RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780284|ref|YP_003064697.1| hypothetical protein
CLIBASIA_00845 [Candidatus Liberibacter asiaticus str. psy62]
         (623 letters)



>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
           hydrolase; 2.72A {Shigella flexneri 2A} (A:)
          Length = 280

 Score = 30.2 bits (66), Expect = 0.67
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 5/46 (10%)

Query: 308 SDIEKSESQGPVFDLKKIVRFEEYPKDMDELVISSLLVDEEKLSLE 353
            D+      G   +L  ++   E+    D L ++  LV     SL+
Sbjct: 7   GDV-----HGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLD 47


>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA
           binding protein; 1.00A {Staphylococcus aureus subsp}
           (A:)
          Length = 130

 Score = 27.8 bits (61), Expect = 3.7
 Identities = 8/117 (6%), Positives = 30/117 (25%), Gaps = 4/117 (3%)

Query: 347 EEKLSLEKVNHSLEQDIATLSFEEGGKKYLFNSNTEGIARGISINR--DCSLGDDVHREN 404
              ++L ++          L   E  +     +               +      +    
Sbjct: 14  RLGMTLTELEQRTGIKREMLVHIENNEFDQLPNKNYSEGFIRKYASVVNIEPNQLIQAHQ 73

Query: 405 MFSAPEISVDGFHEGSSLVSPALKSNSKRDVAQNRKFWLIGYILIVVGCGIYWFFQL 461
                  +   + E  ++ +     + K    +  +  +I  I +++   ++    L
Sbjct: 74  --DEIPSNQAEWDEVITVFNNNKDLDYKSKSKEPIQLLVIMGITVLITLLLWIMLVL 128


>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD
           superfamily, structural genomics; 1.85A {Pyrococcus
           horikoshii OT3} (A:1-69,A:202-263)
          Length = 131

 Score = 27.4 bits (61), Expect = 5.0
 Identities = 8/41 (19%), Positives = 16/41 (39%)

Query: 370 EGGKKYLFNSNTEGIARGISINRDCSLGDDVHRENMFSAPE 410
           E G  + F +N       +   +   +G DV    + ++ E
Sbjct: 31  ERGIPFAFLTNNSTKTPEMYREKLLKMGIDVSSSIIITSGE 71


>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
           translation termination, ATP-binding, cytoplasm,
           hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
           (A:1-326)
          Length = 326

 Score = 27.1 bits (59), Expect = 7.0
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 543 PSIIENSIRDIQAVSQ 558
           P ++ N  R++   SQ
Sbjct: 151 PLLLSNPPRNMIGQSQ 166


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.311    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 4,267,717
Number of extensions: 189724
Number of successful extensions: 238
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 6
Length of query: 623
Length of database: 4,956,049
Length adjustment: 94
Effective length of query: 529
Effective length of database: 1,778,379
Effective search space: 940762491
Effective search space used: 940762491
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.2 bits)