HHsearch alignment for GI: 254780285 and conserved domain: cd00418

>cd00418 GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The descriminating form of GluRS differs from GlnRS and the non-descriminating form of GluRS in their C-terminal anti-codon binding domains.
Probab=98.72  E-value=3.8e-07  Score=69.11  Aligned_cols=193  Identities=25%  Similarity=0.293  Sum_probs=102.9

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHH
Q ss_conf             34432244117777785689999999985066641020147753145556789875322210245000660110241000
Q gi|254780285|r  128 VSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLK  207 (586)
Q Consensus       128 sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~  207 (586)
T Consensus         6 FAPsPtG~LHiG~ar~al~n~~~Ak~~--~G~~---------------------~LR------ieDTD~-~---------   46 (223)
T cd00418           6 FAPSPTGYLHIGHARAALLNYLYAKKY--GGKF---------------------ILR------FDDTDP-E---------   46 (223)
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHHHHH--CCEE---------------------EEE------ECCCCC-C---------
T ss_conf             088989854289999999999999985--9989---------------------997------236886-4---------


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-EECHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             012788888757641343023799999997899887545558870875210-0015887301045799999999974985
Q gi|254780285|r  208 HVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDI-FISEDDFHRGDPSPIRDIIDNLARQGYV  286 (586)
Q Consensus       208 ~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~-~~~Es~~~~~~~~~i~~~i~~l~~~g~~  286 (586)
T Consensus        47 ----------------------------r~~~e~~~~I~~dL~wLGl~~d~~~~~QS~r~----~~y~~~~~~Li~~G--   92 (223)
T cd00418          47 ----------------------------REVEEAEDSILEDLKWLGIKWDEGPYYQSDRF----DIYYEYAEKLIEEG--   92 (223)
T ss_pred             ----------------------------CCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH----HHHHHHHHHHHHCC--
T ss_conf             ----------------------------01888999999999991899998685387589----99999999997569--


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf             11342675556542000247815651011022222221024652135688899999975225554333677761368999
Q gi|254780285|r  287 YEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKR  366 (586)
Q Consensus       287 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~  366 (586)
T Consensus        93 ------------------------------------------~~PtY---~fa~vVDD~~~gITHV--iRG~D~~~~t~~  125 (223)
T cd00418          93 ------------------------------------------GYPTY---DFAVVVDDHLMGITHV--LRGEEHLDNTPK  125 (223)
T ss_pred             ------------------------------------------CCCCE---EEEEEECCCCCCCCEE--ECCHHHHHCCHH
T ss_conf             ------------------------------------------98140---1025853765788756--546277646799


Q ss_pred             HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCH---------------HHHHHHHHHHHH--HHHHHHHHH-
Q ss_conf             99999972266345115311011012211000001223302---------------456777776321--123455542-
Q gi|254780285|r  367 LEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDF---------------ITLRHVVDEVGS--DSVRFMMLW-  428 (586)
Q Consensus       367 v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~---------------v~l~dll~evg~--~aiky~~L~-  428 (586)
T Consensus       126 q~~l~~aLg~~~P~~~H~p--~l~-~~~g~--kLSKR~~~~~i~~~~~~gwdDprl~tl~~~r~~-G~~peai~n~~~~l  199 (223)
T cd00418         126 QIWLYEALGWEPPVFAHFG--RLN-NEDGT--KLSKRKLKKLVEEGIVEGWDDPRLPTLRGLRRR-GYLPEALRNFIALL  199 (223)
T ss_pred             HHHHHHHCCCCCCEEEEEC--CEE-CCCCC--CCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf             9999997099997289862--076-58887--140200021045577678878871039999986-99899999999995


Q ss_pred             HCCHHHHHHHHHHHHHHC
Q ss_conf             000123334477765320
Q gi|254780285|r  429 RKNSELLDFDFCKVKEQS  446 (586)
Q Consensus       429 ~~~~~~~~Fd~d~~l~~~  446 (586)
T Consensus       200 G~s~~~~~~~~~~l~~~n  217 (223)
T cd00418         200 GWSKSDATFDWEKLEALN  217 (223)
T ss_pred             CCCCCCCEECHHHHHHHH
T ss_conf             899878746699999998