Query gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 623 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Tue May 24 13:22:12 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780284.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2qj6_A Toxin A; clostridial r 37.4 13 0.00039 16.6 1.1 20 371-390 6-25 (39) 2 >3fym_A Putative uncharacteriz 26.2 24 0.00072 15.0 0.9 111 345-461 12-128 (130) 3 >2qgs_A Protein Se1688; alpha- 20.0 44 0.0013 13.4 1.2 79 383-472 4-91 (97) 4 >1vyi_A RNA polymerase alpha s 14.2 70 0.0021 12.2 2.1 48 353-405 6-57 (112) 5 >2j6p_A SB(V)-AS(V) reductase; 13.8 66 0.002 12.3 0.9 41 7-47 27-71 (121) 6 >1x1i_A Xanthan lyase; alpha/a 13.7 72 0.0021 12.1 1.7 82 368-449 62-147 (155) 7 >2hjj_A Hypothetical protein Y 10.1 95 0.0028 11.4 1.3 19 215-233 20-38 (87) 8 >1pby_A Quinohemoprotein amine 9.6 60 0.0018 12.6 -0.5 10 14-23 18-27 (61) 9 >1tt5_A APPBP1, amyloid protei 9.3 1E+02 0.003 11.2 2.8 41 21-62 64-108 (140) 10 >1gpi_A Exoglucanase I; hydrol 9.1 99 0.0029 11.3 0.5 12 204-215 41-52 (80) No 1 >>2qj6_A Toxin A; clostridial repetitive oligo peptides; 2.50A {Clostridium difficile} (A:200-238) Probab=37.44 E-value=13 Score=16.59 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=15.9 Q ss_pred CCEEEEECCCCCHHHHCCCC Q ss_conf 66044411762100104311 Q gi|254780284|r 371 GGKKYLFNSNTEGIARGISI 390 (623) Q Consensus 371 ggkkylfnsntegiargisi 390 (623) .||||.||.||.--+.|..+ T Consensus 6 dgkkYYFn~Ntaia~tgy~~ 25 (39) T 2qj6_A 6 DGNRYYFEPNTAMGANGYKT 25 (39) T ss_dssp TTEEEEECTTTCCBCCEEEE T ss_pred EHHEEEECCCCCCCCCCEEE T ss_conf 12068722545321000378 No 2 >>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp} (A:) Probab=26.20 E-value=24 Score=14.97 Aligned_cols=111 Identities=10% Similarity=0.021 Sum_probs=56.8 Q ss_pred HCHHHCCHHHHHHHHHHHHHHCCHHHCCEEEEECC------CCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCC Q ss_conf 04334028984556753222201220660444117------621001043115666532101121033576200122225 Q gi|254780284|r 345 VDEEKLSLEKVNHSLEQDIATLSFEEGGKKYLFNS------NTEGIARGISINRDCSLGDDVHRENMFSAPEISVDGFHE 418 (623) Q Consensus 345 vdeeklslekvnhsleqdiatlsfeeggkkylfns------ntegiargisinrdcslgddvhrenmfsapeisvdgfhe 418 (623) -.+..+|++.+...+.-..++++--|-|+..-+.. ....||+...++-|--++.+.-+..-.....-.....+. T Consensus 12 R~~~glt~~elA~~~gis~~~is~~E~g~~~p~~~~~~~~~~l~~ia~~l~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 91 (130) T 3fym_A 12 RERLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQAHQDEIPSNQAEWDEVITVFN 91 (130) T ss_dssp HHHTTCCHHHHHHHHCCCHHHHHHHHTTCGGGSSSGGGHHHHHHHHHHHTTCCHHHHHHHTTTTSCCCCCCC-------- T ss_pred HHHCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC T ss_conf 99969999999988298999999998589654643169999999999995959999999998764654333110000012 Q ss_pred CCHHCCHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 5101013430342024530363035889999984478999887 Q gi|254780284|r 419 GSSLVSPALKSNSKRDVAQNRKFWLIGYILIVVGCGIYWFFQL 461 (623) Q Consensus 419 gsslvspalksnskrdvaqnrkfwligyilivvgcgiywffql 461 (623) .. . .............++++.-+++.++-|+||+.+. T Consensus 92 ~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (130) T 3fym_A 92 NN-----K-DLDYKSKSKEPIQLLVIMGITVLITLLLWIMLVL 128 (130) T ss_dssp ------------------------------------------- T ss_pred CC-----C-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 23-----4-4330001130699999999999999999999999 No 3 >>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Staphylococcus epidermidis atcc 12228} (A:129-225) Probab=20.02 E-value=44 Score=13.42 Aligned_cols=79 Identities=19% Similarity=0.297 Sum_probs=51.6 Q ss_pred HHHHCCC----CCCCCCCCCHHHHHHCCC-----CCCCCCCCCCCCCHHCCHHHHCCCHHHHHHCCCCHHHHHHHHHHHH Q ss_conf 0010431----156665321011210335-----7620012222551010134303420245303630358899999844 Q gi|254780284|r 383 GIARGIS----INRDCSLGDDVHRENMFS-----APEISVDGFHEGSSLVSPALKSNSKRDVAQNRKFWLIGYILIVVGC 453 (623) Q Consensus 383 giargis----inrdcslgddvhrenmfs-----apeisvdgfhegsslvspalksnskrdvaqnrkfwligyilivvgc 453 (623) ||||-+. .+|----.++..+++|-. ...-+++-|+|---....-++..+-|..|+.|.-++..|+ T Consensus 4 GIaR~F~y~G~~gr~lydp~~~~~~~~~~~~~~~~~~~~i~HF~eKLlkL~~~m~T~tgr~~A~~R~~~m~~Fl------ 77 (97) T 2qgs_A 4 GIARTFQFSGHFGEPXWTETKLSNEELHTSLVEELDNSAIKHFYEKLFKLKDLXHTPTAKKLAEERHQFXIQYL------ 77 (97) T ss_dssp HHHHHHHHHHHHTCCSCCCCCCCHHHHTSGGGGGSCCCHHHHHHHTGGGSGGGCCSHHHHHHHHHHHHHHHHHH------ T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------ T ss_conf 18999999866178667855567641127765025553899999999864876789999999999999999999------ Q ss_pred HHHHHHHHHHHHCCCCCCC Q ss_conf 7899988753200146784 Q gi|254780284|r 454 GIYWFFQLHREISFANEKP 472 (623) Q Consensus 454 giywffqlhreisfanekp 472 (623) =|+..|+.+..|.| T Consensus 78 -----~~~~~E~~~~~e~~ 91 (97) T 2qgs_A 78 -----KQFXSEWNFNKELE 91 (97) T ss_dssp -----HHHHHHHTTTC--- T ss_pred -----HHHHHHHCCCHHHH T ss_conf -----99999968455354 No 4 >>1vyi_A RNA polymerase alpha subunit; transferase, replication, transcription, RNA-directed RNA polymerase, phosphorylation; HET: GOL; 1.5A {Rabies virus} (A:) Probab=14.24 E-value=70 Score=12.18 Aligned_cols=48 Identities=38% Similarity=0.470 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHHHCCHHHCCEEEEECCCCCHHHH----CCCCCCCCCCCCHHHHHHC Q ss_conf 9845567532222012206604441176210010----4311566653210112103 Q gi|254780284|r 353 EKVNHSLEQDIATLSFEEGGKKYLFNSNTEGIAR----GISINRDCSLGDDVHRENM 405 (623) Q Consensus 353 ekvnhsleqdiatlsfeeggkkylfnsntegiar----gisinrdcslgddvhrenm 405 (623) |....|+|..||.---|--.|||-|.|..-||-- -.-+| | ||.-++.| T Consensus 6 eedd~svEaEiaHQiAESfSKkYkFPSrSSGIFL~NFEQLKmN----L-DdIVk~a~ 57 (112) T 1vyi_A 6 EEDDLSVEAEIAHQIAESFSKKYKFPSRSSGIFLYNFEQLKMN----L-DDIVKEAK 57 (112) T ss_dssp HHHHHHHHHHHHHHHHHTTTCCEEEEBTTSCEEEECGGGGCCC----H-HHHHHHHT T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECHHHHHCC----H-HHHHHHHC T ss_conf 1323017889999999986450468877774677618987456----8-99999862 No 5 >>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase, CDC25 phosphatase, rhodanese, C-MYC epitope, oxidoreductase; HET: EPE; 2.15A {Leishmania major} (A:1-121) Probab=13.82 E-value=66 Score=12.33 Aligned_cols=41 Identities=20% Similarity=0.037 Sum_probs=26.6 Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH----HHHHHHCCHH Q ss_conf 8641002311134643342123457888877----7656630014 Q gi|254780284|r 7 FLDKRDASFRIGQFPSSIPSLDSSIKDYSRQ----LTNIFLKDKV 47 (623) Q Consensus 7 fldkrdasfrigqfpssipsldssikdysrq----ltniflkdkv 47 (623) ++|-|+..|..|.+|.+|.---+.+.+...+ ....+-++++ T Consensus 27 liDvR~~e~~~ghIpgAi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (121) T 2j6p_A 27 VIDCRDSDRDCGFIVNSINMPTISCTEEMYEKLAKTLFEEKKELA 71 (121) T ss_dssp EEECCSTTGGGCBCTTCEECCTTTCCHHHHHHHHHHHHHTTCCEE T ss_pred EEECCHHHHCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE T ss_conf 998983786678028760578077888778887655554057626 No 6 >>1x1i_A Xanthan lyase; alpha/alpha barrel, beta sandwich; HET: 46M; 1.80A {Bacillus SP} (A:203-357) Probab=13.73 E-value=72 Score=12.09 Aligned_cols=82 Identities=11% Similarity=0.066 Sum_probs=52.1 Q ss_pred HHHCCEEEEECCCCCHHHHCCCCCCCCCCCCHHHHHHCCCCCCC----CCCCCCCCCHHCCHHHHCCCHHHHHHCCCCHH Q ss_conf 22066044411762100104311566653210112103357620----01222255101013430342024530363035 Q gi|254780284|r 368 FEEGGKKYLFNSNTEGIARGISINRDCSLGDDVHRENMFSAPEI----SVDGFHEGSSLVSPALKSNSKRDVAQNRKFWL 443 (623) Q Consensus 368 feeggkkylfnsntegiargisinrdcslgddvhrenmfsapei----svdgfhegsslvspalksnskrdvaqnrkfwl 443 (623) +.+|=..++++...--..+|-+|-|.-+.+-.+-++-|.+.-.+ +-+.--+=.+++--.+.++...+...+|.||- T Consensus 62 i~~g~~~~~~~g~~~~~v~GR~isR~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~f~~ 141 (155) T 1x1i_A 62 IYEAYRPLLYKGAMMDMVRGREISRSYAQDHAVGHGIVASIVRLAQFAPAPHAAAFKQIAKRVIQEDTFSSFYGDVSTDT 141 (155) T ss_dssp HHHTTGGGEETTEECGGGSGGGGGCTTCCHHHHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHCCSSCGGGGSCHHH T ss_pred HHHHHHHHEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH T ss_conf 99741543367721622478742256655432268999999998642897889999999987530465321123456578 Q ss_pred HHHHHH Q ss_conf 889999 Q gi|254780284|r 444 IGYILI 449 (623) Q Consensus 444 igyili 449 (623) +.|..- T Consensus 142 ~d~~~~ 147 (155) T 1x1i_A 142 IRLAKA 147 (155) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999998 No 7 >>2hjj_A Hypothetical protein YKFF; structure, northeast structural genomics consortium (NESG), protein structure initiative., PSI-2; NMR {Escherichia coli K12} (A:) Probab=10.07 E-value=95 Score=11.37 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=13.6 Q ss_pred CCCCCCCEEEECCCCCCCC Q ss_conf 0354341566336753212 Q gi|254780284|r 215 LEGKKENIFLADDQGISLK 233 (623) Q Consensus 215 legkkenifladdqgislk 233 (623) ....-.|+|+.||||+-.. T Consensus 20 V~a~Y~NV~IEDDQgtHFR 38 (87) T 2hjj_A 20 VTTTYSNITLEDDQGSHFR 38 (87) T ss_dssp HHHHCTTEEEESCSSSCCE T ss_pred HHHHHCCEEEECCCCCEEE T ss_conf 9988516023248987589 No 8 >>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} (A:107-167) Probab=9.64 E-value=60 Score=12.58 Aligned_cols=10 Identities=50% Similarity=1.152 Sum_probs=7.2 Q ss_pred CCCCCCCCCC Q ss_conf 3111346433 Q gi|254780284|r 14 SFRIGQFPSS 23 (623) Q Consensus 14 sfrigqfpss 23 (623) .|.+||||+- T Consensus 18 ~fHlGq~Ptl 27 (61) T 1pby_A 18 NFHLGQFPTL 27 (61) T ss_dssp HHHHHHCGGG T ss_pred HHHCCCCCHH T ss_conf 5230357427 No 9 >>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} (A:169-183,A:275-399) Probab=9.31 E-value=1e+02 Score=11.19 Aligned_cols=41 Identities=27% Similarity=0.451 Sum_probs=17.6 Q ss_pred CCCCCCHHHHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHHHHH Q ss_conf 4334212345788887776566----30014431267899988641 Q gi|254780284|r 21 PSSIPSLDSSIKDYSRQLTNIF----LKDKVFFDGLEQELLASLGS 62 (623) Q Consensus 21 pssipsldssikdysrqltnif----lkdkvffdgleqellaslgs 62 (623) +.+||-+.++-..|- +|-||| .+|.--|-+.-+++|.++|. T Consensus 64 ~G~lPDM~s~T~~YI-~LQ~IY~~KA~~D~~~v~~~v~~~l~~~g~ 108 (140) T 1tt5_A 64 RGTIPDMIADSGKYI-KLQNVYREKAKKDAAAVGNHVAKLLQSIGQ 108 (140) T ss_dssp CCCCCCCSSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC T ss_pred CCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC T ss_conf 998887123626489-999999998885799999999989987068 No 10 >>1gpi_A Exoglucanase I; hydrolase, glycosidase, cellulase, beta-glucanase, glycoprotein, cellulose degradation, enzyme, reaction center; HET: NAG; 1.32A {Phanerochaete chrysosporium} (A:38-78,A:162-200) Probab=9.07 E-value=99 Score=11.27 Aligned_cols=12 Identities=50% Similarity=0.800 Sum_probs=8.4 Q ss_pred HHHHCCCHHHHC Q ss_conf 776313113420 Q gi|254780284|r 204 MAKYGTGMSSAL 215 (623) Q Consensus 204 makygtgmssal 215 (623) .||||||.-.|- T Consensus 41 YAkYGtGYCDaq 52 (80) T 1gpi_A 41 YAKYGTGYCDSQ 52 (80) T ss_dssp HGGGTCCCCBTT T ss_pred CCCCCCCCCCCC T ss_conf 332467634445 Done!