BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH)
protein [Candidatus Liberibacter asiaticus str. psy62]
(321 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH) protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 321
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIR 60
MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIR
Sbjct: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIR 60
Query: 61 GDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWL 120
GDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWL
Sbjct: 61 GDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWL 120
Query: 121 RLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180
RLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS
Sbjct: 121 RLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180
Query: 181 LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVD 240
LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVD
Sbjct: 181 LRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVD 240
Query: 241 GIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAA 300
GIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAA
Sbjct: 241 GIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAA 300
Query: 301 MGCMAALEVEHYLSIHQSSIT 321
MGCMAALEVEHYLSIHQSSIT
Sbjct: 301 MGCMAALEVEHYLSIHQSSIT 321
>gi|254780675|ref|YP_003065088.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 481
Score = 38.1 bits (87), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 24/34 (70%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
I++IGSGPAGY AAI AA+ K I+ + LGG
Sbjct: 7 IILIGSGPAGYVAAIRAAQLGFKVAIVEYAGLGG 40
Score = 27.3 bits (59), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 229 KKEGNFFERNVDGIFIAIGYKPNTK-IFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV 287
+K+G+ + + ++ G + N + I ++ + +N + T++PGI+A GDV
Sbjct: 268 RKDGSVSSMQAEKLLLSAGVQGNIENIGLEKIGVKTSNGCIIVDGYGRTNVPGIYAIGDV 327
Query: 288 A 288
A
Sbjct: 328 A 328
>gi|254780842|ref|YP_003065255.1| 2-octaprenyl-6-methoxyphenyl hydroxylase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 384
Score = 32.7 bits (73), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVD 207
DVI++G G + A+ AK +V RS L+ L+ + + IDFL + V D
Sbjct: 5 DVIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQD---LRTTMLMGEGIDFLKEINVWD 61
Query: 208 VIGSIPEPPLFPSVSGVRL 226
+ I EP VS RL
Sbjct: 62 FLQDIAEP-----VSSFRL 75
Score = 25.0 bits (53), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAG----SDLGGQLMITESIE 50
++IIGSG AG AAI AA+ +++ DL +++ E I+
Sbjct: 6 VIIIGSGLAGSVAAIGAAKKGFLTALVSPRSFLQDLRTTMLMGEGID 52
>gi|254781053|ref|YP_003065466.1| dihydrolipoamide dehydrogenase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 466
Score = 28.5 bits (62), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVII 34
+ ++G GPAGY AI AA+ K II
Sbjct: 5 VAVVGGGPAGYACAIKAAQLKNKVAII 31
>gi|254781055|ref|YP_003065468.1| glutathione reductase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 461
Score = 28.1 bits (61), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 72/184 (39%), Gaps = 24/184 (13%)
Query: 132 GVSACATCDGFFYKN---KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSE---K 185
G C T D F + +++GGG A E A L + + T+V R +S+ S+
Sbjct: 151 GSDLCITSDEIFSLKSLPQSTLIIGGGYIAVEFAGILNSLGSKTTLVTRGNSILSKFDSD 210
Query: 186 ILQ--EKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIF 243
I Q + + + + + V+ S SG K G + D +
Sbjct: 211 IRQGLTDVMISRGMQVFHNDTIESVV----------SESGQLKSILKSGKIVK--TDQVI 258
Query: 244 IAIGYKPNTK---IFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAA 300
+A+G P T + + +KM +I T S T++ IF+ GD++ + A
Sbjct: 259 LAVGRTPRTTGIGLEKVGVKMDENGFIITDCYS-RTNVQSIFSLGDISGHIQLTPVAIHA 317
Query: 301 MGCM 304
C
Sbjct: 318 AACF 321
>gi|254780808|ref|YP_003065221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
[Candidatus Liberibacter asiaticus str. psy62]
Length = 626
Score = 25.8 bits (55), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKI-ARRVTIVHRRSSLRS 183
++ DVIV+GGG+ E A AK+ A I H+ S++ S
Sbjct: 4 RSYDVIVIGGGHAGCEAAAVAAKLGASTALITHKTSTIGS 43
>gi|254780799|ref|YP_003065212.1| DNA translocase FtsK [Candidatus Liberibacter asiaticus str. psy62]
Length = 806
Score = 23.9 bits (50), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 117 VKWLRLESEKKFQGFGVSACATCDGFFYK 145
+KWL E E+++Q DGF K
Sbjct: 523 LKWLVCEMEERYQKMSKIGVRNIDGFNLK 551
>gi|254781048|ref|YP_003065461.1| malate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
Length = 320
Score = 23.1 bits (48), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 118 KWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGG 155
K L + +GFG C T D DV +V G
Sbjct: 43 KALDIAESSPVEGFGAQLCGTSDYSDIAEADVCIVTAG 80
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.320 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 200,463
Number of Sequences: 1233
Number of extensions: 8045
Number of successful extensions: 30
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 14
length of query: 321
length of database: 328,796
effective HSP length: 74
effective length of query: 247
effective length of database: 237,554
effective search space: 58675838
effective search space used: 58675838
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)