HHsearch alignment for GI: 254780285 and conserved domain: PRK12558
>PRK12558 glutamyl-tRNA synthetase; Provisional.
Probab=99.40 E-value=2e-12 Score=106.06 Aligned_cols=126 Identities=18% Similarity=0.254 Sum_probs=71.6
Q ss_pred CCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCHHH-HHHHHHHHHHHHCCCCC
Q ss_conf 0247815651011022222221024652135688899999975225554333--67776136-89999999997226634
Q gi|254780285|r 303 DMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIY--VMGSDHSG-YVKRLEAVAAAVSEKKA 379 (586)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iy--Vv~~~Q~~-h~~~v~~~~~~lg~~~~ 379 (586)
T Consensus 167 D~v~G~i~~~~~~~~---D~Vi~rsDG~ptY~lA---~VV---D-D~~m~IthviRg~d~l~~t~~~~-~l~~alg~~~p 235 (461)
T PRK12558 167 DLVRGPQTVDLASLS---DPVLVREDGTYLYTLP---SVV---D-DIDMGVTHIIRGDDHVTNTGVQI-ALFRALGAEPP 235 (461)
T ss_pred ECCCCEEEECCCCCC---CEEEEECCCCCEEEEE---EEE---C-CCCCCCCEEEECHHHHHHCHHHH-HHHHHHCCCCC
T ss_conf 014630673343458---8289934897103455---785---5-75578854463685886159999-99999579998
Q ss_pred CCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH-----------HHHHHHHHHHCCHHHH
Q ss_conf 5115311011012211000001223302456777776-------------321-----------1234555420001233
Q gi|254780285|r 380 QINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS-----------DSVRFMMLWRKNSELL 435 (586)
Q Consensus 380 ~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~-----------~aiky~~L~~~~~~~~ 435 (586)
T Consensus 236 ~~~h~pl--i-~~~~g~--klskR~g~-~sv~~yr~~GylPeAl~NyLalLGWs~~~~Ei~sl~eli~~Fdl~~i~kS~A 309 (461)
T PRK12558 236 VFGHHNL--L-TTASGE--GLSKRTGA-LSVGSLREAGYEPMAVASLAVLLGTSENVDAAPDMAALAEHFDLASVSRSSA 309 (461)
T ss_pred EEEECCE--E-ECCCCC--CCCCCCCC-CCHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCEECCCCCCCCC
T ss_conf 0897134--5-689998--16666897-5899999879984789999998479998067764887753054778888887
Q ss_pred HHHHHHHHHH
Q ss_conf 3447776532
Q gi|254780285|r 436 DFDFCKVKEQ 445 (586)
Q Consensus 436 ~Fd~d~~l~~ 445 (586)
T Consensus 310 ~FD~~KL~wl 319 (461)
T PRK12558 310 KFDPAELEAL 319 (461)
T ss_pred CCCHHHHHHH
T ss_conf 5799999999