HHsearch alignment for GI: 254780285 and conserved domain: PRK11893
>PRK11893 methionyl-tRNA synthetase; Reviewed.
Probab=99.91 E-value=1.7e-20 Score=162.70 Aligned_cols=390 Identities=21% Similarity=0.252 Sum_probs=222.5
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 41000223443224411777778568999999998506664102014775314555678987532221024500066011
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
T Consensus 1 k~~~it~p~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~v~~~~GtD~hg~~i~~~A~-------~~------------ 61 (512)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIERKAE-------EA------------ 61 (512)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-------HC------------
T ss_conf 97899689998899734463587999999999999559970746871775199999999-------85------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHH
Q ss_conf 02410000127888887576413430237999999978998875455588708752100015887301045799999999
Q gi|254780285|r 201 YPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNL 280 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l 280 (586)
T Consensus 62 --g~~----p~e~------------------------~~~~~~~~~~~~~~l~i~~D~f~rT~~~--~~~~~v~~~f~~L 109 (512)
T PRK11893 62 --GIS----PQEL------------------------ADRNSASFKRLWEALNISYDDFIRTTDE--RHKEAVQEIFQRL 109 (512)
T ss_pred --CCC----HHHH------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHHHH
T ss_conf --999----9999------------------------9999999999999809988878779987--9999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCC------------------------CCCCCCCEEEEHHHCCCC-----------------
Q ss_conf 974985113426755565420------------------------002478156510110222-----------------
Q gi|254780285|r 281 ARQGYVYEGILPPPKSKTTQK------------------------CDMDRKQLLFRSTMVGDD----------------- 319 (586)
Q Consensus 281 ~~~g~~~e~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~g~~----------------- 319 (586)
T Consensus 110 ~~~G~iy~~~~~~~yc~~c~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~flkl~~~~~~l~~~~~~~~~~~~p~~~ 189 (512)
T PRK11893 110 LANGDIYLGKYSGWYCVRCEEFKTESEARLGEDGCPRCPIHGKPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPESR 189 (512)
T ss_pred HHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 76797743244432268864445777723665788655557997768724761120505467799997249865186999
Q ss_pred ------------CCCCCCCCC-----------CCHHHHHHH-----HHHHHHH-------HHCCCCCCCCCCCCCHHHHH
Q ss_conf ------------222210246-----------521356888-----9999997-------52255543336777613689
Q gi|254780285|r 320 ------------VDRPLLKSD-----------GSYTYFAAD-----LAYFKCK-------YERGFDNMIYVMGSDHSGYV 364 (586)
Q Consensus 320 ------------~d~vl~rsD-----------Gt~~Y~t~D-----iA~~~~k-------~e~~~d~~iyVv~~~Q~~h~ 364 (586)
T Consensus 190 ~~~~~~~l~~~l~d~~ISR~~~~WGi~vP~~~~~~~yvWfda~~~y~s~~~~~~~~~~~~~~~~w~~~vh~~G~Dii~-f 268 (512)
T PRK11893 190 RNEVINFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALLNYLTALGYDEPDLEELFRKYWPADVHLIGKDILR-F 268 (512)
T ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCCCC-H
T ss_conf 999999985778766152567878998888888620112531355677645887656478984487504323665120-1
Q ss_pred HHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
Q ss_conf 9999--999972266345115311011012211000001223302456777776321123455542000-1233344777
Q gi|254780285|r 365 KRLE--AVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN-SELLDFDFCK 441 (586)
Q Consensus 365 ~~v~--~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~-~~~~~Fd~d~ 441 (586)
T Consensus 269 H~~~~~a~l~~~~~~~p~-~~~~hg~l~~--~G~--KmSKS~Gn~I~~~d~l~~yg~D~lR~~L~~~~p~~~D~~Fs~~~ 343 (512)
T PRK11893 269 HAVYWPAFLMAAGLPLPK-RVFAHGFLTN--DGQ--KMSKSLGNVIDPFDLVDKFGVDAVRYFLLREIPFGQDGDFSEEA 343 (512)
T ss_pred HHHHHHHHHHHCCCCCCC-CCCCCEEEEE--CCC--EECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 388899999866999886-3431114887--571--50134787589999999859504028776328877787878999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 65320244367888888889999875332002468322342235521149989999999984218999999985281279
Q gi|254780285|r 442 VKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKL 521 (586)
Q Consensus 442 ~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l 521 (586)
T Consensus 344 f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~------------~~p~~~~~~~~d~~~~~~~~~~~~~v~~~~e~~~~~~a 411 (512)
T PRK11893 344 FINRINADLANDLGNLLSRTLSMIAKYFDG------------KVPEPGEFSEADAALLEKADAALEQVREAMDNFAFHKA 411 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998975899999999999999999875178------------78886658876899999999999999999971259999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHCCCCCC
Q ss_conf 999999999889998706866666543578789999999999999999-----------9998731587985
Q gi|254780285|r 522 AFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASI-----------INSGLNIIGVESP 582 (586)
Q Consensus 522 ~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~v-----------L~~~L~LLGI~~p 582 (586)
T Consensus 412 ~~~i~~~~~~~N~y~~~~~--P-W~l~k~d~~~~~~il~~~~~~~~~l~ill~P~~P~~ae~l~~~Lg~~~~ 480 (512)
T PRK11893 412 LEAILELAAEANKYIDEQA--P-WSLAKTDPERLATVLYTLLESLRIIAVLLQPVMPELSAKILDQLGLEED 480 (512)
T ss_pred HHHHHHHHHHHHHHHHHCC--C-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
T ss_conf 9999999999999988478--7-5331589999999999999999999999858435999999998499987