HHsearch alignment for GI: 254780285 and conserved domain: PRK12268
>PRK12268 methionyl-tRNA synthetase; Reviewed.
Probab=99.88 E-value=9.9e-19 Score=150.34 Aligned_cols=392 Identities=16% Similarity=0.217 Sum_probs=220.4
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 41000223443224411777778568-99999999850666410201477531455567898753222102450006601
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVV-GDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiI-Gdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
T Consensus 3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~-------k-~---------- 64 (558)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAE-------K-E---------- 64 (558)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-------H-C----------
T ss_conf 518984799888898552311141989999999998379987975840647499999999-------8-5----------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHH
Q ss_conf 10241000012788888757641343023799999997899887545558870875210001588730104579999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDN 279 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~ 279 (586)
T Consensus 65 ---g~~----p~e~------------------------~~~~~~~~~~~~~~lgis~D~f~rT~~~--~~~~~v~~~f~~ 111 (558)
T PRK12268 65 ---GVS----PQEL------------------------ADKYHEEHKEDFEKLGISYDNYTRTTSP--EHHELVQEFFLK 111 (558)
T ss_pred ---CCC----HHHH------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHHH
T ss_conf ---999----9999------------------------9999999999999819837768668988--999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCC------------------------------------------------CCCCCCEEE
Q ss_conf 99749851134267555654200------------------------------------------------024781565
Q gi|254780285|r 280 LARQGYVYEGILPPPKSKTTQKC------------------------------------------------DMDRKQLLF 311 (586)
Q Consensus 280 l~~~g~~~e~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~ 311 (586)
T Consensus 112 L~~~G~iy~~~~~~~yc~~~~~fl~d~~v~G~cP~c~~~~~~Gd~ce~cg~~~~~~dli~p~~~~~g~~~e~~~~~~~f~ 191 (558)
T PRK12268 112 LYENGYIEKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEKARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFL 191 (558)
T ss_pred HHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCEEE
T ss_conf 99889933013534368411231312331540677687435673253247647857724885677899444773453021
Q ss_pred EHHHCCCC---------------------------CCCCCCC------------CCCCHH---------HHHHHHHHHHH
Q ss_conf 10110222---------------------------2222102------------465213---------56888999999
Q gi|254780285|r 312 RSTMVGDD---------------------------VDRPLLK------------SDGSYT---------YFAADLAYFKC 343 (586)
Q Consensus 312 ~~~~~g~~---------------------------~d~vl~r------------sDGt~~---------Y~t~DiA~~~~ 343 (586)
T Consensus 192 ~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~D~~ISR~~~WGipiP~~~~~~~~iyVW~Da~~~yis~~~~~~~~ 271 (558)
T PRK12268 192 DLPAFQEALRKWIESGTDWPPNVLNFTLNWLKEGLKPRAITRDLPWGIPIPFEGAEGKVFYVWFDAPIGYISATKEWAKR 271 (558)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 41877899999985388778899999999986337565455538786578855568967988657872203433654541
Q ss_pred H-----HH---CCC-CCCCCCCCCCHHHHHHHHH--HHHHHHCC--CCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 7-----52---255-5433367776136899999--99997226--6345115311011012211000001223302456
Q gi|254780285|r 344 K-----YE---RGF-DNMIYVMGSDHSGYVKRLE--AVAAAVSE--KKAQINVLLCELVRLYRDGMPIKMSKRAGDFITL 410 (586)
Q Consensus 344 k-----~e---~~~-d~~iyVv~~~Q~~h~~~v~--~~~~~lg~--~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l 410 (586)
T Consensus 272 ~~~~~~~~~~W~~~~~~~~~f~GkDi-i~FH~v~wpa~l~a~~~~~~lP~-~i~~~g~~~~--~G~--KmSKS~Gnvi~p 345 (558)
T PRK12268 272 KGDPEAWKEFWLDSDTKYYYFIGKDN-IPFHSVIWPAMLLGSGEPYKLPT-AIVSSEYLTY--EGQ--KFSKSRGWGIWV 345 (558)
T ss_pred CCCHHHHHHHCCCCCCEEEEECCCCC-CHHHHHHHHHHHHHCCCCCCCCC-EEEEEEEEEE--CCC--CCCCCCCCCCCH
T ss_conf 69856798727899842776436665-43478799999973379877887-7877556874--684--114557887798
Q ss_pred HHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 77777632112345554200-01233344777653202443678888888899998753320024683223422355211
Q gi|254780285|r 411 RHVVDEVGSDSVRFMMLWRK-NSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQES 489 (586)
Q Consensus 411 ~dll~evg~~aiky~~L~~~-~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~ 489 (586)
T Consensus 346 ~~~i~~yg~D~lRy~L~~~~~~~~D~~fs~~~~~~~~N~dL~~~~gNl~~R~~~~~~k~~~g------------~~p~~~ 413 (558)
T PRK12268 346 DDALERLPPDYLRYYLAANAPENSDTDFTWEEFIRRVNSELADKYGNLVNRVLSFIEKNFGG------------EVPEPG 413 (558)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------CCCCCC
T ss_conf 99998749077789988548888888879999999999999999999999999999986589------------789876
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 49989999999984218999999985281279999999999889998706866666543578789999999999999999
Q gi|254780285|r 490 EFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASI 569 (586)
Q Consensus 490 ~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~v 569 (586)
T Consensus 414 ~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~~~~~N~y~~~~~--P-W~l~k~d~~~~~~vl~~~l~~lr~~ 490 (558)
T PRK12268 414 ELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMELARLANKYLNEKA--P-WKLAKTDPERAAAVLYTALNLVKLL 490 (558)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC--C-HHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 798565999999999999999999751799999999999999999998379--8-5431689999999999999999999
Q ss_pred -----------HHHHHHHCCCCCCCC
Q ss_conf -----------999873158798544
Q gi|254780285|r 570 -----------INSGLNIIGVESPNE 584 (586)
Q Consensus 570 -----------L~~~L~LLGI~~per 584 (586)
T Consensus 491 ~ilL~P~mP~~se~i~~~Lg~~~~~~ 516 (558)
T PRK12268 491 AILLYPFLPFSAEKIWEMLGLPNIEK 516 (558)
T ss_pred HHHHHCHHHHHHHHHHHHCCCCCCCC
T ss_conf 99986740399999999849997755