RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter asiaticus str. psy62] (623 letters) >gnl|CDD|39668 KOG4467, KOG4467, KOG4467, Uncharacterized conserved protein [Function unknown]. Length = 557 Score = 32.5 bits (73), Expect = 0.32 Identities = 43/186 (23%), Positives = 65/186 (34%), Gaps = 20/186 (10%) Query: 72 ARKKRSQRSPEDQLPSSKHLSPRFGSAHENFFDCDLENKPFPVETVVEKKENVDKSLQSK 131 A K S + SK S +G +F D D E +E V KK KS K Sbjct: 79 AAKPNSDTADVSDGGRSKWRSNGYGDIGYDFDDSDSEIAVLKLEEV--KKPKPKKSK--K 134 Query: 132 PSTDLLVQATSFLKESVIDYPDCDSEIMRGLDDDLDRCFEKKDRTSAIQLDKTE-EILKG 190 P L A P + L E +TSA +++ E L Sbjct: 135 PKVSLQEAACKI-------DPLNLLAFLVEASSPLSHIPEPVYKTSADWINQRPIEALGA 187 Query: 191 ELTDKTDSSFSDSMAK------YGTGMSSALEGKKENIFLADDQGISLKSKEDMLTLDIQ 244 + TD D ++ G+ + + IF+A + L+ K D LT + Sbjct: 188 FVLWLTDCILVDLASQQGGRKGGKKGLQQSSSKSQVAIFVA--LAMVLRQKPDALTNSLP 245 Query: 245 SLEKSP 250 +L ++P Sbjct: 246 TLRENP 251 >gnl|CDD|31644 COG1455, CelB, Phosphotransferase system cellobiose-specific component IIC [Carbohydrate transport and metabolism]. Length = 432 Score = 29.4 bits (66), Expect = 3.4 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 443 LIGYILIVVGCGIYWFFQLHREISFANEKPLIVNAIKDPMKVIPSSSEEENDTSFNQVHE 502 L G ++I + WFF +H IV I DP I ++ EN ++ Sbjct: 225 LPGVLIIAFLVSLLWFFGIH--------GASIVGPIVDP---ILLANMLENAAAYQAGEP 273 Query: 503 V 503 + Sbjct: 274 L 274 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.311 0.131 0.358 Gapped Lambda K H 0.267 0.0583 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 7,029,764 Number of extensions: 362541 Number of successful extensions: 631 Number of sequences better than 10.0: 1 Number of HSP's gapped: 631 Number of HSP's successfully gapped: 16 Length of query: 623 Length of database: 6,263,737 Length adjustment: 100 Effective length of query: 523 Effective length of database: 4,102,837 Effective search space: 2145783751 Effective search space used: 2145783751 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 60 (27.2 bits)