HHsearch alignment for GI: 254780285 and conserved domain: COG0525
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.64 E-value=1.3e-11 Score=100.44 Aligned_cols=171 Identities=18% Similarity=0.191 Sum_probs=115.1
Q ss_pred CEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 1153110110122110000012233024567777763211234555420-001233344777653202443678888888
Q gi|254780285|r 381 INVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR-KNSELLDFDFCKVKEQSKENPVFYVQYAYA 459 (586)
Q Consensus 381 ~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~-~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~a 459 (586)
T Consensus 510 k~V~ihGLVr-De~G~--KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~--~rnF~n-KlWNa~ 583 (877)
T COG0525 510 KDVYIHGLVR-DEQGR--KMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEG--YRNFLN-KLWNAT 583 (877)
T ss_pred CEEEEEEEEE-CCCCC--CCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHH--HHHHHH-HHHHHH
T ss_conf 2789811678-68888--87555788589799998848589999999536888665768899888--999999-987499
Q ss_pred HHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHH
Q ss_conf 8999987-533200246832234223552114998999999998421899999998528127999999999-98899987
Q gi|254780285|r 460 RCRSIFR-QAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLA-SVFHGHWS 537 (586)
Q Consensus 460 R~~SIlr-Ka~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La-~~Fn~fY~ 537 (586)
T Consensus 584 Rfv~~~~~~~~-------~~~~~~------~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~Yl 650 (877)
T COG0525 584 RFVLMNLDDLG-------PDDLDL------LALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYL 650 (877)
T ss_pred HHHHHCCCCCC-------CCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985254457-------654332------22354889999999999999999998623788999999996998989999
Q ss_pred HCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 068666665-435787899999999999999999998731587
Q gi|254780285|r 538 HGRENPRLR-FVQANNRKLTMMRLQLVHAVASIINSGLNIIGV 579 (586)
Q Consensus 538 ~~~~~~~~~-v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI 579 (586)
T Consensus 651 El-----~K~~l~~~~~~----~~~a~~tL~~vl~~~lrLLhP 684 (877)
T COG0525 651 EL-----AKPRLYGGEEE----KRAARATLYYVLDTLLRLLHP 684 (877)
T ss_pred HH-----HHHHHCCCHHH----HHHHHHHHHHHHHHHHHHHCC
T ss_conf 98-----21440285777----899999999999999998488