HHsearch alignment for GI: 254780285 and conserved domain: PRK12558

>PRK12558 glutamyl-tRNA synthetase; Provisional.
Probab=99.40  E-value=2e-12  Score=106.06  Aligned_cols=126  Identities=18%  Similarity=0.254  Sum_probs=71.6

Q ss_pred             CCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCHHH-HHHHHHHHHHHHCCCCC
Q ss_conf             0247815651011022222221024652135688899999975225554333--67776136-89999999997226634
Q gi|254780285|r  303 DMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIY--VMGSDHSG-YVKRLEAVAAAVSEKKA  379 (586)
Q Consensus       303 ~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iy--Vv~~~Q~~-h~~~v~~~~~~lg~~~~  379 (586)
T Consensus       167 D~v~G~i~~~~~~~~---D~Vi~rsDG~ptY~lA---~VV---D-D~~m~IthviRg~d~l~~t~~~~-~l~~alg~~~p  235 (461)
T PRK12558        167 DLVRGPQTVDLASLS---DPVLVREDGTYLYTLP---SVV---D-DIDMGVTHIIRGDDHVTNTGVQI-ALFRALGAEPP  235 (461)
T ss_pred             ECCCCEEEECCCCCC---CEEEEECCCCCEEEEE---EEE---C-CCCCCCCEEEECHHHHHHCHHHH-HHHHHHCCCCC
T ss_conf             014630673343458---8289934897103455---785---5-75578854463685886159999-99999579998


Q ss_pred             CCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH-----------HHHHHHHHHHCCHHHH
Q ss_conf             5115311011012211000001223302456777776-------------321-----------1234555420001233
Q gi|254780285|r  380 QINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS-----------DSVRFMMLWRKNSELL  435 (586)
Q Consensus       380 ~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~-----------~aiky~~L~~~~~~~~  435 (586)
T Consensus       236 ~~~h~pl--i-~~~~g~--klskR~g~-~sv~~yr~~GylPeAl~NyLalLGWs~~~~Ei~sl~eli~~Fdl~~i~kS~A  309 (461)
T PRK12558        236 VFGHHNL--L-TTASGE--GLSKRTGA-LSVGSLREAGYEPMAVASLAVLLGTSENVDAAPDMAALAEHFDLASVSRSSA  309 (461)
T ss_pred             EEEECCE--E-ECCCCC--CCCCCCCC-CCHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCEECCCCCCCCC
T ss_conf             0897134--5-689998--16666897-5899999879984789999998479998067764887753054778888887


Q ss_pred             HHHHHHHHHH
Q ss_conf             3447776532
Q gi|254780285|r  436 DFDFCKVKEQ  445 (586)
Q Consensus       436 ~Fd~d~~l~~  445 (586)
T Consensus       310 ~FD~~KL~wl  319 (461)
T PRK12558        310 KFDPAELEAL  319 (461)
T ss_pred             CCCHHHHHHH
T ss_conf             5799999999