HHsearch alignment for GI: 254780285 and conserved domain: PRK12418
>PRK12418 cysteinyl-tRNA synthetase; Provisional.
Probab=99.01 E-value=5.6e-09 Score=81.92 Aligned_cols=306 Identities=17% Similarity=0.190 Sum_probs=159.6
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
T Consensus 7 g~~V~mY~CGPTVYd~~HiGhaRt~v~fD~l~R~L~~~gy~V~~v~NiTDV----------------------------- 57 (384)
T PRK12418 7 GGTATMYVCGITPYDATHLGHAATYLAFDLVQRVWLDAGHDVHYVQNVTDV----------------------------- 57 (384)
T ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-----------------------------
T ss_conf 996899966886888854233516899999999999809964999810506-----------------------------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CEECHHHHHHCCHHHHHHHHH
Q ss_conf 1024100001278888875764134302379999999789988754555887087521-000158873010457999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHD-IFISEDDFHRGDPSPIRDIID 278 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD-~~~~Es~~~~~~~~~i~~~i~ 278 (586)
T Consensus 58 ----------DDKii~~A~~~g~-----~----~~el-a~~~~~~f~~d~~~Lnv~~p~~~praTe~I----~~ii~~I~ 113 (384)
T PRK12418 58 ----------DDPLLERAARDGV-----D----WRDL-AAREIALFREDMAALRVLPPRDYVGAVESI----PEVVELVE 113 (384)
T ss_pred ----------CHHHHHHHHHHCC-----C----HHHH-HHHHHHHHHHHHHHCCCCCCCEECCCCCCH----HHHHHHHH
T ss_conf ----------3899999998593-----9----9999-999999999999982999995003211379----99999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHC---CC----CCCCCCC--C-CCCCH-HHHHHHHH-HHHHHHH
Q ss_conf 99974985113426755565420002478156510110---22----2222210--2-46521-35688899-9999752
Q gi|254780285|r 279 NLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMV---GD----DVDRPLL--K-SDGSY-TYFAADLA-YFKCKYE 346 (586)
Q Consensus 279 ~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~----~~d~vl~--r-sDGt~-~Y~t~DiA-~~~~k~e 346 (586)
T Consensus 114 ~Li~~G~AY~~~~~------------~~G~VYFdv~~~~~YG~ls~~~~~~~~~~~~e~~~~~~~~~Kr~p~DFaLWK~~ 181 (384)
T PRK12418 114 KLLASGAAYVVDDP------------EYGDVYFSVDATPQFGYESGYDRETMLELFAERGGDPDRPGKRDPLDALLWRAA 181 (384)
T ss_pred HHHHCCCEEECCCC------------CCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCC
T ss_conf 99967955775688------------888689995242211450159989998775331577543357886660355757
Q ss_pred CC---------------------------CCCCCCCCCC-------CHHHHHHHHHHHHHHHCCC-CCCCEEEECCHHHC
Q ss_conf 25---------------------------5543336777-------6136899999999972266-34511531101101
Q gi|254780285|r 347 RG---------------------------FDNMIYVMGS-------DHSGYVKRLEAVAAAVSEK-KAQINVLLCELVRL 391 (586)
Q Consensus 347 ~~---------------------------~d~~iyVv~~-------~Q~~h~~~v~~~~~~lg~~-~~~~~~~~~~~v~l 391 (586)
T Consensus 182 ~~gEp~W~SPWG~GRPGWHIECSaMs~~~LG~~~DIHgGG~DL~FPHHENEiAQsea~---~g~~~~a~y-W~H~g~l~~ 257 (384)
T PRK12418 182 RPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAA---TGERRFARH-YVHAGMIGL 257 (384)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH---HCCCHHHHH-HHHHCEEEE
T ss_conf 7778887699888088430565899998759976784686256588835499999986---589748788-860042668
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2211000001223302456777776-321123455542000123334477765320244367888888889999875332
Q gi|254780285|r 392 YRDGMPIKMSKRAGDFITLRHVVDE-VGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKD 470 (586)
Q Consensus 392 ~~dg~~~kmstR~G~~v~l~dll~e-vg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~ 470 (586)
T Consensus 258 --~ge--KMSKSlGN~i~i~dl~~~g~~p~~~R~~lL~~hYR~~l~fs~~~l~~-A~~-~-------l~r~~~a~~~~~- 323 (384)
T PRK12418 258 --DGE--KMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRSDREWTDAVLAE-AEA-R-------LARWRAATALPA- 323 (384)
T ss_pred --CCE--ECCCCCCCEEEHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH-HHH-H-------HHHHHHHHHCCC-
T ss_conf --886--74566887146999986389879999999705679976889999999-999-9-------999999871667-
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 00246832234223552114998999999998421899999998528127999999999988999
Q gi|254780285|r 471 IFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGH 535 (586)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~f 535 (586)
T Consensus 324 --------------------~~~~~-~~---~~~---~~~al~DDlNTP~Ala~l~~l~~~~n~~ 361 (384)
T PRK12418 324 --------------------GPDAA-DV---VAR---VREYLADDLDTPGALAAVDGWATDALEY 361 (384)
T ss_pred --------------------CCCHH-HH---HHH---HHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf --------------------88668-89---999---9999874265589999999999999732