HHsearch alignment for GI: 254780285 and conserved domain: COG0008

>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis].
Probab=99.10  E-value=1.6e-09  Score=85.71  Aligned_cols=114  Identities=24%  Similarity=0.218  Sum_probs=61.8

Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCC
Q ss_conf             22222102465213568889999997522555433367776136899999999972266345115311011012211000
Q gi|254780285|r  319 DVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPI  398 (586)
Q Consensus       319 ~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~  398 (586)
T Consensus       181 ~~d-v~~r~dg~ptY~---favvvDD~~mgITHv--iRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~--li~~-~~g~--  249 (472)
T COG0008         181 PDF-VILRYDGYPTYN---FAVVVDDHLMGITHV--LRGEDHLDNTPRQIWLYEALGWPPPVYAHLP--LLLN-EDGK--  249 (472)
T ss_pred             CCC-EEECCCCCCCCC---EEEEECHHHCCCCEE--EECHHHCCCCHHHHHHHHHCCCCCCCEEEEE--EEEC-CCCC--
T ss_conf             756-042477774543---002610321688637--7344420478999999997399998279751--0466-8878--


Q ss_pred             CCCCCCCCHHHHHHHHHH----------H-----HH--H---------HHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             001223302456777776----------3-----21--1---------234555420001233344777653
Q gi|254780285|r  399 KMSKRAGDFITLRHVVDE----------V-----GS--D---------SVRFMMLWRKNSELLDFDFCKVKE  444 (586)
Q Consensus       399 kmstR~G~~v~l~dll~e----------v-----g~--~---------aiky~~L~~~~~~~~~Fd~d~~l~  444 (586)
T Consensus       250 kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~e~~i~~fd~~~~~ks~a~fd~~kL~~  320 (472)
T COG0008         250 KLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDW  320 (472)
T ss_pred             EECCCCC-CCCCCHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf             3047667-6653025551889388999999846889820699989999875511210211610136877676