RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH)
protein [Candidatus Liberibacter asiaticus str. psy62]
         (321 letters)



>gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 305

 Score =  320 bits (822), Expect = 3e-88
 Identities = 155/308 (50%), Positives = 204/308 (66%), Gaps = 13/308 (4%)

Query: 7   KILIIGSGPAGYTAAIYAARAMLK-PVIIAGSDLGGQLMITESIENYPGFATSIRGDWLM 65
            ++IIG GPAG TAAIYAARA LK  +I+ G + GGQL  T  +ENYPGF   I G  LM
Sbjct: 5   DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELM 64

Query: 66  EQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESE 125
           EQM++QAE FG +I++D V  V+L+  PF V+T  G  + A AV+IATG+  + L +  E
Sbjct: 65  EQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGE 123

Query: 126 KKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEK 185
           ++F+G GVS CATCDGFF K KDV+V+GGG++A EEAL+L+KIA++VT+VHRR   R+E+
Sbjct: 124 EEFEGKGVSYCATCDGFF-KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEE 182

Query: 186 ILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIA 245
           IL E+L     I+ L +T V +++G          V GV L N K G   E  VDG+FIA
Sbjct: 183 ILVERLKKNVKIEVLTNTVVKEILGD--------DVEGVVLKNVK-GEEKELPVDGVFIA 233

Query: 246 IGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMA 305
           IG+ PNT++ +    +    YI    +   TS+PGIFAAGDVAD+  RQ  TAA  G +A
Sbjct: 234 IGHLPNTELLKGLGVLDENGYIVV-DEEMETSVPGIFAAGDVADKNGRQIATAAGDGAIA 292

Query: 306 ALEVEHYL 313
           AL  E YL
Sbjct: 293 ALSAERYL 300


>gnl|CDD|35625 KOG0404, KOG0404, KOG0404, Thioredoxin reductase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 322

 Score =  308 bits (791), Expect = 1e-84
 Identities = 146/323 (45%), Positives = 207/323 (64%), Gaps = 16/323 (4%)

Query: 1   MASHDSKILIIGSGPAGYTAAIYAARAMLKPVI-----IAGSDLGGQLMITESIENYPGF 55
             +H+  ++IIGSGPA +TAAIYAARA LKP++       G   GGQL  T  +EN+PGF
Sbjct: 4   GMTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGF 63

Query: 56  ATSIRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGS 115
              I G  LM++MR+Q+E FGT+II + V  VDL   PF + T +  +  ADAV++ATG+
Sbjct: 64  PDGITGPELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARPV-TADAVILATGA 122

Query: 116 EVKWLRL--ESEKKFQGFGVSACATCDGF--FYKNKDVIVVGGGNTAAEEALHLAKIARR 171
             K L L  E E +F   G+SACA CDG    ++NK + V+GGG++A EEAL L K A +
Sbjct: 123 SAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASK 182

Query: 172 VTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKE 231
           V I+HRR   R+ KI+Q++     NI+ L++T  V+ +G          ++G+R+ N K 
Sbjct: 183 VYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALGDGKL------LNGLRIKNVKT 236

Query: 232 GNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADER 291
           G   +  V G+F AIG+ P TK  + Q+++    YI T P ++ TS+PG+FAAGDV D++
Sbjct: 237 GEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK 296

Query: 292 YRQAITAAAMGCMAALEVEHYLS 314
           YRQA+TAA  GC+AAL+ E YL+
Sbjct: 297 YRQAVTAAGSGCIAALDAERYLT 319


>gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
           [Posttranslational modification, protein turnover,
           chaperones].
          Length = 520

 Score =  176 bits (447), Expect = 9e-45
 Identities = 91/311 (29%), Positives = 156/311 (50%), Gaps = 15/311 (4%)

Query: 8   ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQ 67
           +L++G GPAG  AAIYAAR  ++  ++A    GGQ++ T  IEN+        G  L   
Sbjct: 214 VLVVGGGPAGAAAAIYAARKGIRTGLVA-ERFGGQVLDTMGIENFIS-VPETEGPKLAAA 271

Query: 68  MRQQAENFGTKIIQDLVVSVDLDRHP-----FLVETQSGDLWHADAVVIATGSEVKWLRL 122
           +    + +   ++ +L  +  L+          VE  +G +  A  V++ATG+  + + +
Sbjct: 272 LEAHVKQYDVDVM-NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNV 330

Query: 123 ESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLR 182
             E +++  GV+ C  CDG  +K K V V+GGGN+  E A+ LA I   VT++     L+
Sbjct: 331 PGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK 390

Query: 183 SEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGI 242
           ++ +LQ+KL    N+  + + +  +V G          V+G+   ++  G      ++G+
Sbjct: 391 ADAVLQDKLRSLPNVTIITNAQTTEVKGD------GDKVTGLEYRDRVSGEEHHLELEGV 444

Query: 243 FIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMG 302
           F+ IG  PNT+  +  +++     I  +     T++PG+FAAGD     Y+Q I A   G
Sbjct: 445 FVQIGLLPNTEWLKGAVELNRRGEI-IVDARGETNVPGVFAAGDCTTVPYKQIIIAMGEG 503

Query: 303 CMAALEVEHYL 313
             A+L    YL
Sbjct: 504 AKASLSAFDYL 514


>gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
           dihydrolipoamide dehydrogenase (E3) component, and
           related enzymes [Energy production and conversion].
          Length = 454

 Score = 89.1 bits (221), Expect = 2e-18
 Identities = 80/341 (23%), Positives = 133/341 (39%), Gaps = 67/341 (19%)

Query: 8   ILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQ----------------LMITESIE 50
           +++IG+GPAGY AAI AA+  LK  ++  G  LGG                  +I E+  
Sbjct: 7   VVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARH 66

Query: 51  NYPGFATSIRGDWL-MEQMRQQAENFGTKI---IQDLVVS--VDL--------DRHPFLV 96
               +  S     +  E++  + +     +   ++ L+    VD+        D H   V
Sbjct: 67  AAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEV 126

Query: 97  ETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKN---KDVIVVG 153
             +  +   AD ++IATGS  +           G   +         +     K +++VG
Sbjct: 127 TGEDKETITADNIIIATGSRPRIP------PGPGIDGARILDSSDALFLLELPKSLVIVG 180

Query: 154 GGNTAAEEALHLAKIARRVTIVHRRSS-LRSE-----KILQEKLFLQSNIDFLFDTEVVD 207
           GG    E A   A +  +VT+V R    L  E     K L ++L  +  +  L +T+V  
Sbjct: 181 GGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQL-EKGGVKILLNTKVTA 239

Query: 208 VIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQ---LKMTNT 264
           V               V L + + G       D + +AIG KPNT     +   +++ + 
Sbjct: 240 VEKK-------DDGVLVTLEDGEGGTI---EADAVLVAIGRKPNTDGLGLENAGVELDDR 289

Query: 265 NYIWTMPDSTATSIPGIFAAGDVADER------YRQAITAA 299
            +I    D   T++PGI+A GDV            +   AA
Sbjct: 290 GFIKV-DDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAA 329



 Score = 27.5 bits (61), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL 181
           K  DV+V+G G      A+  A++  +V +V +   L
Sbjct: 3   KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL 39


>gnl|CDD|30795 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
           [General function prediction only].
          Length = 415

 Score = 75.7 bits (185), Expect = 2e-14
 Identities = 66/321 (20%), Positives = 112/321 (34%), Gaps = 34/321 (10%)

Query: 8   ILIIGSGPAGYTAAIYAARAMLK-PVIIAGSDLGGQLMITESIENYPGFATSIRGDW--L 64
           I+I+G G AG +AA    R +L   + + G +                 +  + G    L
Sbjct: 1   IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSY-------YRCPLSLYVGGGIASL 53

Query: 65  MEQMRQQAENFGTKIIQDL---VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLR 121
            +       N  T I       V S+D +    +V    G++   D +V+ATG+  +   
Sbjct: 54  EDLRYPPRFNRATGIDVRTGTEVTSIDPENK--VVLLDDGEI-EYDYLVLATGARPRPPP 110

Query: 122 LE-SEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRS- 179
           +   E               G     KDV+VVG G    E A   AK  ++VT++     
Sbjct: 111 ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADR 170

Query: 180 ---SLRSEKILQE--KLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNF 234
               L   ++ +E  +L  +  ++ L  T+VV V G          +   R+        
Sbjct: 171 LGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNT------LVVERVVGIDGE-- 222

Query: 235 FERNVDGIFIAIGYKPNTKIFRHQL--KMTNTNYIWTMPDSTATSIPGIFAAGDVADERY 292
            E   D + I  G +PN  +    L         +        +  P ++AAGDVA+   
Sbjct: 223 -EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPA 281

Query: 293 RQAITAAAMGCMAALEVEHYL 313
            +      +   A       +
Sbjct: 282 AETGKGGRIALWAIAVAAGRI 302



 Score = 39.1 bits (90), Expect = 0.002
 Identities = 50/255 (19%), Positives = 76/255 (29%), Gaps = 20/255 (7%)

Query: 7   KILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQLMITESIENYPGFATSIRGDWLM 65
            ++++G+GP G  AA  AA+   K  +I A   LGGQL+  E              + L 
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEV------------AEELA 185

Query: 66  EQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESE 125
           E + +             V           V    G+   AD V+I  G E   + L ++
Sbjct: 186 ELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPG-ERPNVVLAND 244

Query: 126 KKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIAR--RVTIVHRRSSLRS 183
                         D     +KD  V   G+ A   A    K  R     I      + +
Sbjct: 245 ALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAA 304

Query: 184 EKILQEKLF---LQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVD 240
           E I         L + I  + D       G          V  V    K          +
Sbjct: 305 ENIAGALRIPGLLGTVISDVGDLCAAST-GLTEGKERGIDVVLVVSGGKDPRAHLYPGAE 363

Query: 241 GIFIAIGYKPNTKIF 255
            + I +    +T   
Sbjct: 364 LVGIKLVGDADTGRI 378


>gnl|CDD|36550 KOG1336, KOG1336, KOG1336, Monodehydroascorbate/ferredoxin
           reductase [General function prediction only].
          Length = 478

 Score = 71.9 bits (176), Expect = 2e-13
 Identities = 66/304 (21%), Positives = 106/304 (34%), Gaps = 31/304 (10%)

Query: 1   MASHDSKILIIGSGPAGYTAAIY--AARAMLKPVIIAGSDLGGQLMITESIENYPGFATS 58
                   +I+G GP G  A           +  ++    L     +         F  +
Sbjct: 70  AGYAARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYL-----LPYDRARLSKFLLT 124

Query: 59  IRGDWLMEQMRQQAENFGTKII-QDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV 117
           +    L ++  +  +  G ++I    VV  DL      +   +G+      ++IATGS  
Sbjct: 125 VGEG-LAKRTPEFYKEKGIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGSSA 181

Query: 118 KWLRL---ESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTI 174
           K L +   E +  F    +               V+ VGGG    E A  L   A+ VT+
Sbjct: 182 KTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTV 241

Query: 175 VHRRS----SLRSEKILQ--EKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHN 228
           V         L    I Q  E  +    + F   T V  + G+         VS V+L +
Sbjct: 242 VFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDG-----EVSEVKLKD 296

Query: 229 KKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVA 288
            K         D + + IG KPNT      + + +   I    +   TS+P ++A GDVA
Sbjct: 297 GK-----TLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKV-DEFFQTSVPNVYAIGDVA 350

Query: 289 DERY 292
               
Sbjct: 351 TFPL 354


>gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
           [Inorganic ion transport and metabolism].
          Length = 443

 Score = 68.6 bits (167), Expect = 2e-12
 Identities = 56/319 (17%), Positives = 104/319 (32%), Gaps = 38/319 (11%)

Query: 1   MASHDSKILIIGSGPAGYTAAIYAARAMLKPVII--AGSDLGGQL------MIT------ 46
             +  + + IIG+G +G  AA    +A +   +I     D+GG         +       
Sbjct: 4   GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKW 63

Query: 47  ---------ESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDL-VVSVDLDRHPFLV 96
                       E +  FA  I+ D++ + + +    F  +    + V   D D   + V
Sbjct: 64  LLGFPFLPFRWDEAFAPFA-EIK-DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTV 121

Query: 97  ETQSG--DLWHADAVVIATG--SEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVV 152
            T  G      AD VV+ATG  SE          +F+G  + +    +    + K V+V+
Sbjct: 122 TTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVI 181

Query: 153 GGGNTAAEEALHLAKIARRVTIVHRRSSL-----RSEKILQEKLFLQSNIDFLFDTEVVD 207
           G G +A + A  LA++   VT+  R            + +  +L L+  +   +      
Sbjct: 182 GAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWALRRGR 241

Query: 208 VI-GSIPEPPLFPSVSGVRLH-NKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTN 265
           V+   +P     P+                   V    +     P+      +L      
Sbjct: 242 VLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDL 301

Query: 266 YIWTMPDSTATSIPGIFAA 284
           +           +  I   
Sbjct: 302 FE-AGASGDVEVVTEIIDR 319


>gnl|CDD|30839 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
           related oxidoreductases [Amino acid transport and
           metabolism / General function prediction only].
          Length = 457

 Score = 68.0 bits (166), Expect = 3e-12
 Identities = 77/347 (22%), Positives = 124/347 (35%), Gaps = 61/347 (17%)

Query: 7   KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLME 66
           K+ +IG+GPAG  AA   +RA     +     L G L++   I ++      +  D  +E
Sbjct: 125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY-GIPDFKLPKDIL--DRRLE 181

Query: 67  QMRQQAENF--GTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV-KWLRLE 123
            + +    F    ++ +D+ +   L  +              DAV +ATG+   + L + 
Sbjct: 182 LLERSGVEFKLNVRVGRDITLEELLKEY--------------DAVFLATGAGKPRPLDIP 227

Query: 124 SE------------KKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKI--A 169
            E             +     +   A       K K V+V+GGG+TA  +    A    A
Sbjct: 228 GEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAM-DCAGTALRLGA 286

Query: 170 RRVTIVHRR------------------SSLRSEKILQEKLFLQSNIDFLFDTE--VVDVI 209
           + VT  +R                    S   E +  E+L       F+ +    V  V 
Sbjct: 287 KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGV--ERLPFVQPKAFIGNEGGRVTGVK 344

Query: 210 GSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF---RHQLKMTNTNY 266
               EP  +    G R      G       D + +AIG++ +          LK+     
Sbjct: 345 FGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGR 404

Query: 267 IWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYL 313
           I    +   TSIPG+FA GD         + A A G  AA  ++  L
Sbjct: 405 IKVDENLQQTSIPGVFAGGDAVRGA-ALVVWAIAEGREAAKAIDKEL 450


>gnl|CDD|36613 KOG1399, KOG1399, KOG1399, Flavin-containing monooxygenase
           [Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 448

 Score = 58.5 bits (141), Expect = 2e-09
 Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 47/244 (19%)

Query: 7   KILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQLMITESIEN-------------- 51
            + +IG+GPAG  AA    R   + V+     D+GG    TE++E               
Sbjct: 8   DVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLP 67

Query: 52  -----YPGFATSIRGDWLM-------EQMRQQAENFG-TKIIQDLVVSVDLDRHP---FL 95
                Y  F    R            E +R  A++F   K+I      V +D      + 
Sbjct: 68  KEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWR 127

Query: 96  VETQSGDLWH----ADAVVIATG-------SEVKWLRLESEKKFQGFGVSACATCDGFFY 144
           V T+           DAVV+ TG        ++    +ES   F+G  + +        +
Sbjct: 128 VTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIES---FKGKIIHSHDYKSPEKF 184

Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEK--ILQEKLFLQSNIDFLFD 202
           ++K V+VVG GN+  + +L L ++A+ V +      +  E   IL E L+   +I    +
Sbjct: 185 RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEILGENLWQVPSIKSFTE 244

Query: 203 TEVV 206
              V
Sbjct: 245 DGSV 248


>gnl|CDD|143852 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
           oxidoreductase.  This family includes both class I and
           class II oxidoreductases and also NADH oxidases and
           peroxidases. This domain is actually a small NADH
           binding domain within a larger FAD binding domain.
          Length = 82

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 14/89 (15%)

Query: 149 VIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS------EKILQEKLFLQSNIDFLFD 202
           V+VVGGG    E A  LAK+  +VT+V RR  L         KILQEKL  ++ I+ L +
Sbjct: 2   VVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLE-KNGIEVLLN 60

Query: 203 TEVVDVIGSIPEPPLFPSVSGVRLHNKKE 231
           T V ++ G+            V L     
Sbjct: 61  TTVEEIEGN-------GDGVLVVLETGDG 82


>gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy
           production and conversion].
          Length = 506

 Score = 54.5 bits (131), Expect = 4e-08
 Identities = 69/334 (20%), Positives = 117/334 (35%), Gaps = 68/334 (20%)

Query: 4   HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG--------------------Q 42
           +D  +++IG GP GY AAI AA+  LK   +     LGG                     
Sbjct: 38  NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYH 97

Query: 43  LMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDLVVSVD-------------L 89
               E   +     +S+  D  ++ M +  +N   ++   +                  L
Sbjct: 98  EAQHEDFASRGIDVSSVSLD--LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFL 155

Query: 90  DRHPFLVETQSGDLWHADA--VVIATGSEVKWLRLESEKKFQGFGV--SACATCDGFF-- 143
           D +   V+   G+     A  ++IATGSEV          F G  +      +  G    
Sbjct: 156 DPNKVSVKKIDGEDQIIKAKNIIIATGSEV--------TPFPGITIDEKKIVSSTGALSL 207

Query: 144 -YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL------RSEKILQEKLFLQSN 196
               K + V+G G    E     +++   VT+V     +         K  Q  L  Q  
Sbjct: 208 KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQG- 266

Query: 197 IDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTK--- 253
           I F   T+V     +   P        + + N K G       D + ++IG +P T+   
Sbjct: 267 IKFKLGTKVTSATRNGDGPVE------IEVENAKTGKKETLECDVLLVSIGRRPFTEGLG 320

Query: 254 IFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV 287
           + +  +++     +  +     T +P I+A GDV
Sbjct: 321 LEKIGIELDKRGRV-IVNTRFQTKVPHIYAIGDV 353


>gnl|CDD|39914 KOG4716, KOG4716, KOG4716, Thioredoxin reductase [Posttranslational
           modification, protein turnover, chaperones].
          Length = 503

 Score = 49.2 bits (117), Expect = 1e-06
 Identities = 80/350 (22%), Positives = 129/350 (36%), Gaps = 83/350 (23%)

Query: 3   SHDSKILIIGSGPAGYT----AAIYAARAML----KPVIIAGS-DLGG----------QL 43
           S+D  +++IG G  G      AA   A+       KP     S  LGG          +L
Sbjct: 17  SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKL 76

Query: 44  M-----ITESIENYPGFA-----TSIRGDW--LME--QMRQQAENFGTKII--QDLVVSV 87
           M     + E++ +   +        I+ DW  L++  Q   ++ N+G ++   +  V  +
Sbjct: 77  MHQAALLGEALHDARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYI 136

Query: 88  D-----LDRHPFLVETQSG--DLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCD 140
           +     +D H      + G      A+  VIATG   ++  +   K++         T D
Sbjct: 137 NSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYPDIPGAKEY-------GITSD 189

Query: 141 GFF---YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLR------SEKILQEKL 191
             F   Y+    +VVG G  A E A  L      VT++ R   LR      +E +   + 
Sbjct: 190 DLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVA--EH 247

Query: 192 FLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPN 251
             +  I FL  T    V   I +  L      V   N   G   E   D +  AIG K  
Sbjct: 248 MEERGIKFLRKTVPERV-EQIDDGKLR-----VFYKNTNTGEEGEEEYDTVLWAIGRKAL 301

Query: 252 T----------KIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADER 291
           T          K      K+          D  AT++P ++A GD+ +++
Sbjct: 302 TDDLNLDNAGVKTNEKSGKIPVD-------DEEATNVPYVYAVGDILEDK 344


>gnl|CDD|31443 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
           conversion].
          Length = 793

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 68/302 (22%), Positives = 117/302 (38%), Gaps = 41/302 (13%)

Query: 7   KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENY--PGFATSIRGDWL 64
           K++IIG+G AG          +L+    A       +   E   NY     ++ + G+  
Sbjct: 5   KLVIIGNGMAG----HRTIEELLE---SAPDLYDITVFGEEPRPNYNRILLSSVLAGEKT 57

Query: 65  MEQMRQQAENFGTK-----IIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119
            E +     ++  +        + V+ +D      +V T +G     D ++IATGS    
Sbjct: 58  AEDISLNRNDWYEENGITLYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATGSYPFI 115

Query: 120 LRLESEKKFQGFGVSACATCDGFF--YKNKD-VIVVGGGNTAAEEALHLAKIARRVTIVH 176
           L +        F        +      +NK   +V+GGG    E A  L  +   VT+VH
Sbjct: 116 LPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVH 175

Query: 177 RRSSLRSEKI-------LQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNK 229
              +L   ++       L+ KL     I  L +    +++G          V GVR    
Sbjct: 176 IAPTLMERQLDRTAGRLLRRKL-EDLGIKVLLEKNTEEIVGE-------DKVEGVRF--- 224

Query: 230 KEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVAD 289
            +G   E   D + +A+G +PN ++ +      N   +  + D   TS P I+A G+ A+
Sbjct: 225 ADGT--EIPADLVVMAVGIRPNDELAKEAGLAVNRGIV--VNDYMQTSDPDIYAVGECAE 280

Query: 290 ER 291
            R
Sbjct: 281 HR 282


>gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
           production and conversion].
          Length = 405

 Score = 47.1 bits (112), Expect = 6e-06
 Identities = 68/336 (20%), Positives = 108/336 (32%), Gaps = 59/336 (17%)

Query: 1   MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIR 60
           M     +I+I+G G  G +AA   AR +    I         L            AT   
Sbjct: 1   MMKK--RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPL----LYEVATGTL 54

Query: 61  GDW-LMEQMRQQAENFG-TKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVK 118
            +  +   +R      G  + +Q  V  +D D     V          D +V+A GSE  
Sbjct: 55  SESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAK--KVTLADLGEISYDYLVVALGSETN 112

Query: 119 WLR-------------LESEKKFQGFGVSACATCDGFFYKNK--DVIVVGGGNTAAEEAL 163
           +               LE   + +   + A               +++VGGG T  E A 
Sbjct: 113 YFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAG 172

Query: 164 HLAKIAR-------------RVTIVHRRSSL---RSEKILQ--EKLFLQSNIDFLFDTEV 205
            LA+                RV +V     +      K+ +  E+   +  ++ L  T V
Sbjct: 173 ELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPV 232

Query: 206 VDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTN-T 264
            +V      P       GV L + +E    E   D +  A G + +  +       T+  
Sbjct: 233 TEV-----TP------DGVTLKDGEE----EIPADTVVWAAGVRASPLLKDLSGLETDRR 277

Query: 265 NYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAA 300
             +   P       P IFAAGD A     + +   A
Sbjct: 278 GRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTA 313


>gnl|CDD|35626 KOG0405, KOG0405, KOG0405, Pyridine nucleotide-disulphide
           oxidoreductase [Secondary metabolites biosynthesis,
           transport and catabolism].
          Length = 478

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 31/211 (14%)

Query: 106 ADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFF---YKNKDVIVVGGGNTAAEEA 162
           A  ++IATG       +         G       DGFF    + K V+VVG G  A E A
Sbjct: 154 AKHILIATGGRPIIPNIP--------GAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFA 205

Query: 163 LHLAKIARRVTIVHRRSS-LRS-EKILQEKL---FLQSNIDFLFDTEVVDVIGSIPEPPL 217
              A +     +  R+   LR  ++++ + +        I+   ++ V  VI +     L
Sbjct: 206 GIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL 265

Query: 218 FPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQ---LKMTNTNYIWTMPDST 274
             +  G              +VD +  AIG KPNTK    +   +K      I  + +  
Sbjct: 266 VITSHGT-----------IEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAI-IVDEYQ 313

Query: 275 ATSIPGIFAAGDVADERYRQAITAAAMGCMA 305
            T++P I+A GDV  +     +  AA   +A
Sbjct: 314 NTNVPSIWAVGDVTGKINLTPVAIAAGRKLA 344


>gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function
           prediction only].
          Length = 408

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 58/163 (35%)

Query: 7   KILIIGSGPAGYTAAIYAARA------------MLKPVIIAGSDLGGQLMITES------ 48
            ++IIG GPAG  AAI AA+A            + + ++++G   GG+   T S      
Sbjct: 5   DVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSG---GGRCNFTNSEAPDEF 61

Query: 49  IENYPGFATSIRG-----------DW-------------------------LMEQMRQQA 72
           +   PG    ++            DW                         +++ + ++ 
Sbjct: 62  LSRNPGNGHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKEL 121

Query: 73  ENFGTKII-QDLVVSVDLDRHPFLVETQSGDLWHADAVVIATG 114
           E  G  I  +  V SV+ D   F ++T SG+    D++++ATG
Sbjct: 122 EALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164



 Score = 27.1 bits (60), Expect = 7.7
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKIL 187
           +  DVI++GGG      A+  AK  RRV ++ +   L   KIL
Sbjct: 2   ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKL-GRKIL 43


>gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
           and conversion].
          Length = 396

 Score = 38.6 bits (89), Expect = 0.002
 Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 47/195 (24%)

Query: 8   ILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLG-----GQLMITESIENY-----PGFA 56
           ++I+G+GPAG +AA   A+A L  +++  GS+ G     G  +   ++E           
Sbjct: 6   VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIE 65

Query: 57  TSIRGDWLM------------------------EQMRQQAENFGTKIIQDLVVSVDL--D 90
             + G  +                         + + ++AE  G ++     V+  +  D
Sbjct: 66  RKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED 125

Query: 91  RHPFLVETQSGDLWHADAVVIATGSE---VKWLRLESEKK-------FQGFGVSACATCD 140
               +      D   A  V+ A G      + L L+  K         +   V      +
Sbjct: 126 DGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVE 185

Query: 141 GFFYKNKDVIVVGGG 155
            F Y   DV   G G
Sbjct: 186 EFLYGPLDVGPGGYG 200



 Score = 32.8 bits (74), Expect = 0.12
 Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVD 207
           DV++VG G   +  A  LAK    V ++ + S   ++      L              ++
Sbjct: 5   DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGL----------SPRALE 54

Query: 208 VIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFI 244
            +    +  +   V+G R++   E    E  V   +I
Sbjct: 55  ELIPDFDEEIERKVTGARIYFPGEKVAIEVPVGEGYI 91


>gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis
          [Coenzyme metabolism].
          Length = 262

 Score = 37.5 bits (87), Expect = 0.005
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 7/47 (14%)

Query: 5  DSKILIIGSGPAGYTAAIYAARAMLKPVII-------AGSDLGGQLM 44
          +S ++I+G+GP+G TAA Y A+A LK  I         G   GG L 
Sbjct: 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLF 76



 Score = 30.6 bits (69), Expect = 0.59
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL 181
           Y   DVI+VG G +    A +LAK   +V I  R+ S 
Sbjct: 28  YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF 65


>gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain.  This family
          includes members that bind FAD. This family includes
          the flavoprotein subunits from succinate and fumarate
          dehydrogenase, aspartate oxidase and the alpha subunit
          of adenylylsulphate reductase.
          Length = 401

 Score = 37.3 bits (87), Expect = 0.005
 Identities = 14/34 (41%), Positives = 20/34 (58%)

Query: 8  ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
          +++IGSG AG  AA+ AA A LK  ++      G
Sbjct: 2  VVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFG 35


>gnl|CDD|145231 pfam01946, Thi4, Thi4 family.  This family includes a putative
          thiamine biosynthetic enzyme.
          Length = 229

 Score = 37.4 bits (87), Expect = 0.006
 Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 7/46 (15%)

Query: 5  DSKILIIGSGPAGYTAAIYAARAMLKPVII-------AGSDLGGQL 43
          +S ++I+G+GP+G TAA Y A+  LK  II        G+  GG L
Sbjct: 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWGGGML 62



 Score = 26.6 bits (59), Expect = 8.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)

Query: 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180
           Y   DV++VG G +    A +LAK   +V I+ R  S
Sbjct: 15  YAESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLS 51


>gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A. 
          Length = 391

 Score = 37.1 bits (87), Expect = 0.007
 Identities = 39/154 (25%), Positives = 55/154 (35%), Gaps = 49/154 (31%)

Query: 7   KILIIGSGPAGYTAAIYAARAMLKPVIIA---------------GSD-----------LG 40
            +++IG G AG  AA+ AAR   K ++I                G             LG
Sbjct: 1   DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGGIAKGHLVREIDALG 60

Query: 41  GQLM-------ITESIENYP-GFATSIRGDWLMEQ---------MRQQAENF-GTKIIQD 82
           G +        I   + N   G A       L  Q         M +  EN     +IQ 
Sbjct: 61  GLMGKAADKTGIQFRMLNTSKGPA----VRALRAQVDRDLYSKEMTETLENHPNLTLIQG 116

Query: 83  LVVSVDLDRHPFL-VETQSGDLWHADAVVIATGS 115
            V  +  +      V T+ G+ + A AVVIATG+
Sbjct: 117 EVTDLIPENGKVKGVVTEDGEEYKAKAVVIATGT 150



 Score = 27.5 bits (62), Expect = 4.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)

Query: 148 DVIVVGGGNTAAEEALHLAK 167
           DVIV+GGG+   E AL  A+
Sbjct: 1   DVIVIGGGHAGCEAALAAAR 20


>gnl|CDD|35620 KOG0399, KOG0399, KOG0399, Glutamate synthase [Amino acid transport
            and metabolism].
          Length = 2142

 Score = 36.5 bits (84), Expect = 0.011
 Identities = 74/336 (22%), Positives = 111/336 (33%), Gaps = 85/336 (25%)

Query: 7    KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLM 65
            ++ IIGSGPAG  AA    +A     +   SD +GG LM          F    R    +
Sbjct: 1787 RVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRR----V 1842

Query: 66   EQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV-------- 117
            + + Q+   F T       VS+D      L +         DA+V+ATGS          
Sbjct: 1843 DLLEQEGIRFVTNTEIGKHVSLD-----ELKKEN-------DAIVLATGSTTPRDLPVPG 1890

Query: 118  --------------KWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTA----A 159
                          K  +   +    G  +SA         K K VIV+GGG+T      
Sbjct: 1891 RDLKGVHFAMEFLEKNTKSLLDSVLDGNYISA---------KGKKVIVIGGGDTGTDCIG 1941

Query: 160  EEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFP 219
                H  K      ++ +    R+      +      +D+    E  +  GS P      
Sbjct: 1942 TSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDY-GHAEAKEHYGSDPRTY--- 1997

Query: 220  SVSGVRLHNKKEGNF---------FERNVDGIFIAIGYKPNTKIF--------------- 255
            SV   R      GN          +E++  G +       + +I                
Sbjct: 1998 SVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPE 2057

Query: 256  -----RHQLKMTNTNYIWTMPDSTATSIPGIFAAGD 286
                 +  LK    + I T  DS +T +  +FAAGD
Sbjct: 2058 KSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGD 2093


>gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
          flavoprotein subunit [Energy production and
          conversion].
          Length = 562

 Score = 36.1 bits (83), Expect = 0.012
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 1  MASHDSKILIIGSGPAGYTAAIYAARAMLKPVII 34
          M  H+  +++IG G AG  AAI AA A LK  ++
Sbjct: 2  MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALL 35



 Score = 28.0 bits (62), Expect = 3.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 266 YIWTMPDSTATSIPGIFAAGDVA 288
            I T      T IPG+FAAG+ A
Sbjct: 357 GIPTNTGRVETKIPGLFAAGEAA 379



 Score = 27.2 bits (60), Expect = 5.8
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS 183
           DV+V+GGG      A+  A+   +V ++ +    R 
Sbjct: 8   DVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43


>gnl|CDD|33289 COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary
           metabolites biosynthesis, transport, and catabolism].
          Length = 436

 Score = 35.2 bits (81), Expect = 0.023
 Identities = 41/257 (15%), Positives = 78/257 (30%), Gaps = 61/257 (23%)

Query: 63  WLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWL-- 120
           W   Q+      FG ++     +  D     F V T +G ++ A  +V+  G+   ++  
Sbjct: 106 WAASQLPSL--RFGEEVTDISSLDGDAVVRLF-VVTANGTVYRARNLVLGVGT-QPYIPP 161

Query: 121 RLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHL-----------AKIA 169
              S    + F  S          + + V V+G G +AAE  L L             I 
Sbjct: 162 CFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWIT 221

Query: 170 RR--------------------VTIVHRRSSLRSEKILQEKLFLQSNIDF-----LFDTE 204
           R                         +       +++L+++  L   I F     ++D  
Sbjct: 222 RSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLL 281

Query: 205 VVDVIGSIPEPP--LFPSVSGVRLHNKKEGNF------------FERNVDGIFIAIGYKP 250
               +G   +P   L        +    +G +                 D + +A GY+ 
Sbjct: 282 YEQSLG-GRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRR 340

Query: 251 NTKIF----RHQLKMTN 263
               F      +L+  +
Sbjct: 341 AVPSFLEGLADRLQWDD 357


>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like.  This
           family includes FMO proteins and cyclohexanone
           monooxygenase.
          Length = 532

 Score = 35.2 bits (81), Expect = 0.024
 Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 55/222 (24%)

Query: 7   KILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIE--------------- 50
           K+ +IG+G +G ++        L+P     S D+GG    TE +E               
Sbjct: 3   KVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSS 62

Query: 51  -------------NYPGFATSIRGDWLMEQMRQQAENFGT-KIIQDLVVSVDLDRHPFLV 96
                        +YP F   +     +E +R  A++F   K IQ       + + P   
Sbjct: 63  KEMSCFSDFPFPEDYPNF---MHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFS 119

Query: 97  ET------------QSGDLWHADAVVIATGSEVK-WLRLES---EKKFQG--FGVSACAT 138
            +            Q   ++  DAV++ TG      L LES     KF+G  F       
Sbjct: 120 TSGQWEVVTEHEGKQESAVF--DAVMVCTGHHTNPHLPLESFPGINKFKGQYFHSRDYKH 177

Query: 139 CDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180
            +GF  + K V+V+G GN+  + A+ L++ A +V +  R  S
Sbjct: 178 PEGF--QGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGS 217


>gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins
          [Secondary metabolites biosynthesis, transport, and
          catabolism].
          Length = 487

 Score = 35.1 bits (80), Expect = 0.030
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 7  KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENY 52
           +++IG+G  G  AA   ARA LK  ++  +D  G    T  ++ +
Sbjct: 5  DVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGF 50



 Score = 32.0 bits (72), Expect = 0.23
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRS 179
              DV+V+G G      A  LA+   +VT++ +  
Sbjct: 2   PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36


>gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase.  This family includes
           various FAD dependent oxidoreductases:
           Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
           Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
           oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
          Length = 309

 Score = 34.7 bits (80), Expect = 0.032
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 64  LMEQMRQQAENFGTKIIQDL-VVSVDLDRHPFLVETQSGDLWHADAVVIATG 114
           L+  + + AE  G +I++   V  ++ +     VET  G++  AD VV A G
Sbjct: 149 LLRALARAAEALGVEILEGTEVTGLEREGGGVTVETADGEI-RADKVVNAAG 199



 Score = 29.3 bits (66), Expect = 1.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRR 178
           DV+V+GGG      A  LA+    VT++ R 
Sbjct: 1   DVVVIGGGIVGLSTAYELARRGLSVTLLERG 31



 Score = 29.3 bits (66), Expect = 1.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 7  KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
           +++IG G  G + A   AR  L   ++   DL  
Sbjct: 1  DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLAS 35


>gnl|CDD|37011 KOG1800, KOG1800, KOG1800, Ferredoxin/adrenodoxin reductase
           [Nucleotide transport and metabolism].
          Length = 468

 Score = 34.6 bits (79), Expect = 0.034
 Identities = 57/256 (22%), Positives = 85/256 (33%), Gaps = 60/256 (23%)

Query: 2   ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYP-GFATSIR 60
            S   ++ I+GSGPAG+    Y A+ +LK    A  D+          E  P  F     
Sbjct: 17  QSSTPRVCIVGSGPAGF----YTAQHLLKRHPNAHVDI---------FEKLPVPFGLVRY 63

Query: 61  GDWLMEQMRQQAENFGTKIIQD----LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116
           G        +   N  TK  +        +V + R   L E         DAVV+A G++
Sbjct: 64  GVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRDVSLKELTDN----YDAVVLAYGAD 119

Query: 117 VKWLRLE----------SEKKFQG-FGVSACATCDGFFYKNKDVIVVGGGNTA------- 158
               RL+          S ++F G +               + V++VG GN A       
Sbjct: 120 -GDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARIL 178

Query: 159 -------------AEEALHLAKIA--RRVTIVHRRSSLRSE---KILQEKLFLQSNIDFL 200
                         + AL+L K +  + V +V RR  L+     K L+E L L       
Sbjct: 179 LSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLEL-PGARPR 237

Query: 201 FDTEVVDVIGSIPEPP 216
            D              
Sbjct: 238 LDPVDFSGKWMDESET 253


>gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
          related FAD-dependent oxidoreductases [Coenzyme
          metabolism / Energy production and conversion].
          Length = 387

 Score = 34.3 bits (78), Expect = 0.045
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 4  HDSKILIIGSGPAGYTAAIYAARAMLKPVII 34
              + I+G+GPAG   A+  ARA L   ++
Sbjct: 1  KMLDVAIVGAGPAGLALALALARAGLDVTLL 31



 Score = 30.8 bits (69), Expect = 0.48
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180
           K  DV +VG G      AL LA+    VT++ R   
Sbjct: 1   KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPR 36


>gnl|CDD|113586 pfam04820, Trp_halogenase, Tryptophan halogenase.  Tryptophan
          halogenase catalyses the chlorination of tryptophan to
          form 7-chlorotryptophan. This is the first step in the
          biosynthesis of pyrrolnitrin, an antibiotic with
          broad-spectrum anti-fungal activity. Tryptophan
          halogenase is NADH-dependent.
          Length = 457

 Score = 34.2 bits (79), Expect = 0.052
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 7  KILIIGSGPAGYTAAIYAARAMLKPVII 34
          KI+I+G G AG+ AA   ARA+   + +
Sbjct: 1  KIVIVGGGTAGWMAAAALARALKGGLDV 28


>gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
           polyferredoxins [Energy production and conversion].
          Length = 622

 Score = 33.0 bits (75), Expect = 0.11
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 5   DSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-SDLGGQLM 44
              +L+IG G AG TAA+  A    K  ++     +GG++ 
Sbjct: 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA 164



 Score = 32.6 bits (74), Expect = 0.13
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 18/85 (21%)

Query: 146 NKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLF------------- 192
           +K V+V+GGG      AL LA +  +V +V +  S+        K F             
Sbjct: 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPK 183

Query: 193 -----LQSNIDFLFDTEVVDVIGSI 212
                   NI+ +   EV +V GS+
Sbjct: 184 MVEVSNHPNIELITYAEVEEVSGSV 208


>gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase precursor
           [Amino acid transport and metabolism].
          Length = 856

 Score = 33.0 bits (75), Expect = 0.11
 Identities = 15/36 (41%), Positives = 21/36 (58%)

Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS 183
           DV+V+GGG+     A HLAK   +  ++  RS L S
Sbjct: 41  DVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTS 76


>gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein. 
          Length = 405

 Score = 32.5 bits (75), Expect = 0.15
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 16/67 (23%)

Query: 7  KILIIGSGPAGYTAAIYAARA------------MLKPVIIAGSDLGGQLMITESIENYPG 54
           +++IG G AG  AAI AA+             + + ++I+G   GG+  +T S+E    
Sbjct: 2  DVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISG---GGRCNVTNSVE-PDN 57

Query: 55 FATSIRG 61
          F +   G
Sbjct: 58 FLSRYPG 64


>gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
           acid transport and metabolism].
          Length = 387

 Score = 32.6 bits (73), Expect = 0.15
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRR 178
              DV+++GGG      A +LA+    VT++   
Sbjct: 3   MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAG 36



 Score = 29.5 bits (65), Expect = 1.3
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 7  KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
           ++IIG G  G +AA Y A       ++   + GG
Sbjct: 6  DVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40



 Score = 27.6 bits (60), Expect = 5.0
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 64  LMEQMRQQAENFGTKII--QDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGS 115
           L   +   AE  G  II     V S++ D     VET  G +  AD VV+A G+
Sbjct: 158 LTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGTI-EADKVVLAAGA 210


>gnl|CDD|37644 KOG2433, KOG2433, KOG2433, Uncharacterized conserved protein
           [Function unknown].
          Length = 577

 Score = 32.3 bits (73), Expect = 0.16
 Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 7/107 (6%)

Query: 175 VHRRSSLRSEKILQEKLFLQSNIDFLFDTEV-VDVIGSIPEPPLFPSVSGVRLHNKKEGN 233
           V       +E + + + FL+S++  L +    +++ G +P    F      R+   +  +
Sbjct: 70  VIHVLFAYAEDLTENRQFLESSLSALIELRGNLNIDGILPGGQ-FTLQLTSRMLENRSIS 128

Query: 234 FFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPG 280
            F        +   +     +      ++   Y W+ P     S  G
Sbjct: 129 EFLC-----DLNTMFNNEHVLMEGASCVSRVGYEWSRPQEDIKSAAG 170


>gnl|CDD|39055 KOG3851, KOG3851, KOG3851, Sulfide:quinone
           oxidoreductase/flavo-binding protein [Energy production
           and conversion].
          Length = 446

 Score = 32.3 bits (73), Expect = 0.17
 Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 18/119 (15%)

Query: 2   ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENY---PGFATS 58
           A    K+L++G G  G   A    R +            G + I E  E++   PGF   
Sbjct: 36  ARKHFKVLVVGGGSGGIGMAAKFYRKLGS----------GSVGIVEPAEDHYYQPGFTLV 85

Query: 59  IRGDWLMEQMRQQAENF---GTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATG 114
             G   ++  R++  +    G   I++ V   + D++   V T+ G+    D +VIA G
Sbjct: 86  GGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNPDKNT--VVTRGGEEISYDYLVIAMG 142


>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           The medium chain reductase/dehydrogenases
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases  (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH) , quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones. ADH-like proteins
           typically form dimers (typically higher plants, mammals)
           or tetramers (yeast, bacteria), and generally have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site and a structural zinc in a lobe of
           the catalytic domain. The active site zinc is
           coordinated by a histidine, two cysteines, and a water
           molecule. The second zinc seems to play a structural
           role, affects subunit interactions, and is typically
           coordinated by 4 cysteines. Other MDR members have only
           a catalytic zinc, and some contain no coordinated zinc.
          Length = 271

 Score = 31.9 bits (73), Expect = 0.23
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 5   DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38
              +L++G+G  G   A   A+A    VI+    
Sbjct: 135 GDTVLVLGAGGVG-LLAAQLAKAAGARVIVTDRS 167


>gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in cell
           division [Cell division and chromosome partitioning].
          Length = 621

 Score = 31.7 bits (72), Expect = 0.30
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 66  EQMRQQAENF-GTKIIQDLVVSVDLDRHPFL--VETQSGDLWHADAVVIATGS 115
             M+ + EN     ++Q  V  + ++    +  V T  G  +HA AVV+ TG+
Sbjct: 104 RAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156



 Score = 28.6 bits (64), Expect = 2.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 143 FYKNKDVIVVGGGNTAAEEALHLAKIARRVTIV 175
             K  DVIV+GGG+   E AL  A++  +  ++
Sbjct: 1   MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33


>gnl|CDD|36512 KOG1298, KOG1298, KOG1298, Squalene monooxygenase [Lipid transport
           and metabolism].
          Length = 509

 Score = 31.4 bits (71), Expect = 0.31
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHR 177
           DVI+VG G   +  A  LAK  RRV ++ R
Sbjct: 47  DVIIVGAGVAGSALAYALAKDGRRVHVIER 76


>gnl|CDD|31834 COG1648, CysG, Siroheme synthase (precorrin-2
           oxidase/ferrochelatase domain) [Coenzyme metabolism].
          Length = 210

 Score = 31.4 bits (71), Expect = 0.33
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)

Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKL--FLQSNIDFLFD 202
           + K V+VVGGG+ A  +A  L K    VT+V        + +++E    +++   D    
Sbjct: 11  EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL 70

Query: 203 TEVVDVIGSIPEPPL 217
            +   VI +  +  L
Sbjct: 71  DDAFLVIAATDDEEL 85


>gnl|CDD|33910 COG4168, SapB, ABC-type antimicrobial peptide transport system,
           permease component [Defense mechanisms].
          Length = 321

 Score = 31.4 bits (71), Expect = 0.34
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 8/51 (15%)

Query: 42  QLMITESIENYPGFATSIRGDWLMEQMRQQAEN---FGTKIIQDLVVSVDL 89
             MITES+  +PG      G WL+  +RQQ       G  +I  LV+ V++
Sbjct: 255 LAMITESVFGWPGI-----GRWLINAIRQQDYASISAGVIVIGSLVIIVNV 300


>gnl|CDD|31425 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
          Length = 444

 Score = 31.0 bits (70), Expect = 0.49
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 7  KILIIGSGPAGYTAAIYAARA--MLKPVII-AGSDLGGQLMITESIENYP 53
          KI IIG G AG +AA    +A   ++  +  A   +GG L+ T  I+ + 
Sbjct: 2  KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG-LLRTVKIDGFL 50


>gnl|CDD|114453 pfam05728, UPF0227, Uncharacterized protein family (UPF0227).
          Despite being classed as uncharacterized proteins, the
          members of this family are almost certainly enzymes
          that are distantly related to the pfam00561.
          Length = 187

 Score = 30.8 bits (70), Expect = 0.53
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 5  DSKILIIGSGPAGYTAAIYAARAMLKPVIIA 35
          D   L++GS   GY A     R  L+ V+  
Sbjct: 58 DDNPLLVGSSLGGYYATWLGFRCGLRQVLFN 88


>gnl|CDD|37966 KOG2755, KOG2755, KOG2755, Oxidoreductase [General function
           prediction only].
          Length = 334

 Score = 30.7 bits (69), Expect = 0.57
 Identities = 17/60 (28%), Positives = 31/60 (51%)

Query: 228 NKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV 287
           +K++    +   D I  A G  PN++   +++     +    + D+  TS+P +FAAGDV
Sbjct: 260 DKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDV 319


>gnl|CDD|109456 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase. 
          Length = 258

 Score = 30.3 bits (69), Expect = 0.68
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 11/59 (18%)

Query: 164 HLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNI-----DFL-FDTEVVD---VIGSIP 213
            LAK A++V  +     L   K LQ+KL L  N+     DFL F     +   V+G+IP
Sbjct: 47  ELAKRAKQVVAIEIDPRL--AKRLQKKLALHPNVEVVHQDFLKFSFPKHEPFLVVGNIP 103


>gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites
          biosynthesis, transport and catabolism].
          Length = 501

 Score = 30.3 bits (68), Expect = 0.68
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 1  MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLM 44
           A    K+++IG+G AG +AA          +++   D +GG++ 
Sbjct: 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55


>gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
           production and conversion].
          Length = 532

 Score = 30.3 bits (68), Expect = 0.78
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)

Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRS-----SLRSEKIL 187
           DVIV+GGG T A  A   A    +V +V +       S RS K++
Sbjct: 14  DVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLI 58



 Score = 27.6 bits (61), Expect = 5.2
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 1  MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
          +   +  +++IG G  G   A  AA   LK  ++   DL  
Sbjct: 8  LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLAS 48


>gnl|CDD|38323 KOG3113, KOG3113, KOG3113, Uncharacterized conserved protein
           [Function unknown].
          Length = 293

 Score = 30.0 bits (67), Expect = 0.84
 Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 124 SEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS 183
           SE+  +    S C  C    Y+  DVIV+ G     EE + L     +  +  R++  + 
Sbjct: 138 SERALKEIKASVCHVCGA-AYQEDDVIVLNG----TEEDVDLL----KTRMEERKAKAKL 188

Query: 184 EK 185
           EK
Sbjct: 189 EK 190


>gnl|CDD|107362 cd06367, PBP1_iGluR_NMDA, N-terminal
           leucine/isoleucine/valine-binding protein (LIVBP)-like
           domain of the ionotropic N-methyl-d-asparate (NMDA)
           subtype of glutamate receptors.  N-terminal
           leucine/isoleucine/valine-binding protein (LIVBP)-like
           domain of the ionotropic N-methyl-d-asparate (NMDA)
           subtype of glutamate receptors.  While this N-terminal
           domain belongs to the periplasmic-binding fold type I
           superfamily, the glutamate-binding domain of the iGluR
           is structurally homologous to the periplasmic-binding
           fold type II. The LIVBP-like domain of iGluRs is thought
           to play a role in the initial assembly of iGluR
           subunits, but it is not well understood how this domain
           is arranged and functions in intact iGluR. The function
           of the NMDA subtype receptor serves critical functions
           in neuronal development, functioning, and degeneration
           in the mammalian central nervous system. The functional
           NMDA receptor is a heterotetramer comprising two NR1 and
           two NR2 (A, B, C, and D) or NR3 (A and B) subunits. The
           receptor controls a cation channel that is highly
           permeable to monovalent ions and calcium and exhibits
           voltage-dependent inhibition by magnesium. Dual
           agonists, glutamate and glycine, are required for
           efficient activation of the NMDA receptor. Among NMDA
           receptor subtypes, the NR2B subunit containing receptors
           appear particularly important for pain perception; thus
           NR2B-selective antagonists may be useful in the
           treatment of chronic pain.
          Length = 362

 Score = 30.0 bits (68), Expect = 0.87
 Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 13/74 (17%)

Query: 254 IFR--HQLKMTNTNYIWTMPDSTATSI-------PGIFA----AGDVADERYRQAITAAA 300
           IF     L +T   Y+W + +    S         G+           + R R A+   A
Sbjct: 210 IFEAAASLGLTGPGYVWIVGELALGSGLAPEGLPVGLLGVGLDTWYSLEARVRDAVAIVA 269

Query: 301 MGCMAALEVEHYLS 314
               + L  +  L 
Sbjct: 270 RAAESLLRDKGALP 283


>gnl|CDD|38171 KOG2960, KOG2960, KOG2960, Protein involved in thiamine
           biosynthesis and DNA damage tolerance [General function
           prediction only].
          Length = 328

 Score = 30.0 bits (67), Expect = 0.89
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 9/48 (18%)

Query: 5   DSKILIIGSGPAGYTAAIYAA--RAMLKPVII-------AGSDLGGQL 43
           +S ++I+G+G AG +AA   A  R  LK  II        G+ LGGQL
Sbjct: 76  ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQL 123


>gnl|CDD|48037 cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT).  Brain
           acyl-CoA hydrolase (BACH).  These enzymes deacylate
           long-chain fatty acids by hydrolyzing acyl-CoA
           thioesters to free fatty acids and CoA-SH. Eukaryotic
           members of this family are expressed in brain, testis,
           and brown adipose tissues. The archeal and eukaryotic
           members of this family have two tandem copies of the
           conserved hot dog fold, while most bacterial members
           have only one copy..
          Length = 123

 Score = 29.8 bits (67), Expect = 1.1
 Identities = 19/56 (33%), Positives = 27/56 (48%)

Query: 59  IRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATG 114
           I G WL+E M + A     +     VV+  +DR  FL   + GD+    A V+ TG
Sbjct: 25  IFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTG 80


>gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related
           flavoprotein monooxygenases [Energy production and
           conversion, General function prediction only].
          Length = 420

 Score = 29.5 bits (66), Expect = 1.1
 Identities = 13/40 (32%), Positives = 18/40 (45%)

Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSE 184
           K   V++VGGG      AL L +    V ++  R   R E
Sbjct: 1   KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40


>gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain.  This domain is
          involved in FAD binding in a number of enzymes.
          Length = 349

 Score = 29.6 bits (67), Expect = 1.1
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 5  DSKILIIGSGPAGYTAAIYAARAMLKPVII 34
          ++ +LI+G GPAG   A+  ARA ++ V++
Sbjct: 1  ETDVLIVGGGPAGLMLALLLARAGVRVVLV 30



 Score = 27.7 bits (62), Expect = 4.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180
           DV++VGGG      AL LA+   RV +V R ++
Sbjct: 3   DVLIVGGGPAGLMLALLLARAGVRVVLVERHAT 35


>gnl|CDD|34178 COG4529, COG4529, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 474

 Score = 29.5 bits (66), Expect = 1.2
 Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 147 KDVIVVGGGNTAAEEALHLAKIAR---RVTIVHRRSSL 181
             V ++GGG +    A HL K  R    ++I   R + 
Sbjct: 2   FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39


>gnl|CDD|36277 KOG1059, KOG1059, KOG1059, Vesicle coat complex AP-3, delta subunit
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 877

 Score = 29.5 bits (66), Expect = 1.2
 Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 12/48 (25%)

Query: 195 SNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGI 242
           + ID  F+  + D+I             G+R H + E  F  + ++ I
Sbjct: 6   APIDRFFEKSLKDLI------------KGIRSHKEDEEKFISQCLEEI 41


>gnl|CDD|30379 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
          Length = 518

 Score = 29.5 bits (66), Expect = 1.2
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 5  DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG 40
             +LIIGSG AG TAA+  A +  +  ++    LG
Sbjct: 7  HPDVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41



 Score = 28.7 bits (64), Expect = 2.0
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 142 FFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRS 179
             +++ DV+++G G      AL LA  + RVT++ +  
Sbjct: 3   TDFEHPDVLIIGSGLAGLTAALSLAP-SFRVTVLTKGP 39


>gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
          [Amino acid transport and metabolism].
          Length = 421

 Score = 29.1 bits (65), Expect = 1.6
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 6  SKILIIGSGPAGYTAAIYAARAMLKPVII 34
            + IIG G AG T  +   +A  +  I+
Sbjct: 3  FDVAIIGGGLAGLTCGLALQQAGKRCAIV 31



 Score = 26.4 bits (58), Expect = 10.0
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 17/69 (24%)

Query: 146 NKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEV 205
           N DV ++GGG       L L +  +R  IV+R                QS +   F +  
Sbjct: 2   NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG---------------QSALH--FSSGS 44

Query: 206 VDVIGSIPE 214
           +D++G +P+
Sbjct: 45  LDLLGRLPD 53


>gnl|CDD|144908 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase.  This
           family contains both shikimate and quinate
           dehydrogenases. Shikimate 5-dehydrogenase catalyses the
           conversion of shikimate to 5-dehydroshikimate. This
           reaction is part of the shikimate pathway which is
           involved in the biosynthesis of aromatic amino acids.
           Quinate 5-dehydrogenase catalyses the conversion of
           quinate to 5-dehydroquinate. This reaction is part of
           the quinate pathway where quinic acid is exploited as a
           source of carbon in prokaryotes and microbial
           eukaryotes. Both the shikimate and quinate pathways
           share two common pathway metabolites 3-dehydroquinate
           and dehydroshikimate.
          Length = 134

 Score = 29.2 bits (66), Expect = 1.7
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 144 YKNKDVIVVGGGNTAAEEALHL-AKIARRVTIVHR 177
            K K V+++G G  A   A HL +K A+++TI +R
Sbjct: 10  LKGKKVLLIGAGEMARLAAKHLLSKGAKKITIANR 44


>gnl|CDD|30111 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like
          enzymes involved in molybdopterin and thiamine
          biosynthesis family. The common reaction mechanism
          catalyzed by MoeB and ThiF, like other E1 enzymes,
          begins with a nucleophilic attack of the C-terminal
          carboxylate of MoaD and ThiS, respectively, on the
          alpha-phosphate of an ATP molecule bound at the active
          site of the activating enzymes, leading to the
          formation of a high-energy acyladenylate intermediate
          and subsequently to the formation of  a thiocarboxylate
          at the C termini of MoaD and ThiS. MoeB, as the MPT
          synthase (MoaE/MoaD complex) sulfurase, is involved in
          the biosynthesis of the molybdenum cofactor, a
          derivative of the tricyclic pterin, molybdopterin
          (MPT). ThiF catalyzes the adenylation of ThiS, as part
          of the biosynthesis pathway of thiamin pyrophosphate
          (vitamin B1). .
          Length = 228

 Score = 28.5 bits (64), Expect = 2.3
 Identities = 10/34 (29%), Positives = 20/34 (58%)

Query: 5  DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38
          ++++L++G+G  G  AA Y A A +  + +   D
Sbjct: 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54


>gnl|CDD|32579 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
           [General function prediction only].
          Length = 486

 Score = 28.7 bits (64), Expect = 2.3
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 64  LMEQMRQQAENFGTKII-QDLVVSVDL-DRHPFLVETQSGDLWHADAVVIATG-SEVKWL 120
           +++ +R+  E+ G +I     V  +++ D     V+   G+   AD VV+A G S   W 
Sbjct: 175 VVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWF 234

Query: 121 RLESEK 126
            +  +K
Sbjct: 235 EMLHKK 240



 Score = 28.3 bits (63), Expect = 3.1
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 272 DSTATSIPGIFAAGDVADERYRQAITAAAMGCMAA 306
           +  +TSI G++ AGD A    R  ++AAA G  AA
Sbjct: 443 EDLSTSIKGLYPAGDGAGLA-RGIVSAAADGIKAA 476


>gnl|CDD|32731 COG2907, COG2907, Predicted NAD/FAD-binding protein [General
          function prediction only].
          Length = 447

 Score = 28.4 bits (63), Expect = 3.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)

Query: 7  KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQ 42
          KI +IGSG +G +AA   +R     +  A   LGG 
Sbjct: 10 KIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGH 45


>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
          [Amino acid transport and metabolism].
          Length = 542

 Score = 28.1 bits (62), Expect = 3.1
 Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 1  MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIR 60
              +   +I+GSG AG   A   + A L  +++      G       I+    +A  + 
Sbjct: 3  EMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLE----AGGPDRRPLIQMPAAYAFLMN 58

Query: 61 GDWLMEQMRQQAE 73
          G       R + E
Sbjct: 59 GPRYDWGFRTEPE 71


>gnl|CDD|30722 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
          Length = 414

 Score = 28.3 bits (63), Expect = 3.1
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 145 KNKDVIVVGGGNTAAEEALHLA-KIARRVTIVHR---RSSLRSEKILQEKLFLQSNIDFL 200
           K+K V+V+G G      A HLA K  +++TI +R   R+   ++K+  E + L+  ++ L
Sbjct: 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEAL 236

Query: 201 FDTEVVDVIGSIPEP 215
            + +VV    S P P
Sbjct: 237 AEADVVISSTSAPHP 251


>gnl|CDD|30371 COG0021, TktA, Transketolase [Carbohydrate transport and
           metabolism].
          Length = 663

 Score = 28.2 bits (63), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 106 ADAVVIATGSEVKWLRLESEKKFQGFGVSA 135
            D ++IATGSEV  L +E+ K+ +  G+  
Sbjct: 549 PDVILIATGSEV-ELAVEAAKELEAEGIKV 577


>gnl|CDD|38064 KOG2853, KOG2853, KOG2853, Possible oxidoreductase [General
           function prediction only].
          Length = 509

 Score = 28.0 bits (62), Expect = 3.2
 Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 18/115 (15%)

Query: 143 FYKNKDVIVVGGGNTAAEEALHLAKIAR----RVTIVHR------RSSLRSEKILQEKLF 192
           F  + DV+++GGG + +  A  L + AR     V +V R       S++ S   + ++  
Sbjct: 83  FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS 142

Query: 193 LQSNIDF-LFDTEVVDVIG------SIPEPPLFPSVSG-VRLHNKKEGNFFERNV 239
           L  NI   LF  E +             +  L    +G +RL +++E      N 
Sbjct: 143 LPENIQMSLFTAEFLRNAREHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNS 197


>gnl|CDD|143522 cd06964, NR_DBD_RAR, DNA-binding domain of retinoic acid receptor
           (RAR) is composed of two C4-type zinc fingers.
           DNA-binding domain of retinoic acid receptor (RAR) is
           composed of two C4-type zinc fingers. Each zinc finger
           contains a group of four Cys residues which co-ordinates
           a single zinc atom. RAR interacts with specific DNA
           sites upstream of the target gene and modulates the rate
           of transcriptional initiation. RARs mediate the
           biological effect of retinoids, including both natural
           dietary vitamin A (retinol) metabolites and active
           synthetic analogs. Retinoids play key roles in a wide
           variety of essential biological processes, such as
           vertebrate embryonic morphogenesis and organogenesis,
           differentiation and apoptosis, and homeostasis. RAR
           function as a heterodimer with retinoic X receptor by
           binding to specific RAR response elements (RAREs), which
           are composed of two direct repeats of the consensus
           sequence 5'-AGGTCA-3' separated by one to five base pair
           and found in the promoter regions of retinoid target
           genes. Like other members of the nuclear receptor (NR)
           superfamily of ligand-activated transcription factors,
           retinoic acid receptors have a central well conserved
           DNA binding domain (DBD), a variable N-terminal domain,
           a non-conserved hinge and a C-terminal ligand binding
           domain (LBD).
          Length = 85

 Score = 28.0 bits (62), Expect = 3.8
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 131 FGVSACATCDGFF 143
           +GVSAC  C GFF
Sbjct: 19  YGVSACEGCKGFF 31


>gnl|CDD|80317 cd04371, DEP, DEP domain, named after Dishevelled, Egl-10, and
          Pleckstrin, where this domain was first discovered. The
          function of this domain is still not clear, but it is
          believed to be important for the membrane association
          of the signaling proteins in which it is present. New
          studies show that the DEP domain of Sst2, a yeast RGS
          protein is necessary and sufficient for receptor
          interaction..
          Length = 81

 Score = 28.0 bits (62), Expect = 3.9
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 62 DWLMEQM----RQQAENFGTKII-QDLVVSVDLDRHPFL 95
          DWL++ +    R++A   G  ++   L+  V  D+H F 
Sbjct: 36 DWLLDNLEAITREEAVELGQALLKHGLIHHVSDDKHTFR 74


>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the
           zinc-dependent alcohol dehydrogenases (ADH).  This group
           contains the hypothetical TM0436 alcohol dehydrogenase
           from Thermotoga maritima,  proteins annotated as
           5-exo-alcohol dehydrogenase, and other members of the
           medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           MDR, which contains the zinc-dependent alcohol
           dehydrogenase (ADH-Zn) and related proteins, is a
           diverse group of proteins related to the first
           identified member, class I mammalian ADH.  MDRs display
           a broad range of activities and are distinguished from
           the smaller short chain dehydrogenases (~ 250 amino
           acids vs. the ~ 350 amino acids of the MDR).  The MDR
           proteins have 2 domains: a C-terminal NAD(P)
           binding-Rossmann fold domain of a beta-alpha form and an
           N-terminal catalytic domain with distant homology to
           GroES.  The MDR group contains a host of activities,
           including the founding alcohol dehydrogenase (ADH),
           quinone reductase, sorbitol dehydrogenase, formaldehyde
           dehydrogenase, butanediol DH, ketose reductase, cinnamyl
           reductase, and numerous others. The zinc-dependent
           alcohol dehydrogenases (ADHs) catalyze the
           NAD(P)(H)-dependent interconversion of alcohols to
           aldehydes or ketones. Active site zinc has a catalytic
           role, while structural zinc aids in stability.
          Length = 361

 Score = 28.0 bits (63), Expect = 3.9
 Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 29/107 (27%)

Query: 9   LIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQM 68
           ++ G+GP G  A   A  A  + VI+                                + 
Sbjct: 182 VVQGAGPLGLYAVAAAKLAGARRVIVIDGS---------------------------PER 214

Query: 69  RQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGS 115
            + A  FG     D+    D  R   + +   G    AD V+ A+G 
Sbjct: 215 LELAREFGADATIDIDELPDPQRRAIVRDITGGRG--ADVVIEASGH 259


>gnl|CDD|37626 KOG2415, KOG2415, KOG2415, Electron transfer flavoprotein
           ubiquinone oxidoreductase [Energy production and
           conversion].
          Length = 621

 Score = 28.0 bits (62), Expect = 3.9
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 9/69 (13%)

Query: 2   ASHDSKILIIGSGPAGYTAAIYAARAMLKP-------VIIAGSDLGGQLMITESIENYPG 54
            S +  ++I+G+GPAG +AAI   +   K        V+   +++GG  +    IE  PG
Sbjct: 73  ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIE--PG 130

Query: 55  FATSIRGDW 63
               +  DW
Sbjct: 131 ALDELLPDW 139


>gnl|CDD|112521 pfam03711, OKR_DC_1_C, Orn/Lys/Arg decarboxylase, C-terminal
           domain. 
          Length = 137

 Score = 28.0 bits (63), Expect = 3.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 43  LMITESIENYPGFATSIRG 61
           L + E   ++PGF   I+G
Sbjct: 110 LALEEFGNHFPGFEPEIQG 128


>gnl|CDD|33316 COG3513, COG3513, Uncharacterized protein conserved in bacteria
           [Function unknown].
          Length = 1088

 Score = 27.7 bits (61), Expect = 4.1
 Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 24/106 (22%)

Query: 102 DLWHA-DAVVIATGSEVKWLRLESEKKFQGFGV-----------SACATCDGFFYKN--- 146
           +  HA DAVV+A      + +LE    +  +                A     FY N   
Sbjct: 733 NYHHAHDAVVVACALNSMYPKLERFFVYGEYNSYDLYKANSDQEIGKAISKKLFYPNIMK 792

Query: 147 ----KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQ 188
               +  I V  G              + +  V +  S R + +++
Sbjct: 793 FFAQEVRIRVFDGEPGEILW-----DKKYLDTVKKVLSGRQQNVVK 833


>gnl|CDD|38031 KOG2820, KOG2820, KOG2820, FAD-dependent oxidoreductase [General
           function prediction only].
          Length = 399

 Score = 27.6 bits (61), Expect = 4.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHR 177
           K++DVI+VG G      A  LAK   ++ ++ +
Sbjct: 6   KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQ 38


>gnl|CDD|146292 pfam03575, Peptidase_S51, Peptidase family S51. 
          Length = 154

 Score = 27.6 bits (62), Expect = 5.1
 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 5/27 (18%)

Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARR 171
              DVI VGGGNT      HL K+ R 
Sbjct: 34  LKADVIYVGGGNTF-----HLLKLLRE 55


>gnl|CDD|30824 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in
          molybdopterin and thiamine biosynthesis family 2
          [Coenzyme metabolism].
          Length = 254

 Score = 27.3 bits (60), Expect = 5.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 5  DSKILIIGSGPAGYTAAIYAARAMLKPVIIAG------SDLGGQLMITES 48
          DS++L++G+G  G  AA Y A A +  + I        S+L  Q + TE+
Sbjct: 30 DSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEA 79


>gnl|CDD|31238 COG1035, FrhB, Coenzyme F420-reducing hydrogenase, beta subunit
           [Energy production and conversion].
          Length = 332

 Score = 27.2 bits (60), Expect = 5.5
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 17/68 (25%)

Query: 84  VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFF 143
           V  +D+ +  F+VE + G              EVK + L   K+ + +G   C  C  F 
Sbjct: 206 VEKMDIRKGKFVVELKDG--------------EVKEIPL---KETEEYGPEGCRVCTDFV 248

Query: 144 YKNKDVIV 151
            +  D+ V
Sbjct: 249 AELADISV 256


>gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly
           involved in translation [Translation, ribosomal
           structure and biogenesis].
          Length = 679

 Score = 27.2 bits (60), Expect = 5.9
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIV 175
           DV+V+GGG+   E A   A++  R  ++
Sbjct: 30  DVVVIGGGHAGCEAAAAAARLGARTLLL 57


>gnl|CDD|173942 cd08183, Fe-ADH2, Iron-containing alcohol dehydrogenases-like.
           Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol
           dehydrogenase catalyzes the reduction of acetaldehyde to
           alcohol with NADP as cofactor. Its activity requires
           iron ions. The protein structure represents a
           dehydroquinate synthase-like fold and is a member of the
           iron-activated alcohol dehydrogenase-like family. They
           are distinct from other alcohol dehydrogenases which
           contains different protein domain. Proteins of this
           family have not been characterized. Their specific
           function is unknown. They are mainly found in bacteria.
          Length = 374

 Score = 27.1 bits (61), Expect = 6.1
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 150 IVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVI 209
           I  G G  A E     A++ RRV +V   SSLR+  +++      + I+       V  +
Sbjct: 4   IHFGRG-VAKELPALAAELGRRVLLVTGASSLRAAWLIEA--LRAAGIE-------VTHV 53

Query: 210 GSIPEP 215
               EP
Sbjct: 54  VVAGEP 59


>gnl|CDD|153240 cd03146, GAT1_Peptidase_E, Type 1 glutamine amidotransferase
           (GATase1)-like domain found in peptidase E.  Type 1
           glutamine amidotransferase (GATase1)-like domain found
           in peptidase E. This group contains proteins similar to
           the aspartyl dipeptidases Salmonella typhimurium
           peptidase E and Xenopus laevis peptidase E. In bacteria
           peptidase E is believed to play a role in degrading
           peptides generated by intracellular protein breakdown or
           imported into the cell as nutrient sources. Peptidase E
           uniquely hydrolyses only Asp-X dipeptides (where X is
           any amino acid), and one tripeptide Asp-Gly-Gly.
           Peptidase E is believed to be a serine peptidase having
           a Ser-His-Glu catalytic triad which differs from the
           Cys-His-Glu catalytic triad typical of GATase1 domains
           by having a Ser in place of the reactive Cys at the
           nucleophile elbow. Xenopus PepE  is developmentally
           regulated in response to thyroid hormone and, it is
           thought to play a role in apoptosis during tail
           reabsorption.
          Length = 212

 Score = 27.2 bits (61), Expect = 6.6
 Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 4/29 (13%)

Query: 148 DVIVVGGGNT----AAEEALHLAKIARRV 172
           DVI VGGGNT    A      L  I +  
Sbjct: 82  DVIYVGGGNTFNLLAQWREHGLDAILKAA 110


>gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
           outer membrane].
          Length = 374

 Score = 27.1 bits (60), Expect = 6.7
 Identities = 12/36 (33%), Positives = 21/36 (58%)

Query: 146 NKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL 181
             D ++VG G + A  A   A++ +RV IV +R+ +
Sbjct: 1   MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36


>gnl|CDD|107373 cd06378, PBP1_iGluR_NMDA_NR2, N-terminal
           leucine/isoleucine/valine-binding protein (LIVBP)-like
           domain of the NR2 subunit of NMDA receptor family.
           N-terminal leucine/isoleucine/valine-binding protein
           (LIVBP)-like domain of the NR2 subunit of NMDA receptor
           family. The ionotropic N-methyl-d-asparate (NMDA)
           subtype of glutamate receptor serves critical functions
           in neuronal development, functioning, and degeneration
           in the mammalian central nervous system. The functional
           NMDA receptor is a heterotetramer composed of two NR1
           and two NR2 (A, B, C, and D) or of NR3 (A and B)
           subunits. The receptor controls a cation channel that is
           highly permeable to monovalent ions and calcium and
           exhibits voltage-dependent inhibition by magnesium. Dual
           agonists, glutamate and glycine, are required for
           efficient activation of the NMDA receptor. Among NMDA
           receptor subtypes, the NR2B subunit containing receptors
           appear particularly important for pain perception; thus
           NR2B-selective antagonists may be useful in the
           treatment of chronic pain.
          Length = 362

 Score = 26.9 bits (60), Expect = 6.8
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 15/70 (21%)

Query: 254 IFR--HQLKMTNTNYIWTMPDSTATS---IPGIFAAGDVA----------DERYRQAITA 298
           IFR      +T   Y+W +P     +    P  F  G ++            R R  +  
Sbjct: 209 IFRAARSAGLTGPGYVWIVPSLVLGNTDLGPSEFPVGLISVSYDGWRYSLRARVRDGVAI 268

Query: 299 AAMGCMAALE 308
            A G  A L 
Sbjct: 269 IATGASAMLR 278


>gnl|CDD|37321 KOG2110, KOG2110, KOG2110, Uncharacterized conserved protein,
           contains WD40 repeats [Function unknown].
          Length = 391

 Score = 26.8 bits (59), Expect = 7.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 228 NKKEGNFFERNVDGIFIAIGYKPNTKIFR 256
            K   NF   N D   +++G K   KIF 
Sbjct: 4   KKPTINFIGFNQDSTLLSVGSKDGYKIFS 32


>gnl|CDD|107290 cd06295, PBP1_CelR, Ligand binding domain of a transcription
           regulator of cellulose genes, CelR, which is highly
           homologous to the LacI-GalR family of bacterial
           transcription regulators.  This group includes the
           ligand binding domain of a transcription regulator of
           cellulose genes, CelR, which is highly homologous to the
           LacI-GalR family of bacterial transcription regulators.
           The binding of CelR to the celE promoter is inhibited
           specifically by cellobiose. The LacI-GalR family
           repressors are composed of two functional domains: an
           N-terminal HTH (helix-turn-helix) domain, which is
           responsible for the DNA-binding specificity, and a
           C-terminal ligand-binding domain, which is homologous to
           the sugar-binding domain of ABC-type transport systems
           that contain the type I periplasmic binding protein-like
           fold. As also observed in the periplasmic binding
           proteins, the C-terminal domain of the bacterial
           transcription repressor undergoes a conformational
           change upon ligand binding which in turn changes the DNA
           binding affinity of the repressor.
          Length = 275

 Score = 26.8 bits (60), Expect = 8.0
 Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 2/47 (4%)

Query: 8   ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPG 54
           +++IG                  P ++ G  L GQ       +N  G
Sbjct: 68  VILIGQH--DQDPLPERLAETGLPFVVWGRPLPGQPYCYVGSDNVGG 112


>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
           glutamyl-tRNA reductase.  Glutamyl-tRNA reductase
           catalyzes the conversion of glutamyl-tRNA to
           glutamate-1-semialdehyde, initiating the synthesis of
           tetrapyrrole. Whereas tRNAs are generally associated
           with peptide bond formation in protein translation, here
           the tRNA activates glutamate in the initiation of
           tetrapyrrole biosynthesis in archaea, plants and many
           bacteria. In the first step, activated glutamate is
           reduced to glutamate-1-semi-aldehyde via the NADPH
           dependent glutamyl-tRNA reductase. Glutamyl-tRNA
           reductase forms a V-shaped dimer. Each monomer has 3
           domains: an N-terminal catalytic domain, a classic
           nucleotide binding domain, and a C-terminal dimerization
           domain. Although the representative structure 1GPJ lacks
           a bound NADPH, a theoretical binding pocket has been
           described. (PMID 11172694). Amino acid dehydrogenase
           (DH)-like NAD(P)-binding domains are members of the
           Rossmann fold superfamily and include glutamate,
           leucine, and phenylalanine DHs, methylene
           tetrahydrofolate DH, methylene-tetrahydromethanopterin
           DH, methylene-tetrahydropholate DH/cyclohydrolase,
           Shikimate DH-like proteins, malate oxidoreductases, and
           glutamyl tRNA reductase. Amino acid DHs catalyze the
           deamination of amino acids to keto acids with NAD(P)+ as
           a cofactor. The NAD(P)-binding Rossmann fold superfamily
           includes a wide variety of protein families including
           NAD(P)- binding domains of alcohol DHs,
           tyrosine-dependent oxidoreductases,
           glyceraldehyde-3-phosphate DH, lactate/malate DHs,
           formate/glycerate DHs, siroheme synthases,
           6-phosphogluconate DH, amino acid DHs, repressor rex,
           NAD-binding potassium channel  domain, CoA-binding, and
           ornithine cyclodeaminase-like domains. These domains
           have an alpha-beta-alpha configuration. NAD binding
           involves numerous hydrogen and van der Waals contacts.
          Length = 311

 Score = 26.8 bits (60), Expect = 8.4
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 145 KNKDVIVVGGGNTAAEEALHLA-KIARRVTIVHR 177
           K K V+V+G G      A HLA K    +TI +R
Sbjct: 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR 210


>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase
           (beta-AS) and similar proteins (class 5 nitrilases).
           This family includes mammalian-like beta-AS (EC 3.5.1.6,
           also known as beta-ureidopropionase or
           N-carbamoyl-beta-alanine amidohydrolase). This enzyme
           catalyzes the third and final step in the catabolic
           pyrimidine catabolic pathway responsible for the
           degradation of uracil and thymine, the hydrolysis of
           N-carbamyl-beta-alanine and
           N-carbamyl-beta-aminoisobutyrate to the beta-amino
           acids, beta-alanine and beta-aminoisobutyrate
           respectively. This family belongs to a larger nitrilase
           superfamily comprised of nitrile- or amide-hydrolyzing
           enzymes and amide-condensing enzymes, which depend on a
           Glu-Lys-Cys catalytic triad. This superfamily has been
           classified in the literature based on global and
           structure based sequence analysis into thirteen
           different enzyme classes (referred to as 1-13), this
           subgroup corresponds to class 5. Members of this
           superfamily generally form homomeric complexes, the
           basic building block of which is a homodimer. Beta-ASs
           from this subgroup are found in various oligomeric
           states, dimer (human), hexamer (calf liver), decamer
           (Arabidopsis and Zea mays), and in the case of
           Drosophila melanogaster beta-AS, as a homooctamer
           assembled as a left-handed helical turn, with the
           possibility of higher order oligomers formed by adding
           dimers at either end. Rat beta-AS changes its oligomeric
           state (hexamer, trimer, dodecamer) in response to
           allosteric effectors. Eukaryotic Saccharomyces kluyveri
           beta-AS belongs to a different superfamily.
          Length = 287

 Score = 26.7 bits (59), Expect = 8.9
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 26/122 (21%)

Query: 9   LIIGSGPAGYTAAIYAAR-AML---KPVIIAGSDLGGQLMITESIENYPGFATSIRGDW- 63
           LI  S      A I   + AM+     +I   ++ G Q++  + I   P F       W 
Sbjct: 8   LIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWY 67

Query: 64  ----------LMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIAT 113
                       ++    A+ +   +I            P   + Q G L++  AV+ A 
Sbjct: 68  EFAEEIPNGPTTKRFAALAKEYNMVLI-----------LPIYEKEQGGTLYNTAAVIDAD 116

Query: 114 GS 115
           G+
Sbjct: 117 GT 118


>gnl|CDD|35408 KOG0187, KOG0187, KOG0187, 40S ribosomal protein S17 [Translation,
           ribosomal structure and biogenesis].
          Length = 134

 Score = 26.4 bits (58), Expect = 9.6
 Identities = 11/53 (20%), Positives = 26/53 (49%)

Query: 175 VHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLH 227
           V  ++  ++ +++ EK + +  +DF  +  V + +  IP   L   ++G   H
Sbjct: 4   VRTKTVKKAARVIIEKYYTRLTLDFHTNKRVCEEVAIIPSKKLRNKIAGYVTH 56


>gnl|CDD|107302 cd06307, PBP1_uncharacterized_sugar_binding, Periplasmic
           sugar-binding domain of uncharacterized transport
           systems.  Periplasmic sugar-binding domain of
           uncharacterized transport systems that share homology
           with a family of pentose/hexose sugar-binding proteins
           of the type I periplasmic binding protein (PBP1)
           superfamily. The members of this group are predicted to
           be involved in the transport of sugar-containing
           molecules across cellular and organellar membranes.
          Length = 275

 Score = 26.7 bits (60), Expect = 9.7
 Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)

Query: 151 VVGGGNTAAEEAL-HLAKIARRVTIVH 176
             GGGN     AL    +  + V + H
Sbjct: 192 NAGGGNRGVIRALREAGRAGKVVFVGH 218


>gnl|CDD|146932 pfam04536, DUF477, Domain of unknown function (DUF477).  The
           function of this presumed domain is unknown. It is found
           in both eukarya and eubacteria.
          Length = 124

 Score = 26.4 bits (59), Expect = 9.8
 Identities = 8/41 (19%), Positives = 12/41 (29%)

Query: 270 MPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVE 310
           +PD+    I             Y + + AA     A L   
Sbjct: 84  LPDARWDRIIDDTIVPAFRQGDYAEGLVAAIDAIGAVLAGH 124


>gnl|CDD|32964 COG3150, COG3150, Predicted esterase [General function prediction
          only].
          Length = 191

 Score = 26.4 bits (58), Expect = 9.9
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 5  DSKILIIGSGPAGYTAAIYAARAMLKPVII 34
          D   LI+GS   GY A        ++ V+ 
Sbjct: 58 DESPLIVGSSLGGYYATWLGFLCGIRAVVF 87


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0684    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,904,650
Number of extensions: 207843
Number of successful extensions: 907
Number of sequences better than 10.0: 1
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 148
Length of query: 321
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 227
Effective length of database: 4,232,491
Effective search space: 960775457
Effective search space used: 960775457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)