RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780284|ref|YP_003064697.1| hypothetical protein
CLIBASIA_00845 [Candidatus Liberibacter asiaticus str. psy62]
(623 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 61.1 bits (148), Expect = 7e-10
Identities = 113/710 (15%), Positives = 191/710 (26%), Gaps = 326/710 (45%)
Query: 14 SFRI--GQFPSSIPSLDSSIKDYSRQLTNIFLKD-KVFFDGLEQ--------ELLAS-LG 61
+ G + +S S QL F K +G EL+ LG
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIAS-QLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 62 SMGQEKFVSYARKKRSQRSPEDQLPSSKHLSPRFGSAHE------NFFDCD-LENK---- 110
+VS S P G + F+ LE
Sbjct: 67 ------YVS------SLVEPSKV-----------GQFDQVLNLCLTEFENCYLEGNDIHA 103
Query: 111 -----PFPVETVVEKKENVDKS-------LQSKPSTDLLVQATSFLKESVIDYPDCDSEI 158
+T + K + + K+ + ++ S L +V + ++++
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDK----KSNSALFRAV---GEGNAQL 156
Query: 159 M-----RGLDDDLDRCFEK------------KD--RTSAIQLDKTEEILKGELTDKTDSS 199
+ +G DD FE+ D + SA L EL +T
Sbjct: 157 VAIFGGQGNTDD---YFEELRDLYQTYHVLVGDLIKFSAETLS--------ELI-RTTLD 204
Query: 200 FSDSMAKYGTGMSSALEGKKENIFLADDQGIS-LKSKEDMLTLDIQSLEKSPVDDCG-IS 257
+ G+ NI + L++ + T D L P+ C I
Sbjct: 205 AEKV---FTQGL---------NI-------LEWLENPSN--TPDKDYLLSIPIS-CPLIG 242
Query: 258 LTE-------------SPKK---RL-GS--HS-------AI---DD-DLGLDFGDIEKEL 287
+ + +P + L G+ HS AI D + F ++
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE---SFFVSVRKA 299
Query: 288 LSIS---GCANRESDSRDQE---KKS---SDIEKSESQGPVFDLKKIVRFEEYPKDMDEL 338
+++ G R E S S +E S E P M L
Sbjct: 300 ITVLFFIGV-------RCYEAYPNTSLPPSILEDSLENN-----------EGVPSPM--L 339
Query: 339 VISSLLVDE-EKLSLEKVNHSL--EQDIATLSFEEGGKKYLFNSNTE----GIA---RGI 388
IS+L ++ + + K N L + + +S L N G G+
Sbjct: 340 SISNLTQEQVQDY-VNKTNSHLPAGKQVE-IS--------LVNGAKNLVVSGPPQSLYGL 389
Query: 389 SIN-RD--CSLGDDVHR----------ENMF---SAPEISVDGFHEGSSLVSPALKSNSK 432
++ R G D R N F ++P FH S L+ PA
Sbjct: 390 NLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP------FH--SHLLVPA-SDLIN 440
Query: 433 RDVAQNRKFWLIGYILIVVGCGIYWFFQLHREISFANEKPLIVNAIKDPMKVIPSSSEEE 492
+D+ + +SF K + IP
Sbjct: 441 KDLVK-------------------------NNVSFN-AKDI----------QIP------ 458
Query: 493 NDTSFNQVHEVYDRFSGEKPSSPKQKTLLNLQE---------------KPIDFP-VQNQE 536
VYD F G +L+ P+ + +
Sbjct: 459 ----------VYDTFDGS-----------DLRVLSGSISERIVDCIIRLPVKWETTTQFK 497
Query: 537 TSHYKSPSIIE-------------NSIRDIQAVSQVSVAENEDRSRSESI 573
+H I++ + +D V +V VA D + +
Sbjct: 498 ATH-----ILDFGPGGASGLGVLTHRNKDGTGV-RVIVAGTLDINPDDDY 541
Score = 51.5 bits (123), Expect = 6e-07
Identities = 83/396 (20%), Positives = 143/396 (36%), Gaps = 121/396 (30%)
Query: 276 LGLDFGDIEKELL---SISGCANRESDSRDQEKKS----SD--IEKSESQGPVFDLKKIV 326
L L G +E LL + A++ ++Q K ++ E P +L +
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQL---QEQFNKILPEPTEGFAADDEPTTPA-EL--VG 62
Query: 327 RFEEYPKDMDELVISSLLVDEEKLSLEKVNHSLEQDIATLSFEEGGKKYLFNSNTEGIAR 386
+F Y +SSL+ + ++V L + FE YL ++ +A
Sbjct: 63 KFLGY--------VSSLVEPSKVGQFDQV---LN--LCLTEFEN---CYLEGNDIHALAA 106
Query: 387 GISINRDCSLGDDVHR--ENMFSAPEISVDGFHEGSSLVSPALKSNSKRDVAQNRKFWLI 444
+ D +L +N +A ++ F + S+ AL AQ
Sbjct: 107 KLLQENDTTLVK-TKELIKNYITARIMAKRPFDKKSN---SALFRAVGEGNAQ------- 155
Query: 445 GYILIVV--GCGIY--WFFQLHREISFANEKPLIVNAIKDPMKVI------PSSSEEEND 494
L+ + G G +F +L R++ + L+ D +K + + +
Sbjct: 156 ---LVAIFGGQGNTDDYFEEL-RDL-YQTYHVLV----GDLIKFSAETLSELIRTTLDAE 206
Query: 495 TSFNQVHEVYDRFSGEKPSS-PKQKTLLNLQEKPIDFP----VQNQETSHY--------K 541
F Q + + PS+ P + LL++ PI P +Q +HY
Sbjct: 207 KVFTQGLNILEWLEN--PSNTPDKDYLLSI---PISCPLIGVIQ---LAHYVVTAKLLGF 258
Query: 542 SPSIIENSIRD-IQAV---SQ-----VSVAENEDRSRS-ESII--VEKEIPQL------S 583
+P E +R ++ SQ V++AE + S ES V K I L
Sbjct: 259 TPG--E--LRSYLKGATGHSQGLVTAVAIAE----TDSWESFFVSVRKAITVLFFIGVRC 310
Query: 584 QQ--------SSFLMDNKENFQGVDS--LQI-NLSK 608
+ S L D+ EN +GV S L I NL++
Sbjct: 311 YEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQ 346
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.020
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
Query: 4 EKEFLDKRDASFRIGQFP-SSIPSLDSSIK 32
EK+ L K AS ++ + S P+L +IK
Sbjct: 18 EKQALKKLQASLKL--YADDSAPAL--AIK 43
Score = 33.4 bits (75), Expect = 0.14
Identities = 14/71 (19%), Positives = 20/71 (28%), Gaps = 41/71 (57%)
Query: 348 EKLSLEKVNHSLEQDIATLSFEEGGKKYLFNSNTEGIARGISINRDCSLGDDVHRENMFS 407
EK +L+K+ SL K Y DD S
Sbjct: 18 EKQALKKLQASL-------------KLY---------------------ADD-------S 36
Query: 408 APEISVDGFHE 418
AP +++ E
Sbjct: 37 APALAIKATME 47
>1pq1_A Apoptosis regulator BCL-X; BCL-XL/BIM, apoptosis; 1.65A {Mus
musculus} SCOP: f.1.4.1 PDB: 1pq0_A 2bzw_A 1af3_A 2pon_B
2p1l_A
Length = 196
Score = 28.8 bits (64), Expect = 3.5
Identities = 17/139 (12%), Positives = 38/139 (27%), Gaps = 13/139 (9%)
Query: 66 EKFVSYARKKRSQRSPEDQLPSSKHLSPRFGSAHENFFDCDLENKPFPVETVVEKKENVD 125
F+SY K SQ+ S R + E + + + +
Sbjct: 10 VDFLSY---KLSQKGYSWSQFSDVE-ENRTEAPEETEAE-------RETPSAINGNPSWH 58
Query: 126 KSLQSKPSTDLLVQATSFLKESVIDYPDCDSEIMRGLDDDLDRCFEKKDRTSAIQLDKTE 185
+ + ++ +E + + +R D+ + + + QL T
Sbjct: 59 LADSPAVNGATGHSSSLDAREVIP--MAAVKQALREAGDEFELRYRRAFSDLTSQLHITP 116
Query: 186 EILKGELTDKTDSSFSDSM 204
+ F D +
Sbjct: 117 GTAYQSFEQVVNELFRDGV 135
>1rf6_A 5-enolpyruvylshikimate-3-phosphate synthase; shikimate pathway,
EPSP synthase, glyphosate, PEP, transferase; HET: GPJ
S3P; 1.90A {Streptococcus pneumoniae} SCOP: d.68.2.2
PDB: 1rf5_A 1rf4_A*
Length = 427
Score = 27.9 bits (61), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 602 LQINLSKLKGNIPVP--RSYSNRS 623
L+ N+ L G I VP +S S+RS
Sbjct: 3 LKTNIRHLHGIIRVPGDKSISHRS 26
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.311 0.131 0.358
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 4,942,729
Number of extensions: 228450
Number of successful extensions: 359
Number of sequences better than 10.0: 1
Number of HSP's gapped: 356
Number of HSP's successfully gapped: 9
Length of query: 623
Length of database: 5,693,230
Length adjustment: 98
Effective length of query: 525
Effective length of database: 3,317,318
Effective search space: 1741591950
Effective search space used: 1741591950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.2 bits)