RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780284|ref|YP_003064697.1| hypothetical protein
CLIBASIA_00845 [Candidatus Liberibacter asiaticus str. psy62]
         (623 letters)



>d1pq1a_ f.1.4.1 (A:) Apoptosis regulator Bcl-xL {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 196

 Score = 27.2 bits (60), Expect = 3.6
 Identities = 17/139 (12%), Positives = 38/139 (27%), Gaps = 13/139 (9%)

Query: 66  EKFVSYARKKRSQRSPEDQLPSSKHLSPRFGSAHENFFDCDLENKPFPVETVVEKKENVD 125
             F+SY   K SQ+       S      R  +  E   +           + +    +  
Sbjct: 10  VDFLSY---KLSQKGYSWSQFSD-VEENRTEAPEETEAE-------RETPSAINGNPSWH 58

Query: 126 KSLQSKPSTDLLVQATSFLKESVIDYPDCDSEIMRGLDDDLDRCFEKKDRTSAIQLDKTE 185
            +     +      ++   +E +        + +R   D+ +  + +       QL  T 
Sbjct: 59  LADSPAVNGATGHSSSLDAREVIP--MAAVKQALREAGDEFELRYRRAFSDLTSQLHITP 116

Query: 186 EILKGELTDKTDSSFSDSM 204
                      +  F D +
Sbjct: 117 GTAYQSFEQVVNELFRDGV 135


>d1rf6a_ d.68.2.2 (A:) 5-enol-pyruvyl shikimate-3-phosphate (EPSP)
           synthase {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 427

 Score = 27.1 bits (59), Expect = 4.3
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 602 LQINLSKLKGNIPVP--RSYSNRS 623
           L+ N+  L G I VP  +S S+RS
Sbjct: 3   LKTNIRHLHGIIRVPGDKSISHRS 26


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.131    0.358 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,124,950
Number of extensions: 98542
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 4
Length of query: 623
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 532
Effective length of database: 1,158,166
Effective search space: 616144312
Effective search space used: 616144312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.8 bits)