HHsearch alignment for GI: 254780285 and conserved domain: PRK05729
>PRK05729 valS valyl-tRNA synthetase; Reviewed.
Probab=99.63 E-value=1.8e-12 Score=106.41 Aligned_cols=173 Identities=19% Similarity=0.254 Sum_probs=108.2
Q ss_pred EEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 15311011012211000001223302456777776321123455542-00012333447776532024436788888888
Q gi|254780285|r 382 NVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLW-RKNSELLDFDFCKVKEQSKENPVFYVQYAYAR 460 (586)
Q Consensus 382 ~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~-~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR 460 (586)
T Consensus 508 ~v~~hG~v-~D~~G~--KMSKS~GNvidP~~vi~~yGaDalR~~l~~~~~~g~di~~~~~~v~~--~r~f~-nKlwN~~r 581 (877)
T PRK05729 508 DVYIHGLV-RDEQGR--KMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEG--YRNFA-NKLWNASR 581 (877)
T ss_pred HCCCCCEE-ECCCCC--CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHH--HHHHH-HHHHHHHH
T ss_conf 02004437-889887--78787889899899998719199999999707767660006899999--99999-99999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHC
Q ss_conf 999987533200246832234223552114998999999998421899999998528127999999999-9889998706
Q gi|254780285|r 461 CRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLA-SVFHGHWSHG 539 (586)
Q Consensus 461 ~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La-~~Fn~fY~~~ 539 (586)
T Consensus 582 f~~~--~~~~~----~~~-----~~~~~~~~~~~D~WIlskL~~~i~~v~~~~~~y~f~~a~~~ly~F~w~d~cdwYlE~ 650 (877)
T PRK05729 582 FVLM--NLEGQ----DPG-----FLPDEAELSLADRWILSRLNRTVAEVTEALDKYRFDEAAQALYEFIWNEFCDWYLEL 650 (877)
T ss_pred HHHH--HCCCC----CCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9997--24656----644-----456621067879999999999999998750002099999999998467557899999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 866666543578789999999999999999999873158
Q gi|254780285|r 540 RENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIG 578 (586)
Q Consensus 540 ~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLG 578 (586)
T Consensus 651 -~K~---rl~~~~~~~---~~~~~~~L~~vL~~~L~lLh 682 (877)
T PRK05729 651 -AKP---VLNGGDEAA---KRGTRATLAYVLEEILRLLH 682 (877)
T ss_pred -HHH---HHCCCCHHH---HHHHHHHHHHHHHHHHHHHC
T ss_conf -799---770887788---99999999999999999856