HHsearch alignment for GI: 254780285 and conserved domain: cd00674
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.73 E-value=1.4e-07 Score=72.20 Aligned_cols=267 Identities=19% Similarity=0.328 Sum_probs=137.6
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf 10002234432244117777785689999999985066641020147753145556789875322210245000660110
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYY 201 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~ 201 (586)
T Consensus 20 ~~v~-~tG~~PSG~~HIGn~rEv~~~~~V~ral~~~g~~~~~i~~~DD~D~----------------lRKVp~~lpe~-- 80 (354)
T cd00674 20 KYVV-ASGISPSGLIHIGNFREVVTADAVRRALRDLGFEVRLIYSWDDYDP----------------LRKVPDNVPES-- 80 (354)
T ss_pred CEEE-ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCH----------------HCCCCCCCCHH--
T ss_conf 5899-4787999886320550178899999999975996799998405551----------------00375578799--
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCH--HHHHHHHH
Q ss_conf 24100001278888875764134302-3799999997899887545558870875210001588730104--57999999
Q gi|254780285|r 202 PGVYLKHVGKELADKYSSELLNFPEE-KWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDP--SPIRDIID 278 (586)
Q Consensus 202 ~~~y~~~~~~e~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~--~~i~~~i~ 278 (586)
T Consensus 81 ---~~~ylg~PL~--------~IPdP~G~~~---Sy-aeHf~~~f~~~L~~~gi~~e~~s-~te~Y~sG~f~~~i~~~l~ 144 (354)
T cd00674 81 ---LEQYIGMPLS--------SVPDPFGCHE---SY-AEHFNAPFEESLDRFGIEVEFIS-ASEMYKSGLYDEQIKRALE 144 (354)
T ss_pred ---HHHHCCCCCE--------ECCCCCCCCC---CH-HHHHHHHHHHHHHHCCCEEEEEE-HHHCCCCCCCHHHHHHHHH
T ss_conf ---9986299630--------0689777754---59-99999999999998498289988-5660225762799999998
Q ss_pred H----------HHHCCC-----CCCCCCCCCCCCCCCC--CCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9----------997498-----5113426755565420--0024781565101102222222102465213568889999
Q gi|254780285|r 279 N----------LARQGY-----VYEGILPPPKSKTTQK--CDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYF 341 (586)
Q Consensus 279 ~----------l~~~g~-----~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~ 341 (586)
T Consensus 145 ~~~~I~~Il~~~~g~e~~~~y~P~~piC~~cGk~~t~v~~~d~~~~~V~Y~c~-cG~---------~~~~~~-~~g~gKL 213 (354)
T cd00674 145 KRDEIMEILNEYRGRELQETWYPYMPYCEKCGKDTTTVEEYDAEAETVRYRCE-CGH---------EGEVDI-RGGGGKL 213 (354)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEEECC-CCC---------EEEEEC-CCCCCEE
T ss_conf 28999999998547555786477764058888116768999489997999959-998---------888843-7886203
Q ss_pred HHHHHCCCCCCCC-----CCCCCHHH---HHHHHHHHHH-HHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9975225554333-----67776136---8999999999-7226634511531101101221100000122330245677
Q gi|254780285|r 342 KCKYERGFDNMIY-----VMGSDHSG---YVKRLEAVAA-AVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRH 412 (586)
Q Consensus 342 ~~k~e~~~d~~iy-----Vv~~~Q~~---h~~~v~~~~~-~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~d 412 (586)
T Consensus 214 ~WrvDW~mRW~~lgVd~Ep~GKDh~~~GgS~d~~~~I~~~i~g~~pP--~~~~YE~~~~-kgg~--KmSsSkGn~it~~e 288 (354)
T cd00674 214 QWRVDWAMRWAALGVDFEPFGKDHASSGGSYDTSKEIAREIFGGEPP--EGVMYEFIGL-KGGG--KMSSSKGNVITPRD 288 (354)
T ss_pred EEEECCEEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC--CCCCEEEEEE-CCCC--CCCCCCCCCCCHHH
T ss_conf 00103514553405158835742024675255789999997099999--8841699990-6998--72246786128999
Q ss_pred HHHHHHHHHHHHHHHHH-CCHHHHHHHH
Q ss_conf 77763211234555420-0012333447
Q gi|254780285|r 413 VVDEVGSDSVRFMMLWR-KNSELLDFDF 439 (586)
Q Consensus 413 ll~evg~~aiky~~L~~-~~~~~~~Fd~ 439 (586)
T Consensus 289 ~L~~~~pE~lr~l~~~~p~~~k~i~fD~ 316 (354)
T cd00674 289 WLEVAPPESLRFLYARRKNPAKHIGFDL 316 (354)
T ss_pred HHHHCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9976599999999860998553224675