HHsearch alignment for GI: 254780285 and conserved domain: cd00672
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.59 E-value=3.8e-07 Score=69.05 Aligned_cols=193 Identities=25% Similarity=0.324 Sum_probs=113.2
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
T Consensus 16 ~~~~~V~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDID-------------------------- 69 (213)
T cd00672 16 LNPGLVRMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDID-------------------------- 69 (213)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC--------------------------
T ss_conf 889978899789968899876534257689999999996399358999726751--------------------------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----EECHHHHHHCCHHH
Q ss_conf 0110241000012788888757641343023799999997899887545558870875210-----00158873010457
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDI-----FISEDDFHRGDPSP 272 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~-----~~~Es~~~~~~~~~ 272 (586)
T Consensus 70 -------------DKII~~A~~~~~-----~----~~el-a~~y~~~f~~d~~~Lni~~p~~~PraWHiECsa------M 120 (213)
T cd00672 70 -------------DKIIKRAREEGL-----S----IKEV-AEYYTAEFFEDMKALNVLPPDVYPRVWHIECSA------M 120 (213)
T ss_pred -------------HHHHHHHHHCCC-----C----HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHH------H
T ss_conf -------------899999998399-----9----9999-999999999999982899998135452014599------9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999974985113426755565420002478156510110222222210246521356888999999752255543
Q gi|254780285|r 273 IRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNM 352 (586)
Q Consensus 273 i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~ 352 (586)
T Consensus 121 ~~~~l---------------------------------------g~~~D---IH~GG~------DL-----~F------- 140 (213)
T cd00672 121 SMKYL---------------------------------------GETFD---IHGGGV------DL-----IF------- 140 (213)
T ss_pred HHHHH---------------------------------------CCCEE---EECCCC------CC-----CC-------
T ss_conf 89882---------------------------------------89625---634763------56-----58-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 33677761368999999999722663451153110110122110000012233024567777763211234555420001
Q gi|254780285|r 353 IYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNS 432 (586)
Q Consensus 353 iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~ 432 (586)
T Consensus 141 -----PHHeNE~AQs~a~~---~~~~a~-~W~H~g~l~~--~g~--KMSKSlgN~~~i~dll~~~~~~~~R~~lls~hYR 207 (213)
T cd00672 141 -----PHHENEIAQSEAAF---GKPFAR-YWLHTGHLTI--DGE--KMSKSLGNFITVRDALKKYDPEVLRLALLSSHYR 207 (213)
T ss_pred -----CCCCCHHHHHHHHH---CCCCCC-EEEEHHHHHH--CCC--EECCCCCCEEEHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf -----99704999988865---899601-0003457872--756--4034578752699998439999999999827378
Q ss_pred HHHHHH
Q ss_conf 233344
Q gi|254780285|r 433 ELLDFD 438 (586)
Q Consensus 433 ~~~~Fd 438 (586)
T Consensus 208 ~~l~fs 213 (213)
T cd00672 208 SPLDYS 213 (213)
T ss_pred CCCCCC
T ss_conf 987899