=97.48 E-value=0.00043 Score=42.49 Aligned_cols=94 Identities=22% Similarity=0.249 Sum_probs=65.3
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE----
Q ss_conf 1999989777999999999869959999678877568750100787747777897899986643232002322211----
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD---- 82 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~---- 82 (321)
+-+|||||+-.|.||=.|.-.|.+|++.=|+-+ .-||. ++.+....+|+++-|+.+.+.
T Consensus 190 KTLvVGasYVALECaGFL~~~g~dV~V~VRSI~------------LrGFD-----qdca~kv~ehm~e~Gvkfk~~~~p~ 252 (513)
T TIGR01438 190 KTLVVGASYVALECAGFLAALGLDVTVLVRSIL------------LRGFD-----QDCAVKVKEHMKEQGVKFKEQVVPK 252 (513)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEE------------CCCCC-----HHHHHHHHHHHHCCCEEEEEEEEEE
T ss_conf 657877614235778898633996499998852------------34757-----7899999988640896887014678
Q ss_pred EEEECCC-CCCCCC--CCCCCCC----CCCCCEECCCCCCCC
Q ss_conf 3320112-222222--2222222----221000014776642
Q gi|254780283|r 83 LVVSVDL-DRHPFL--VETQSGD----LWHADAVVIATGSEV 117 (321)
Q Consensus 83 ~V~~i~~-~~~~~~--v~~~~g~----~~~a~~lIiAtG~~~ 117 (321)
+|+.++. +.++++ ++..|.. .-+||.||+|.|-.+
T Consensus 253 kve~~~~GtPGrlk~~v~ftD~~G~~~~eeYdTVl~AiGR~~ 294 (513)
T TIGR01438 253 KVEKVDSGTPGRLKVLVKFTDKDGNTIEEEYDTVLYAIGRKA 294 (513)
T ss_pred EEEEECCCCCCEEEEEEEEECCCCCCCCCCCCEEEEEECCCC
T ss_conf 766515889951789999845788744423011566625876
No 313
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.44 E-value=7.2e-06 Score=52.88 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=25.3
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC-CC-CEEEEECC
Q ss_conf 75199998977799999999986-99-59999678
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARA-ML-KPVIIAGS 37 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~-g~-~v~iie~~ 37 (321)
.++|+|||||--++=||..+.|. |. +|+++-+.
T Consensus 679 GK~VVVIGGGNTAMDcARTAlRl~GAe~VtivYRR 713 (1032)
T PRK09853 679 GKHVVVVGAGNTAMDCARAALRVPGVEKVTVVYRR 713 (1032)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 99389989847999999998750688658996058
No 314
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=97.42 E-value=0.00026 Score=43.76 Aligned_cols=101 Identities=22% Similarity=0.223 Sum_probs=68.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 67519999897779999999998699599996788775687501007877477778978999866432320023222113
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDL 83 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~ 83 (321)
...+-+|||||-=||.||.-|...|.++.++.=.+. ++- .. ..-.+.++ ++..+++.+++++.+.
T Consensus 144 ~~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~---lMe-rQ--------LD~~ag~l---L~~~le~~Gi~~~l~~ 208 (793)
T COG1251 144 NKKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT---LME-RQ--------LDRTAGRL---LRRKLEDLGIKVLLEK 208 (793)
T ss_pred CCCCCEEECCCHHHHHHHHHHHHCCCCEEEEEECCH---HHH-HH--------HHHHHHHH---HHHHHHHHCCEEECCC
T ss_conf 068858975511416788788747973489873366---889-76--------52688999---9999886060453132
Q ss_pred -EEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf -320112222222222222222100001477664202
Q gi|254780283|r 84 -VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 84 -V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
...+-.....-.+..++|..+.++-+++|+|.+|+.
T Consensus 209 ~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ 245 (793)
T COG1251 209 NTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPND 245 (793)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCEEEEEECCCCCCC
T ss_conf 0245645764036760568734420699962304661
No 315
>TIGR02730 carot_isom carotene isomerase; InterPro: IPR014101 Members of this family, including sll0033 (crtH) of Synechocystis sp. (strain PCC 6803), catalyse a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization..
Probab=97.37 E-value=0.00019 Score=44.59 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=33.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCC
Q ss_conf 519999897779999999998699599996788-775
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG 41 (321)
||++|||+|.+||-+|-+|+.+|.+++++|+-= +||
T Consensus 1 yDaiVIGSGIGGLVtAtQLa~KGakvLVLE~Y~IPGG 37 (506)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAAKGAKVLVLERYLIPGG 37 (506)
T ss_pred CCEEEEECCCHHHHHHHHHHHCCCEEEEEEEEECCCC
T ss_conf 9478981683178999999854622553220114788
No 316
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.30 E-value=0.00016 Score=44.93 Aligned_cols=165 Identities=21% Similarity=0.275 Sum_probs=87.1
Q ss_pred CCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC---------CCCC----CCCCCC------------------
Q ss_conf 221000010255654310121013332223443433221---------1112----112235------------------
Q gi|254780283|r 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS---------EKIL----QEKLFL------------------ 193 (321)
Q Consensus 145 ~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~---------~~~~----~~~~~~------------------ 193 (321)
....|+|||+|++|+-+|.+|++.+.+|.+++|+-.+.. ++.. ...+++
T Consensus 24 ~e~DVvIVGaGpsGLtAAy~LAk~g~Kv~i~E~~ls~GGG~WgGGmlf~~iVv~~~a~~iLde~gi~y~~~~~g~~v~d~ 103 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGIWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADS 103 (257)
T ss_pred HHCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCHHHHCCHHHHCCHHHHHHHHCCCCCEECCCCEEEECH
T ss_conf 40688998888279999999986896599997134688863130001334540053799999849973335896399508
Q ss_pred ------------CCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEC-CCCC--C---CCCCCCCCCCCCCCCCCCCH-HH
Q ss_conf ------------5443322223112114864333444443331420-3210--0---00011222211123223565-67
Q gi|254780283|r 194 ------------QSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLH-NKKE--G---NFFERNVDGIFIAIGYKPNT-KI 254 (321)
Q Consensus 194 ------------~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~-~~~~--g---~~~~i~~D~vi~a~G~~pn~-~~ 254 (321)
+.|++++-...+..+. .....++.|+.+. .... + ....+++..|+=++|-..+. ..
T Consensus 104 ~~~~s~L~~~a~~aGakifn~~~VEDli-----~r~~~rV~GvV~NWt~V~~~glhvDP~~i~ak~VvdaTGHda~v~~~ 178 (257)
T PRK04176 104 VEAAAKLAAGAIDAGAKIFNGVSVEDVI-----IREDGRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSV 178 (257)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEE-----EECCCCEEEEEECCHHHHHHCCCCCCCEECCCEEEECCCCCHHHHHH
T ss_conf 9999999999974798898230442156-----61288178999625775640355585201136899888986089999
Q ss_pred HHC-C----CCEE-------CCCCEEEECCCCCCCCCCEEEECCCCC---CCHH--HHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 742-5----6180-------699799008885547898289701268---8445--6789999-799999999999974
Q gi|254780283|r 255 FRH-Q----LKMT-------NTNYIWTMPDSTATSIPGIFAAGDVAD---ERYR--QAITAAA-MGCMAALEVEHYLSI 315 (321)
Q Consensus 255 ~~~-~----~~~~-------~~g~i~~~~~~~~Ts~p~Iya~GDv~~---~~~~--~~~~A~~-~G~~Aa~~i~~yl~~ 315 (321)
+.. . +... +.+--.+++.+.+ =+||+|++|=-++ +..| .+.-+|- +|+.||..|.+.|..
T Consensus 179 ~~kr~~~~~~~v~Ge~~m~~~~aE~~vV~~T~e-V~PGL~v~GMa~~~v~G~pRMGPiFGgMllSG~kaAe~i~~~L~~ 256 (257)
T PRK04176 179 LARKGPELGIEVPGEKSMWAEEGEKLVVENTGE-VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKE 256 (257)
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCC-CCCCEEEECHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998567756664886640255667899851055-347779851104642398766715777887449999999999730
No 317
>KOG0399 consensus
Probab=97.29 E-value=3.5e-05 Score=48.88 Aligned_cols=64 Identities=28% Similarity=0.445 Sum_probs=48.1
Q ss_pred CCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC-----------CCCCCC---CCCCCCCCCCCCCCCEE
Q ss_conf 11221000010255654310121013332223443433221-----------111211---22355443322223112
Q gi|254780283|r 143 FYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS-----------EKILQE---KLFLQSNIDFLFDTEVV 206 (321)
Q Consensus 143 ~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~-----------~~~~~~---~~~~~~~i~~~~~~~v~ 206 (321)
+..||+|+|||+|++|+-+|..|.+.|..|++.+|.++... ++..++ .++..++|+|+.|+++-
T Consensus 1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eig 1859 (2142)
T KOG0399 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIG 1859 (2142)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCC
T ss_conf 246847999746841466899986447679999715776745661687521327999999999886185488503225
No 318
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.27 E-value=0.00064 Score=41.49 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=32.8
Q ss_pred CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 2322211-3320112222222222222222100001477664
Q gi|254780283|r 76 GTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 76 ~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
++.++.+ .|+.+..+++.+++.+.++.++++|.||+|+|..
T Consensus 148 g~~~~~~~~V~~i~~~g~~~~v~~~~g~~~~ad~vV~AaG~~ 189 (381)
T TIGR03197 148 RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQ 189 (381)
T ss_pred CCEEEECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCCC
T ss_conf 978993625899999599899998999889735589855420
No 319
>KOG1346 consensus
Probab=97.24 E-value=0.00036 Score=42.92 Aligned_cols=99 Identities=23% Similarity=0.292 Sum_probs=64.0
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCCE-EEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCC
Q ss_conf 75199998977799999999986----9959-999678877568750100787747777897899986643232002322
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARA----MLKP-VIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKI 79 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~----g~~v-~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~ 79 (321)
+..|-|||+|.-|-..|..++|. |.+| -+|+.+. ++..| .|+.++ .+-++. ..+-|+++
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~------nm~ki-----LPeyls-~wt~ek----ir~~GV~V 410 (659)
T KOG1346 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY------NMEKI-----LPEYLS-QWTIEK----IRKGGVDV 410 (659)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC------CHHHH-----HHHHHH-HHHHHH----HHHCCCEE
T ss_conf 225899757501456787887766206848998400128------76665-----178887-888999----98569412
Q ss_pred CCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE
Q ss_conf 211-3320112222222222222222100001477664202
Q gi|254780283|r 80 IQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119 (321)
Q Consensus 80 ~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~ 119 (321)
+.+ .|.++......+.+++++|++++.|.+++|+|..|+.
T Consensus 411 ~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ 451 (659)
T KOG1346 411 RPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNS 451 (659)
T ss_pred CCCHHHHHHHHCCCCEEEEECCCCEEEECEEEEEECCCCCH
T ss_conf 54102466652021268992588764513599983578864
No 320
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.23 E-value=0.00083 Score=40.85 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=29.7
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCC
Q ss_conf 98767519999897779999999998699--599996788
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAML--KPVIIAGSD 38 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~--~v~iie~~~ 38 (321)
+.+.++||++||||.-+-+-+..|.+... +++++|+-+
T Consensus 5 ~~~~~~DvvLIGaGIMSaTLg~lL~el~P~~~I~i~Erl~ 44 (499)
T PRK05257 5 SEESKTDVVLIGAGIMSATLGTLLKELEPEWSITMFERLD 44 (499)
T ss_pred CCCCCCCEEEECCHHHHHHHHHHHHHCCCCCEEEEEEECC
T ss_conf 7888666899995288999999999709987489999246
No 321
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6; InterPro: IPR000689 Ubiquinone (Q) functions as an electron carrier in the respiratory chain in mitochondria. Q biosynthesis involves a series of enzymatic steps, which are catalysed by the enzymes COQ1-COQ8 in Saccharomyces cerevisiae. COQ6, or ubiquinone biosynthesis monooxygenase, is a flavin-dependent enzyme localised to the matrix side of the inner mitochondrial membrane that is required for one or more steps in Q biosynthesis , .; GO: 0004497 monooxygenase activity.
Probab=97.23 E-value=0.00039 Score=42.78 Aligned_cols=31 Identities=23% Similarity=0.386 Sum_probs=26.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHC----CCCEEEEEC
Q ss_conf 5199998977799999999986----995999967
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARA----MLKPVIIAG 36 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~----g~~v~iie~ 36 (321)
|||+|+||||.|++-|--|... .++|+|+|.
T Consensus 1 ~DvvIvGGG~VG~alAaaL~~~~~~~dlkv~Lld~ 35 (481)
T TIGR01989 1 FDVVIVGGGLVGLALAAALGNNPLLKDLKVLLLDA 35 (481)
T ss_pred CCEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 92898888578999999973187320230678652
No 322
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.00091 Score=40.61 Aligned_cols=31 Identities=29% Similarity=0.316 Sum_probs=28.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 5199998977799999999986995999967
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAG 36 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~ 36 (321)
.-|-|||||-||-.||++++++|..|.|+|=
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EM 34 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEM 34 (439)
T ss_pred CCEEEECCCCCCCHHHHHHHHCCCCEEEEEC
T ss_conf 7258975654451999999876983799970
No 323
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.19 E-value=0.00011 Score=45.86 Aligned_cols=12 Identities=33% Similarity=0.374 Sum_probs=5.0
Q ss_pred CCCCCCCEEEEE
Q ss_conf 556543101210
Q gi|254780283|r 155 GNTAAEEALHLA 166 (321)
Q Consensus 155 G~~g~e~A~~L~ 166 (321)
-|+|++=|..|.
T Consensus 308 mNtGi~DA~NLa 319 (554)
T PRK06183 308 MNSGIRDAANLA 319 (554)
T ss_pred CCCCHHHHHHHH
T ss_conf 556377799999
No 324
>KOG0405 consensus
Probab=97.14 E-value=0.00055 Score=41.86 Aligned_cols=102 Identities=17% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 76751999989777999999999869959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
++-++++|+|||+-++.-|--++-+|.++-|+-+.+. .+ -+|. +.+.+...++.+.-+++++..
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~k--------vL---R~FD-----~~i~~~v~~~~~~~ginvh~~ 250 (478)
T KOG0405 187 EQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEK--------VL---RGFD-----EMISDLVTEHLEGRGINVHKN 250 (478)
T ss_pred HCCCEEEEECCCEEEEEHHHHHHHCCCEEEEEEECCH--------HH---CCHH-----HHHHHHHHHHHHHCCEEECCC
T ss_conf 1685179974645887755577534870379996121--------33---0341-----888988998764045264145
Q ss_pred -EEEECCCCCCC-CCCCCCCCCCCCCCEECCCCCCCCEEE
Q ss_conf -33201122222-222222222221000014776642024
Q gi|254780283|r 83 -LVVSVDLDRHP-FLVETQSGDLWHADAVVIATGSEVKWL 120 (321)
Q Consensus 83 -~V~~i~~~~~~-~~v~~~~g~~~~a~~lIiAtG~~~~~~ 120 (321)
.++.+.+..+. +.+.+..+.....|.|++|+|-.|+..
T Consensus 251 s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk 290 (478)
T KOG0405 251 SSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTK 290 (478)
T ss_pred CCCEEEEECCCCCEEEEEECCCCCCCCEEEEEECCCCCCC
T ss_conf 5402356527872589972460403547998715787745
No 325
>TIGR02731 phytoene_desat phytoene desaturase; InterPro: IPR014102 Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme phytoene desaturase (also called phytoene dehydrogenase). This HMM does not include plant chloroplast transit peptides and the entry does not contain zeta-carotene desaturase, which is a closely related family in the same pathway..
Probab=97.09 E-value=0.00063 Score=41.52 Aligned_cols=38 Identities=37% Similarity=0.687 Sum_probs=33.8
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEE
Q ss_conf 19999897779999999998699599996788-775687
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLM 44 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~ 44 (321)
+|+|-|+|-|||+||.||.-.|+.++++|+.+ +||.+.
T Consensus 1 ~v~~aGaGlaGl~~akyl~daGh~Pi~~e~~~vlGG~va 39 (454)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVA 39 (454)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEECHHHCCCCEE
T ss_conf 957722745567788787635896268632100355023
No 326
>pfam00743 FMO-like Flavin-binding monooxygenase-like. This family includes FMO proteins and cyclohexanone monooxygenase.
Probab=97.07 E-value=0.0044 Score=36.61 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=29.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 6751999989777999999999869959999678
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
+.++|+|||+|..|.-.|.+|++...+|.+.-+.
T Consensus 182 ~GKrVlVVG~GnSg~DIA~els~~a~~V~ls~R~ 215 (532)
T pfam00743 182 QGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRT 215 (532)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEEC
T ss_conf 9974999788898410599998527868999706
No 327
>PRK06126 hypothetical protein; Provisional
Probab=97.02 E-value=0.00012 Score=45.75 Aligned_cols=10 Identities=50% Similarity=0.750 Sum_probs=5.3
Q ss_pred CCEEEECCCC
Q ss_conf 9828970126
Q gi|254780283|r 279 PGIFAAGDVA 288 (321)
Q Consensus 279 p~Iya~GDv~ 288 (321)
.+||.+||.+
T Consensus 303 gRVfLaGDAA 312 (545)
T PRK06126 303 GRVFLAGDAA 312 (545)
T ss_pred CCEEEECCCC
T ss_conf 9689701300
No 328
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=96.99 E-value=0.00067 Score=41.36 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=35.4
Q ss_pred CCCCCCCCEEEECCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q ss_conf 855478982897012688-4456789999799999999999974-22
Q gi|254780283|r 273 STATSIPGIFAAGDVADE-RYRQAITAAAMGCMAALEVEHYLSI-HQ 317 (321)
Q Consensus 273 ~~~Ts~p~Iya~GDv~~~-~~~~~~~A~~~G~~Aa~~i~~yl~~-~~ 317 (321)
+.+|.|.|+|++|||++. |++-=+-+-.||++||.++.||+-. |+
T Consensus 437 NRMTTVeGLF~~gD~vGa~pHkFSSGSftEGR~AaKaavr~ildG~k 483 (651)
T TIGR02061 437 NRMTTVEGLFAIGDAVGASPHKFSSGSFTEGRLAAKAAVRYILDGKK 483 (651)
T ss_pred CCCCCCHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 54212014653013468888667766415788999999777533678
No 329
>KOG2960 consensus
Probab=96.96 E-value=0.00018 Score=44.68 Aligned_cols=38 Identities=42% Similarity=0.635 Sum_probs=30.5
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC--CCCEEEEECC-CCCCE
Q ss_conf 75199998977799999999986--9959999678-87756
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARA--MLKPVIIAGS-DLGGQ 42 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~--g~~v~iie~~-~~GG~ 42 (321)
+.||+|+|+|.|||+||++.++. .+++.++|.+ .+||.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGG 116 (328)
T KOG2960 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGG 116 (328)
T ss_pred CCCEEEECCCCCCCCEEEEEECCCCCCEEEEEEEEECCCCC
T ss_conf 04569987786654146663036998469999700369974
No 330
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase; InterPro: IPR014103 Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyses multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulphur bacterium Chlorobium tepidum..
Probab=96.92 E-value=0.0014 Score=39.60 Aligned_cols=38 Identities=29% Similarity=0.441 Sum_probs=33.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCEEE
Q ss_conf 19999897779999999998699599996788-775687
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLM 44 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~l~ 44 (321)
+|+|||+|-|||++|++|.-.|+++-++|... .||++.
T Consensus 1 ~vaivG~GlaGl~~av~l~d~G~~v~~ye~r~f~GGkvG 39 (474)
T TIGR02732 1 KVAIVGAGLAGLATAVELVDAGHEVEIYESRSFIGGKVG 39 (474)
T ss_pred CEEEEECCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC
T ss_conf 957872567789999999738972788524332375200
No 331
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.87 E-value=0.0086 Score=34.91 Aligned_cols=109 Identities=18% Similarity=0.151 Sum_probs=59.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH----HCCCCC
Q ss_conf 6751999989777999999999869959999678877568750100787747777897899986643232----002322
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAE----NFGTKI 79 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~----~~~v~~ 79 (321)
..++|+|||||--.|-||..+.|.|.+++++=+... .+-|. ..+|+.....+=.. ..-+++
T Consensus 446 ~GK~VvVIGGGNtAMDaARTA~RlGA~VtiVYRRt~----------~EMPA-----r~EEi~hA~EEGV~F~~L~~P~e~ 510 (944)
T PRK12779 446 KGKNVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK----------SEMPA-----RVEELHHALEEGINLAVLRAPREF 510 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCH----------HHCCC-----CHHHHHHHHHCCCEEEEECCCHHH
T ss_conf 898799989956699999998852987899984587----------65898-----899998898579289981496655
Q ss_pred CC---EE-EEEC----------CCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEE---ECCCCC
Q ss_conf 21---13-3201----------1222222222222222210000147766420246---527743
Q gi|254780283|r 80 IQ---DL-VVSV----------DLDRHPFLVETQSGDLWHADAVVIATGSEVKWLR---LESEKK 127 (321)
Q Consensus 80 ~~---~~-V~~i----------~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~---ipG~~~ 127 (321)
+- +. |..+ |..++.--+-+.+...+.+|.+|+|.|..|+.+- .||++.
T Consensus 511 iGde~g~~v~~~~~~~MeLGEPDaSGRRrPvp~g~~e~i~~D~VI~AiG~~pNpli~~t~p~L~~ 575 (944)
T PRK12779 511 IGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKT 575 (944)
T ss_pred EECCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 24468977889999985358988778978877797169777999990578999510136877301
No 332
>pfam01134 GIDA Glucose inhibited division protein A.
Probab=96.85 E-value=0.00016 Score=45.02 Aligned_cols=42 Identities=29% Similarity=0.346 Sum_probs=34.6
Q ss_pred CCCCCC-CCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 885547-89828970126884456789999799999999999974
Q gi|254780283|r 272 DSTATS-IPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLSI 315 (321)
Q Consensus 272 ~~~~Ts-~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~ 315 (321)
.++||. +||+|.+|.+++... -..|+++|-+|+.|+.+++..
T Consensus 347 ~tLe~k~~~~Lf~AGQInGt~G--YeEAaaqGliAGiNaa~~~~~ 389 (391)
T pfam01134 347 PTLETKKIPGLFFAGQINGTEG--YEEAAAQGLLAGINAARKALG 389 (391)
T ss_pred CHHHHCCCCCEEECCCCCCCHH--HHHHHHHHHHHHHHHHHHHCC
T ss_conf 0354054698787662247707--999999999999999999719
No 333
>KOG2844 consensus
Probab=96.83 E-value=0.0051 Score=36.21 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=28.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC-EEEEECCC
Q ss_conf 75199998977799999999986995-99996788
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLK-PVIIAGSD 38 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~-v~iie~~~ 38 (321)
..||+|||||-+|.++|+-|++.|.+ .++.|+.+
T Consensus 39 ~A~vvViggG~~g~~~~yhlak~g~k~avlle~~~ 73 (856)
T KOG2844 39 TADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSR 73 (856)
T ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf 65579985785047899999971465247876411
No 334
>TIGR02061 aprA adenylylsulfate reductase, alpha subunit; InterPro: IPR011803 During dissimilatory sulphate reduction or sulphur oxidation, adenylylsulphate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulphite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. This entry describes the alpha subunit of APS reductase, which shares a common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins..
Probab=96.77 E-value=0.00048 Score=42.21 Aligned_cols=32 Identities=38% Similarity=0.494 Sum_probs=28.9
Q ss_pred EEEEECCCHHHHHHHHHHHH----CCCCEEEEECCC
Q ss_conf 19999897779999999998----699599996788
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAAR----AMLKPVIIAGSD 38 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r----~g~~v~iie~~~ 38 (321)
||+|||||.+|.=||+++.+ .|+|++|+||..
T Consensus 1 D~LivGgG~ggcGaAfEA~yWg~~~GLKi~lveKA~ 36 (651)
T TIGR02061 1 DVLIVGGGLGGCGAAFEAAYWGKKKGLKIVLVEKAA 36 (651)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 947871785520278999987406883799961146
No 335
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.75 E-value=0.0031 Score=37.51 Aligned_cols=35 Identities=20% Similarity=0.343 Sum_probs=32.0
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 76751999989777999999999869959999678
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
.++++|+|+|.|-+|+++|..|.+.|.++.+.|.+
T Consensus 5 ~~~k~vlV~GlG~sG~a~a~~L~~~G~~V~~~D~~ 39 (501)
T PRK02006 5 RQRPMVLVLGLGESGLAMARWCARHGCRLRVADTR 39 (501)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 68983999833688999999999789849999899
No 336
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.74 E-value=0.00066 Score=41.42 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=33.9
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 12210000102556543101210133322234434332
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL 181 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l 181 (321)
..+.+++|+|-|..|..+|..|..+|.+|++..|++.-
T Consensus 150 i~gs~~lVlG~Gr~G~~lA~~l~~lGA~V~V~aR~~~~ 187 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGAKVKVGARKSAH 187 (296)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHH
T ss_conf 24765899898689999999999779969999799999
No 337
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.68 E-value=0.0041 Score=36.80 Aligned_cols=38 Identities=34% Similarity=0.391 Sum_probs=34.9
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 98767519999897779999999998699599996788
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
|++++.+|+|||+|.-|..-|.+|++.|.+|+++-+++
T Consensus 1 M~~~~~kI~IiGaGAiG~~~a~~L~~aG~~V~li~r~~ 38 (313)
T PRK06249 1 MDSETPRIAIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 99998889999914999999999996699569996755
No 338
>KOG2853 consensus
Probab=96.63 E-value=0.0022 Score=38.42 Aligned_cols=36 Identities=25% Similarity=0.463 Sum_probs=30.7
Q ss_pred CCCEEEEECCCHHHHHHHHHHHH----CCCCEEEEECCCC
Q ss_conf 67519999897779999999998----6995999967887
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAAR----AMLKPVIIAGSDL 39 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r----~g~~v~iie~~~~ 39 (321)
-+.||+|||||-.|.|.|+.|+. .|++|+++|+++-
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 4367899888865226589998876437943999962675
No 339
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.56 E-value=0.0075 Score=35.27 Aligned_cols=35 Identities=11% Similarity=0.213 Sum_probs=31.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 67519999897779999999998699599996788
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
+.++|.|+|-|..|+++|.+|.+.|.++.++|...
T Consensus 13 ~~kkv~i~GlG~sG~a~a~~L~~~g~~v~~~D~~~ 47 (458)
T PRK01710 13 KNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89969999787889999999997889799998988
No 340
>PRK06847 hypothetical protein; Provisional
Probab=96.43 E-value=0.00042 Score=42.57 Aligned_cols=12 Identities=17% Similarity=0.227 Sum_probs=9.6
Q ss_pred CCCEEEECCCCC
Q ss_conf 898289701268
Q gi|254780283|r 278 IPGIFAAGDVAD 289 (321)
Q Consensus 278 ~p~Iya~GDv~~ 289 (321)
..+|+.+||.+-
T Consensus 281 ~gRv~LiGDAAH 292 (375)
T PRK06847 281 RGRVVLIGDAVH 292 (375)
T ss_pred CCCEEEEEECCC
T ss_conf 487999980112
No 341
>PRK07208 hypothetical protein; Provisional
Probab=96.43 E-value=0.00043 Score=42.49 Aligned_cols=38 Identities=16% Similarity=0.189 Sum_probs=28.2
Q ss_pred CCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 85547898289701268844567899997999999999
Q gi|254780283|r 273 STATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVE 310 (321)
Q Consensus 273 ~~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~ 310 (321)
+++.+.||||.+|=-....+..--.||.+|..||.+|.
T Consensus 415 ~L~~~~~~I~~~GR~G~~~Y~NmDhs~~~g~~aa~~i~ 452 (474)
T PRK07208 415 YLDEHFPNLHLVGRNGMHRYNNQDHAMLTAMLAVENII 452 (474)
T ss_pred HHHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 99854799899065877667847999999999999997
No 342
>pfam01262 AlaDh_PNT_C Alanine dehydrogenase/PNT, C-terminal domain. This family now also contains the lysine 2-oxoglutarate reductases.
Probab=96.35 E-value=0.0068 Score=35.52 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=28.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 7519999897779999999998699599996788
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
-.+|+|||+|-+|+.|+..+.++|.++.++|.+.
T Consensus 20 pa~vvViG~Gv~G~~A~~~A~~lGa~V~v~D~~~ 53 (150)
T pfam01262 20 PAKVVVIGGGVVGLGAAATAKGLGAPVTILDVRP 53 (150)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 7779998987899999999986799899972999
No 343
>TIGR00136 gidA glucose-inhibited division protein A; InterPro: IPR004416 Glucose-inhibited division protein A, GidA appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. The function of these proteins is unknown..
Probab=96.35 E-value=0.0041 Score=36.77 Aligned_cols=111 Identities=28% Similarity=0.369 Sum_probs=63.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEC--CCC---------CCEE--EEECCCC--------------------CC
Q ss_conf 5199998977799999999986995999967--887---------7568--7501007--------------------87
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAG--SDL---------GGQL--MITESIE--------------------NY 52 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~--~~~---------GG~l--~~~~~i~--------------------n~ 52 (321)
+|++|||+|.||+.+|+..+|.|.++.++.- +.. ||-- .....+. |.
T Consensus 1 ~~~~~~g~gh~g~e~~~~~~~~g~~~~~~~~~~~~~g~~~cnp~~gg~~~g~~~~e~d~lgg~~g~~~d~~~~~~~~ln~ 80 (630)
T TIGR00136 1 FDVIVIGGGHAGLEAALAAARLGAKTLLLTLNLDTLGKCPCNPAIGGPGKGILVKEIDALGGLMGKAADKTGLQFRLLNS 80 (630)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEEEEECHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 90688617620035677765417513455404122202556644465323410002334201466655344444443204
Q ss_pred ---CC---CCCCCCHHHHHHHHHHHHH----HCCCCCCCEEEEECCCC-----C-CCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf ---74---7777897899986643232----00232221133201122-----2-2222222222222100001477664
Q gi|254780283|r 53 ---PG---FATSIRGDWLMEQMRQQAE----NFGTKIIQDLVVSVDLD-----R-HPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 53 ---~g---~~~~~~~~~l~~~~~~~~~----~~~v~~~~~~V~~i~~~-----~-~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
|. .........+...++..++ +-++.+..+.+..+-.. + ...-+.+..|..+.++.+++.||..
T Consensus 81 ~~gp~~~~~~~~~d~~~y~~~~~~~~~~~~~~pn~~~~~~~~~~~~~~~~gcg~~~~~g~~~~~g~~~~~~~~~~~~g~~ 160 (630)
T TIGR00136 81 SKGPAVRALRAQIDKLLYRKWAKNTLENQKAHPNLSLLQGEVEDLLLEDPGCGNDEVKGVVTKDGAEFRAKAVVLTTGTF 160 (630)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCEEEEEECCC
T ss_conf 56641000245666899999999887531146533566767777764046888651246653046300023256740410
No 344
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=96.30 E-value=0.011 Score=34.18 Aligned_cols=83 Identities=19% Similarity=0.380 Sum_probs=52.4
Q ss_pred CEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCC--C--------------------
Q ss_conf 5199998977-----------799999999986995999967887756875010078--7--------------------
Q gi|254780283|r 6 SKILIIGSGP-----------AGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIEN--Y-------------------- 52 (321)
Q Consensus 6 ~dVvIIG~Gp-----------AGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n--~-------------------- 52 (321)
.+|+|||+|| +|-.|=.-|+..|.+|+|+=.+.. .+++.+.+-+ |
T Consensus 7 ~kvLviGSGPi~IGQAaEFDYSGsQAcKALkEEGy~viLVNsNpA--TimTD~~~AD~vY~ePlT~e~V~~IIEKERPDg 84 (1089)
T TIGR01369 7 KKVLVIGSGPIVIGQAAEFDYSGSQACKALKEEGYEVILVNSNPA--TIMTDPEMADKVYIEPLTPEAVEKIIEKERPDG 84 (1089)
T ss_pred CEEEEECCCCCCHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCC--CCCCCHHHCCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 789996667311312023024789999998764957999758847--233886686600252545888866653168660
Q ss_pred --CCCCCCCCHHHHHHHHHH--HHHHCCCCCCCEEEEECCCCC
Q ss_conf --747777897899986643--232002322211332011222
Q gi|254780283|r 53 --PGFATSIRGDWLMEQMRQ--QAENFGTKIIQDLVVSVDLDR 91 (321)
Q Consensus 53 --~g~~~~~~~~~l~~~~~~--~~~~~~v~~~~~~V~~i~~~~ 91 (321)
|+| .+-++-.+.=.|.+ .+++|||+++=..+..|.+..
T Consensus 85 iL~t~-GGQTALNlav~L~~~GVL~kYgV~vLGT~~eaI~kaE 126 (1089)
T TIGR01369 85 ILPTL-GGQTALNLAVELEESGVLEKYGVEVLGTPVEAIKKAE 126 (1089)
T ss_pred HHCCC-CCHHHHHHHHHHHHCCCCHHHCCEEECCCHHHHHHHC
T ss_conf 00257-6035777788662068514529178523424352020
No 345
>PRK05868 hypothetical protein; Validated
Probab=96.29 E-value=0.00058 Score=41.72 Aligned_cols=13 Identities=23% Similarity=0.156 Sum_probs=10.3
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7898289701268
Q gi|254780283|r 277 SIPGIFAAGDVAD 289 (321)
Q Consensus 277 s~p~Iya~GDv~~ 289 (321)
+.-+|..+||.+.
T Consensus 280 ~~GRVvLlGDAAH 292 (372)
T PRK05868 280 SRGRVALVGDAGY 292 (372)
T ss_pred CCCCEEEEECCHH
T ss_conf 7598998651220
No 346
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.21 E-value=0.0098 Score=34.56 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=34.2
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9876751999989777999999999869959999678
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
|+=+.++|+|||-|-.|+++|.+|.+.|.++.+.|.+
T Consensus 1 m~~~~k~v~viGlG~sG~s~a~~L~~~G~~v~~~D~~ 37 (445)
T PRK04308 1 MTFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAE 37 (445)
T ss_pred CCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 9979998999998999999999999789919999799
No 347
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.017 Score=33.24 Aligned_cols=28 Identities=43% Similarity=0.629 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCCCCC
Q ss_conf 0000102556543101210133322234
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIARRVTIV 175 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~~~Vtli 175 (321)
.|+|||||+.|.-.|.+-+|-|.+.-++
T Consensus 213 DVLvVGgGPAgaaAAIYaARKGiRTGl~ 240 (520)
T COG3634 213 DVLVVGGGPAGAAAAIYAARKGIRTGLV 240 (520)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCHHHHH
T ss_conf 4999868863167899998612111001
No 348
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.19 E-value=0.016 Score=33.41 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=29.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 51999989777999999999869959999678
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
.+|+|||+|.=|..-|..|.+.|++|+++.+.
T Consensus 3 mkI~IiGaGAvG~~~a~~L~~aG~~V~lv~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECH
T ss_conf 77999896799999999998589987999567
No 349
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.19 E-value=0.0051 Score=36.25 Aligned_cols=108 Identities=16% Similarity=0.120 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHH------H-HCCCCEE--
Q ss_conf 355443322223112114864333444443331420321000001122221112322356567------7-4256180--
Q gi|254780283|r 192 FLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKI------F-RHQLKMT-- 262 (321)
Q Consensus 192 ~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~------~-~~~~~~~-- 262 (321)
+++.++.++.+..+++...+.. .++.+.. +.+....+.+|.+++|+|.=-+..+ + +.-++++
T Consensus 273 f~~~Gg~~~~g~~V~~~~~~~~------~v~~v~t---~~~~~~~~~A~~~VLATGsF~s~GL~a~~~~i~Epif~LdV~ 343 (419)
T TIGR03378 273 FEQLGGVMLPGDRVLRAEFEGN------RVTRIHT---RNHRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVL 343 (419)
T ss_pred HHHCCCEEECCCEEEEEEEECC------EEEEEEE---CCCCCEEEECCEEEECCCCCCCCCEECCCCCEEEECCCCCCC
T ss_conf 9986978966997998998799------8999993---378722650576999146654698853689765205699889
Q ss_pred ---------------CC---CCEEEECCCCCCC-----CCCEEEECCCCCCCHHHHH------HHHHHHHHHHHHH
Q ss_conf ---------------69---9799008885547-----8982897012688445678------9999799999999
Q gi|254780283|r 263 ---------------NT---NYIWTMPDSTATS-----IPGIFAAGDVADERYRQAI------TAAAMGCMAALEV 309 (321)
Q Consensus 263 ---------------~~---g~i~~~~~~~~Ts-----~p~Iya~GDv~~~~~~~~~------~A~~~G~~Aa~~i 309 (321)
.+ -+-+.+|+.++-+ ++|+||+|-+-++ +..+. .|+..|-.||.+|
T Consensus 344 ~~~~R~~W~~~~ff~~qp~~~~GV~tD~~lrp~~~g~~~~NLya~GsvL~G-~d~~~egcG~GVai~Ta~~Aa~~I 418 (419)
T TIGR03378 344 QLPDRDQWYQHRFFAPHPFMQFGVKTDAQLRPSRGGQTIENLYAIGAVLGG-YDPIFEGCGSGVAVSTALHAAEQI 418 (419)
T ss_pred CCCCHHHCCCCCCCCCCHHHHCCCEECCCCCCCCCCCCCCCEEEECHHHCC-CCHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 988756602303568880133286788777835678345650672312318-876773777339999999999964
No 350
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.19 E-value=0.0094 Score=34.68 Aligned_cols=35 Identities=23% Similarity=0.408 Sum_probs=31.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 67519999897779999999998699599996788
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
+.++|+|+|.|-.|+++|.+|.+.|.+|++.|...
T Consensus 8 ~~k~i~viGlG~sG~s~a~~L~~~G~~V~~~D~~~ 42 (450)
T PRK02472 8 QNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 42 (450)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 89989999778999999999998869899984886
No 351
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.18 E-value=0.0095 Score=34.64 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=30.1
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 675199998977799999999986995999967
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG 36 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~ 36 (321)
+.++|+|+|.|..|+++|..|.+.|.+++++|.
T Consensus 13 ~gk~v~V~GlG~sG~s~a~~L~~~G~~v~~~D~ 45 (481)
T PRK01438 13 SGLRVVVAGLGVSGFPAADALHELGASVTVVAD 45 (481)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 899899995758899999999967998999979
No 352
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.18 E-value=0.00075 Score=41.10 Aligned_cols=29 Identities=7% Similarity=0.025 Sum_probs=10.8
Q ss_pred CCCEEEEECCCHHHHHH--HHHHHHCCCCEE
Q ss_conf 67519999897779999--999998699599
Q gi|254780283|r 4 HDSKILIIGSGPAGYTA--AIYAARAMLKPV 32 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~a--A~~l~r~g~~v~ 32 (321)
+.++|.+.=.++.-... ...|...|.++.
T Consensus 36 ~G~~v~~~D~~~~~~~~~~~~~l~~~g~~~~ 66 (481)
T PRK01438 36 LGASVTVVADGDDDRSRERAALLEVLGATVR 66 (481)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCCEEE
T ss_conf 7998999979987448689998885498899
No 353
>KOG2665 consensus
Probab=96.17 E-value=0.0044 Score=36.62 Aligned_cols=37 Identities=16% Similarity=0.309 Sum_probs=32.1
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC
Q ss_conf 87675199998977799999999986--99599996788
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARA--MLKPVIIAGSD 38 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~--g~~v~iie~~~ 38 (321)
++.+||.+|||||.-|++.|.+|..+ ++++.++|++.
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~ 83 (453)
T KOG2665 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEK 83 (453)
T ss_pred CCCCCCEEEECCCEEEHHHHHHHHHCCCCCEEEEEEHHH
T ss_conf 456554799888432225567776317872577540001
No 354
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=96.13 E-value=0.0057 Score=35.93 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=56.9
Q ss_pred CCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCC------CHHHHHC-CCCEE--
Q ss_conf 35544332222311211486433344444333142032100000112222111232235------6567742-56180--
Q gi|254780283|r 192 FLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKP------NTKIFRH-QLKMT-- 262 (321)
Q Consensus 192 ~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p------n~~~~~~-~~~~~-- 262 (321)
+++.++.++.+..|+....+. ..++.+. .+.+..+++.+|.+++|+|.=- +.+-+.+ .+.++
T Consensus 272 ~~~~Gg~~~~g~~V~~~~~~~------~~v~~v~---t~~~~~~~~~A~~~VLATGsF~s~GL~a~~~~i~Epif~L~V~ 342 (425)
T PRK05329 272 FERLGGVLMPGDEVLRATCED------GRVTGIW---TRNHADIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVL 342 (425)
T ss_pred HHHCCCEEECCCEEEEEEEEC------CEEEEEE---ECCCCCEEEECCEEEEECCCCCCCCEECCCCCEEEECCCCCCC
T ss_conf 998697896699888789869------9899999---0278842761376999037766698853689256104599889
Q ss_pred ---------------CC---CCEEEECCCCCC-----CCCCEEEECCCCCCCHHHH------HHHHHHHHHHHHHHH
Q ss_conf ---------------69---979900888554-----7898289701268844567------899997999999999
Q gi|254780283|r 263 ---------------NT---NYIWTMPDSTAT-----SIPGIFAAGDVADERYRQA------ITAAAMGCMAALEVE 310 (321)
Q Consensus 263 ---------------~~---g~i~~~~~~~~T-----s~p~Iya~GDv~~~~~~~~------~~A~~~G~~Aa~~i~ 310 (321)
.+ -+-+.+|+.++- -++|+|++|-+-++ +..+ -.|+..|-.||.+|.
T Consensus 343 ~~~~R~~W~~~~ff~~hp~~~~GV~tD~~lrP~~g~~~~~NL~aaGsvL~G-~d~~~e~~G~GVAi~Ta~~Aa~~i~ 418 (425)
T PRK05329 343 QTADRAEWYDGDFFAPHPFQQFGVATDDTLRPSQGGQVIENLYAAGAVLGG-YDPIAEGCGSGVAVATALHAAEQIA 418 (425)
T ss_pred CCCCHHHCCCCCCCCCCHHHHCCCEECCCCCCCCCCCCCCCCEEECHHHCC-CCHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 998856633301357782554586778777825798534551672413328-8767737774288999999999999
No 355
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF; InterPro: IPR012731 Members of the HesA/MoeB/ThiF family of proteins (IPR000594 from INTERPRO) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees. The Escherichia coli ThiF and MoeB proteins are seemingly more closely related than the E. coli ThiF and Campylobacter (for example) ThiF. This entry represents the more widely distributed clade of ThiF proteins as found in E. coli..
Probab=96.12 E-value=0.0093 Score=34.71 Aligned_cols=35 Identities=37% Similarity=0.550 Sum_probs=30.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf 7519999897779999999998699-5999967887
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAML-KPVIIAGSDL 39 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~~~ 39 (321)
+..|+|||+|-=|-.++.+|+++|. ++.|+|.+..
T Consensus 21 ~s~VLiiGaGgLGs~~~~~LA~AGVG~i~i~D~D~V 56 (210)
T TIGR02356 21 ASHVLIIGAGGLGSPAALYLAAAGVGTITIVDDDHV 56 (210)
T ss_pred HCCEEEEEECHHHHHHHHHHHHCCCCEEEEEECCEE
T ss_conf 086599972614568999998288837899851677
No 356
>KOG3855 consensus
Probab=96.11 E-value=0.0063 Score=35.68 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=26.5
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC----CCCEEEEECC
Q ss_conf 7675199998977799999999986----9959999678
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARA----MLKPVIIAGS 37 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~----g~~v~iie~~ 37 (321)
+..|||+|+||||.|++-|-.++.. ..+++|+|..
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred CCCCCEEEECCCHHHHHHHHHHCCCCCCCHHEEEEEECC
T ss_conf 110778998884477899998624985000014677424
No 357
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.11 E-value=0.013 Score=33.83 Aligned_cols=38 Identities=32% Similarity=0.438 Sum_probs=31.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCC----CCEEEEECCC-CCC
Q ss_conf 6751999989777999999999869----9599996788-775
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAM----LKPVIIAGSD-LGG 41 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g----~~v~iie~~~-~GG 41 (321)
.+++.-|||+|.|+|+||.+|.|-+ -++.|+|+.. +||
T Consensus 21 ~~~~AyiiGsGiasLAaA~~LIrDa~~pg~~IhIlE~~~~~GG 63 (577)
T PRK13977 21 ENKKAYLIGSGLASLAAAVFLIRDGHMPGENITILEELPIPGG 63 (577)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
T ss_conf 7575899887789999999998606879652289756888997
No 358
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent; InterPro: IPR011275 This entry contains bacterial and archaeal malate dehydrogenases, which convert malate into oxaloacetate in the citric acid cycle. The critical residues which discriminate malate dehydrogenase from lactate dehydrogenase have been characterised , and have been used to determine members of this group. ; GO: 0030060 L-malate dehydrogenase activity, 0006108 malate metabolic process.
Probab=96.11 E-value=0.017 Score=33.24 Aligned_cols=90 Identities=23% Similarity=0.240 Sum_probs=50.6
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCC--CCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 751999989777999999999869--959999678877568750100787747777897899986643232002322211
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAM--LKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g--~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
.+||-|||||.-|=+.|+.|+++. .+++|+|=. .++|.| .+. ..+..+.--++..-.
T Consensus 1 RkKisvIGAGfvGaTTAf~lA~KeLard~VLlDiP----------qvEg~p---qGK--------ALDmyEasPv~gFD~ 59 (308)
T TIGR01763 1 RKKISVIGAGFVGATTAFLLAEKELARDVVLLDIP----------QVEGVP---QGK--------ALDMYEASPVEGFDV 59 (308)
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEC----------CCCCCC---CCC--------HHHHHHCCCCCCCCC
T ss_conf 95589970686125899999867406716898505----------558688---863--------322110277663112
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCC
Q ss_conf 33201122222222222222221000014776642024652774
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEK 126 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~ 126 (321)
+|++-.. + - ++=.+|-+++.+| -||+|.---.+
T Consensus 60 kvTGtnn----Y-a-----DTAnSDivViTaG-~pRKPGMsReD 92 (308)
T TIGR01763 60 KVTGTNN----Y-A-----DTANSDIVVITAG-LPRKPGMSRED 92 (308)
T ss_pred EEECCCC----C-H-----HHCCCCEEEECCC-CCCCCCCCHHH
T ss_conf 3625787----0-0-----2118837998167-88754788789
No 359
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.011 Score=34.22 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=30.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
.+|+|+|.|-.|+++|..|.+.|.+++++|.+.
T Consensus 18 ~kvlV~GlG~SG~s~a~~L~~~G~~v~~~D~~~ 50 (476)
T PRK00141 18 GRVLVAGAGVSGLGIAKMLSELGCDVVVADDNE 50 (476)
T ss_pred CCEEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 988999227889999999997899799998998
No 360
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.06 E-value=0.011 Score=34.28 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=30.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
.+|.|||.|+-||+.|.-++..|++|+.+|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 915898885568878999987098489995788
No 361
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.06 E-value=0.01 Score=34.43 Aligned_cols=53 Identities=19% Similarity=0.193 Sum_probs=36.6
Q ss_pred CCCEECCCCEEEECCCCCCCCCCEEEECCCC----CC--C-----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5618069979900888554789828970126----88--4-----4567899997999999999999
Q gi|254780283|r 258 QLKMTNTNYIWTMPDSTATSIPGIFAAGDVA----DE--R-----YRQAITAAAMGCMAALEVEHYL 313 (321)
Q Consensus 258 ~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~----~~--~-----~~~~~~A~~~G~~Aa~~i~~yl 313 (321)
++..+++..++ |... .-+||+||+|+|+ +. + ...+..++-.|++|+.++.|||
T Consensus 486 Gl~in~~~qVL--~~~G-~pI~GLYAAGE~ag~~~gg~hG~n~l~G~sl~~~~~fGRiAg~~Aak~~ 549 (549)
T PRK12834 486 GLETDLDSRVL--GADG-TPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAARAI 549 (549)
T ss_pred CEEECCCCCEE--CCCC-CEECCEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 81699998448--9998-9838807460225578896067786624438899999999999999629
No 362
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.97 E-value=0.019 Score=32.95 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=33.6
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCC
Q ss_conf 98767519999897779999999998699--599996788
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAML--KPVIIAGSD 38 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~--~v~iie~~~ 38 (321)
|.++..+|.|||+|--|-++|+.|...++ +++|+|..+
T Consensus 2 m~~k~~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiD~~~ 41 (315)
T PRK00066 2 MKKKHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 8878984999997988999999998669988899980898
No 363
>KOG2852 consensus
Probab=95.90 E-value=0.0038 Score=36.99 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=32.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCC------CCEEEEECCCC
Q ss_conf 76751999989777999999999869------95999967887
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAM------LKPVIIAGSDL 39 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g------~~v~iie~~~~ 39 (321)
.+.++|+|+|||.-|..+|++|++.. +.++|||+.+.
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I 50 (380)
T KOG2852 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI 50 (380)
T ss_pred CCCEEEEEECCCCEEEEEEHHHHCCCCCCCCCEEEEEEEECCC
T ss_conf 7830799988870466420034428766778415999960343
No 364
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.86 E-value=0.016 Score=33.37 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=30.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
++++|||+|.-|++-|..|.+.|++++++|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 989998985788999999987899089997688
No 365
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.84 E-value=0.018 Score=33.08 Aligned_cols=34 Identities=12% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 6751999989777999999999869959999678
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
+.++|.|+|.|-+|+++|..|.+.|.+|.+.|.+
T Consensus 8 ~gk~v~v~GlG~sG~s~a~~L~~~G~~V~~~D~~ 41 (457)
T PRK01390 8 KGKTVALFGLGGSGLATARALKAGGAEVIAWDDN 41 (457)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 8998999943699999999999789979999399
No 366
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.81 E-value=0.013 Score=33.91 Aligned_cols=30 Identities=30% Similarity=0.294 Sum_probs=16.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 519999897779999999998699599996
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIA 35 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie 35 (321)
-+|+|||+|-|||+|+-.+.++|..|..+|
T Consensus 166 AkVlViGaGVAGlqAi~tA~~LGA~V~a~D 195 (510)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFD 195 (510)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 528997464777999999962797899965
No 367
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.80 E-value=0.019 Score=32.86 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=30.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 6751999989777999999999869959999678
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
+.++|+|+|.|-.|+++|.+|.+.|.++.+.|.+
T Consensus 5 ~~k~v~V~GlG~sG~s~~~~L~~~G~~v~~~D~~ 38 (438)
T PRK03806 5 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTR 38 (438)
T ss_pred CCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 8998999945788899999999789969999899
No 368
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.74 E-value=0.0014 Score=39.57 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=36.4
Q ss_pred HHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 2002322211-3320112222222222222222100001477664
Q gi|254780283|r 73 ENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 73 ~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
++++.++..+ .|++|..+++.+.|.+.+|+++++|+||+|+-+.
T Consensus 230 ~~lg~~i~l~~~V~~I~~~~~~~~v~~~~g~~~~aD~VV~a~p~~ 274 (452)
T PRK11883 230 EKLPATIHKSTSVTKIDKSGDGYEITLSNGGEITADAVIVAVPHP 274 (452)
T ss_pred HHCCCEEEECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCHH
T ss_conf 865997996888889999399899998899699959899898989
No 369
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.73 E-value=0.0015 Score=39.33 Aligned_cols=11 Identities=9% Similarity=-0.082 Sum_probs=5.6
Q ss_pred HHHHHCCCCEE
Q ss_conf 99998699599
Q gi|254780283|r 22 IYAARAMLKPV 32 (321)
Q Consensus 22 ~~l~r~g~~v~ 32 (321)
.+|.+.|.++.
T Consensus 50 ~~l~~~gi~~~ 60 (450)
T PRK02472 50 QELLEEGIKVI 60 (450)
T ss_pred HHHHHCCCEEE
T ss_conf 99996799899
No 370
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.73 E-value=0.025 Score=32.24 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=27.9
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9999897779999999998699599996788
Q gi|254780283|r 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 8 VvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
-+|+|.|-+|+++|.+|.+.|.++++.|.+.
T Consensus 3 a~V~GlG~sG~s~a~~L~~~G~~v~~~D~~~ 33 (459)
T PRK02705 3 AHVIGLGRSGIAAARLLKAQGWEVVVSERND 33 (459)
T ss_pred EEEEEECHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999548999999999997899599998989
No 371
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=95.69 E-value=0.0013 Score=39.69 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=45.9
Q ss_pred CCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCC-----CCCCCCEECCCCCCCC
Q ss_conf 897899986643232002322211-3320112222222222222-----2221000014776642
Q gi|254780283|r 59 IRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSG-----DLWHADAVVIATGSEV 117 (321)
Q Consensus 59 ~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g-----~~~~a~~lIiAtG~~~ 117 (321)
.....+...+.+.+.+.|++|+.+ .|+.+..+++.+.+.+.++ .++.+|++|+|+|+..
T Consensus 194 ~dp~~~~~al~~~~~~~G~~~~~~~~V~~i~~~~~~v~v~~~~~~~~~~~~~~ad~vViAaGawS 258 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTDIKTDGDRVVLTCQDSSQGDSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred ECHHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCCCCCCCEEEEEEEEECCCCCC
T ss_conf 35899999999999977999987855899998099899996464233552588304998766663
No 372
>KOG3923 consensus
Probab=95.67 E-value=0.068 Score=29.68 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=23.4
Q ss_pred CEEEEECCCHHHHHHHHHHHHCC-------CCEEEEE
Q ss_conf 51999989777999999999869-------9599996
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAM-------LKPVIIA 35 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g-------~~v~iie 35 (321)
-+|+|||+|--||+.|+.+.+.. .++++++
T Consensus 4 ~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~ 40 (342)
T KOG3923 4 PRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVIS 40 (342)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf 6089974771015689999986541268862278745
No 373
>PRK08163 salicylate hydroxylase; Provisional
Probab=95.67 E-value=0.0017 Score=38.97 Aligned_cols=13 Identities=31% Similarity=0.202 Sum_probs=10.4
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7898289701268
Q gi|254780283|r 277 SIPGIFAAGDVAD 289 (321)
Q Consensus 277 s~p~Iya~GDv~~ 289 (321)
+..+|+.+||.+-
T Consensus 284 ~~gRv~LiGDAAH 296 (396)
T PRK08163 284 STGRATLLGDAAH 296 (396)
T ss_pred CCCCEEEEECCCC
T ss_conf 3784898504024
No 374
>KOG4716 consensus
Probab=95.64 E-value=0.015 Score=33.56 Aligned_cols=92 Identities=24% Similarity=0.303 Sum_probs=61.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE----
Q ss_conf 1999989777999999999869959999678877568750100787747777897899986643232002322211----
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD---- 82 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~---- 82 (321)
+-+|+|||+-+|.||-.|.-.|.++++.-++-+ .-||. ++.++...++.+..|+.|+..
T Consensus 200 kTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~------------LrGFD-----qdmae~v~~~m~~~Gikf~~~~vp~ 262 (503)
T KOG4716 200 KTLVVGAGYVALECAGFLKGFGYDVTVMVRSIL------------LRGFD-----QDMAELVAEHMEERGIKFLRKTVPE 262 (503)
T ss_pred CEEEECCCEEEEEHHHHHHHCCCCCEEEEEEEE------------CCCCC-----HHHHHHHHHHHHHHCCCEEECCCCE
T ss_conf 448974513454213567533888579998741------------02526-----9999999999997097334033530
Q ss_pred EEEECCCCCCCCCCC---CCCC--CCCCCCEECCCCCCCC
Q ss_conf 332011222222222---2222--2221000014776642
Q gi|254780283|r 83 LVVSVDLDRHPFLVE---TQSG--DLWHADAVVIATGSEV 117 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~---~~~g--~~~~a~~lIiAtG~~~ 117 (321)
+|..++... +.|. +..+ -+-.|+.+++|.|-.+
T Consensus 263 ~Veq~~~g~--l~v~~k~t~t~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716 263 RVEQIDDGK--LRVFYKNTNTGEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred EEEECCCCC--EEEEEECCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 102204772--79996125566444102232031224511
No 375
>PRK06475 salicylate hydroxylase; Provisional
Probab=95.62 E-value=0.0017 Score=39.01 Aligned_cols=13 Identities=15% Similarity=0.153 Sum_probs=10.2
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7898289701268
Q gi|254780283|r 277 SIPGIFAAGDVAD 289 (321)
Q Consensus 277 s~p~Iya~GDv~~ 289 (321)
+..+|..+||.+-
T Consensus 290 ~~gRvvLiGDAAH 302 (400)
T PRK06475 290 GPDRTIFLGDASH 302 (400)
T ss_pred CCCCEEEEECCCC
T ss_conf 3784688403225
No 376
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.62 E-value=0.024 Score=32.28 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 76751999989777999999999869959999678
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
++-++|+|+|.|..|+++|..|.+.|.++.+.|.+
T Consensus 10 ~~Gk~V~V~GlG~sG~a~a~~L~~~G~~v~~~D~~ 44 (487)
T PRK03369 10 TPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (487)
T ss_pred CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 79898999915683899999999786979999898
No 377
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.60 E-value=0.029 Score=31.83 Aligned_cols=38 Identities=29% Similarity=0.298 Sum_probs=34.8
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 98767519999897779999999998699599996788
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
|+..=++|.|||+|.=|-.-|..+++.|++|+++|.++
T Consensus 1 M~~~Ik~VaViGAG~MG~gIA~~~a~~G~~V~l~D~~~ 38 (310)
T PRK06130 1 MDNPIQNLAIIGAGAMGSGIAALFASKGLDVVLIDPMP 38 (310)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 98998889897877999999999985899889997999
No 378
>KOG1238 consensus
Probab=95.59 E-value=0.016 Score=33.34 Aligned_cols=35 Identities=14% Similarity=0.308 Sum_probs=28.8
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-CCCEEEEECC
Q ss_conf 7675199998977799999999986-9959999678
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARA-MLKPVIIAGS 37 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~-g~~v~iie~~ 37 (321)
..+||.+|||||.||..-|-.|.+- .-+|+|+|+.
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaG 90 (623)
T KOG1238 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAG 90 (623)
T ss_pred CCCCCEEEECCCCHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 357998998987312788876513887349999568
No 379
>PRK07588 hypothetical protein; Provisional
Probab=95.58 E-value=0.0019 Score=38.74 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=10.2
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7898289701268
Q gi|254780283|r 277 SIPGIFAAGDVAD 289 (321)
Q Consensus 277 s~p~Iya~GDv~~ 289 (321)
+..+|..+||.+-
T Consensus 277 ~~GRV~LlGDAAH 289 (391)
T PRK07588 277 SRGRVLLVGDAAA 289 (391)
T ss_pred CCCCEEEEECCCC
T ss_conf 3598899715556
No 380
>PRK06753 hypothetical protein; Provisional
Probab=95.57 E-value=0.0019 Score=38.79 Aligned_cols=13 Identities=23% Similarity=0.204 Sum_probs=10.2
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7898289701268
Q gi|254780283|r 277 SIPGIFAAGDVAD 289 (321)
Q Consensus 277 s~p~Iya~GDv~~ 289 (321)
...+|..+||.+-
T Consensus 268 ~~grvvLiGDAAH 280 (373)
T PRK06753 268 VYGRTILLGDAAH 280 (373)
T ss_pred CCCCEEEEECCCC
T ss_conf 0585899811235
No 381
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=95.56 E-value=0.002 Score=38.65 Aligned_cols=32 Identities=25% Similarity=0.209 Sum_probs=29.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 75199998977799999999986995999967
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAG 36 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~ 36 (321)
.++|+|||||-||..||+.++|+|.+|+|+|=
T Consensus 3 ~~~ViVIGgGhAG~EAA~a~Ar~G~~v~L~em 34 (434)
T PRK05335 3 MKPVNVIGAGLAGSEAAWQLAKRGVPVELYEM 34 (434)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEE
T ss_conf 88569989868999999999968996799993
No 382
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=95.53 E-value=0.0015 Score=39.27 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=33.9
Q ss_pred CCCCC-CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88554-7898289701268844567899997999999999999742
Q gi|254780283|r 272 DSTAT-SIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 272 ~~~~T-s~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
.+++| .++|+|.+|-+++... =..|+++|-+|+.|+..++..+
T Consensus 354 ~tLEtK~i~gLf~AGQINGTTG--YEEAAaQGliAGINAa~~~~~~ 397 (621)
T PRK05192 354 PTLETKKIKGLFFAGQINGTTG--YEEAAAQGLIAGINAALKVQGK 397 (621)
T ss_pred HHHCCCCCCCEEECCCCCCCCH--HHHHHHCCHHHHHHHHHHHCCC
T ss_conf 3533165598777776677507--8998854679899999996599
No 383
>pfam06100 Strep_67kDa_ant Streptococcal 67 kDa myosin-cross-reactive antigen like family. Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis.
Probab=95.52 E-value=0.032 Score=31.60 Aligned_cols=38 Identities=32% Similarity=0.419 Sum_probs=31.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHHC----CCCEEEEECCC-CCCE
Q ss_conf 75199998977799999999986----99599996788-7756
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARA----MLKPVIIAGSD-LGGQ 42 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~----g~~v~iie~~~-~GG~ 42 (321)
+++.-|||+|.|+|+||.+|.|- |-++.|+|+.. +||.
T Consensus 2 ~~~AyivGsGiasLaaA~~LIrDa~~pg~~IhIlE~~~~~GGs 44 (500)
T pfam06100 2 NKSAYIIGSGLASLAAAVFLIRDGQMDGERIHILEELPLPGGS 44 (500)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC
T ss_conf 8659998976899998898864278786413898558889865
No 384
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=95.51 E-value=0.026 Score=32.09 Aligned_cols=52 Identities=21% Similarity=0.254 Sum_probs=33.4
Q ss_pred CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCC--------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5618069979900888554789828970126884--------456789999799999999999
Q gi|254780283|r 258 QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADER--------YRQAITAAAMGCMAALEVEHY 312 (321)
Q Consensus 258 ~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~--------~~~~~~A~~~G~~Aa~~i~~y 312 (321)
++..+++..++ +... +.+||+||+|.|+++. ...+..++-.|++|+.++.+|
T Consensus 396 Gl~id~~~qVl--~~~g-~pI~GLYAaGe~~~G~~~G~~y~~G~sl~~~~vfGriAG~~AA~~ 455 (456)
T PRK08274 396 GLKVDETARVR--FADG-RPSPNLFAAGEMMAGNVLGKGYTAGVGMTIGTVFGRIAGEEAARA 455 (456)
T ss_pred CCEECCCCCEE--CCCC-CEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 82599888657--8999-883998878134646657687524778999999999999999843
No 385
>TIGR00292 TIGR00292 thiazole biosynthesis enzyme; InterPro: IPR002922 This family includes P32318 from SWISSPROT a putative thiamine biosynthetic enzyme . This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.; GO: 0009228 thiamin biosynthetic process.
Probab=95.42 E-value=0.0026 Score=37.97 Aligned_cols=36 Identities=36% Similarity=0.580 Sum_probs=31.3
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCC--CCCCCCCCCC
Q ss_conf 12210000102556543101210133--3222344343
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIA--RRVTIVHRRS 179 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~--~~Vtli~r~~ 179 (321)
|-...|+|+|+|+||+-+|++|++-+ -||.+++|+=
T Consensus 19 ~~e~DViiVGAGpSGLtAAyylA~~gPDLKv~vlEr~l 56 (283)
T TIGR00292 19 YAESDVIIVGAGPSGLTAAYYLAKEGPDLKVVVLERKL 56 (283)
T ss_pred HHHCCEEEECCCCCHHHHHHHHHHCCCCEEEEEEEECC
T ss_conf 50106679878974668999998429980699985110
No 386
>pfam00996 GDI GDP dissociation inhibitor.
Probab=95.37 E-value=0.059 Score=30.01 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=31.3
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC-CCCE
Q ss_conf 98767519999897779999999998699599996788-7756
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQ 42 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~-~GG~ 42 (321)
|.+ +|||+|+|-|..=---|--|.+.|.+|+-+|+++ +||.
T Consensus 1 m~e-eyDVIIlGTGL~EsILaaaLS~~GKkVLHiDrN~yYGg~ 42 (439)
T pfam00996 1 MDE-EYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGE 42 (439)
T ss_pred CCC-CEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCCCCC
T ss_conf 998-502999799879999999997369989997799877863
No 387
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.35 E-value=0.034 Score=31.42 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=31.2
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 98767519999897779999999998699599996788
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
|+.+ +|.|||+|.=|-.-|..+++.|++|+|+|.++
T Consensus 1 M~i~--~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~ 36 (288)
T PRK08293 1 MTIK--KVTVAGAGVLGSQIAFQTAFKGFDVTIYDISE 36 (288)
T ss_pred CCCC--EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 9957--89998978899999999995799289998988
No 388
>PRK07045 putative monooxygenase; Reviewed
Probab=95.30 E-value=0.0027 Score=37.86 Aligned_cols=13 Identities=23% Similarity=0.314 Sum_probs=10.4
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7898289701268
Q gi|254780283|r 277 SIPGIFAAGDVAD 289 (321)
Q Consensus 277 s~p~Iya~GDv~~ 289 (321)
...+|+.+||.+-
T Consensus 283 ~~grvvLiGDAAH 295 (388)
T PRK07045 283 HKRNVVLLGDAAH 295 (388)
T ss_pred CCCCEEEEEECCC
T ss_conf 4585799960004
No 389
>pfam00670 AdoHcyase_NAD S-adenosyl-L-homocysteine hydrolase, NAD binding domain.
Probab=95.29 E-value=0.052 Score=30.37 Aligned_cols=33 Identities=12% Similarity=0.103 Sum_probs=26.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
+.++|+|=|+-|-.+|..|+.+|.+|++.|-+.
T Consensus 24 k~vvV~GYG~~GkGvA~~~rg~Ga~V~V~EvDP 56 (162)
T pfam00670 24 KVAVVCGYGDVGKGCAASLKGQGARVIVTEIDP 56 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCEEEEEECCC
T ss_conf 789996787667779998622999899994793
No 390
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.29 E-value=0.044 Score=30.79 Aligned_cols=37 Identities=27% Similarity=0.234 Sum_probs=32.1
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 98767519999897779999999998699599996788
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
|.+. ++|.|||+|.=|-.-|..+++.|++|+|+|.+.
T Consensus 1 M~~i-k~VaViGAG~MG~giA~~~a~~G~~V~l~D~~~ 37 (292)
T PRK07530 1 MMAI-KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 9998-889998966999999999996799689997988
No 391
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.24 E-value=0.043 Score=30.84 Aligned_cols=56 Identities=14% Similarity=0.100 Sum_probs=37.6
Q ss_pred CCCEECCCCEEEECCCCCCCCCCEEEECCCCCCC--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5618069979900888554789828970126884--------4567899997999999999999742
Q gi|254780283|r 258 QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADER--------YRQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 258 ~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~~--------~~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
++..++++.++ +... .-+||+||+|.+++.. ...+..|+-.|++|+.++.++....
T Consensus 510 Gl~id~~~qVL--d~dg-~pIpGLYAaG~~~Gg~~g~~Y~g~G~slg~~~~fGriAg~~AA~~~~~~ 573 (576)
T PRK12843 510 GLVTDADARVL--NADG-QPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHASKRTLAR 573 (576)
T ss_pred CEEECCCCCEE--CCCC-CEECCEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 81089987448--9998-8829975784344578989877405638889999999999999864302
No 392
>TIGR02023 BchP-ChlP geranylgeranyl reductase; InterPro: IPR010253 This entry represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll . It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).; GO: 0045550 geranylgeranyl reductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process.
Probab=95.17 E-value=0.0035 Score=37.17 Aligned_cols=31 Identities=35% Similarity=0.557 Sum_probs=28.6
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCCCCCCCC
Q ss_conf 0000102556543101210133322234434
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRR 178 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~ 178 (321)
+|+|||||++|--.|..|++.|.+|-|++|.
T Consensus 2 dV~viGGGPsGA~AAe~LA~~G~~tiLlER~ 32 (408)
T TIGR02023 2 DVAVIGGGPSGAAAAETLARAGIETILLERA 32 (408)
T ss_pred CEEEEECCCCHHHHHHHHHHCCCEEEEEEHH
T ss_conf 6789816850689999998649748863024
No 393
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=95.16 E-value=0.0027 Score=37.81 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=34.8
Q ss_pred HHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCC-CCCCCCCCCCEECCCCCC
Q ss_conf 86643232002322211-332011222222222-222222210000147766
Q gi|254780283|r 66 EQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVE-TQSGDLWHADAVVIATGS 115 (321)
Q Consensus 66 ~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~-~~~g~~~~a~~lIiAtG~ 115 (321)
+.+.+.++..+.+++.+ .|..|..+++..++. ..+++++++|++|+|+-.
T Consensus 212 ~~~~~~l~~~g~~i~l~~~V~~I~~~~~~v~~~~~~~g~~~~ad~VI~a~p~ 263 (430)
T TIGR03467 212 EPARRWLDSRGGEVRLGHRVRALEANAGGIRALIRAGGETLTADAVVLAVPP 263 (430)
T ss_pred HHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEEECCCEEEECCEEEECCCH
T ss_conf 9999999964976776983689999799889999509879977999989898
No 394
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.16 E-value=0.033 Score=31.48 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=31.1
Q ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 76751999989777999999999869959999678
Q gi|254780283|r 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 3 ~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
..+..++|+|.|-.|+++|.+|.+.|.+|.+.|.+
T Consensus 5 ~~~~~~LV~G~G~sG~s~a~~L~~~G~~V~~~D~~ 39 (448)
T PRK03803 5 ASDGLRIVVGLGKSGMSLVRFLARQGYQFAVTDTR 39 (448)
T ss_pred ECCCCEEEEEECHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 05995899998999999999999788959999189
No 395
>PRK01747 mnmC 5-methylaminomethyl-2-thiouridine methyltransferase; Reviewed
Probab=95.15 E-value=0.0026 Score=37.95 Aligned_cols=35 Identities=34% Similarity=0.545 Sum_probs=31.6
Q ss_pred CCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 22100001025565431012101333222344343
Q gi|254780283|r 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRS 179 (321)
Q Consensus 145 ~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~ 179 (321)
+.++|+|||+|-+|+-+|..|++.|.+|||+++.+
T Consensus 255 ~~~~VaVIGAGIAGas~A~~LA~rG~~VtVlDr~~ 289 (660)
T PRK01747 255 RNRDAAIIGGGIAGAALALALARRGWQVTLYEADE 289 (660)
T ss_pred CCCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 88718998938999999999997899689994798
No 396
>pfam03721 UDPG_MGDP_dh_N UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain. The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate.
Probab=95.14 E-value=0.04 Score=31.04 Aligned_cols=33 Identities=24% Similarity=0.251 Sum_probs=30.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
.+|.|||.|.-||..|..+++.|++|+.+|.++
T Consensus 1 MkI~ViGlGyVGl~~a~~la~~G~~V~g~D~d~ 33 (185)
T pfam03721 1 MRIAVIGLGYVGLPTAVCLAEIGHDVVGVDINQ 33 (185)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 979998978748999999994899399997998
No 397
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.13 E-value=0.031 Score=31.66 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=36.0
Q ss_pred CCCCHHHHH----HHHHHHHHHCCCCCCCE-EEEECCCCCCC---CC-CCCCCCC--CCCCCEECCCCCCCC
Q ss_conf 778978999----86643232002322211-33201122222---22-2222222--221000014776642
Q gi|254780283|r 57 TSIRGDWLM----EQMRQQAENFGTKIIQD-LVVSVDLDRHP---FL-VETQSGD--LWHADAVVIATGSEV 117 (321)
Q Consensus 57 ~~~~~~~l~----~~~~~~~~~~~v~~~~~-~V~~i~~~~~~---~~-v~~~~g~--~~~a~~lIiAtG~~~ 117 (321)
.+.+|.+++ ..+.++....+++++.+ .++.+-.+++. .. ....+|+ .+.++.+|||||..-
T Consensus 159 ~d~TG~~i~~~l~~~L~~~~~~~~I~~~~~~~~~dLi~~dg~~~Gv~~~d~~~G~~~~~~AkaVILATGG~g 230 (638)
T PRK07573 159 RGQTGQQLLLGAYSALSRQIAAGTVELFTRTEMLDLVVVDGRARGIVARNLVTGEIERHAADAVVLATGGYG 230 (638)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEECCEEEEEEEEECCCCCEEEEECCEEEECCCCCC
T ss_conf 896168999999999999873389889935799998998999999999965899489997167998578575
No 398
>PRK07236 hypothetical protein; Provisional
Probab=95.11 E-value=0.0034 Score=37.29 Aligned_cols=13 Identities=23% Similarity=0.186 Sum_probs=10.1
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7898289701268
Q gi|254780283|r 277 SIPGIFAAGDVAD 289 (321)
Q Consensus 277 s~p~Iya~GDv~~ 289 (321)
+..+|..+||.+-
T Consensus 303 ~~gRv~LiGDAAH 315 (386)
T PRK07236 303 AFGRVALLGDAAF 315 (386)
T ss_pred CCCCEEEEEHHHC
T ss_conf 5688899976517
No 399
>pfam02737 3HCDH_N 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain. This family also includes lambda crystallin.
Probab=95.09 E-value=0.039 Score=31.05 Aligned_cols=32 Identities=38% Similarity=0.462 Sum_probs=29.4
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 19999897779999999998699599996788
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
+|.|||+|.-|..-|..+++.|++|+++|.+.
T Consensus 1 kV~ViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 32 (180)
T pfam02737 1 KVAVIGAGTMGAGIAQVFARAGLEVVLVDISE 32 (180)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 98999978899999999996799399997998
No 400
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=95.06 E-value=0.0028 Score=37.76 Aligned_cols=56 Identities=27% Similarity=0.313 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCC-CCCCCCCCCCCCEECCCCCCC
Q ss_conf 97899986643232002322211-3320112222222-222222222100001477664
Q gi|254780283|r 60 RGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFL-VETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 60 ~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~-v~~~~g~~~~a~~lIiAtG~~ 116 (321)
....+...+.+.+.+.|++++.+ .|+.+..+++.+. |.+++| .+++|+||+|+|+.
T Consensus 199 d~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~V~t~~g-~i~ad~vV~AaGaw 256 (416)
T PRK00711 199 DCQLFTQRLAALAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG-VITADAYVVALGSY 256 (416)
T ss_pred CHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCEEEEEECCCC-EEEEEEEEEECCHH
T ss_conf 67999999999998538862002315899984998998853895-57501699933743
No 401
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.06 E-value=0.046 Score=30.64 Aligned_cols=33 Identities=36% Similarity=0.366 Sum_probs=29.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
++|.|||+|.-|-.-|..+++.|++|+++|.+.
T Consensus 4 ~~VaViGaG~mG~~IA~~~a~~G~~V~l~D~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 689998978899999999995799389997998
No 402
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.05 E-value=0.048 Score=30.53 Aligned_cols=33 Identities=30% Similarity=0.289 Sum_probs=29.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
++|.|||+|.-|-.-|..+++.|++|+|+|.++
T Consensus 4 k~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 889998876889999999995899889998998
No 403
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.01 E-value=0.047 Score=30.60 Aligned_cols=32 Identities=28% Similarity=0.346 Sum_probs=29.7
Q ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 19999897779999999998699599996788
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
+|+|+|+|--|.+-|..|.+.+++++++|+++
T Consensus 2 ~IiI~GaG~vG~~La~~Ls~e~~dV~vID~d~ 33 (455)
T PRK09496 2 KIIILGAGQVGGTLAERLVGENNDVTVIDTDE 33 (455)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 79999988899999999986899799998999
No 404
>KOG0029 consensus
Probab=95.01 E-value=0.0034 Score=37.28 Aligned_cols=41 Identities=27% Similarity=0.320 Sum_probs=30.9
Q ss_pred CCCCCCC-EEEECCCCCCCH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5547898-289701268844-5678999979999999999997
Q gi|254780283|r 274 TATSIPG-IFAAGDVADERY-RQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 274 ~~Ts~p~-Iya~GDv~~~~~-~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
+..++.+ +|.+|..+.... .+..-|..+|..||..|.+.+.
T Consensus 418 l~~pi~~~~ffage~t~~~~~~tm~GA~~sG~~~a~~i~~~~~ 460 (501)
T KOG0029 418 LAEPIKNRVFFAGEATSRKYPGTMHGAYLSGLRAASDILDSLI 460 (501)
T ss_pred HHCCCCCCEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 7456568189755433145776135588763888999999986
No 405
>PRK07121 hypothetical protein; Validated
Probab=94.95 E-value=0.046 Score=30.65 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCC-CCC---CCCCCCCC--CCCC-CEECCCCCCC
Q ss_conf 97899986643232002322211-332011222-222---22222222--2210-0001477664
Q gi|254780283|r 60 RGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDR-HPF---LVETQSGD--LWHA-DAVVIATGSE 116 (321)
Q Consensus 60 ~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~-~~~---~v~~~~g~--~~~a-~~lIiAtG~~ 116 (321)
.+..++..+.+.+++.+++++.+ +++.+-.+. +.. .++ .++. .+.+ +.||||||..
T Consensus 175 ~g~~l~~~l~~~~~~~gv~i~~~t~~~~Li~d~~G~V~Gv~~~-~~~~~~~i~A~k~VILAtGGf 238 (491)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYETRATRLIVDGDGRVVGVRAR-RFGETGAIRARKGVVLAAGGF 238 (491)
T ss_pred CHHHHHHHHHHHHHHCCCEEEECCEEEEEEECCCCCEEEEEEE-ECCCEEEEEECCCEEECCCCC
T ss_conf 4999999999999857987996779999999799988999999-789169998147279846996
No 406
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.92 E-value=0.04 Score=30.98 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=29.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 51999989777999999999869959999678
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
++|+|+|.|-.|.++|.+|.+.|.+++++|.+
T Consensus 4 KkvlV~GlG~SG~s~a~~L~~~g~~v~~~D~~ 35 (418)
T PRK00683 4 QRVVVLGLGVTGKSVARFLAQKGVYVIGVDNS 35 (418)
T ss_pred CEEEEEEECHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 66999808887999999999782989998298
No 407
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=94.90 E-value=0.05 Score=30.47 Aligned_cols=33 Identities=21% Similarity=0.182 Sum_probs=30.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
++|.|||.|.-||..|..++..|++|+.+|.++
T Consensus 4 kkI~ViGlGYVGL~~a~~lA~~G~~Vig~D~d~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 879998868778999999996889489998999
No 408
>TIGR00275 TIGR00275 conserved hypothetical protein TIGR00275; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases..
Probab=94.87 E-value=0.057 Score=30.11 Aligned_cols=106 Identities=20% Similarity=0.409 Sum_probs=64.3
Q ss_pred EEECCCHHHHHHHHHHHHCC--CCEEEEECCC-CC--------CEEEE-------ECCCCCCC--C--------------
Q ss_conf 99989777999999999869--9599996788-77--------56875-------01007877--4--------------
Q gi|254780283|r 9 LIIGSGPAGYTAAIYAARAM--LKPVIIAGSD-LG--------GQLMI-------TESIENYP--G-------------- 54 (321)
Q Consensus 9 vIIG~GpAGl~aA~~l~r~g--~~v~iie~~~-~G--------G~l~~-------~~~i~n~~--g-------------- 54 (321)
+|||+|.+|+.|+..+++.+ .+++++|... ++ |.+.. ...+.++| |
T Consensus 1 ~~~g~g~~g~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~ggg~c~~~~~~~~p~~~~~~~p~gg~~~~~~~~~~~~~~ 80 (411)
T TIGR00275 1 IVVGGGAAGLFCAANCARLGPEGRVLLLDNGKKPGRKVLLSGGGRCNFTNLCVDPGAYLSQNPRGGHFLKGALARFTPWD 80 (411)
T ss_pred CEECCCCHHHHHHHHHHHCCCCCEEEEEECCCCCCHHEEECCCCCEEEEEEECCCHHHHHCCCCCCHHHHHHHHHCCCHH
T ss_conf 91236301356666654226554068862574100000112785100000100504665237765225665665313213
Q ss_pred --------------------CCCCCCHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCC----CCCCCCCCCCCCCCEE
Q ss_conf --------------------7777897899986643232002322211-33201122222----2222222222210000
Q gi|254780283|r 55 --------------------FATSIRGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHP----FLVETQSGDLWHADAV 109 (321)
Q Consensus 55 --------------------~~~~~~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~----~~v~~~~g~~~~a~~l 109 (321)
||..-....+++.+....++.++++... .+..+...... |.... ++..+..+.+
T Consensus 81 ~~~~~~~~g~~~~~~~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 159 (411)
T TIGR00275 81 FIALVGAEGVALHEKALGQLFPCDDGAGQIVDCLLSECDKGGVELRLRSEVLGLEKLENGEKVRFTLQL-NGTVWGCEGL 159 (411)
T ss_pred HHHHHHHCCCEEHHHHCCCEECCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCEEEEEEEC-CCCEEECCCC
T ss_conf 555553114200011025310356644689999887553226213210023344430256404443300-3100000231
Q ss_pred CCCCCC
Q ss_conf 147766
Q gi|254780283|r 110 VIATGS 115 (321)
Q Consensus 110 IiAtG~ 115 (321)
++++|.
T Consensus 160 ~~~~g~ 165 (411)
T TIGR00275 160 IIATGG 165 (411)
T ss_pred EEECCC
T ss_conf 231365
No 409
>PRK07538 hypothetical protein; Provisional
Probab=94.87 E-value=0.004 Score=36.87 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=10.3
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7898289701268
Q gi|254780283|r 277 SIPGIFAAGDVAD 289 (321)
Q Consensus 277 s~p~Iya~GDv~~ 289 (321)
+..+|+.+||.+-
T Consensus 295 ~~GRV~LiGDAAH 307 (413)
T PRK07538 295 TRGRVTLLGDAAH 307 (413)
T ss_pred CCCCEEEEEHHHH
T ss_conf 2289999886531
No 410
>pfam01946 Thi4 Thi4 family. This family includes a putative thiamine biosynthetic enzyme.
Probab=94.87 E-value=0.0043 Score=36.69 Aligned_cols=36 Identities=36% Similarity=0.507 Sum_probs=32.0
Q ss_pred CCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCC
Q ss_conf 210000102556543101210133322234434332
Q gi|254780283|r 146 NKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL 181 (321)
Q Consensus 146 ~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l 181 (321)
...|+|+|+|++|+-+|..|++.+.||.+|+|+-.+
T Consensus 17 e~DV~IVGaGpsGL~aA~~LAk~g~KV~i~E~~ls~ 52 (229)
T pfam01946 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSP 52 (229)
T ss_pred HCCEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 268899887817999999998789859999645268
No 411
>TIGR00692 tdh L-threonine 3-dehydrogenase; InterPro: IPR004627 L-threonine 3-dehydrogenase (1.1.1.103 from EC) is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. It catalyses the conversion of L-threonine and NAD+ to L-2-amino-3-oxobutanoate and NADH. In Escherichia coli His-90 modulates substrate specificity and is believed part of the active site. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but are not detected by this HMM. ; GO: 0008270 zinc ion binding, 0008743 L-threonine 3-dehydrogenase activity, 0006567 threonine catabolic process.
Probab=94.86 E-value=0.04 Score=31.00 Aligned_cols=69 Identities=26% Similarity=0.307 Sum_probs=38.3
Q ss_pred CCEECCCCCCCCEEE-----EECCCCCCCEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCEEEEECC--CCCCCCCCCC
Q ss_conf 000014776642024-----652774332021012111111111221000010255654310121013--3322234434
Q gi|254780283|r 106 ADAVVIATGSEVKWL-----RLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKI--ARRVTIVHRR 178 (321)
Q Consensus 106 a~~lIiAtG~~~~~~-----~ipG~~~~~~~~v~~~~~~d~~~~~~k~v~ViGgG~~g~e~A~~L~~~--~~~Vtli~r~ 178 (321)
|+|+++=.-.-++.| ++-.++++.|.-||... .....|++++|.|+|++|+ +|.+.++. +.+|.+....
T Consensus 120 AEY~vvPA~Niwk~P~~i~p~~A~iqePlGNAVhTvL---~~~~~G~~vlv~GaGPiGl-ma~AVAKa~GA~~Vi~~d~n 195 (341)
T TIGR00692 120 AEYVVVPADNIWKNPKDIDPELAAIQEPLGNAVHTVL---ESDLAGEDVLVIGAGPIGL-MAVAVAKAAGARNVIVIDKN 195 (341)
T ss_pred EEEEEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHHH---CCCCCCCCEEEECCCHHHH-HHHHHHHHHCCCEEEEECCC
T ss_conf 8567606311125879887015866154110444652---5776887189985774789-99999877278405996586
No 412
>PRK07660 consensus
Probab=94.84 E-value=0.059 Score=30.04 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=29.8
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
++|.|||+|.=|-.-|..+++.|++|+|+|.++
T Consensus 4 k~VaViGaG~MG~gIA~~~a~~G~~V~l~D~~~ 36 (283)
T PRK07660 4 QKIVVIGAGQMGSGIAQVCAMAGYDVKVQDLKQ 36 (283)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 889998969899999999996698189997988
No 413
>PRK07411 hypothetical protein; Validated
Probab=94.83 E-value=0.075 Score=29.43 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=29.7
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCC
Q ss_conf 7519999897779999999998699-599996788
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAML-KPVIIAGSD 38 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~~ 38 (321)
+.+|+|||+|=-|-.+|.||+.+|. +..|+|.+.
T Consensus 38 ~a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~ 72 (390)
T PRK07411 38 AASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDI 72 (390)
T ss_pred HCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 49789988872379999999983897599974899
No 414
>pfam01210 NAD_Gly3P_dh_N NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus. NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain.
Probab=94.81 E-value=0.062 Score=29.90 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=30.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
++|.|||+|.=|.+.|..|++.|++|.++.+++
T Consensus 1 kKI~IiGaG~wGtAla~~la~n~~~V~l~~r~~ 33 (159)
T pfam01210 1 KKIAVLGAGSWGTALAKVLARNGHEVRLWGRDE 33 (159)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECC
T ss_conf 989999969999999999998799899999043
No 415
>pfam01494 FAD_binding_3 FAD binding domain. This domain is involved in FAD binding in a number of enzymes.
Probab=94.75 E-value=0.0048 Score=36.40 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=9.8
Q ss_pred CCCEEEECCCCC
Q ss_conf 898289701268
Q gi|254780283|r 278 IPGIFAAGDVAD 289 (321)
Q Consensus 278 ~p~Iya~GDv~~ 289 (321)
..+|..+||.+.
T Consensus 283 ~grv~LiGDAAH 294 (349)
T pfam01494 283 KGRVFLAGDAAH 294 (349)
T ss_pred CCCEEEEEECCC
T ss_conf 598999986102
No 416
>PRK06185 hypothetical protein; Provisional
Probab=94.73 E-value=0.0046 Score=36.47 Aligned_cols=37 Identities=24% Similarity=0.175 Sum_probs=19.3
Q ss_pred CCCCEEEECCCCCCCH----HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7898289701268844----567899997999999999999
Q gi|254780283|r 277 SIPGIFAAGDVADERY----RQAITAAAMGCMAALEVEHYL 313 (321)
Q Consensus 277 s~p~Iya~GDv~~~~~----~~~~~A~~~G~~Aa~~i~~yl 313 (321)
..++|+.+||.+-... .-...|+.|+...|.-...-|
T Consensus 282 ~~~rv~LiGDAAH~~~P~~GQG~N~ai~DA~~LA~~LA~~l 322 (409)
T PRK06185 282 HRPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAEPL 322 (409)
T ss_pred EECCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87989999744464797501468789999999999999998
No 417
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=94.72 E-value=0.0041 Score=36.76 Aligned_cols=55 Identities=18% Similarity=0.196 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCE-EEEECC-CCCCCCCCC-CCCC--CCCCCCEECCCCCCC
Q ss_conf 899986643232002322211-332011-222222222-2222--222100001477664
Q gi|254780283|r 62 DWLMEQMRQQAENFGTKIIQD-LVVSVD-LDRHPFLVE-TQSG--DLWHADAVVIATGSE 116 (321)
Q Consensus 62 ~~l~~~~~~~~~~~~v~~~~~-~V~~i~-~~~~~~~v~-~~~g--~~~~a~~lIiAtG~~ 116 (321)
.++...+.+.....+.+++.+ +.+.+. .+...-.|+ ..+| .++++|+||=|-|++
T Consensus 103 ~ev~~~L~~a~~~~g~~i~~~~~~v~~~d~~~~~~~V~~~~dG~~~~l~a~yvVGcDG~~ 162 (392)
T PRK08243 103 TEVTRDLMAAREAAGGPIVFEASDVALHDFDGDRPYVTYTKDGETHRIDCDFIAGCDGFH 162 (392)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCEEEEEECCCCEEEEEEEEEEECCCCC
T ss_conf 899999999999769979990599999956998259999449937999984675168898
No 418
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.71 E-value=0.066 Score=29.76 Aligned_cols=36 Identities=28% Similarity=0.333 Sum_probs=25.6
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCC-CCCCCCCCC
Q ss_conf 122100001025565431012101333-222344343
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIAR-RVTIVHRRS 179 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~-~Vtli~r~~ 179 (321)
.++++|+|+|+|.+|+-.+..++.++. +|.++.+.+
T Consensus 119 ~~g~~V~V~G~G~iGl~~~~~a~~~Ga~~Vi~~d~~~ 155 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSP 155 (280)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 9999899990786899999999984998799991998
No 419
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.71 E-value=0.079 Score=29.28 Aligned_cols=35 Identities=31% Similarity=0.441 Sum_probs=30.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCC
Q ss_conf 67519999897779999999998699-599996788
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAML-KPVIIAGSD 38 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~~ 38 (321)
.+.+|+|||+|-=|-.+|.+|+++|. +..|+|.+.
T Consensus 23 ~~a~VlVvGaGGLGs~~a~~La~aGVG~i~ivD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCE
T ss_conf 629789987777779999999984898299980999
No 420
>pfam03486 HI0933_like HI0933-like protein.
Probab=94.69 E-value=0.0044 Score=36.58 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=25.5
Q ss_pred ECCCCCCC-CCCEEEECCCCC-----CCHHHHHHHHHHHHHHHH
Q ss_conf 08885547-898289701268-----844567899997999999
Q gi|254780283|r 270 MPDSTATS-IPGIFAAGDVAD-----ERYRQAITAAAMGCMAAL 307 (321)
Q Consensus 270 ~~~~~~Ts-~p~Iya~GDv~~-----~~~~~~~~A~~~G~~Aa~ 307 (321)
++.+||+. +||+|.+|.+-+ ++++ ..+|-..|..|+.
T Consensus 362 ~~~TmeSk~~pgLyf~GEvLDvdg~~GGYN-Lq~AwssG~~AG~ 404 (405)
T pfam03486 362 SSKTMESKKVPGLFFAGEVLDVDGWTGGYN-LQWAWASGYAAGQ 404 (405)
T ss_pred CHHHHHHCCCCCEEEEEEEEEECCCCCCHH-HHHHHHHHHHHHC
T ss_conf 866674327998589997276035887899-9999999999759
No 421
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.67 E-value=0.062 Score=29.89 Aligned_cols=33 Identities=27% Similarity=0.283 Sum_probs=29.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
.+|+|||+|.=|..-|.+|++.|++|+++.+.+
T Consensus 1 MkI~IiGaGaiG~~~a~~L~~ag~~V~li~r~~ 33 (307)
T PRK06522 1 MKIAILGAGAIGGLFGARLAQAGHDVTLVARGA 33 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 989999914999999999984899889997888
No 422
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.64 E-value=0.068 Score=29.66 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
++|.|||+|.=|-.-|..+++.|++|+|+|.++
T Consensus 3 kkV~ViGaG~MG~~IA~~~a~~G~~V~l~D~~~ 35 (289)
T PRK09260 3 EKIVVVGAGVMGRGIAYVFASSGFQTTLVDISQ 35 (289)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 769997968878999999996899889997998
No 423
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.61 E-value=0.0053 Score=36.11 Aligned_cols=11 Identities=27% Similarity=0.127 Sum_probs=4.1
Q ss_pred CEEEECCCCCC
Q ss_conf 79900888554
Q gi|254780283|r 266 YIWTMPDSTAT 276 (321)
Q Consensus 266 ~i~~~~~~~~T 276 (321)
.+...|+...|
T Consensus 367 gv~~iNDSKaT 377 (501)
T PRK02006 367 DVDYVDDSKGT 377 (501)
T ss_pred CEEEECCCCCC
T ss_conf 88997378778
No 424
>pfam00899 ThiF ThiF family. This family contains a repeated domain in ubiquitin activating enzyme E1 and members of the bacterial ThiF/MoeB/HesA family.
Probab=94.58 E-value=0.14 Score=27.89 Aligned_cols=33 Identities=36% Similarity=0.534 Sum_probs=29.3
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCC
Q ss_conf 519999897779999999998699-599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAML-KPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~~ 38 (321)
.+|+|||+|--|-..|..|++.|. +++|+|.+.
T Consensus 2 skVlivG~GglG~~~~~~La~~Gvg~i~lvD~D~ 35 (134)
T pfam00899 2 SRVLVVGAGGLGSPAAEYLARAGVGKLTLVDFDT 35 (134)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 8899989888999999999993897499998956
No 425
>PRK06834 hypothetical protein; Provisional
Probab=94.52 E-value=0.0055 Score=36.04 Aligned_cols=11 Identities=36% Similarity=0.416 Sum_probs=6.6
Q ss_pred CCCEEEECCCC
Q ss_conf 89828970126
Q gi|254780283|r 278 IPGIFAAGDVA 288 (321)
Q Consensus 278 ~p~Iya~GDv~ 288 (321)
..+||.+||.+
T Consensus 264 ~gRVfLaGDAA 274 (488)
T PRK06834 264 DGRVLLAGDAA 274 (488)
T ss_pred CCCEEEECCCC
T ss_conf 78578803501
No 426
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=94.50 E-value=0.0059 Score=35.86 Aligned_cols=44 Identities=30% Similarity=0.402 Sum_probs=31.8
Q ss_pred CCCCCCCCEEEECCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 85547898289701268844-567899997999999999999742
Q gi|254780283|r 273 STATSIPGIFAAGDVADERY-RQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 273 ~~~Ts~p~Iya~GDv~~~~~-~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
.+.|+++|+|.+||-...+. .+-..|..+|..||..+..-+..|
T Consensus 422 ~~~Tpv~N~~laGd~~~~~~~~smE~A~~sGl~AA~~v~~~~~~~ 466 (485)
T COG3349 422 EQKTPIPNLLLAGDYTKQPYLGSMEGATLSGLLAANAILDNLGHH 466 (485)
T ss_pred CCCCCCCCHHHCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 877872121214521215776765301466889999888766513
No 427
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=94.47 E-value=0.084 Score=29.13 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=29.9
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf 7519999897779999999998699-5999967887
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAML-KPVIIAGSDL 39 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~~~ 39 (321)
+..|+|||+|=-|-.+|.||+++|. +..|+|.+..
T Consensus 42 ~a~VlvvG~GGLG~~~~~yLaaaGvG~i~ivD~D~v 77 (392)
T PRK07878 42 NARVLVIGAGGLGSPTLLYLAAAGVGTIGIVEFDVV 77 (392)
T ss_pred HCCEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 197899878757899999999828975999878996
No 428
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.45 E-value=0.071 Score=29.56 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=26.6
Q ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 98767-519999897779999999998699599996
Q gi|254780283|r 1 MASHD-SKILIIGSGPAGYTAAIYAARAMLKPVIIA 35 (321)
Q Consensus 1 M~~~~-~dVvIIG~GpAGl~aA~~l~r~g~~v~iie 35 (321)
|++.. ++|+|+|.|-.|+++|.+|.+.+. ++++|
T Consensus 1 ~~~~~~K~v~V~GlG~sG~a~~~~L~~~~~-~~~~d 35 (450)
T PRK01368 1 MNSHTKQKIGVFGLGKTGISVYEELQNKYD-LIVYD 35 (450)
T ss_pred CCCCCCCEEEEEEECHHHHHHHHHHHHCCC-EEEEE
T ss_conf 976689908999587879999999971999-89998
No 429
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=94.40 E-value=0.0057 Score=35.97 Aligned_cols=41 Identities=20% Similarity=0.036 Sum_probs=30.1
Q ss_pred CCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5547898289701268844567899997999999999999742
Q gi|254780283|r 274 TATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLSIH 316 (321)
Q Consensus 274 ~~Ts~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i~~yl~~~ 316 (321)
+....||+|.+|---.+.. +...+.+|+.||..|-.||..-
T Consensus 424 l~~~~pgL~l~G~~~~GVg--v~dcI~~g~~aA~~il~~l~~~ 464 (466)
T PRK12416 424 MMNLYPNIYLAGASYYGVG--IGACIGNGKNIANEIIATLNEP 464 (466)
T ss_pred HHHCCCCEEEECCCCCCCC--HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8840899899764678878--8999999999999999987520
No 430
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=94.39 E-value=0.1 Score=28.66 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=25.9
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCC-CCCCCCCC
Q ss_conf 12210000102556543101210133-32223443
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIA-RRVTIVHR 177 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~-~~Vtli~r 177 (321)
.++.+|+|||.|-.|.-.|.+|+..| -+++++..
T Consensus 136 L~~a~VlivG~GGLGs~~a~yLA~aGVG~i~lvD~ 170 (379)
T PRK08762 136 LARARVLLIGAGGLGSPAAFYLAAAGVGHLRIADH 170 (379)
T ss_pred HHHCCEEEECCCHHHHHHHHHHHHHCCCEEEEEEC
T ss_conf 97397899888755799999999837975897628
No 431
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=94.38 E-value=0.19 Score=27.06 Aligned_cols=32 Identities=38% Similarity=0.553 Sum_probs=20.7
Q ss_pred CEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5199998977-----------7999999999869959999678
Q gi|254780283|r 6 SKILIIGSGP-----------AGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 6 ~dVvIIG~Gp-----------AGl~aA~~l~r~g~~v~iie~~ 37 (321)
++|+|||+|| +|..|...|+..|.+++|+..+
T Consensus 8 kkvLviGsGp~~IGqa~EfDysg~qa~~al~e~g~~vilvN~N 50 (1063)
T PRK05294 8 KKILIIGSGPIVIGQACEFDYSGTQACKALREEGYRVVLVNSN 50 (1063)
T ss_pred CEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 8899989882510372332656999999999869989998798
No 432
>PRK09117 consensus
Probab=94.37 E-value=0.088 Score=29.02 Aligned_cols=33 Identities=36% Similarity=0.364 Sum_probs=29.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
++|.|||+|.-|-.-|..+++.|++|+++|.++
T Consensus 3 ~~VaViGaG~mG~~iA~~~a~~G~~V~l~D~~~ 35 (282)
T PRK09117 3 QTVGIIGAGTMGNGIAQACAVAGLDVVMVDISD 35 (282)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 779998977999999999996799689998988
No 433
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=94.35 E-value=0.0061 Score=35.78 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=9.4
Q ss_pred CCCEEEECCCCC
Q ss_conf 898289701268
Q gi|254780283|r 278 IPGIFAAGDVAD 289 (321)
Q Consensus 278 ~p~Iya~GDv~~ 289 (321)
..+|..+||.+-
T Consensus 299 ~GRVvLiGDAAH 310 (414)
T TIGR03219 299 HGRVALIGDAAH 310 (414)
T ss_pred CCCEEEEECCCC
T ss_conf 386899840224
No 434
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.31 E-value=0.0065 Score=35.60 Aligned_cols=12 Identities=33% Similarity=0.185 Sum_probs=4.7
Q ss_pred CCEEEECCCCCC
Q ss_conf 979900888554
Q gi|254780283|r 265 NYIWTMPDSTAT 276 (321)
Q Consensus 265 g~i~~~~~~~~T 276 (321)
+.+...|+...|
T Consensus 325 ~gv~~iNDSkaT 336 (458)
T PRK01710 325 NGVKYYNDSIAS 336 (458)
T ss_pred CCEEEEECCCCC
T ss_conf 476798157668
No 435
>KOG1399 consensus
Probab=94.30 E-value=0.0069 Score=35.47 Aligned_cols=32 Identities=19% Similarity=0.369 Sum_probs=25.9
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 67519999897779999999998699599996
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIA 35 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie 35 (321)
.+++|+|||+|++|+-.|.++.+....+.+..
T Consensus 185 ~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~ 216 (448)
T KOG1399 185 RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSV 216 (448)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 68669998878148999999998606761464
No 436
>PRK08244 hypothetical protein; Provisional
Probab=94.30 E-value=0.0068 Score=35.50 Aligned_cols=10 Identities=60% Similarity=0.780 Sum_probs=5.2
Q ss_pred CCEEEECCCC
Q ss_conf 9828970126
Q gi|254780283|r 279 PGIFAAGDVA 288 (321)
Q Consensus 279 p~Iya~GDv~ 288 (321)
.+||.+||.+
T Consensus 272 gRVfLaGDAA 281 (494)
T PRK08244 272 GRIFLAGDAA 281 (494)
T ss_pred CCEEEEECCC
T ss_conf 9689960401
No 437
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=94.30 E-value=0.073 Score=29.50 Aligned_cols=53 Identities=17% Similarity=0.323 Sum_probs=35.3
Q ss_pred CCCEECCCCEEEECCCCCCCCCCEEEECCCCCC------C--HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 561806997990088855478982897012688------4--4567899997999999999999
Q gi|254780283|r 258 QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADE------R--YRQAITAAAMGCMAALEVEHYL 313 (321)
Q Consensus 258 ~~~~~~~g~i~~~~~~~~Ts~p~Iya~GDv~~~------~--~~~~~~A~~~G~~Aa~~i~~yl 313 (321)
++..+++..++ |... .-+||+||+|.|+++ + ...+-.|+-.|.+|+.+|..|+
T Consensus 509 Gl~in~~~qVL--d~dg-~pIpGLYAaGe~~gg~~g~~Y~g~G~~lg~a~tfGriAG~~aA~~~ 569 (584)
T PRK12835 509 GLRTDEHARVL--RSDD-SVVPGLYAVGNTSAAVMGRSYAGAGATIGPAMTFGYVAARHIAAVV 569 (584)
T ss_pred CCCCCCCCCEE--CCCC-CEECCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 83299988618--9997-9869835685155577878856404518889999999999999701
No 438
>PRK07233 hypothetical protein; Provisional
Probab=94.27 E-value=0.04 Score=31.00 Aligned_cols=55 Identities=18% Similarity=0.136 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 899986643232002322211-3320112222222222222222100001477664
Q gi|254780283|r 62 DWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 62 ~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
..+.+.+.+.+.+.|.++..+ .|++|..+++..++...+|+++.+|+||+|+-..
T Consensus 197 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~~v~~v~~~g~~~~ad~VI~a~p~~ 252 (430)
T PRK07233 197 GTLLDALAEAIEARGGEIRLGTPVTEVVIEGGVVTGVETDGEEEAFDAVISTIPPP 252 (430)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEEECCCEEECCEEEECCCHH
T ss_conf 99999999999975999997997889999599899999799499939999899989
No 439
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.24 E-value=0.0067 Score=35.53 Aligned_cols=12 Identities=25% Similarity=0.398 Sum_probs=9.9
Q ss_pred CCCEEEECCCCC
Q ss_conf 898289701268
Q gi|254780283|r 278 IPGIFAAGDVAD 289 (321)
Q Consensus 278 ~p~Iya~GDv~~ 289 (321)
.++++.+||.+-
T Consensus 281 ~~Rv~LiGDAAH 292 (392)
T PRK08773 281 SGRVLTLGDAAH 292 (392)
T ss_pred CCCEEEEECHHH
T ss_conf 786899610442
No 440
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.22 E-value=0.094 Score=28.84 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=30.0
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
++|.|||+|.=|-.-|..+++.|++|+|+|.++
T Consensus 3 ~kV~ViGaG~mG~~IA~~~a~~G~~V~l~D~~~ 35 (284)
T PRK07819 3 QRVGVVGAGQMGSGIAEVCARAGVDVLVFETTE 35 (284)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 679998977899999999995799089997988
No 441
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=94.21 E-value=0.11 Score=28.56 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=25.6
Q ss_pred CCCCC--CEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 98767--5199998977-----------79999999998699599996788
Q gi|254780283|r 1 MASHD--SKILIIGSGP-----------AGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 1 M~~~~--~dVvIIG~Gp-----------AGl~aA~~l~r~g~~v~iie~~~ 38 (321)
|..+. ++|+|||+|| +|..|...|+..|.+++|+..+.
T Consensus 1 MPkr~dikkvLiiGsGpi~IGqa~EfDysg~qA~~aLkeeG~~vvlvN~NP 51 (1068)
T PRK12815 1 MPKRTDIKKILVIGSGPIIIGQAAEFDYSGTQACKALKEEGYQVVLVNPNP 51 (1068)
T ss_pred CCCCCCCCEEEEECCCCCHHCCHHHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 988677888999898815312344656569999999998699899988983
No 442
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.20 E-value=0.098 Score=28.75 Aligned_cols=33 Identities=30% Similarity=0.309 Sum_probs=29.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
.+|.|||+|.-|-.-|..+++.|++|+++|.+.
T Consensus 3 ~~VaViGaG~mG~giA~~~a~~G~~V~l~D~~~ 35 (308)
T PRK06129 3 GSIAIVGAGLIGRAWAIVFARAGHRVRLWDADP 35 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 879997778999999999985899389998988
No 443
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.15 E-value=0.0096 Score=34.62 Aligned_cols=14 Identities=7% Similarity=0.249 Sum_probs=6.6
Q ss_pred CCCEEEEECCCHHH
Q ss_conf 67519999897779
Q gi|254780283|r 4 HDSKILIIGSGPAG 17 (321)
Q Consensus 4 ~~~dVvIIG~GpAG 17 (321)
+.++|.+.=..|.-
T Consensus 34 ~G~~v~~~D~~~~~ 47 (487)
T PRK03369 34 FGARPTVCDDDPDA 47 (487)
T ss_pred CCCEEEEEECCCHH
T ss_conf 86979999898257
No 444
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.14 E-value=0.092 Score=28.90 Aligned_cols=33 Identities=24% Similarity=0.162 Sum_probs=30.1
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 519999897779999999998699599996788
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
.+|.|||.|.-||..|..++..|++|+.+|.++
T Consensus 1 MkI~ViGlGyVGl~~a~~lA~~G~~V~g~D~d~ 33 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
T ss_conf 979998978779999999994899489998999
No 445
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=94.14 E-value=0.0092 Score=34.74 Aligned_cols=165 Identities=22% Similarity=0.312 Sum_probs=86.1
Q ss_pred CCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC---------CCCCC----CCCCCC-----------------
Q ss_conf 221000010255654310121013332223443433221---------11121----122355-----------------
Q gi|254780283|r 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS---------EKILQ----EKLFLQ----------------- 194 (321)
Q Consensus 145 ~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~---------~~~~~----~~~~~~----------------- 194 (321)
....|+|+|+|++|+-+|.+|++.+.+|.+++|+-.+.. ++..+ +.++++
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds 108 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADS 108 (262)
T ss_pred HHCCEEEECCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCHHHHHHHHHCCCCEECCCCEEEECH
T ss_conf 43267998768505789999986796499997301468763344333560444253899999819852445796698327
Q ss_pred -------------CCCCCCCCCCEEECCCCCCCCCCCCCCCCEEEC-CCCC--C---CCCCCCCCCCCCCCCCCCCH-HH
Q ss_conf -------------443322223112114864333444443331420-3210--0---00011222211123223565-67
Q gi|254780283|r 195 -------------SNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLH-NKKE--G---NFFERNVDGIFIAIGYKPNT-KI 254 (321)
Q Consensus 195 -------------~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v~~~-~~~~--g---~~~~i~~D~vi~a~G~~pn~-~~ 254 (321)
.+.+++-...+..+. ....+++.|+.+. .... + ....+++..|+=++|-.... .+
T Consensus 109 ~e~~skl~~~a~~aGaki~n~~~veDvi-----~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~ 183 (262)
T COG1635 109 AEFASKLAARALDAGAKIFNGVSVEDVI-----VRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSF 183 (262)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEE-----EECCCCEEEEEEECCHHHHCCCCCCCCEEEEEEEEECCCCCHHHHHH
T ss_conf 9999999999873081024232477899-----81699468999825122205654275112478999678884289999
Q ss_pred HH-CC--CCEE---------CCCCEEEECCCCCCCCCCEEEECCCCC--CC---HHHHHHHHH-HHHHHHHHHHHHHHH
Q ss_conf 74-25--6180---------699799008885547898289701268--84---456789999-799999999999974
Q gi|254780283|r 255 FR-HQ--LKMT---------NTNYIWTMPDSTATSIPGIFAAGDVAD--ER---YRQAITAAA-MGCMAALEVEHYLSI 315 (321)
Q Consensus 255 ~~-~~--~~~~---------~~g~i~~~~~~~~Ts~p~Iya~GDv~~--~~---~~~~~~A~~-~G~~Aa~~i~~yl~~ 315 (321)
+. .. ++.+ +++--.++..+.+ =.||+|++|=.++ ++ +-.+.-+|- +|+.||..|.+.|..
T Consensus 184 ~~kr~~~l~~~~~Ge~~mw~e~~E~lvV~~T~e-V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~ 261 (262)
T COG1635 184 LAKRIPELGIEVPGEKSMWAERGEDLVVENTGE-VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL 261 (262)
T ss_pred HHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCEEEEHHHHHHHCCCCCCCCHHHHHHHCHHHHHHHHHHHHHC
T ss_conf 998565434556887521366777898844354-058737611456764188656741355664409999999998603
No 446
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.13 E-value=0.011 Score=34.31 Aligned_cols=13 Identities=31% Similarity=0.279 Sum_probs=5.0
Q ss_pred CCEEEECCCCCCC
Q ss_conf 9799008885547
Q gi|254780283|r 265 NYIWTMPDSTATS 277 (321)
Q Consensus 265 g~i~~~~~~~~Ts 277 (321)
+.+...|+...||
T Consensus 318 ~GV~~iNDSKaTn 330 (445)
T PRK04308 318 NGVVFIDDSKGTN 330 (445)
T ss_pred CCEEEEECCCCCC
T ss_conf 8988980798888
No 447
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.11 E-value=0.11 Score=28.52 Aligned_cols=37 Identities=16% Similarity=0.216 Sum_probs=24.9
Q ss_pred CCCCCCEEEEECCCCCCCCEEEEECCCC-CCCCCCCCC
Q ss_conf 1122100001025565431012101333-222344343
Q gi|254780283|r 143 FYKNKDVIVVGGGNTAAEEALHLAKIAR-RVTIVHRRS 179 (321)
Q Consensus 143 ~~~~k~v~ViGgG~~g~e~A~~L~~~~~-~Vtli~r~~ 179 (321)
..++++|+|+|+|.+|+=.+..+...|. +|.++.+.+
T Consensus 174 ~~~g~~VlV~GaG~iGl~a~~~ak~~Ga~~Vi~~d~~~ 211 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDD 211 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 99998899967376999999999983991899991988
No 448
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=94.11 E-value=0.0078 Score=35.14 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=10.1
Q ss_pred CCCEEEECCCCC
Q ss_conf 898289701268
Q gi|254780283|r 278 IPGIFAAGDVAD 289 (321)
Q Consensus 278 ~p~Iya~GDv~~ 289 (321)
.++|+.+||.+.
T Consensus 277 ~~Rv~LiGDAAH 288 (387)
T COG0654 277 RGRVVLIGDAAH 288 (387)
T ss_pred CCCEEEEECCCC
T ss_conf 488899955667
No 449
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=93.99 E-value=0.12 Score=28.28 Aligned_cols=37 Identities=19% Similarity=0.237 Sum_probs=26.8
Q ss_pred CCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 1122100001025565431012101333222344343
Q gi|254780283|r 143 FYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRS 179 (321)
Q Consensus 143 ~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~ 179 (321)
...+++|+|+|+|.+|+=.++.++.+|.+|..+...+
T Consensus 164 v~~g~~V~V~G~G~iGl~a~~~ak~~Ga~Vi~vd~~~ 200 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDP 200 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 8999889998974899999999998599799994999
No 450
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=93.98 E-value=0.056 Score=30.14 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=29.5
Q ss_pred CCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 2100001025565431012101333222344343
Q gi|254780283|r 146 NKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRS 179 (321)
Q Consensus 146 ~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~ 179 (321)
.-+|+|+|||..|.+.|.....++.+|+++.+..
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCH
T ss_conf 7608998776124069999723687069995277
No 451
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.93 E-value=0.009 Score=34.78 Aligned_cols=54 Identities=24% Similarity=0.256 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHCCCCCCCE-EEEECCCCCC-CCCCCCCCCCCCCCCEECCCCCC
Q ss_conf 899986643232002322211-3320112222-22222222222210000147766
Q gi|254780283|r 62 DWLMEQMRQQAENFGTKIIQD-LVVSVDLDRH-PFLVETQSGDLWHADAVVIATGS 115 (321)
Q Consensus 62 ~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~-~~~v~~~~g~~~~a~~lIiAtG~ 115 (321)
..+++.+.+.+++.|++|.++ +|..|..+++ ...+.+.++..+++|.||.+..-
T Consensus 224 ~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~ 279 (487)
T COG1233 224 GALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADP 279 (487)
T ss_pred HHHHHHHHHHHHHCCCEEECCCEEEEEEEECCCEEEEEECCCCEEECCEEEECCCH
T ss_conf 99999999999974939967871359997189058998067607514689986887
No 452
>PRK09126 hypothetical protein; Provisional
Probab=93.92 E-value=0.0083 Score=35.01 Aligned_cols=12 Identities=25% Similarity=0.146 Sum_probs=10.0
Q ss_pred CCCEEEECCCCC
Q ss_conf 898289701268
Q gi|254780283|r 278 IPGIFAAGDVAD 289 (321)
Q Consensus 278 ~p~Iya~GDv~~ 289 (321)
.++|+.+||.+-
T Consensus 279 ~~Rv~LiGDAAH 290 (392)
T PRK09126 279 AKRFALIGDAAV 290 (392)
T ss_pred CCCCEEEEHHHH
T ss_conf 478589870321
No 453
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=93.88 E-value=0.081 Score=29.23 Aligned_cols=35 Identities=26% Similarity=0.419 Sum_probs=30.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf 7519999897779999999998699-5999967887
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAML-KPVIIAGSDL 39 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~~~ 39 (321)
+.+|+|||+|=-|-.+|.||+..|. +..|+|.+..
T Consensus 41 ~a~VlvvG~GGLG~p~~~yLaaaGvG~i~ivD~D~V 76 (370)
T PRK05600 41 NARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTV 76 (370)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 197899888757899999999828974898738982
No 454
>PRK12862 malic enzyme; Reviewed
Probab=93.86 E-value=0.12 Score=28.27 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=29.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCCC---EEEEECCC
Q ss_conf 75199998977799999999986995---99996788
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAMLK---PVIIAGSD 38 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~~---v~iie~~~ 38 (321)
+-+|+|.|+|.||++|+.-+...|.+ +++.|+.-
T Consensus 192 ~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~D~~G 228 (761)
T PRK12862 192 DVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKG 228 (761)
T ss_pred HEEEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 7189997887889999999998399810179994678
No 455
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.82 E-value=0.14 Score=27.85 Aligned_cols=37 Identities=22% Similarity=0.121 Sum_probs=28.6
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 98767519999897779999999998699599996788
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
|+.. +.|.|||+|.=|..-|..++..|++|.++|.+.
T Consensus 4 m~~I-k~VaVIGaG~MG~giAa~~a~~G~~V~l~D~~~ 40 (321)
T PRK07066 4 ITDI-KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 2578-879998887888999999994798599996988
No 456
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=93.80 E-value=0.0092 Score=34.72 Aligned_cols=16 Identities=25% Similarity=0.210 Sum_probs=13.2
Q ss_pred CCCCCCEECCCCCCCC
Q ss_conf 2221000014776642
Q gi|254780283|r 102 DLWHADAVVIATGSEV 117 (321)
Q Consensus 102 ~~~~a~~lIiAtG~~~ 117 (321)
+++++++||=|-|++.
T Consensus 195 ~tvrA~YlVGcDGA~S 210 (634)
T PRK08294 195 ETVRAKYVVGCDGARS 210 (634)
T ss_pred EEEEEEEEEECCCCCC
T ss_conf 7999617987687763
No 457
>PRK08774 consensus
Probab=93.79 E-value=0.0093 Score=34.70 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHHHHHC-CCCCCC-EEEEECC---CCCCCCCCCCCCCC-CCCCCEECCCCCCCC
Q ss_conf 89789998664323200-232221-1332011---22222222222222-221000014776642
Q gi|254780283|r 59 IRGDWLMEQMRQQAENF-GTKIIQ-DLVVSVD---LDRHPFLVETQSGD-LWHADAVVIATGSEV 117 (321)
Q Consensus 59 ~~~~~l~~~~~~~~~~~-~v~~~~-~~V~~i~---~~~~~~~v~~~~g~-~~~a~~lIiAtG~~~ 117 (321)
+....+.+.+.+.+..+ ++.... .+++.+. ......++.+.+|+ .++++.||.|-|+..
T Consensus 106 i~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~i~a~llVgADG~~S 170 (402)
T PRK08774 106 VVARDFGEALQARLDELTHLRRYRPARCIGVEPVQDGLRAVRLATADGEQLVRARLVVGADGSHS 170 (402)
T ss_pred CHHHHHHHHHHHHHHHCCCCEEEECEEEEEEEEECCCCCEEEEEECCCCEEEEECEEEECCCCCC
T ss_conf 01699999999999857894898222899999953686169999379957983059999589984
No 458
>PRK07608 hypothetical protein; Provisional
Probab=93.79 E-value=0.0093 Score=34.71 Aligned_cols=13 Identities=31% Similarity=0.480 Sum_probs=10.5
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7898289701268
Q gi|254780283|r 277 SIPGIFAAGDVAD 289 (321)
Q Consensus 277 s~p~Iya~GDv~~ 289 (321)
..++|+.+||.+-
T Consensus 279 ~~~rv~LiGDAAH 291 (389)
T PRK07608 279 VAPRVALVGDAAH 291 (389)
T ss_pred HCCCEEEECCHHC
T ss_conf 1265256514020
No 459
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.77 E-value=0.15 Score=27.74 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=30.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCC
Q ss_conf 67519999897779999999998699-599996788
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAML-KPVIIAGSD 38 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~~ 38 (321)
++.+|+|||+|--|-.+|.+|++.|. +..|+|.+.
T Consensus 20 ~~s~VlivG~GGlGs~~~~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 649789988778899999999983997589997874
No 460
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=93.76 E-value=0.11 Score=28.45 Aligned_cols=46 Identities=20% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCCCCCE-EEEECCCCCCC-CCCCC-----CCCCCCCCCEECCCCCCCCEEEE
Q ss_conf 2322211-33201122222-22222-----22222210000147766420246
Q gi|254780283|r 76 GTKIIQD-LVVSVDLDRHP-FLVET-----QSGDLWHADAVVIATGSEVKWLR 121 (321)
Q Consensus 76 ~v~~~~~-~V~~i~~~~~~-~~v~~-----~~g~~~~a~~lIiAtG~~~~~~~ 121 (321)
++.++.. +|..+...++. +.+.+ .+..++++|.||+|||-....|.
T Consensus 292 ~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~ 344 (436)
T COG3486 292 DVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPS 344 (436)
T ss_pred CEEECCCCCEEEEECCCCCEEEEEEEECCCCCCEEEEEEEEEEECCCCCCCCH
T ss_conf 70001355213555278953888876425798368886189980345667864
No 461
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC; InterPro: IPR011967 This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring . The sequences included in this entry are all found in possible operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN . Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. .
Probab=93.72 E-value=0.089 Score=28.98 Aligned_cols=37 Identities=27% Similarity=0.242 Sum_probs=29.8
Q ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9876751999989777999999999869959999678
Q gi|254780283|r 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 1 M~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
|-.+..+|+|||+|.=|==-|--+++.||.|.|||..
T Consensus 1 al~~~v~vaVIGaGaMGaGIA~VAA~aGH~V~LYD~r 37 (508)
T TIGR02279 1 ALINVVKVAVIGAGAMGAGIAQVAARAGHQVLLYDIR 37 (508)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECCC
T ss_conf 9654106899646852103899998259848872288
No 462
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.72 E-value=0.097 Score=28.77 Aligned_cols=34 Identities=24% Similarity=0.302 Sum_probs=28.5
Q ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 8767519999897779999999998699599996
Q gi|254780283|r 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIA 35 (321)
Q Consensus 2 ~~~~~dVvIIG~GpAGl~aA~~l~r~g~~v~iie 35 (321)
.+++.+|+|||||..+.-=+..|.+.|.+++|+.
T Consensus 21 ~s~klkvLVVGGG~VA~RKi~~Ll~agA~VtVVS 54 (222)
T PRK05562 21 LSNKIKVLVIGGGKAAFIKGKTFLKKGCYVEILS 54 (222)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
T ss_conf 1267669999987999999999987899899987
No 463
>PRK07232 malic enzyme; Reviewed
Probab=93.71 E-value=0.13 Score=28.02 Aligned_cols=35 Identities=20% Similarity=0.256 Sum_probs=30.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCC---EEEEECCC
Q ss_conf 675199998977799999999986995---99996788
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAMLK---PVIIAGSD 38 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~~---v~iie~~~ 38 (321)
.+-+|+|.|+|.||++|+.-+...|.+ +++.|+.-
T Consensus 185 ~~~kiv~~GaGaa~~a~~~ll~~~G~~~~ni~~~d~~G 222 (753)
T PRK07232 185 EDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKG 222 (753)
T ss_pred HHEEEEEECCCHHHHHHHHHHHHCCCCHHCEEEEECCC
T ss_conf 67189997886888999999998499801079995778
No 464
>pfam01266 DAO FAD dependent oxidoreductase. This family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Probab=93.69 E-value=0.0091 Score=34.75 Aligned_cols=56 Identities=29% Similarity=0.398 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 97899986643232002322211-3320112222222222222222100001477664
Q gi|254780283|r 60 RGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 60 ~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
.+..+...+.+.+.+.|++++.+ +|.++..+++.+.|.+++|+ +++|+||+|+|..
T Consensus 145 ~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~-i~a~~VV~a~G~~ 201 (309)
T pfam01266 145 DPARLLRALARAAEALGVEILEGTEVTGLEREGGGVTVETADGE-IRADKVVNAAGAW 201 (309)
T ss_pred CCHHHHHHHHHHHHHCCCEEECCCEEEEEEEECCEEEEEECCCE-ECCCEEEECCCHH
T ss_conf 51243679999998779699917689999998999999989970-8589999977742
No 465
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=93.65 E-value=0.0097 Score=34.61 Aligned_cols=12 Identities=25% Similarity=0.268 Sum_probs=10.0
Q ss_pred CCCEEEECCCCC
Q ss_conf 898289701268
Q gi|254780283|r 278 IPGIFAAGDVAD 289 (321)
Q Consensus 278 ~p~Iya~GDv~~ 289 (321)
.++|+.+||.+-
T Consensus 292 ~~Rv~LiGDAAH 303 (413)
T PRK07364 292 QHRLALVGDAAH 303 (413)
T ss_pred CCCCEEEHHHHH
T ss_conf 477235320443
No 466
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=93.61 E-value=0.28 Score=26.09 Aligned_cols=34 Identities=32% Similarity=0.505 Sum_probs=28.4
Q ss_pred CCCCEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEEC
Q ss_conf 7675199998977-----------799999999986995999967
Q gi|254780283|r 3 SHDSKILIIGSGP-----------AGYTAAIYAARAMLKPVIIAG 36 (321)
Q Consensus 3 ~~~~dVvIIG~Gp-----------AGl~aA~~l~r~g~~v~iie~ 36 (321)
+.+.+|+|+|+|| ....|+..|++.|.+++++-.
T Consensus 552 ~~~~kvliLGsGP~RIGqgiEFDYc~vha~~aLr~~G~etImiN~ 596 (1068)
T PRK12815 552 SEKKKVLILGSGPIRIGQGIEFDYMCVHAAFALKKEGYETIMINN 596 (1068)
T ss_pred CCCCEEEEECCCCCEECCCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 898349995678714224424002589999999968974899627
No 467
>TIGR01372 soxA sarcosine oxidase, alpha subunit family; InterPro: IPR006277 This set of sequences describe the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members share the same function. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate . Bacterial sarcosine oxidases have been isolated from over a dozen different organisms and fall into two major classes (1) monomeric form that contains only covalent flavin and (2) heterotetrameric (alpha, beta, gamma, delta) form that contain a covalent and noncovalent flavin, this entry represents the heterotetrameric form. ; GO: 0008115 sarcosine oxidase activity, 0046653 tetrahydrofolate metabolic process.
Probab=93.59 E-value=0.025 Score=32.22 Aligned_cols=100 Identities=24% Similarity=0.265 Sum_probs=56.4
Q ss_pred CEEEEECCCCCCCCEEEEECCCCCCCCCCCCCC----CCCC-----------CCC---CCCCCCCCCCCCCCCCCEEECC
Q ss_conf 000010255654310121013332223443433----2211-----------112---1122355443322223112114
Q gi|254780283|r 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS----LRSE-----------KIL---QEKLFLQSNIDFLFDTEVVDVI 209 (321)
Q Consensus 148 ~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~----l~~~-----------~~~---~~~~~~~~~i~~~~~~~v~~i~ 209 (321)
.|+|||+|+.|+=.|..-++-|.+|.|+.-.++ |+.+ .+. +.+|...+++.++..+.+--..
T Consensus 178 DVLVVGaGPAGLAAA~aAa~~GArViL~DE~~~~GGsL~~~~g~~IDG~PA~~W~~~t~aeL~a~~~v~~L~RTT~~G~Y 257 (1026)
T TIGR01372 178 DVLVVGAGPAGLAAALAAARAGARVILVDEQAEAGGSLLSEAGETIDGKPAADWAAATVAELEALPEVTLLPRTTAFGYY 257 (1026)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCEEEEE
T ss_conf 47887889679999999964798899970676577755677876017801899999999997418981674354055451
Q ss_pred CCCCCCCCCCCCCCEEECCCCCCCC----CCCCCCCCCCCCCCC
Q ss_conf 8643334444433314203210000----011222211123223
Q gi|254780283|r 210 GSIPEPPLFPSVSGVRLHNKKEGNF----FERNVDGIFIAIGYK 249 (321)
Q Consensus 210 g~~~~~~~~~~~~~v~~~~~~~g~~----~~i~~D~vi~a~G~~ 249 (321)
-.+.....+ +++ ..+.....++. -.+-+..|++|+|..
T Consensus 258 D~N~~g~~E-R~~-DHL~~P~~g~~ReRlWrvRAkrvVLA~GA~ 299 (1026)
T TIGR01372 258 DHNTVGALE-RVT-DHLDAPAKGVPRERLWRVRAKRVVLATGAL 299 (1026)
T ss_pred CCCEEEEEE-EHH-CCCCCCCCCCCCCEEEEECCCEEEECCCCC
T ss_conf 477478762-011-366778874853305777253456605764
No 468
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=93.59 E-value=0.011 Score=34.31 Aligned_cols=13 Identities=38% Similarity=0.639 Sum_probs=10.4
Q ss_pred CCCCEEEECCCCC
Q ss_conf 7898289701268
Q gi|254780283|r 277 SIPGIFAAGDVAD 289 (321)
Q Consensus 277 s~p~Iya~GDv~~ 289 (321)
..++|..+||.+-
T Consensus 279 ~~~rvvLiGDAAH 291 (391)
T PRK08020 279 VQPGLALVGDAAH 291 (391)
T ss_pred HCCCEEEECCHHH
T ss_conf 0598888614231
No 469
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.51 E-value=0.15 Score=27.67 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=28.7
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 51999989777999999999869959999678
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
.+|+|+|+|.=|...|..|++.|++|+++-++
T Consensus 1 MkI~I~GaGAiG~~~a~~L~~~g~~V~lv~r~ 32 (306)
T PRK12921 1 MKIAVVGAGAVGGTFGARLLEAGRDVTFLGRS 32 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 98999992499999999998369988999700
No 470
>PRK10015 hypothetical protein; Provisional
Probab=93.49 E-value=0.011 Score=34.20 Aligned_cols=40 Identities=25% Similarity=0.093 Sum_probs=29.8
Q ss_pred CCCCCCEEEECCCCCC--C----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5478982897012688--4----45678999979999999999997
Q gi|254780283|r 275 ATSIPGIFAAGDVADE--R----YRQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 275 ~Ts~p~Iya~GDv~~~--~----~~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
+..-||+-.+||.++- + .+-...||.+|.+||..|.+=+.
T Consensus 291 kl~~dG~llvGDAAGfv~n~~~~~~Gi~~Am~SG~lAAeai~~A~~ 336 (429)
T PRK10015 291 QLVNDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIAAKE 336 (429)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 5225986999517677568774221179999999999999999997
No 471
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=93.47 E-value=0.15 Score=27.63 Aligned_cols=37 Identities=19% Similarity=0.337 Sum_probs=26.9
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCC---CCCCCCCCCC
Q ss_conf 122100001025565431012101333---2223443433
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIAR---RVTIVHRRSS 180 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~---~Vtli~r~~~ 180 (321)
.+..+|++.|+|..|+-++..|...+. +++++.|..-
T Consensus 197 l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 197 LKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 2203899967758899999999982898445899816763
No 472
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.44 E-value=0.15 Score=27.60 Aligned_cols=32 Identities=31% Similarity=0.253 Sum_probs=29.2
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 51999989777999999999869959999678
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
.+|.|||+|.=|..-|..|++.|.+|+++.++
T Consensus 3 MkI~IiGaGAiG~~~a~~L~~ag~dV~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 88999882399999999998489973999947
No 473
>PTZ00188 adrenodoxin reductase; Provisional
Probab=93.44 E-value=0.011 Score=34.22 Aligned_cols=16 Identities=38% Similarity=0.665 Sum_probs=7.9
Q ss_pred EEEEECCCHHHHHHHHHHHH
Q ss_conf 19999897779999999998
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAAR 26 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r 26 (321)
.++|||-| ..|+..+|
T Consensus 199 ~avVIGnG----NVALDVAR 214 (506)
T PTZ00188 199 TCIIIGNG----NVSLDIAR 214 (506)
T ss_pred EEEEECCC----HHHHHHHH
T ss_conf 47997887----35888787
No 474
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=93.43 E-value=0.15 Score=27.60 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=29.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf 7519999897779999999998699-5999967887
Q gi|254780283|r 5 DSKILIIGSGPAGYTAAIYAARAML-KPVIIAGSDL 39 (321)
Q Consensus 5 ~~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~~~ 39 (321)
+.+|+|||+|==|-.+|.||+.+|. ++.|+|.+..
T Consensus 28 ~s~VlvvG~GGLG~~~~~yLa~aGvG~i~i~D~D~v 63 (355)
T PRK05597 28 DAKVSVIGAGGLGSPALLYLAGAGVGHITIIDDDVV 63 (355)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 296899877766899999999849975999729992
No 475
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.43 E-value=0.21 Score=26.85 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=30.2
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC--CEEEEECCC
Q ss_conf 67519999897779999999998699--599996788
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAML--KPVIIAGSD 38 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~--~v~iie~~~ 38 (321)
.+-+|.|||+|.-|-++|+.|...++ +.+|+|..+
T Consensus 2 ~r~Kv~IIGaG~VG~~~A~~l~~~~l~~el~L~Di~~ 38 (312)
T cd05293 2 PRNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 9886999897888999999999669988799993889
No 476
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=93.38 E-value=0.012 Score=34.02 Aligned_cols=39 Identities=31% Similarity=0.216 Sum_probs=29.4
Q ss_pred CCCCCCEEEECCCCCC--C----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5478982897012688--4----4567899997999999999999
Q gi|254780283|r 275 ATSIPGIFAAGDVADE--R----YRQAITAAAMGCMAALEVEHYL 313 (321)
Q Consensus 275 ~Ts~p~Iya~GDv~~~--~----~~~~~~A~~~G~~Aa~~i~~yl 313 (321)
+..-||+-.+||.++- + .+-...||.+|.+||..|.+=+
T Consensus 291 ~l~~dG~llvGDAAG~v~n~~~~~~Gi~~Am~SG~lAAeai~~A~ 335 (428)
T PRK10157 291 ELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAM 335 (428)
T ss_pred CEECCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 485399899970777756767522219999999999999999999
No 477
>pfam02558 ApbA Ketopantoate reductase PanE/ApbA. This is a family of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, EC:1.1.1.169. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) <= 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway. ApbA and PanE are allelic. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway.
Probab=93.36 E-value=0.13 Score=27.93 Aligned_cols=31 Identities=32% Similarity=0.359 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 9999897779999999998699599996788
Q gi|254780283|r 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38 (321)
Q Consensus 8 VvIIG~GpAGl~aA~~l~r~g~~v~iie~~~ 38 (321)
|.|+|+|.-|..-|.+|.+.|.+++++.+.+
T Consensus 1 I~IiGaGaiG~~~a~~L~~ag~~V~lv~R~~ 31 (150)
T pfam02558 1 IAILGAGAVGSLYGARLARAGHDVTLIARGR 31 (150)
T ss_pred CEEECCCHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 9999668999999999997799289997563
No 478
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.34 E-value=0.012 Score=34.05 Aligned_cols=12 Identities=25% Similarity=0.230 Sum_probs=10.2
Q ss_pred CCCEEEECCCCC
Q ss_conf 898289701268
Q gi|254780283|r 278 IPGIFAAGDVAD 289 (321)
Q Consensus 278 ~p~Iya~GDv~~ 289 (321)
.++|+.+||.+-
T Consensus 278 ~~rv~LiGDAAH 289 (384)
T PRK08849 278 KNNCVLLGDAAH 289 (384)
T ss_pred CCCEEEECCHHH
T ss_conf 688899725233
No 479
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.33 E-value=0.011 Score=34.26 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=14.8
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 789828970126884456789999799999999
Q gi|254780283|r 277 SIPGIFAAGDVADERYRQAITAAAMGCMAALEV 309 (321)
Q Consensus 277 s~p~Iya~GDv~~~~~~~~~~A~~~G~~Aa~~i 309 (321)
..||+|.+-=+.+++.++ |-.-|++.|..|
T Consensus 329 ~~~~l~~a~G~~G~G~~~---ap~~G~~lA~li 358 (377)
T PRK11259 329 GHPNVLVASGCSGHGFKF---ASVLGEILADLA 358 (377)
T ss_pred CCCCEEEEECCHHHHHHH---HHHHHHHHHHHH
T ss_conf 989999998915899999---999999999998
No 480
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=93.30 E-value=0.16 Score=27.45 Aligned_cols=32 Identities=19% Similarity=0.023 Sum_probs=28.9
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 51999989777999999999869959999678
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGS 37 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~ 37 (321)
++|.|||+|.=|-+=|...++.|++|.++|.+
T Consensus 3 kkVAVIGAGvMGsGwAa~FA~aG~~V~L~Dp~ 34 (489)
T PRK07531 3 MKAACIGGGVIGGGWAARFLLNGWDVAVFDPH 34 (489)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 67999871886899999999579969999488
No 481
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=93.30 E-value=0.28 Score=26.09 Aligned_cols=34 Identities=26% Similarity=0.464 Sum_probs=28.7
Q ss_pred CCCCEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEEC
Q ss_conf 7675199998977-----------799999999986995999967
Q gi|254780283|r 3 SHDSKILIIGSGP-----------AGYTAAIYAARAMLKPVIIAG 36 (321)
Q Consensus 3 ~~~~dVvIIG~Gp-----------AGl~aA~~l~r~g~~v~iie~ 36 (321)
+.+++|+|+|+|| .+..|+..|++.|.+++++-.
T Consensus 551 ~~~~kvlvlGsGp~rIGqgiEFDY~~v~a~~alk~~G~~~imIN~ 595 (1063)
T PRK05294 551 SDRKKVMILGGGPNRIGQGIEFDYCCVHAALALREAGYETIMVNC 595 (1063)
T ss_pred CCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECC
T ss_conf 788637996577732044423006799999999965981589537
No 482
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=93.29 E-value=0.013 Score=33.76 Aligned_cols=44 Identities=27% Similarity=0.412 Sum_probs=31.2
Q ss_pred ECCCCCC-CCCCEEEECCCCC-----CCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0888554-7898289701268-----8445678999979999999999997
Q gi|254780283|r 270 MPDSTAT-SIPGIFAAGDVAD-----ERYRQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 270 ~~~~~~T-s~p~Iya~GDv~~-----~~~~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
++.+|++ .+||+|.||.|-+ ++++ ..+|-..|..|+..+..|++
T Consensus 359 d~kTmesk~vPGLyf~GEvlDv~g~tGGYN-~q~A~asG~~Ag~~~~~~~~ 408 (408)
T COG2081 359 DSKTMESKKVPGLYFAGEVLDVTGWTGGYN-FQWAWASGWAAGQGAAAWLA 408 (408)
T ss_pred CHHHHHHHCCCCCEEEEEEEEECCCCCCHH-HHHHHHHHHHHHHHHHHHCC
T ss_conf 877777640898388778888405777479-99999999999986566309
No 483
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=93.28 E-value=0.16 Score=27.48 Aligned_cols=36 Identities=11% Similarity=0.164 Sum_probs=24.7
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCC-CCCCCCCCC
Q ss_conf 122100001025565431012101333-222344343
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIAR-RVTIVHRRS 179 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~-~Vtli~r~~ 179 (321)
..+++|+|+|+|.+|+=.+..++..|. +|.++...+
T Consensus 168 ~~g~~VlV~G~G~iGl~~~~~ak~~Ga~~Vi~~d~~~ 204 (343)
T PRK09880 168 LQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADLSP 204 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 5698899984776799999999986998799997978
No 484
>PRK07190 hypothetical protein; Provisional
Probab=93.26 E-value=0.013 Score=33.78 Aligned_cols=11 Identities=45% Similarity=0.691 Sum_probs=8.3
Q ss_pred CCEEEECCCCC
Q ss_conf 98289701268
Q gi|254780283|r 279 PGIFAAGDVAD 289 (321)
Q Consensus 279 p~Iya~GDv~~ 289 (321)
-+||.+||.+-
T Consensus 275 GRVfLaGDAAH 285 (480)
T PRK07190 275 DRIFLAGDACH 285 (480)
T ss_pred CCEEEECCHHH
T ss_conf 94899411431
No 485
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=93.24 E-value=0.15 Score=27.69 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHHHHHCCCCCCCE-EEEECCCCCCCCC-CC-CCCCC--CCCC-CEECCCCCCC
Q ss_conf 97899986643232002322211-3320112222222-22-22222--2210-0001477664
Q gi|254780283|r 60 RGDWLMEQMRQQAENFGTKIIQD-LVVSVDLDRHPFL-VE-TQSGD--LWHA-DAVVIATGSE 116 (321)
Q Consensus 60 ~~~~l~~~~~~~~~~~~v~~~~~-~V~~i~~~~~~~~-v~-~~~g~--~~~a-~~lIiAtG~~ 116 (321)
.+..++..+++.+.+.+++++.+ .++.+..+++..+ |. ..+++ ++.+ |.||||||..
T Consensus 206 ~g~~l~~~l~~~~~~~gv~i~~~t~~~~Li~d~G~V~Gv~a~~~g~~~~i~A~kgVILATGGf 268 (552)
T PRK12844 206 NGAALIGRMLAAALAAGVPVWTNTPLTELVVEDGRVTGVVVVRDGREVLITARRGVLLNSGGF 268 (552)
T ss_pred CCHHHHHHHHHHHHHCCCCEEECCCCEEEEECCCEEEEEEEEECCEEEEEEECCEEEEECCCC
T ss_conf 748999999999987699389357213676229859999999899489998422579925872
No 486
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=93.21 E-value=0.19 Score=27.11 Aligned_cols=33 Identities=24% Similarity=0.288 Sum_probs=28.6
Q ss_pred EEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf 19999897779999999998699-5999967887
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARAML-KPVIIAGSDL 39 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~~~ 39 (321)
+|+|||+|-=|-.+|.+|++.|. +.+|+|.+..
T Consensus 1 kV~IvG~GGLG~~~a~~La~aGvg~i~lvD~D~V 34 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVV 34 (174)
T ss_pred CEEEECCCHHHHHHHHHHHHHCCCEEEEEECCCC
T ss_conf 9899876788999999999818973999989946
No 487
>PRK08013 hypothetical protein; Provisional
Probab=93.21 E-value=0.014 Score=33.67 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=9.8
Q ss_pred CCCEEEECCCCC
Q ss_conf 898289701268
Q gi|254780283|r 278 IPGIFAAGDVAD 289 (321)
Q Consensus 278 ~p~Iya~GDv~~ 289 (321)
.++|+.+||.+-
T Consensus 281 ~~rv~LiGDAAH 292 (400)
T PRK08013 281 AHRLALVGDAAH 292 (400)
T ss_pred CCCEEEEHHHHH
T ss_conf 775577322554
No 488
>PRK08223 hypothetical protein; Validated
Probab=93.15 E-value=0.27 Score=26.18 Aligned_cols=36 Identities=25% Similarity=0.209 Sum_probs=30.0
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCCC
Q ss_conf 67519999897779999999998699-5999967887
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAML-KPVIIAGSDL 39 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~~~ 39 (321)
++.+|+|||+|=-|-.+|.+|++.|. +..|+|.+..
T Consensus 26 ~~s~VlVvG~GGlGs~~a~~LAraGVG~i~lvD~D~v 62 (287)
T PRK08223 26 RNSRVAIAGLGGVGGVHLLTLARLGIGKFNIADFDVF 62 (287)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 5596899936755799999999828975999749984
No 489
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=93.09 E-value=0.014 Score=33.64 Aligned_cols=12 Identities=17% Similarity=0.155 Sum_probs=9.9
Q ss_pred CCCEEEECCCCC
Q ss_conf 898289701268
Q gi|254780283|r 278 IPGIFAAGDVAD 289 (321)
Q Consensus 278 ~p~Iya~GDv~~ 289 (321)
.++|+.+||.+-
T Consensus 277 ~~Rv~LiGDAAH 288 (386)
T PRK07494 277 ANRTALVGEAAH 288 (386)
T ss_pred CCCEEEEECHHH
T ss_conf 688278612222
No 490
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit; InterPro: IPR006275 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents glutamine-dependent CPSase (6.3.5.5 from EC) from prokaryotes and eukaryotes (CPSase II). ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=93.03 E-value=0.16 Score=27.45 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.1
Q ss_pred CCEEEEECCCH-----------HHHHHHHHHHHCCCCEEEEE
Q ss_conf 75199998977-----------79999999998699599996
Q gi|254780283|r 5 DSKILIIGSGP-----------AGYTAAIYAARAMLKPVIIA 35 (321)
Q Consensus 5 ~~dVvIIG~Gp-----------AGl~aA~~l~r~g~~v~iie 35 (321)
+++|+|||+|| ++-.|+..|+++|.++++|=
T Consensus 573 Kk~~lvlGSGp~RIGqgvEFDYc~Vh~~~aLr~~Gye~ImiN 614 (1089)
T TIGR01369 573 KKKVLVLGSGPNRIGQGVEFDYCCVHAVLALREAGYETIMIN 614 (1089)
T ss_pred CCEEEEECCCCEECCCCEEEHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 856899878451406631205678999999987299599997
No 491
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=92.99 E-value=0.016 Score=33.40 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=29.2
Q ss_pred CCCCCEEEECCCCCCC----HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4789828970126884----45678999979999999999997
Q gi|254780283|r 276 TSIPGIFAAGDVADER----YRQAITAAAMGCMAALEVEHYLS 314 (321)
Q Consensus 276 Ts~p~Iya~GDv~~~~----~~~~~~A~~~G~~Aa~~i~~yl~ 314 (321)
...+|+..+||.++.- ..-+..||.+|.+||..|.+.+.
T Consensus 266 ~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aae~i~~~~~ 308 (396)
T COG0644 266 LVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEALE 308 (396)
T ss_pred EECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 0528989998466674886557739999999999999986422
No 492
>TIGR02734 crtI_fam phytoene desaturase; InterPro: IPR014105 Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family are CrtI and are part of flavin containing amine oxidoreductase family. It is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis..
Probab=92.97 E-value=0.014 Score=33.58 Aligned_cols=90 Identities=20% Similarity=0.266 Sum_probs=58.6
Q ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH--HCCCCCCCE-
Q ss_conf 51999989777999999999869959999678877568750100787747777897899986643232--002322211-
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAE--NFGTKIIQD- 82 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~--~~~v~~~~~- 82 (321)
|-=+-||+-|. -++.+.|... +|+.. |.- || ..++ ..|++.+.+..+ ..|.++..+
T Consensus 192 Fh~l~~Gg~P~-~~S~Y~Lis~------le~~~--GV~--------fP--~GG~--~al~~am~~l~~e~~~g~~~~~~~ 250 (526)
T TIGR02734 192 FHALFVGGNPF-TSSIYALISA------LEREW--GVW--------FP--RGGT--GALVAAMAKLFEEADLGGELRLNA 250 (526)
T ss_pred CCCEECCCCCH-HHHHHHHHHH------HHHHC--CCC--------CC--CCHH--HHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 56321069831-6899999987------54426--740--------15--6538--899999999997468746997455
Q ss_pred EEEECCCCC-------C-CCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 332011222-------2-222222222222100001477664
Q gi|254780283|r 83 LVVSVDLDR-------H-PFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 83 ~V~~i~~~~-------~-~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
.|+.+...+ + ...|.+.+++.+.||.|+.+.=..
T Consensus 251 ~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ad~VvSnAD~~ 292 (526)
T TIGR02734 251 EVIRIETEGGKTVATGGRATAVHLADGERLDADAVVSNADLV 292 (526)
T ss_pred CEEEEEECCCCEEEECCEEEEEECCCCEEEEEEEEEECCCHH
T ss_conf 311446216742331652434550654033112788748756
No 493
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=92.97 E-value=0.015 Score=33.57 Aligned_cols=12 Identities=33% Similarity=0.448 Sum_probs=9.9
Q ss_pred CCCEEEECCCCC
Q ss_conf 898289701268
Q gi|254780283|r 278 IPGIFAAGDVAD 289 (321)
Q Consensus 278 ~p~Iya~GDv~~ 289 (321)
.++|+.+||.+-
T Consensus 284 ~~rv~LiGDAAH 295 (405)
T PRK05714 284 EEGLALIGDAAH 295 (405)
T ss_pred CCCCEEEHHHHH
T ss_conf 267324320553
No 494
>TIGR02028 ChlP geranylgeranyl reductase; InterPro: IPR011774 This entry represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll..
Probab=92.96 E-value=0.021 Score=32.61 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=45.5
Q ss_pred CCCCCCCCCCCC-CCHHHHHC-CC-------CEECCCCEEEECCCCCCCC-------CCEEEECCCCCCCH----HHHHH
Q ss_conf 222211123223-56567742-56-------1806997990088855478-------98289701268844----56789
Q gi|254780283|r 238 NVDGIFIAIGYK-PNTKIFRH-QL-------KMTNTNYIWTMPDSTATSI-------PGIFAAGDVADERY----RQAIT 297 (321)
Q Consensus 238 ~~D~vi~a~G~~-pn~~~~~~-~~-------~~~~~g~i~~~~~~~~Ts~-------p~Iya~GDv~~~~~----~~~~~ 297 (321)
.||+|.+++|.. -+-+-++. |. .....|.|+.+..+--=.| ..|=.+||.+++.- .-+.=
T Consensus 216 K~DHVAVGTGTvk~~K~~Ik~lQ~g~R~RA~~K~~GG~iirVEAHPIPEHPRPRRv~~RVALVGDAAG~VTkcSGEGIYF 295 (401)
T TIGR02028 216 KCDHVAVGTGTVKAAKDEIKKLQSGIRARAADKVAGGKIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYF 295 (401)
T ss_pred CCCEEEECCCEEEECCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEECCEEEEEECCCCCEEECCCCHHHH
T ss_conf 73647733531450507889998888787886604880899813477542488500120577633667535003650546
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99979999999999
Q gi|254780283|r 298 AAAMGCMAALEVEH 311 (321)
Q Consensus 298 A~~~G~~Aa~~i~~ 311 (321)
|+-+|.+.|..|.+
T Consensus 296 AAkSgR~Ca~a~~~ 309 (401)
T TIGR02028 296 AAKSGRLCAEAIVE 309 (401)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 65444568899886
No 495
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.93 E-value=0.014 Score=33.66 Aligned_cols=58 Identities=9% Similarity=0.122 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHHHHHC-CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCC
Q ss_conf 89789998664323200-2322211-33201122222222222222221000014776642
Q gi|254780283|r 59 IRGDWLMEQMRQQAENF-GTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV 117 (321)
Q Consensus 59 ~~~~~l~~~~~~~~~~~-~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~ 117 (321)
+...++.+.+.+.+.+. +++++.+ .+..+...++ ..+...++++++++.||.|-|+..
T Consensus 101 i~~~~l~~~L~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~llIgaDG~~S 160 (374)
T PRK06617 101 VKNSDFKKILLSKITNNPLITLIDNNQYQEVISHND-YSIIKFDDKQIKCNLLIICDGANS 160 (374)
T ss_pred ECCHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCC-CEEEECCCCEEEEEEEEEECCCCH
T ss_conf 213899999999996499948975751146652788-269963896785358999579851
No 496
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=92.87 E-value=0.21 Score=26.79 Aligned_cols=35 Identities=31% Similarity=0.387 Sum_probs=30.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCC
Q ss_conf 67519999897779999999998699-599996788
Q gi|254780283|r 4 HDSKILIIGSGPAGYTAAIYAARAML-KPVIIAGSD 38 (321)
Q Consensus 4 ~~~dVvIIG~GpAGl~aA~~l~r~g~-~v~iie~~~ 38 (321)
.+..|+|||+|-=|-.+|.+|+++|. +.+|+|.+.
T Consensus 23 ~~s~VlIVGaGGLGs~~a~~La~aGVG~l~ivD~D~ 58 (337)
T PRK12475 23 REKHVLIIGAGALGAANAEALVRAGIGKLTIADRDY 58 (337)
T ss_pred HCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCE
T ss_conf 639699997777789999999982898699984998
No 497
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=92.80 E-value=0.13 Score=28.11 Aligned_cols=182 Identities=19% Similarity=0.160 Sum_probs=93.5
Q ss_pred CEEEEECCCHHHHHHHHHHHHC-CCCEEEE--ECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 5199998977799999999986-9959999--678877568750100787747777897899986643232002322211
Q gi|254780283|r 6 SKILIIGSGPAGYTAAIYAARA-MLKPVII--AGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQD 82 (321)
Q Consensus 6 ~dVvIIG~GpAGl~aA~~l~r~-g~~v~ii--e~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~ 82 (321)
.-|+||||-.==+..-.+|.+. +.++.|+ |+-+ +.|.|... .++-+. ......+=++.
T Consensus 2 ~~iavIGGDaR~lE~I~~L~~~P~Ak~~l~Gf~qL~-----------~gF~G~~~----~~~~~~---~~~~~DvviLP- 62 (288)
T TIGR02853 2 IHIAVIGGDARQLELIRKLEELPDAKISLIGFDQLE-----------DGFTGVEK----LELDEL---DLSTLDVVILP- 62 (288)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCC-----------CCCCCHHH----HCCCCC---CCCCCCEEEEC-
T ss_conf 789998376137888999973779789996366300-----------23133001----013424---44466678816-
Q ss_pred EEEECCCCCCCCCCCCC-------CCCCCCCCEECCCCCCC-CEE-----------EEECCCCCCCEEECCCCCCCCCC-
Q ss_conf 33201122222222222-------22222100001477664-202-----------46527743320210121111111-
Q gi|254780283|r 83 LVVSVDLDRHPFLVETQ-------SGDLWHADAVVIATGSE-VKW-----------LRLESEKKFQGFGVSACATCDGF- 142 (321)
Q Consensus 83 ~V~~i~~~~~~~~v~~~-------~g~~~~a~~lIiAtG~~-~~~-----------~~ipG~~~~~~~~v~~~~~~d~~- 142 (321)
|.+++.++.-+++.++ +.-.-..+.+.+=||.. +.. ..+-..+.+--| +..|+.+|.
T Consensus 63 -v~G~~~~G~v~t~f~~~~~~l~~~~~~~~~~~~~~~~Gisn~yL~~l~~~a~~~Li~l~erDdvAIY--NSIPtaEGAi 139 (288)
T TIGR02853 63 -VQGVSQDGKVATVFSNEKVVLKPELLEETKKHCTIYVGISNDYLEELAAEAGVKLIELFERDDVAIY--NSIPTAEGAI 139 (288)
T ss_pred -CCCCCCCCEEEEECCCCCEEECHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCEEEE--CCCCCHHHHH
T ss_conf -7885998848741158721646689952079438997377658999998719602410035753344--5875567899
Q ss_pred ---------CCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCC-------CCCCCCCCCC-CCCCCCCCCCCE
Q ss_conf ---------11221000010255654310121013332223443433221-------1112112235-544332222311
Q gi|254780283|r 143 ---------FYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS-------EKILQEKLFL-QSNIDFLFDTEV 205 (321)
Q Consensus 143 ---------~~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~-------~~~~~~~~~~-~~~i~~~~~~~v 205 (321)
...+.++.|+|=|=+|+-.|..|+.+|.+|.+--|++...+ .|...+++.+ -.++++.+||-+
T Consensus 140 mMA~e~td~TIHgS~v~VlGfGRtG~tiAr~f~aLGA~V~V~AR~~~dlARI~E~g~~P~~~~~L~~~v~e~DIviNTiP 219 (288)
T TIGR02853 140 MMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVSVGARSSADLARITEMGLEPVPLNKLEEKVAEIDIVINTIP 219 (288)
T ss_pred HHHHHCCCCCEECCEEEEECCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEECCC
T ss_conf 99972489625013457884470568999999726980575317836789999960688271678876500024770676
Q ss_pred EECC
Q ss_conf 2114
Q gi|254780283|r 206 VDVI 209 (321)
Q Consensus 206 ~~i~ 209 (321)
--|.
T Consensus 220 aLvl 223 (288)
T TIGR02853 220 ALVL 223 (288)
T ss_pred CCCC
T ss_conf 3003
No 498
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=92.77 E-value=0.044 Score=30.76 Aligned_cols=83 Identities=20% Similarity=0.298 Sum_probs=0.0
Q ss_pred CCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCC
Q ss_conf 12210000102556543101210133322234434332211112112235544332222311211486433344444333
Q gi|254780283|r 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSG 223 (321)
Q Consensus 144 ~~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~~l~~~~~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~ 223 (321)
+.+|+|+|+|-|-+|+-+|..|.+.|.+|++...++ .+...........++++.......+
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~---~~~~~~~~~~~~~~i~~~~g~~~~~---------------- 65 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRP---APEGLAAQPLLLEGIEVELGSHDDE---------------- 65 (448)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECCCC---CCCCHHHHHHHCCCCEEECCCCCHH----------------
T ss_conf 059979999266510999999997798699983898---7653234444203722313764110----------------
Q ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 142032100000112222111232235656774
Q gi|254780283|r 224 VRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFR 256 (321)
Q Consensus 224 v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~ 256 (321)
...++|.|+.+-|..|+..++.
T Consensus 66 -----------~~~~~d~vV~SPGi~~~~p~v~ 87 (448)
T COG0771 66 -----------DLAEFDLVVKSPGIPPTHPLVE 87 (448)
T ss_pred -----------CCCCCCEEEECCCCCCCCHHHH
T ss_conf -----------0134778998999999888999
No 499
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.76 E-value=0.015 Score=33.49 Aligned_cols=52 Identities=27% Similarity=0.305 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHH-HHHCCCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 978999866432-32002322211-3320112222222222222222100001477664
Q gi|254780283|r 60 RGDWLMEQMRQQ-AENFGTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 60 ~~~~l~~~~~~~-~~~~~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
....++..+.+. +++.+++++.+ .|..++. .+|.++.| +++++.||+|+|+.
T Consensus 143 ~p~~~~~~l~~~~a~~~Gv~~~~~t~V~~i~~----~~V~T~~G-~i~a~~VVvaaG~~ 196 (365)
T TIGR03364 143 EPREAIPALAAYLAEQHGVEFHWNTAVTSVET----GTVRTSRG-DVHADQVFVCPGAD 196 (365)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEE----EEEEECCC-EEEEEEEEECCCCH
T ss_conf 99999999999999857928993128996201----48997892-89976699966840
No 500
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=92.75 E-value=0.2 Score=26.95 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=28.3
Q ss_pred CCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 22100001025565431012101333222344343
Q gi|254780283|r 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRS 179 (321)
Q Consensus 145 ~~k~v~ViGgG~~g~e~A~~L~~~~~~Vtli~r~~ 179 (321)
+-++|+|+|||..|..+|..|.+ +.+|+++++.+
T Consensus 231 ~~~~v~I~Ggg~ig~~la~~L~~-~~~v~iIe~d~ 264 (455)
T PRK09496 231 PVKRIMIAGGGNIGLYLAKLLEK-GYSVKLIERDP 264 (455)
T ss_pred CCCEEEEECCCHHHHHHHHHHHC-CCEEEEECCCH
T ss_conf 66518998786999999998740-88389970898
Done!