RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780284|ref|YP_003064697.1| hypothetical protein
CLIBASIA_00845 [Candidatus Liberibacter asiaticus str. psy62]
         (623 letters)



>gnl|CDD|39668 KOG4467, KOG4467, KOG4467, Uncharacterized conserved protein
           [Function unknown].
          Length = 557

 Score = 32.5 bits (73), Expect = 0.32
 Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 20/186 (10%)

Query: 72  ARKKRSQRSPEDQLPSSKHLSPRFGSAHENFFDCDLENKPFPVETVVEKKENVDKSLQSK 131
           A K  S  +       SK  S  +G    +F D D E     +E V  KK    KS   K
Sbjct: 79  AAKPNSDTADVSDGGRSKWRSNGYGDIGYDFDDSDSEIAVLKLEEV--KKPKPKKSK--K 134

Query: 132 PSTDLLVQATSFLKESVIDYPDCDSEIMRGLDDDLDRCFEKKDRTSAIQLDKTE-EILKG 190
           P   L   A           P      +      L    E   +TSA  +++   E L  
Sbjct: 135 PKVSLQEAACKI-------DPLNLLAFLVEASSPLSHIPEPVYKTSADWINQRPIEALGA 187

Query: 191 ELTDKTDSSFSDSMAK------YGTGMSSALEGKKENIFLADDQGISLKSKEDMLTLDIQ 244
            +   TD    D  ++         G+  +    +  IF+A    + L+ K D LT  + 
Sbjct: 188 FVLWLTDCILVDLASQQGGRKGGKKGLQQSSSKSQVAIFVA--LAMVLRQKPDALTNSLP 245

Query: 245 SLEKSP 250
           +L ++P
Sbjct: 246 TLRENP 251


>gnl|CDD|31644 COG1455, CelB, Phosphotransferase system cellobiose-specific
           component IIC [Carbohydrate transport and metabolism].
          Length = 432

 Score = 29.4 bits (66), Expect = 3.4
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 443 LIGYILIVVGCGIYWFFQLHREISFANEKPLIVNAIKDPMKVIPSSSEEENDTSFNQVHE 502
           L G ++I     + WFF +H           IV  I DP   I  ++  EN  ++     
Sbjct: 225 LPGVLIIAFLVSLLWFFGIH--------GASIVGPIVDP---ILLANMLENAAAYQAGEP 273

Query: 503 V 503
           +
Sbjct: 274 L 274


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.311    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 7,029,764
Number of extensions: 362541
Number of successful extensions: 631
Number of sequences better than 10.0: 1
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 16
Length of query: 623
Length of database: 6,263,737
Length adjustment: 100
Effective length of query: 523
Effective length of database: 4,102,837
Effective search space: 2145783751
Effective search space used: 2145783751
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.2 bits)