Query gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 586
No_of_seqs 146 out of 2930
Neff 7.5
Searched_HMMs 39220
Date Tue May 24 14:30:12 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780285.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01611 argS arginyl-tRNA syn 100.0 0 0 1095.6 49.6 545 1-585 1-570 (570)
2 TIGR00456 argS arginyl-tRNA sy 100.0 0 0 1093.9 41.0 540 8-585 2-600 (600)
3 COG0018 ArgS Arginyl-tRNA synt 100.0 0 0 1078.1 44.7 540 1-585 1-577 (577)
4 PRK12451 arginyl-tRNA syntheta 100.0 0 0 1007.6 42.0 527 1-585 1-562 (562)
5 KOG4426 consensus 100.0 0 0 808.5 35.6 543 2-585 72-656 (656)
6 KOG1195 consensus 100.0 0 0 700.1 32.1 525 4-585 2-567 (567)
7 pfam00750 tRNA-synt_1d tRNA sy 100.0 0 0 591.9 20.8 314 102-439 2-345 (345)
8 cd00671 ArgRS_core This is the 100.0 0 0 482.4 19.4 258 122-403 1-267 (267)
9 cd07956 Anticodon_Ia_Arg Antic 100.0 3.4E-44 0 329.0 14.2 156 415-585 1-156 (156)
10 smart00836 DALR_1 DALR anticod 100.0 5.1E-31 1.3E-35 236.6 13.7 122 454-585 1-122 (122)
11 pfam05746 DALR_1 DALR anticodo 100.0 5.8E-30 1.5E-34 229.2 13.2 117 454-585 1-117 (117)
12 PRK11893 methionyl-tRNA synthe 99.9 1.7E-20 4.4E-25 162.7 29.6 390 121-582 1-480 (512)
13 cd00668 Ile_Leu_Val_MetRS_core 99.9 1E-21 2.5E-26 171.4 16.3 268 122-433 1-329 (334)
14 PRK12268 methionyl-tRNA synthe 99.9 9.9E-19 2.5E-23 150.3 27.5 392 121-584 3-516 (558)
15 PRK12267 methionyl-tRNA synthe 99.9 5.2E-18 1.3E-22 145.3 25.6 351 120-540 3-429 (644)
16 PRK00133 metG methionyl-tRNA s 99.8 1.7E-16 4.4E-21 134.7 24.1 344 121-539 2-453 (666)
17 PRK13208 valS valyl-tRNA synth 99.8 4.1E-15 1E-19 125.0 26.9 200 353-578 494-696 (809)
18 pfam09334 tRNA-synt_1g tRNA sy 99.7 2.3E-16 5.9E-21 133.7 14.6 264 124-444 2-370 (388)
19 pfam03485 Arg_tRNA_synt_N Argi 99.7 4.8E-17 1.2E-21 138.6 9.4 83 6-93 2-84 (84)
20 cd00814 MetRS_core This is the 99.7 1.1E-15 2.9E-20 128.9 14.6 256 122-433 1-314 (319)
21 TIGR00398 metG methionyl-tRNA 99.7 6.3E-14 1.6E-18 116.7 19.1 380 130-577 8-523 (573)
22 pfam01406 tRNA-synt_1e tRNA sy 99.7 6.3E-15 1.6E-19 123.7 14.0 266 119-444 6-298 (301)
23 COG0525 ValS Valyl-tRNA synthe 99.6 1.3E-11 3.3E-16 100.4 30.0 171 381-579 510-684 (877)
24 PRK05729 valS valyl-tRNA synth 99.6 1.8E-12 4.6E-17 106.4 24.4 173 382-578 508-682 (877)
25 COG0143 MetG Methionyl-tRNA sy 99.6 1.1E-11 2.8E-16 100.9 27.9 351 120-539 4-463 (558)
26 cd00817 ValRS_core This is the 99.6 4.9E-14 1.3E-18 117.4 14.1 266 122-431 2-356 (363)
27 PRK06039 ileS isoleucyl-tRNA s 99.6 2.7E-12 6.8E-17 105.2 22.9 140 379-538 577-724 (1042)
28 cd00812 LeuRS_core This is the 99.6 9.6E-14 2.4E-18 115.4 15.5 277 125-432 4-370 (376)
29 PRK05743 ileS isoleucyl-tRNA s 99.6 3.1E-11 7.9E-16 97.8 25.2 205 353-578 550-756 (910)
30 cd00818 IleRS_core This is the 99.6 2.6E-13 6.6E-18 112.4 14.0 53 124-176 4-56 (339)
31 PRK00260 cysS cysteinyl-tRNA s 99.5 9.1E-11 2.3E-15 94.5 26.5 247 118-444 19-311 (460)
32 PRK00574 gltX glutamyl-tRNA sy 99.5 2.9E-12 7.3E-17 105.0 13.3 280 129-445 10-324 (489)
33 pfam00133 tRNA-synt_1 tRNA syn 99.4 2E-11 5E-16 99.2 16.2 134 120-289 22-159 (606)
34 PRK12558 glutamyl-tRNA synthet 99.4 2E-12 5.2E-17 106.1 9.3 126 303-445 167-319 (461)
35 PRK01406 gltX glutamyl-tRNA sy 99.3 2.7E-11 6.8E-16 98.2 12.2 273 128-445 7-311 (467)
36 TIGR00464 gltX_bact glutamyl-t 99.3 4.4E-10 1.1E-14 89.7 17.0 374 129-577 7-440 (513)
37 PRK12410 glutamyl-tRNA synthet 99.3 2E-11 5E-16 99.2 9.8 129 300-445 148-303 (433)
38 pfam00749 tRNA-synt_1c tRNA sy 99.2 4.8E-11 1.2E-15 96.4 8.0 238 128-407 6-251 (314)
39 COG0215 CysS Cysteinyl-tRNA sy 99.2 1.6E-08 4E-13 78.8 18.6 262 119-460 19-327 (464)
40 PRK13804 ileS isoleucyl-tRNA s 99.1 8.6E-09 2.2E-13 80.6 15.7 170 352-538 591-762 (966)
41 COG0008 GlnS Glutamyl- and glu 99.1 1.6E-09 4.1E-14 85.7 10.9 114 319-444 181-320 (472)
42 PRK05710 glutamyl-Q tRNA(Asp) 99.1 1.8E-09 4.6E-14 85.4 10.1 77 321-407 169-245 (299)
43 TIGR03447 mycothiol_MshC cyste 99.1 5.5E-09 1.4E-13 82.0 12.4 305 120-534 34-387 (411)
44 PRK12418 cysteinyl-tRNA synthe 99.0 5.6E-09 1.4E-13 81.9 10.9 306 120-535 7-361 (384)
45 TIGR00392 ileS isoleucyl-tRNA 99.0 3.4E-08 8.8E-13 76.4 14.4 249 257-538 528-809 (938)
46 TIGR00435 cysS cysteinyl-tRNA 99.0 1.7E-07 4.5E-12 71.5 17.4 421 108-581 10-575 (660)
47 KOG0436 consensus 99.0 8.7E-07 2.2E-11 66.6 20.4 133 393-539 340-476 (578)
48 PRK00750 lysK lysyl-tRNA synth 98.9 2E-06 5E-11 64.1 21.4 268 122-439 30-326 (513)
49 COG0060 IleS Isoleucyl-tRNA sy 98.8 1.4E-07 3.5E-12 72.2 12.7 224 329-578 536-764 (933)
50 cd00802 class_I_aaRS_core Clas 98.8 1.2E-08 3E-13 79.7 7.1 48 124-176 1-48 (142)
51 pfam01921 tRNA-synt_1f tRNA sy 98.8 6.2E-08 1.6E-12 74.6 10.2 275 121-445 19-324 (355)
52 COG1384 LysS Lysyl-tRNA synthe 98.8 8.4E-08 2.1E-12 73.7 10.3 273 121-445 19-324 (521)
53 KOG2007 consensus 98.8 3.2E-05 8.1E-10 55.6 23.8 351 119-581 52-454 (586)
54 cd00808 GluRS_core Descriminat 98.7 5.9E-08 1.5E-12 74.8 8.3 83 323-416 96-178 (239)
55 PRK13804 ileS isoleucyl-tRNA s 98.7 1.2E-07 3.1E-12 72.5 9.8 134 121-290 54-190 (966)
56 cd00674 LysRS_core_class_I Thi 98.7 1.4E-07 3.5E-12 72.2 9.8 267 122-439 20-316 (354)
57 cd00418 GlxRS_core Glutamyl-tR 98.7 3.8E-07 9.6E-12 69.1 11.8 193 128-446 6-217 (223)
58 PRK04156 gltX glutamyl-tRNA sy 98.7 3E-07 7.6E-12 69.8 11.1 35 119-154 97-131 (566)
59 TIGR00422 valS valyl-tRNA synt 98.7 5.6E-07 1.4E-11 67.9 12.3 194 365-582 551-793 (970)
60 KOG1149 consensus 98.6 1.7E-05 4.4E-10 57.5 18.6 236 123-408 34-290 (524)
61 TIGR00396 leuS_bact leucyl-tRN 98.6 1.8E-07 4.7E-12 71.3 7.4 174 353-538 566-792 (916)
62 cd00672 CysRS_core This is the 98.6 3.8E-07 9.8E-12 69.1 8.7 193 118-438 16-213 (213)
63 PRK00390 leuS leucyl-tRNA synt 98.4 9.6E-06 2.4E-10 59.3 12.8 110 398-534 595-705 (822)
64 PRK12300 leuS leucyl-tRNA synt 98.4 3.4E-05 8.6E-10 55.4 15.6 156 353-537 527-687 (888)
65 COG0495 LeuS Leucyl-tRNA synth 98.4 1.5E-06 3.9E-11 64.8 7.6 158 353-536 529-695 (814)
66 PRK12300 leuS leucyl-tRNA synt 98.4 3.2E-06 8.2E-11 62.6 9.0 125 136-289 1-129 (888)
67 cd00807 Gln_GluRS_non_core Glu 98.3 2E-06 5E-11 64.1 7.1 165 128-405 6-170 (238)
68 TIGR00422 valS valyl-tRNA synt 97.9 0.0013 3.2E-08 44.4 14.9 146 121-300 35-189 (970)
69 KOG0432 consensus 97.9 9.7E-05 2.5E-09 52.2 8.5 172 379-578 576-792 (995)
70 PRK00390 leuS leucyl-tRNA synt 97.7 0.00052 1.3E-08 47.1 10.2 55 119-174 31-85 (822)
71 PRK01233 glyS glycyl-tRNA synt 97.6 0.0037 9.4E-08 41.1 13.1 108 451-574 573-680 (687)
72 PRK05347 glutaminyl-tRNA synth 97.5 0.0013 3.3E-08 44.3 9.0 32 122-154 29-60 (556)
73 COG0060 IleS Isoleucyl-tRNA sy 97.3 0.0014 3.6E-08 44.0 7.6 127 128-290 56-185 (933)
74 TIGR00463 gltX_arch glutamyl-t 97.3 8.7E-05 2.2E-09 52.5 1.3 98 121-288 100-197 (600)
75 COG0495 LeuS Leucyl-tRNA synth 97.1 0.013 3.3E-07 37.3 10.5 58 121-178 34-91 (814)
76 KOG0435 consensus 96.8 0.00031 8E-09 48.6 0.3 53 120-173 57-109 (876)
77 KOG0432 consensus 96.5 0.075 1.9E-06 31.9 14.3 136 119-288 73-210 (995)
78 TIGR00395 leuS_arch leucyl-tRN 96.2 0.0024 6E-08 42.5 1.6 141 378-538 722-865 (1109)
79 KOG0433 consensus 96.1 0.12 3E-06 30.6 9.9 194 354-564 570-771 (937)
80 TIGR00392 ileS isoleucyl-tRNA 96.0 0.015 3.7E-07 36.9 5.0 137 118-290 34-174 (938)
81 KOG0433 consensus 95.9 0.15 3.9E-06 29.8 13.1 36 132-170 66-101 (937)
82 TIGR00395 leuS_arch leucyl-tRN 95.5 0.0084 2.1E-07 38.6 2.1 165 122-290 42-233 (1109)
83 COG0751 GlyS Glycyl-tRNA synth 95.2 0.26 6.6E-06 28.2 12.7 102 454-572 580-682 (691)
84 KOG0434 consensus 94.7 0.18 4.7E-06 29.2 7.2 84 357-443 561-647 (1070)
85 COG0180 TrpS Tryptophanyl-tRNA 93.8 0.42 1.1E-05 26.7 7.5 107 328-443 128-252 (314)
86 KOG1147 consensus 92.3 0.87 2.2E-05 24.5 7.6 42 243-288 253-294 (712)
87 TIGR00467 lysS_arch lysyl-tRNA 92.0 0.93 2.4E-05 24.3 8.7 80 364-445 248-330 (539)
88 pfam00579 tRNA-synt_1b tRNA sy 89.9 0.39 9.9E-06 26.9 3.5 63 353-417 152-216 (291)
89 TIGR00313 cobQ cobyric acid sy 89.1 1.1 2.9E-05 23.6 5.4 28 235-262 102-129 (502)
90 cd02156 nt_trans nt_trans (nuc 88.9 0.4 1E-05 26.9 3.0 41 128-174 2-42 (147)
91 cd00806 TrpRS_core Tryptophany 88.4 0.38 9.6E-06 27.0 2.6 80 329-417 122-211 (282)
92 PRK12556 tryptophanyl-tRNA syn 88.1 0.46 1.2E-05 26.4 2.9 81 327-417 130-219 (328)
93 cd00805 TyrRS_core Tyrosinyl-t 88.1 0.66 1.7E-05 25.3 3.6 52 353-409 153-204 (268)
94 PRK12282 tryptophanyl-tRNA syn 88.0 0.48 1.2E-05 26.3 2.9 79 329-417 126-214 (333)
95 cd00395 Tyr_Trp_RS_core Tyrosi 87.1 0.81 2.1E-05 24.7 3.6 61 352-416 143-205 (274)
96 TIGR00440 glnS glutaminyl-tRNA 86.8 0.46 1.2E-05 26.4 2.2 19 129-147 6-24 (564)
97 pfam00579 tRNA-synt_1b tRNA sy 86.7 0.67 1.7E-05 25.3 3.0 44 126-175 8-51 (291)
98 KOG1148 consensus 84.8 0.94 2.4E-05 24.2 3.0 61 120-181 246-334 (764)
99 PRK00927 tryptophanyl-tRNA syn 83.4 0.8 2E-05 24.7 2.2 80 328-417 120-213 (325)
100 PRK12285 tryptophanyl-tRNA syn 82.1 0.77 2E-05 24.8 1.7 72 349-426 204-280 (369)
101 PRK08560 tyrosyl-tRNA syntheta 81.9 1.8 4.5E-05 22.3 3.5 78 329-417 153-239 (333)
102 TIGR00233 trpS tryptophanyl-tR 80.8 1.1 2.7E-05 23.9 2.0 90 327-417 140-244 (366)
103 cd07962 Anticodon_Ia_Val Antic 80.7 4 0.0001 19.8 9.0 82 490-578 39-121 (135)
104 PRK12284 tryptophanyl-tRNA syn 79.9 1.2 3E-05 23.5 2.0 76 327-412 130-215 (436)
105 PRK12283 tryptophanyl-tRNA syn 73.0 3.2 8.1E-05 20.5 2.7 19 127-145 6-24 (398)
106 cd07960 Anticodon_Ia_Ile_BEm A 72.1 6.7 0.00017 18.3 8.3 84 490-578 41-125 (180)
107 PRK05912 tyrosyl-tRNA syntheta 71.7 4.1 0.0001 19.8 2.9 69 85-176 11-80 (402)
108 PRK13354 tyrosyl-tRNA syntheta 66.4 6.3 0.00016 18.4 3.0 44 127-176 41-85 (405)
109 PRK07028 bifunctional hexulose 65.1 3.1 7.8E-05 20.6 1.2 17 151-168 124-140 (429)
110 TIGR02467 CbiE precorrin-6y C5 64.2 2.2 5.7E-05 21.6 0.4 66 453-531 104-171 (210)
111 KOG2023 consensus 61.9 5.1 0.00013 19.1 1.9 23 447-469 594-616 (885)
112 KOG4368 consensus 60.1 2 5.2E-05 21.9 -0.5 73 93-173 101-173 (757)
113 TIGR01278 DPOR_BchB light-inde 59.9 11 0.00029 16.7 4.8 134 8-178 70-210 (562)
114 pfam03464 eRF1_2 eRF1 domain 2 59.8 11 0.00029 16.6 3.9 61 28-89 24-84 (131)
115 COG0162 TyrS Tyrosyl-tRNA synt 59.0 9.2 0.00023 17.3 2.8 51 353-408 183-233 (401)
116 cd07957 Anticodon_Ia_Met Antic 58.3 12 0.00031 16.5 11.2 70 459-540 14-83 (129)
117 TIGR02834 spo_ytxC putative sp 57.1 12 0.00032 16.4 3.8 18 425-442 246-263 (283)
118 PRK08099 nicotinamide-nucleoti 53.4 9.2 0.00023 17.3 2.0 30 348-377 229-258 (411)
119 TIGR02685 pter_reduc_Leis pter 52.7 8.7 0.00022 17.4 1.8 22 146-167 13-34 (283)
120 KOG2713 consensus 51.3 9.2 0.00023 17.3 1.7 104 327-440 137-252 (347)
121 PTZ00126 tyrosyl-tRNA syntheta 49.3 16 0.00042 15.5 3.2 62 353-417 229-292 (399)
122 KOG0437 consensus 49.1 17 0.00042 15.5 7.6 28 399-426 710-737 (1080)
123 cd07961 Anticodon_Ia_Ile_ABEc 49.0 17 0.00042 15.5 9.6 83 491-579 45-127 (183)
124 PRK13849 putative crown gall t 46.9 18 0.00046 15.3 2.8 17 551-567 204-220 (231)
125 pfam09139 Mmp37 Mitochondrial 45.7 19 0.00047 15.1 4.5 14 148-161 76-89 (324)
126 TIGR01527 arch_NMN_Atrans nico 45.5 6.8 0.00017 18.2 0.3 14 135-154 10-23 (171)
127 pfam09456 RcsC RcsC Alpha-Beta 44.9 19 0.00049 15.1 2.6 26 140-165 5-30 (92)
128 pfam03068 PAD Protein-arginine 44.4 14 0.00036 16.0 1.8 10 366-375 337-346 (385)
129 TIGR03316 ygeW probable carbam 44.3 19 0.0005 15.0 4.2 14 84-97 41-54 (357)
130 COG2238 RPS19A Ribosomal prote 41.6 15 0.00037 15.9 1.5 26 263-288 88-113 (147)
131 KOG2145 consensus 40.8 22 0.00056 14.6 2.3 71 353-426 235-306 (397)
132 TIGR03581 EF_0839 conserved hy 40.8 11 0.00027 16.8 0.7 65 359-427 80-157 (236)
133 KOG2555 consensus 40.7 18 0.00047 15.2 1.9 12 504-515 539-550 (588)
134 pfam10137 TIR-like Predicted n 40.3 22 0.00057 14.6 2.6 37 138-174 4-40 (124)
135 TIGR01777 yfcH conserved hypot 39.9 21 0.00053 14.8 2.1 21 145-165 10-30 (307)
136 PRK09333 30S ribosomal protein 39.7 16 0.00041 15.6 1.5 17 270-286 95-111 (150)
137 pfam01090 Ribosomal_S19e Ribos 39.6 16 0.00041 15.6 1.5 17 270-286 94-110 (140)
138 COG4746 Uncharacterized protei 39.5 23 0.00058 14.5 3.8 72 1-73 2-79 (80)
139 pfam07071 DUF1341 Protein of u 39.1 12 0.00032 16.4 0.8 65 359-427 80-157 (218)
140 TIGR02853 spore_dpaA dipicolin 38.5 21 0.00052 14.8 1.9 17 146-162 163-179 (288)
141 TIGR01307 pgm_bpd_ind 2,3-bisp 38.1 17 0.00042 15.5 1.4 15 320-334 364-378 (529)
142 PRK05434 phosphoglyceromutase; 37.6 17 0.00044 15.4 1.3 18 569-586 486-503 (511)
143 PTZ00095 40S ribosomal protein 36.3 20 0.0005 15.0 1.5 16 271-286 120-135 (169)
144 cd02172 RfaE_N RfaE is a prote 34.9 16 0.0004 15.6 0.8 22 119-143 2-23 (143)
145 PRK01581 speE spermidine synth 33.4 22 0.00056 14.6 1.3 12 457-468 266-277 (363)
146 TIGR01016 sucCoAbeta succinyl- 32.7 29 0.00074 13.8 3.9 77 61-168 28-111 (389)
147 PHA01630 putative group 1 glyc 32.5 19 0.00049 15.1 0.9 23 262-285 152-174 (333)
148 cd03413 CbiK_C Anaerobic cobal 32.4 29 0.00074 13.8 1.8 25 140-164 71-98 (103)
149 KOG0356 consensus 32.0 29 0.00075 13.7 1.8 46 113-163 41-88 (550)
150 pfam04471 Mrr_cat Restriction 31.8 21 0.00053 14.8 1.0 25 150-174 1-26 (98)
151 pfam08373 RAP RAP domain. This 30.4 23 0.00058 14.5 1.0 21 147-167 18-40 (57)
152 KOG2869 consensus 29.7 33 0.00083 13.4 4.9 14 81-94 8-21 (379)
153 TIGR03291 methan_mark_17 putat 28.9 33 0.00085 13.3 6.3 105 50-169 43-159 (185)
154 PRK09739 hypothetical protein; 28.9 34 0.00085 13.3 3.7 40 119-165 2-41 (201)
155 TIGR02154 PhoB phosphate regul 28.7 34 0.00086 13.3 2.4 17 146-162 14-30 (226)
156 KOG3471 consensus 28.7 34 0.00086 13.3 3.2 94 83-177 97-201 (465)
157 cd02071 MM_CoA_mut_B12_BD meth 28.4 34 0.00087 13.3 2.1 27 133-162 5-31 (122)
158 PRK01438 murD UDP-N-acetylmura 27.9 34 0.00086 13.3 1.5 34 140-177 131-164 (481)
159 PRK05667 dnaG DNA primase; Val 27.1 36 0.00091 13.1 13.6 45 491-538 455-503 (600)
160 TIGR01061 parC_Gpos DNA topois 27.0 29 0.00073 13.8 1.1 39 324-362 548-598 (745)
161 cd02167 NMNAT_NadR The NMNAT d 26.9 21 0.00053 14.8 0.3 10 134-143 8-17 (157)
162 TIGR02988 YaaA_near_RecF S4 do 26.2 34 0.00087 13.3 1.3 23 405-427 6-32 (60)
163 TIGR03646 YtoQ_fam YtoQ family 25.9 33 0.00084 13.4 1.2 42 89-148 1-45 (144)
164 TIGR00337 PyrG CTP synthase; I 25.7 38 0.00097 13.0 2.3 69 247-339 205-274 (571)
165 TIGR01935 NOT-MenG RraA family 25.6 25 0.00064 14.2 0.6 63 80-165 30-94 (155)
166 KOG0785 consensus 25.5 38 0.00097 12.9 1.6 37 62-99 48-90 (365)
167 TIGR00482 TIGR00482 nicotinate 25.4 24 0.00062 14.3 0.5 38 327-365 79-123 (229)
168 pfam01467 CTP_transf_2 Cytidyl 25.3 29 0.00074 13.8 0.8 11 134-144 7-17 (148)
169 COG0163 UbiX 3-polyprenyl-4-hy 25.2 34 0.00087 13.3 1.2 15 567-581 166-180 (191)
170 COG0289 DapB Dihydrodipicolina 25.1 38 0.00097 13.0 1.4 16 120-135 69-84 (266)
171 COG4536 CorB Putative Mg2+ and 25.1 18 0.00047 15.2 -0.2 41 141-181 58-99 (423)
172 TIGR01194 cyc_pep_trnsptr cycl 25.0 17 0.00043 15.4 -0.4 36 335-370 468-511 (555)
173 cd03028 GRX_PICOT_like Glutare 24.9 39 0.001 12.9 2.0 18 451-469 20-37 (90)
174 cd07375 Anticodon_Ia_like Anti 24.9 39 0.001 12.9 10.3 47 490-537 36-82 (117)
175 PRK01153 nicotinamide-nucleoti 24.5 30 0.00077 13.7 0.8 13 150-162 105-117 (170)
176 COG1656 Uncharacterized conser 23.8 41 0.001 12.7 1.7 22 149-170 17-38 (165)
177 pfam09633 DUF2023 Protein of u 22.9 43 0.0011 12.6 4.9 48 60-107 22-69 (101)
178 cd00836 FERM_C The FERM_C doma 22.6 43 0.0011 12.6 2.2 20 517-536 72-91 (92)
179 TIGR01652 ATPase-Plipid phosph 22.1 44 0.0011 12.5 2.6 39 496-539 1026-1064(1249)
180 COG2945 Predicted hydrolase of 22.0 44 0.0011 12.5 1.9 37 131-168 34-70 (210)
181 pfam04028 DUF374 Domain of unk 22.0 44 0.0011 12.5 2.0 19 147-165 22-40 (74)
182 pfam08264 Anticodon_1 Anticodo 22.0 44 0.0011 12.5 8.2 20 507-526 68-89 (148)
183 pfam02948 Amelogenin Amelogeni 21.8 42 0.0011 12.6 1.1 31 85-118 9-43 (174)
184 cd00529 RuvC_resolvase Hollida 21.8 40 0.001 12.8 1.0 28 119-146 59-88 (154)
185 COG0649 NuoD NADH:ubiquinone o 21.6 42 0.0011 12.6 1.1 12 77-89 40-51 (398)
186 pfam03192 DUF257 Pyrococcus pr 21.5 43 0.0011 12.6 1.1 39 117-165 8-46 (210)
187 TIGR01616 nitro_assoc nitrogen 20.3 45 0.0012 12.4 1.0 16 152-167 19-34 (131)
188 cd02039 cytidylyltransferase_l 20.1 42 0.0011 12.6 0.8 10 134-143 8-17 (141)
No 1
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1095.57 Aligned_cols=545 Identities=40% Similarity=0.614 Sum_probs=477.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 98689999999999999986048882122452774178801274110489998888289979999999983457897314
Q gi|254780285|r 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDS 80 (586)
Q Consensus 1 M~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~ 80 (586)
|+|...+++.|.++|+.+.....++ .+.+.||+|++++|||||||+||.+||.+|++|++||++|++.++.++.+++
T Consensus 1 ~~~~~~i~~~i~~al~~~~~~~~~~---~~~i~ve~p~~~~~GD~s~n~a~~laK~lk~~P~~iA~~i~~~l~~~~~~~~ 77 (570)
T PRK01611 1 MNLKANLKALLSEALEALLLAGGLA---EPEIQVERPKDPEHGDYATNIAMQLAKKLKKNPREIAEEIVEALDASDLIEK 77 (570)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCC---CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 9858999999999999998727999---7776986797898765117999999988698999999999984466688768
Q ss_pred EEEECCCEEEEEECHHHHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88547976878888889999999998562213887656554100022344322441177777856899999999850666
Q gi|254780285|r 81 VFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYE 160 (586)
Q Consensus 81 vevagpGfIN~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~ 160 (586)
++++|||||||+|+++++.+.+.+++..+++||.+..++++||+||||||||||||||||+|||+|||+|+|||+++||+
T Consensus 78 vevagpGFIN~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~kv~VEf~S~Np~kplHvGH~R~aiiGdslaril~~~G~~ 157 (570)
T PRK01611 78 VEIAGPGFINFFLDPAALAALVLEILLAGERYGRSDIGKGKKVVVEYVSANPTGPLHVGHLRSAVIGDALARILEFAGYD 157 (570)
T ss_pred EEEECCCEEEEEECHHHHHHHHHHHHHHCHHCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99957975999999999999999999604202877568997799984489999986233588789999999999983990
Q ss_pred CCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 4102014775314555678987532221024500066011024100001--27888887576413430237999999978
Q gi|254780285|r 161 VTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHV--GKELADKYSSELLNFPEEKWLPIVKDYSV 238 (586)
Q Consensus 161 V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~~--~~e~~~~~~~~~~~~~e~~~~~~~~~~~~ 238 (586)
|+|+|||||||+|||++++++..+..+... +.+ ....|........ ......++..++.+. .+.....+|+..+
T Consensus 158 V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~~--~~~-l~~~Y~~~~~~~~~~~~~~~~~~~~~l~~~-~d~~~~~~~~~~~ 233 (570)
T PRK01611 158 VTREYYVNDAGTQIGMLAASLELEEAAAKG--LSD-LERRYREAKKEPDEDPEEYAGEYIVKLAAP-GDEELEELWRKAV 233 (570)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCCCC--CHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHH
T ss_conf 799999787427999999999996048887--066-799999985034658545578999998717-9888999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCC
Q ss_conf 99887545558870875210001588730104579999999997498511342675556542000247815651011022
Q gi|254780285|r 239 QAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGD 318 (586)
Q Consensus 239 ~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 318 (586)
+++++.++++|++|||+||.|.+||+++. .+.+.++++.|+++|++++ ++|++|++.+.+|+
T Consensus 234 ~~~l~~~~~~l~~l~I~fD~~~~Es~~~~--~~~i~~v~~~L~~~~~~~e----------------~dGa~~~~~~~~g~ 295 (570)
T PRK01611 234 DISLDEIKEDLDRLGVKFDVFFSESSLYN--DGKVEEVVEDLKEKGLLYE----------------SDGALWVRLTEFGD 295 (570)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHH--CCCHHHHHHHHHHCCCEEE----------------CCCCEEEECHHCCC
T ss_conf 99999999999974876442126688985--7744999999986795893----------------18968994211067
Q ss_pred C-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCC
Q ss_conf 2-222210246521356888999999752255543336777613689999999997226634511531101101221100
Q gi|254780285|r 319 D-VDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMP 397 (586)
Q Consensus 319 ~-~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~ 397 (586)
+ +|+||+|||||+||+|+|||||+||++++||++|||||++|++||+||+.+++.||+.+.+..++.++++.+.++|..
T Consensus 296 d~~~~vl~ksDGt~~Y~t~DiAy~~~K~~~~~d~~I~V~g~dq~~hf~~l~~~l~~lG~~~~~~~~l~h~~~~lv~~~~~ 375 (570)
T PRK01611 296 DEKDRVLQKSDGTYTYFTTDIAYHLYKFERGFDRVIYVVGADHHGHFKRLKAALKALGYDPEKLEVLLHQMVGLVRGGEG 375 (570)
T ss_pred CCCCEEEEECCCCCEECHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEEEECCCC
T ss_conf 77784899159960001468999999985178838999457588899999999998699963344799999875436867
Q ss_pred CCCCCCCCCHHHHHHHHHH----------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 0001223302456777776----------------------321123455542000123334477765320244367888
Q gi|254780285|r 398 IKMSKRAGDFITLRHVVDE----------------------VGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQ 455 (586)
Q Consensus 398 ~kmstR~G~~v~l~dll~e----------------------vg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~Yiq 455 (586)
+|||||+|++|+|+||++| ||+||+||+||+++++++|+|||++++++ +|||+||||
T Consensus 376 ~kMStR~G~~v~L~dlldea~~~a~~~~~~~~e~~~~ia~~Vg~~Airy~~L~~~~~~~~~Fd~d~~l~~-~g~t~~YiQ 454 (570)
T PRK01611 376 VKMSTRAGNVVTLDDLLDEAVERARELVEESEEEKEEIAKAVGIDAVRYFDLSRSRDSDYDFDLDLALSF-EGNNPPYVQ 454 (570)
T ss_pred CCCCCCCCCEEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHHHHHHHCCCCCCCCEECHHHHHHH-CCCCCHHHH
T ss_conf 6442467874589999999999999876337767889997634104026444068888822268998632-389825788
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88888999987533200246832234223552114998999999998421899999998528127999999999988999
Q gi|254780285|r 456 YAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGH 535 (586)
Q Consensus 456 Ya~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~f 535 (586)
||||||||||||++...... ......+.++.|++|++.|++||++|..|+++++||+||+|||+||++||+|
T Consensus 455 Ya~AR~~SIlrK~~~~~~~~--------~~~~~~l~~~~E~~Li~~l~~fp~vv~~a~~~~~Ph~l~~YL~~La~~Fn~f 526 (570)
T PRK01611 455 YAHARICSILRKAAEEGLAA--------AADLSLLTEEEELELIKKLAEFPEVVESAAEELEPHRIANYLYELAGAFHSF 526 (570)
T ss_pred HHHHHHHHHHHHHHCCCCCC--------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999998631234544--------3433346998999999999887999999999688189999999999999999
Q ss_pred HHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 87068666665435787899999999999999999998731587985445
Q gi|254780285|r 536 WSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 536 Y~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
|++| +|+.+++++++.+||+||.+|++||++||.||||+|||||
T Consensus 527 Y~~~------~vl~~~~~~~~~~RL~L~~a~~~vL~~gL~LLGI~~~erM 570 (570)
T PRK01611 527 YNAC------PVLKEEEEEERNARLALVKATAQVLKNGLDLLGIEAPERM 570 (570)
T ss_pred HHCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 8519------8358999899999999999999999998640398966779
No 2
>TIGR00456 argS arginyl-tRNA synthetase; InterPro: IPR001278 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Arginyl-tRNA synthetase (6.1.1.19 from EC) has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available . ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=100.00 E-value=0 Score=1093.90 Aligned_cols=540 Identities=34% Similarity=0.521 Sum_probs=471.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCC-CCEEEEEEECC
Q ss_conf 99999999999860488821224527741788012741104899988882899799999999834578-97314885479
Q gi|254780285|r 8 SSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKID-PDVDSVFIAGK 86 (586)
Q Consensus 8 ~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~-~~i~~vevagp 86 (586)
++.|++.|+++..+.+..........|+.||+++|||||||+||.|||.+|++|++||++|+++++.. .++++++++||
T Consensus 2 ~~~l~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~GDy~~~i~f~lak~~~~~P~~iA~e~~~~~~~~~~~~~~~~~~gp 81 (600)
T TIGR00456 2 KTLLKDEIKAALEKAGLSKESLILNLVEETPNPEFGDYASNIAFPLAKELKKAPRAIAEEIVDKLKTSEEIIEKVEAAGP 81 (600)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCEEEECC
T ss_conf 25789999999863276221345333213888764505889999987661788789999999846664220102055237
Q ss_pred -CEEEEEECHH-HHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEE
Q ss_conf -7687888888-99999999985622138876565541000223443224411777778568999999998506664102
Q gi|254780285|r 87 -GFINLYLSPS-YLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTRE 164 (586)
Q Consensus 87 -GfIN~~l~~~-~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~ 164 (586)
|||||++++. |+..++..++.++++||..++..++||+||||||||||||||||+|||||||+|+|||+|+||+|+|+
T Consensus 82 ~GfINF~~~~~~~~~~l~~~~~~~~e~yG~~~~~~~~ki~~EfsSaNp~gplH~GHlR~aiIGD~L~r~l~~~G~~V~r~ 161 (600)
T TIGR00456 82 CGFINFFLSPQKLLENLIQKILEQKEKYGSKKLKESKKIIIEFSSANPAGPLHIGHLRNAIIGDSLARILEFLGYDVIRE 161 (600)
T ss_pred CCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 51376654678999999887850120246766578707999876588897611000025777889999998759707985
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCC-CHHH-----HHHH------HHHHHHHHHHCCCC-H--HH
Q ss_conf 0147753145556789875322210245000660110241-0000-----1278------88887576413430-2--37
Q gi|254780285|r 165 YYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGV-YLKH-----VGKE------LADKYSSELLNFPE-E--KW 229 (586)
Q Consensus 165 nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~-y~~~-----~~~e------~~~~~~~~~~~~~e-~--~~ 229 (586)
|||||||+|||++++++...+.+.. .....+++.|.+. |+.- ...+ +.++..+.+.+.++ + +.
T Consensus 162 yyVND~G~Q~~~l~~~~~~~~~e~~--~~~~~~~~~~~~~~y~~~~k~~~e~~~~~~~~s~~~~~~~~~~~~e~gdnNe~ 239 (600)
T TIGR00456 162 YYVNDWGRQIGLLVLGVEKFGNEKE--TAVKKPDHGLEGFDYVEINKRLEENEEPINKQSLEEEARELFVKLESGDNNEK 239 (600)
T ss_pred EEECCHHHHHHHHHHHHHHHCCHHH--CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCHHH
T ss_conf 2005428999999999998512132--02668742012358889887886177765333545789999997432444289
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999999789988754555887087521000158873010457999999999-749851134267555654200024781
Q gi|254780285|r 230 LPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLA-RQGYVYEGILPPPKSKTTQKCDMDRKQ 308 (586)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~-~~g~~~e~~~~~~~~~~~~~~~~~~~~ 308 (586)
...+|+..++++++.+++||++|||+||.|.|||++++ .+.++.+++.|+ ++|+++| ++|+
T Consensus 240 ~~~~w~~~~~~~l~~~k~tl~~lni~~D~~~~E~E~~~--~~~~~~v~e~L~k~~gl~~e----------------d~gA 301 (600)
T TIGR00456 240 TIKLWKRLVEYALEGIKETLKRLNIHFDEFVWEGESVK--NGKVPKVLEDLKKEKGLVVE----------------DDGA 301 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEE--CCCHHHHHHHHHHHCCCEEE----------------CCCE
T ss_conf 99999999999999999999862965005885404577--48607899986310378067----------------4734
Q ss_pred EEEEHHHCCCC------CCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHHHHC--CCCC
Q ss_conf 56510110222------2222102465213568889999997522-5554333677761368999999999722--6634
Q gi|254780285|r 309 LLFRSTMVGDD------VDRPLLKSDGSYTYFAADLAYFKCKYER-GFDNMIYVMGSDHSGYVKRLEAVAAAVS--EKKA 379 (586)
Q Consensus 309 ~~~~~~~~g~~------~d~vl~rsDGt~~Y~t~DiA~~~~k~e~-~~d~~iyVv~~~Q~~h~~~v~~~~~~lg--~~~~ 379 (586)
+|++.+.++|+ +++||+|||||++|+|||||||.+|+++ +||++|||||+||++|++|++.+++.|| ..+.
T Consensus 302 ~~~~L~~f~d~kadG~~k~~Vl~k~DGt~~Y~T~DiAyh~~k~~~~~~d~~i~V~gsdh~~h~~q~~~~~e~LG~~~~~~ 381 (600)
T TIGR00456 302 LWLDLTEFGDKKADGDEKDRVLIKSDGTYLYLTRDIAYHLDKLERLGFDKLIYVWGSDHKLHIAQVFAILEKLGYLSKKK 381 (600)
T ss_pred EEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 89975776662126764564788508950105989999999873439728998740518889999999999716537886
Q ss_pred CCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH----------------------------HHHHHHHHHHHHHCC
Q ss_conf 5115311011012211000001223302456777776----------------------------321123455542000
Q gi|254780285|r 380 QINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE----------------------------VGSDSVRFMMLWRKN 431 (586)
Q Consensus 380 ~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e----------------------------vg~~aiky~~L~~~~ 431 (586)
.+.|+.++||.+. +|| |||||+|++|.+|+|+++ ||+|||||++|+.++
T Consensus 382 ~L~~~~f~~v~~~-~GK--kmkTR~G~~i~ld~ll~e~~~RA~~~~~~~~~~~~~~e~~e~~a~~vG~gAvry~~l~~~~ 458 (600)
T TIGR00456 382 ELEHLEFGMVPLG-SGK--KMKTRRGNVISLDNLLDEASKRAGNVITKRNTDLEQDEAEEKVADAVGIGAVRYADLSKNR 458 (600)
T ss_pred CEEEEEEEEEECC-CCC--CCCCCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 1689987643257-888--5434556602234468999999999996110135222037899999736799999997278
Q ss_pred HHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHH
Q ss_conf 123334477-76532024436788888888999987-5332002468322342235521149-98999999998421899
Q gi|254780285|r 432 SELLDFDFC-KVKEQSKENPVFYVQYAYARCRSIFR-QAKDIFPDLDFDLFPRNVIPQESEF-DTSELQLIVHLAEYPRV 508 (586)
Q Consensus 432 ~~~~~Fd~d-~~l~~~~~nt~~YiqYa~aR~~SIlr-Ka~~~~~~~~~~~~~~~~~~~~~~~-~~~E~~L~~~l~~f~~v 508 (586)
+++|+|||| ++++ +++||+||||||||||||||| ++....... ......+. ++.|+.|++.|++||++
T Consensus 459 ~~~~~Fd~d~~~L~-f~~n~~pY~QYAhaR~~Silr~~~~~~~~~~--------~~~~~~~~~~~~E~~L~~~L~~fp~~ 529 (600)
T TIGR00456 459 ETHYVFDWDTAMLS-FEGNTAPYIQYAHARICSILRKKAEIDGEKL--------IADDFLLLKEEKEKELLKLLLQFPEV 529 (600)
T ss_pred CCCCEEECCCHHHC-CCCCCCCHHHHHHHHHHHHHHHHCCCCHHHH--------HHHHCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 98815501201111-5788743258889999998763102331345--------53200036888899999998564899
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999852812799999999998899987068666665435787899999999999999999998731587985445
Q gi|254780285|r 509 IENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 509 i~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
|+.|+++++||+||+|||+||+.||+||++| +|++.++++++.+||+||.+|++||++||.||||++||||
T Consensus 530 ~~~~~~~~~p~~l~~Yly~LA~~F~sfY~~~------~v~~~~~~~~~~~RL~L~~~~~~~L~n~L~LLGI~~~~rM 600 (600)
T TIGR00456 530 IEEAAEEREPHVLTNYLYELAKLFSSFYKAC------PVLDAENEELAKARLALLKATRQTLKNGLELLGIEAPERM 600 (600)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999985471888999999977642366417------7889862668999999999999999998876088987779
No 3
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=0 Score=1078.13 Aligned_cols=540 Identities=37% Similarity=0.582 Sum_probs=466.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 98689999999999999986048882122452774178801274110489998888289979999999983457897314
Q gi|254780285|r 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDS 80 (586)
Q Consensus 1 M~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~ 80 (586)
|||+..+++.|..+|.++. .......+.|++|++++|||||||+||.+||.+++||++||++|++.|..++.+++
T Consensus 1 m~i~~~l~~~i~~~l~~~~-----~~~~~~~~~ve~~~~~~~GD~a~n~a~~laK~~~~~P~eiA~~i~~~l~~~~~~~~ 75 (577)
T COG0018 1 MNIKQLLKEKIAEALSAAG-----LDVEEIEILVEPPKDPEHGDFATNIAFQLAKKLGKNPREIAEEIAEKLDTDEIIEK 75 (577)
T ss_pred CCHHHHHHHHHHHHHHHHH-----CCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 9778999999999999730-----44455653001599987666333588997543499989999999986045576768
Q ss_pred EEEECCCEEEEEECHHHHHHHHHHHHHC-CHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8854797687888888999999999856-221388765655410002234432244117777785689999999985066
Q gi|254780285|r 81 VFIAGKGFINLYLSPSYLRKILSSIVVS-GIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGY 159 (586)
Q Consensus 81 vevagpGfIN~~l~~~~~~~~l~~i~~~-~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~ 159 (586)
|+++|||||||++++.++.+.+.+++.+ +..||.+..++|++|+||||||||||||||||+|||||||+|+|||+|+||
T Consensus 76 veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy 155 (577)
T COG0018 76 VEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGY 155 (577)
T ss_pred EEECCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99727977889978899999999999733355674436899879998747999998523323536889999999998399
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHH-------HHHHCC--CCHHHH
Q ss_conf 64102014775314555678987532221024500066011024100001278888875-------764134--302379
Q gi|254780285|r 160 EVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYS-------SELLNF--PEEKWL 230 (586)
Q Consensus 160 ~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~~~~e~~~~~~-------~~~~~~--~e~~~~ 230 (586)
+|+|+|||||||+|||++++++..++.+... ...+.+.|.|.++...++++.+... ..+.+. .++..
T Consensus 156 ~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~---~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~- 231 (577)
T COG0018 156 DVTRENYVNDWGTQIGMLALSYEKRGREALG---LTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA- 231 (577)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH-
T ss_conf 7667866785799999999999995541013---777720688999999999997484612678899999886477578-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99999978998875455588708752100015887301045799999999974985113426755565420002478156
Q gi|254780285|r 231 PIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLL 310 (586)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~ 310 (586)
.+|+..++.+++.++++|++|||+||.|+|||+.+. .+.+.++++.|+++|++|| ++|+++
T Consensus 232 -~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~--~~~~~~vv~~L~~~~~~~e----------------~~GA~~ 292 (577)
T COG0018 232 -ELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFY--NGKVEKVVEDLEEKGLLYE----------------DDGALV 292 (577)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH--CCCHHHHHHHHHHCCCEEE----------------ECCEEE
T ss_conf -999999999999999999992953001323426552--6649999999986697760----------------099589
Q ss_pred EEHH---HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--CEEEE
Q ss_conf 5101---102222222102465213568889999997522555433367776136899999999972266345--11531
Q gi|254780285|r 311 FRST---MVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQ--INVLL 385 (586)
Q Consensus 311 ~~~~---~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~--~~~~~ 385 (586)
+.-. ..|+++|+||+|||||+||+|+|||||+||++++||++|||||+||++||+|++.+++.+|+.+++ +.|+.
T Consensus 293 vdl~~~~~~gd~~~~vl~KSDGt~lY~t~DIAy~~~K~~~~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~ 372 (577)
T COG0018 293 VDLLKFKKFGDDKDRVLQKSDGTYLYFTRDIAYHLYKFERGFDKLIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQG 372 (577)
T ss_pred EEHHHHHHCCCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 86432111168777289976997054253899999997369988999967862449999999999846998656189997
Q ss_pred CCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH----------------------HHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 101101221100000122330245677777632----------------------1123455542000123334477765
Q gi|254780285|r 386 CELVRLYRDGMPIKMSKRAGDFITLRHVVDEVG----------------------SDSVRFMMLWRKNSELLDFDFCKVK 443 (586)
Q Consensus 386 ~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg----------------------~~aiky~~L~~~~~~~~~Fd~d~~l 443 (586)
+++| ++|.++|||||+|++|+++|++++++ +|||||+||+++|+++|+|||++|+
T Consensus 373 ~~l~---~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~l 449 (577)
T COG0018 373 VGLV---RGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKAL 449 (577)
T ss_pred EEEE---ECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH
T ss_conf 7525---7787763422488657899999999887666765432115777777524067899886289999475399997
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 32024436788888888999987533200246832234223552114998999999998421899999998528127999
Q gi|254780285|r 444 EQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAF 523 (586)
Q Consensus 444 ~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~ 523 (586)
++ +|||+||||||||||||||||+++...+... ... ..+.++.|++|++.|++||++|++|+++++||+||.
T Consensus 450 sf-egNt~pYvQYA~ARi~SIlrka~e~~~~~~~------~~~-~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~ 521 (577)
T COG0018 450 SF-EGNTAPYVQYAHARICSILRKAGEDELDLST------EAD-ALLTELEERELVKKLLEFPEVLEEAAEELEPHRLAN 521 (577)
T ss_pred HC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC------CCC-HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 44-5997215999999999999854443455332------221-010682799999999984999999998569559999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999998899987068666665435787899999999999999999998731587985445
Q gi|254780285|r 524 YLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 524 Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
|||+||+.||+||++| +|+.+++++++.+||+||.+|++||++||+||||++||||
T Consensus 522 YL~~LA~~Fn~fY~~~------~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~~e~M 577 (577)
T COG0018 522 YLYDLAGSFNSFYNAC------PVLGAENEELRAARLALVKATRQVLKNGLDLLGIEAPERM 577 (577)
T ss_pred HHHHHHHHHHHHHHHC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999998508------7778995789999999999999999977876099975569
No 4
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=0 Score=1007.57 Aligned_cols=527 Identities=25% Similarity=0.363 Sum_probs=439.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 98689999999999999986048882122452774178801274110489998888289979999999983457897314
Q gi|254780285|r 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDS 80 (586)
Q Consensus 1 M~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~ 80 (586)
|++...|.+.+..++....++ ..+. ..||+|++++|||||+| ||.|||.+|++|++||++|++.|+ ++.|++
T Consensus 1 m~~k~~~~~~~~~~~~~~~~~-----~~~~-~~ie~P~~~~~GD~s~~-a~~LAK~lk~~P~~IA~~I~~~l~-~~~i~~ 72 (562)
T PRK12451 1 MDYKTQFAESLSNIFTNELTQ-----KQIL-DLIETPKQDEFGDAAFP-CFSLAKQYKKAPAIIAKEVAEKLS-DPFFTK 72 (562)
T ss_pred CCHHHHHHHHHHHHHHHHCCH-----HHHH-HHCCCCCCCCCHHHHHH-HHHHHHHHCCCHHHHHHHHHHHCC-CCCCCE
T ss_conf 976899999999998602799-----8988-86228989985307889-999998869799999999998467-675066
Q ss_pred EEEECCCEEEEEECHHHHHH-HHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88547976878888889999-99999856221388765655410002234432244117777785689999999985066
Q gi|254780285|r 81 VFIAGKGFINLYLSPSYLRK-ILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGY 159 (586)
Q Consensus 81 vevagpGfIN~~l~~~~~~~-~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~ 159 (586)
||+||| ||||+|+++++.+ ++.+++..++.||++..+++++|+||||||||||||||||+|||+|||+|||||+|+||
T Consensus 73 veiagP-fiN~~l~~~~~~~~~l~~i~~~~~~yG~~~~~~~k~v~vEfvSaNPtgpLHVGH~R~aiiGdsLariL~~~G~ 151 (562)
T PRK12451 73 VEAVGP-YVNVFFNRETVSDAVLKTILAEKEEYGQNHFGCEKTVVIDYSSPNIAKPFSMGHLRSTMIGNSLKHIAEKCGY 151 (562)
T ss_pred EEEECC-EEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 998378-7899998899999999999853663287757899879998528999988624224627999999999998698
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHH-----HHHHHHHHHHHHHHHC--CCCHHHHHH
Q ss_conf 641020147753145556789875322210245000660110241000-----0127888887576413--430237999
Q gi|254780285|r 160 EVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLK-----HVGKELADKYSSELLN--FPEEKWLPI 232 (586)
Q Consensus 160 ~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~-----~~~~e~~~~~~~~~~~--~~e~~~~~~ 232 (586)
+|+|+|||||||+||+++++++..+..+.....+ +.....+.|.. ....++.+.....+.. ..++. ...
T Consensus 152 ~V~reyYinD~G~Qi~~l~~~~~~~~~~~~~~~~---~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~-~~~ 227 (562)
T PRK12451 152 EVVGINYIGDWGTQFGKLITAYKKWGNEAVVKED---PIRELFKLYVQFHEEVKDDEELEEEGRAWFKKLEEGDEE-AVE 227 (562)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCC---CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHH-HHH
T ss_conf 5999997477308999999999985440112467---578999999999986504800689999999987668999-999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99997899887545558870875210001588730104579999999997498511342675556542000247815651
Q gi|254780285|r 233 VKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFR 312 (586)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 312 (586)
+|++.++++++.++++|++|||+||.|.+||.+. +.+.++++.|+++|++|+ ++|++|++
T Consensus 228 ~~~~~~~~~l~~~~~~l~~l~v~fD~~~~Es~~~----~~~~~~i~~L~~~g~~~e----------------~dGA~~~~ 287 (562)
T PRK12451 228 LWNWFRHESLKEFSRIYELLGVEFTNFQGEAFYN----NLMEDFIGILEEHDLLEE----------------SEGALVVN 287 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCEEEEEECHHHHH----HHHHHHHHHHHHCCCEEE----------------CCCCEECC
T ss_conf 9999999999999999999297201452324451----247899999997797894----------------79974358
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEECCHHH
Q ss_conf 01102222222102465213568889999997522-5554333677761368999999999722663-451153110110
Q gi|254780285|r 313 STMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYER-GFDNMIYVMGSDHSGYVKRLEAVAAAVSEKK-AQINVLLCELVR 390 (586)
Q Consensus 313 ~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~-~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~-~~~~~~~~~~v~ 390 (586)
.++.| ++|++|+|||||+||+|+|||||.||+++ +||++|||||+||++||+||+.+++.||+.. ..+.|+.|++|.
T Consensus 288 ~~~~g-~~~~vl~ksDGt~tY~t~DiA~~~~k~~~~~~d~~I~V~gadh~~~~~rv~a~l~~lg~~~~~~~~hv~~~~v~ 366 (562)
T PRK12451 288 LEEEG-MPPCLIRKSDGATIYATRDLTAALYRQNTFGFDKALYVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGFIL 366 (562)
T ss_pred CCHHC-CCCEEEECCCCCCEEECCHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEE
T ss_conf 71312-78638991899721316647899999873099758999567476799999999997499754550689889987
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHH-------------------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 12211000001223302456777776-------------------------32112345554200012333447776532
Q gi|254780285|r 391 LYRDGMPIKMSKRAGDFITLRHVVDE-------------------------VGSDSVRFMMLWRKNSELLDFDFCKVKEQ 445 (586)
Q Consensus 391 l~~dg~~~kmstR~G~~v~l~dll~e-------------------------vg~~aiky~~L~~~~~~~~~Fd~d~~l~~ 445 (586)
++|+ |||||+|++|+|+||++| ||+||+||++|+++++++++|||++++++
T Consensus 367 --~~g~--kMStR~G~~v~l~dll~e~~~~a~~~~~~r~~~~~~~~~ia~~VG~~Airy~~L~~~~~~~~~FD~d~~~~~ 442 (562)
T PRK12451 367 --KDGK--KMSTRKGRVILLEEVLEEAIELAKQNIEEKNPNLKQKEEVAKQVGVGAVIFHDLKNERMHNIEFSLENMLKF 442 (562)
T ss_pred --CCCC--CEEECCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHC
T ss_conf --4886--302057875689999999999999998752777132899999853113013444316787776789999742
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 02443678888888899998753320024683223422355211499899999999842189999999852812799999
Q gi|254780285|r 446 SKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYL 525 (586)
Q Consensus 446 ~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl 525 (586)
++|++||||||||||||||||++.... . . ...+.++.|++|++.|++||++|..|+++++||+||.||
T Consensus 443 -~~~~~PYiQYAhARi~SIlrk~~~~~~---~--~------~~~l~~~~e~~Li~~L~~fp~vv~~aa~~~~Ph~l~~Yl 510 (562)
T PRK12451 443 -EGETGPYVQYTHARACSILRKESVEFE---T--C------TFALKDDHSWSVVKLLNKFPQVIEAAFNKNEPSVISKYV 510 (562)
T ss_pred -CCCCCHHHHHHHHHHHHHHHHCCCCCC---C--C------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
T ss_conf -578873699999999999974457755---4--3------344699799999999998899999999849937999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999998899987068666665435787899999999999999999998731587985445
Q gi|254780285|r 526 YDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 526 ~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
++||+.||+||++|+ |+.. + +.+.+||+||.+|++||++||.||||+|||||
T Consensus 511 ~~LA~~Fh~fY~~~~------Vl~~-~-~~~~aRL~L~~a~~~vl~ngL~LLGI~ape~M 562 (562)
T PRK12451 511 LDVAQSFNKYYGNVR------ILEE-S-AEKDSRLALVYAVTVVLKEGLRLLGVEAPEEM 562 (562)
T ss_pred HHHHHHHHHHHCCCC------CCCC-C-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999980687------7899-5-65899999999999999997432298855579
No 5
>KOG4426 consensus
Probab=100.00 E-value=0 Score=808.52 Aligned_cols=543 Identities=24% Similarity=0.350 Sum_probs=440.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHC-----CCHHHHHHHHHHHCCCCC
Q ss_conf 868999999999999998604888212245277417880127411048999888828-----997999999998345789
Q gi|254780285|r 2 YLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLG-----LDPLTIAELIVARIKIDP 76 (586)
Q Consensus 2 ~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~k-----k~P~~iA~~i~~~l~~~~ 76 (586)
|++..+.+-...+|+.+.++..- . ...|.++++++|||||||.||.+++.+| ++|++||++|.+.++.++
T Consensus 72 ni~~~L~~lF~~aik~a~Pd~~~----v-p~liaps~~~kFGDYQCNnAMgl~~~lK~kg~~~~P~~va~~l~~~lP~se 146 (656)
T KOG4426 72 NIFRRLQSLFDVAIKLAFPDLPD----V-PLLIAPSPNAKFGDYQCNNAMGLSSKLKGKGINKRPRDVAQELQKHLPTSE 146 (656)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCC----C-CCEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCHH
T ss_conf 69999999999999984899999----9-753346766666650034323089997305776696789999985589366
Q ss_pred CEEEEEEECCCEEEEEECHHHHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 73148854797687888888999999999856221388765655410002234432244117777785689999999985
Q gi|254780285|r 77 DVDSVFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAF 156 (586)
Q Consensus 77 ~i~~vevagpGfIN~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~ 156 (586)
.|+++++|||||||++|+..|++..+..++.+|.... ....|+|+|||||||++|+|||||||||||||||+|+++|
T Consensus 147 ~vEk~~iagpGFiNv~Ls~d~~~~~i~nll~~GV~~P---~l~~KrvlVDFSSPNIAKeMHVGHLRSTIIGdsl~RllE~ 223 (656)
T KOG4426 147 MVEKCEIAGPGFINVFLSKDYMSKQISNLLVNGVKLP---TLSVKRVLVDFSSPNIAKEMHVGHLRSTIIGDSLCRLLEF 223 (656)
T ss_pred HHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCC---CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 6666402588437998415889999999987388775---2110368983589737777631045656676889999986
Q ss_pred CCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC--HHHCCCCCH-HHHHHHHHHHHHHHHHCCCC-HHHHHH
Q ss_conf 06664102014775314555678987532221024500066--011024100-00127888887576413430-237999
Q gi|254780285|r 157 SGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP--EGYYPGVYL-KHVGKELADKYSSELLNFPE-EKWLPI 232 (586)
Q Consensus 157 ~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~--e~~~~~~y~-~~~~~e~~~~~~~~~~~~~e-~~~~~~ 232 (586)
.|++|.|.||||||||||||||.+++.++++.....+ ++. .-+|+.+-. .+...++.++..+......- +.....
T Consensus 224 ~~~dVlR~NHvGDWGTQFGMLIahL~dkFPd~l~vsp-~IgDLQvFYkeSKkrFD~deeFKkrAyq~VV~LQggdp~~~k 302 (656)
T KOG4426 224 SGVDVLRRNHVGDWGTQFGMLIAHLFDKFPDYLSVSP-PIGDLQVFYKESKKRFDEDEEFKKRAYQAVVRLQGGDPDIRK 302 (656)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCHHCCCC-CCHHHHHHHHHHHHCCCCCHHHHHHHHHHEEECCCCCCHHHH
T ss_conf 0761675224550577888999999986876000489-841689999988752685788999998770242069970999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 99997899887545558870875210001588730104579999999997498511342675556542000247815651
Q gi|254780285|r 233 VKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFR 312 (586)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 312 (586)
.|...-+.+.+.+...|.+|.|.... .+||+|. +.+.++++.+..+|++.++ ++..++|.
T Consensus 303 AW~~ICdvSr~ef~kvY~rLdi~l~e-~GESFYq----~~m~~vveel~~kglvee~---------------~Gr~i~f~ 362 (656)
T KOG4426 303 AWALICDVSRKEFQKVYNRLDISLKE-RGESFYQ----DRMAEVVEELKSKGLVEED---------------DGRRIMFP 362 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHH-CCHHHHH----HHHHHHHHHHHCCCCEEEC---------------CCCEEECC
T ss_conf 99999776589999999874003764-3454420----6899999997138955515---------------89458654
Q ss_pred HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC---CCCEEEECCH
Q ss_conf 0110222222210246521356888999999752-25554333677761368999999999722663---4511531101
Q gi|254780285|r 313 STMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYE-RGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKK---AQINVLLCEL 388 (586)
Q Consensus 313 ~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e-~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~---~~~~~~~~~~ 388 (586)
.|-+.|..++||||++||.|+|+|+..+|.. .++||+|||+|+.|++||..+|++++..||-. .++.|+.+|+
T Consensus 363 ---~g~~IPLtvVKSDGGftYdtsDlaAl~yRl~EEkadwiIYVvD~GQs~Hf~t~fkAar~~gwld~~~~RV~HvgFGl 439 (656)
T KOG4426 363 ---EGCDIPLTVVKSDGGFTYDTSDLAALKYRLNEEKADWIIYVVDSGQSQHFNTIFKAARKAGWLDPTYPRVEHVGFGL 439 (656)
T ss_pred ---CCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEE
T ss_conf ---79986159996489855251069999999877634759999607526789999999987075477764200013336
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHH-----------------------------HHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 1012211000001223302456777776-----------------------------32112345554200012333447
Q gi|254780285|r 389 VRLYRDGMPIKMSKRAGDFITLRHVVDE-----------------------------VGSDSVRFMMLWRKNSELLDFDF 439 (586)
Q Consensus 389 v~l~~dg~~~kmstR~G~~v~l~dll~e-----------------------------vg~~aiky~~L~~~~~~~~~Fd~ 439 (586)
| |++||| |+.||+|.+|.|-||++| ||.|++||++|+.+|.++|+|++
T Consensus 440 V-LGeD~K--kFkTRsgetVrL~DLLdEg~kRs~~~Liergrdk~~tpeeL~~a~eavayGciKYaDL~hnR~~dY~FSF 516 (656)
T KOG4426 440 V-LGEDKK--KFKTRSGETVRLLDLLDEGKKRSKEKLIERGRDKVLTPEELDAAQEAVAYGCIKYADLSHNRITDYIFSF 516 (656)
T ss_pred E-ECCCCC--CCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHHHHHHCCCCCCCEEEEH
T ss_conf 8-746762--0004566514289888788888999999716665489999999999887430237650455203416568
Q ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCH
Q ss_conf 77653202443678888888899998753320024683223422355211499899999999842189999999852812
Q gi|254780285|r 440 CKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPY 519 (586)
Q Consensus 440 d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~ 519 (586)
|+|+. ..|||+.|++|||+|||||.||++....++-. .+.. .+...+-++.||.|.++|++|+++|+.+..++-||
T Consensus 517 DkML~-DrGnTAvYLLYa~tRIcSI~rksg~d~~~l~~-~lkk--T~ki~LDH~~E~kLg~~lLkf~e~v~~~~~~L~lh 592 (656)
T KOG4426 517 DKMLE-DRGNTAVYLLYAYTRICSIARKSGKDNVDLIK-ELKK--TGKIALDHEKEWKLGKHLLKFAEIVEKALDSLFLH 592 (656)
T ss_pred HHHHH-CCCCCEEHHHHHHHHHHHHHHHCCCCHHHHHH-HHHH--CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88865-46861003589999999999871774256899-9985--68623677778899999985899999999988799
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 799999999998899987068666665435787899999999999999999998731587985445
Q gi|254780285|r 520 KLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 520 ~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
.+|.|+|+||..|+.||.+|.++..-+ ..+-..+..+||+||+||+.||+.|+++|||.|+.||
T Consensus 593 ~lC~y~y~l~t~Ft~FY~~Cyv~e~~~--eg~i~~vn~sRllLCeata~VmrkcF~iLGi~pV~km 656 (656)
T KOG4426 593 VLCDYLYELATLFTEFYDSCYVIEKNK--EGEIPFVNMSRLLLCEATAAVMRKCFHILGIKPVYKM 656 (656)
T ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999999999999851207714654--4565431067899989999999975676277204559
No 6
>KOG1195 consensus
Probab=100.00 E-value=0 Score=700.05 Aligned_cols=525 Identities=24% Similarity=0.350 Sum_probs=425.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEE
Q ss_conf 89999999999999986048882122452774178801274110489998888289979999999983457897314885
Q gi|254780285|r 4 FADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDSVFI 83 (586)
Q Consensus 4 ~~~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~vev 83 (586)
+..++..|.+.|..+.. +....+. ..+|.+.+++-||.-.+ +-+ ++..|.+.|...++.+..+..++++..
T Consensus 2 ~~~lr~~i~e~l~~~~~---~~~~~i~-~~le~~~~~~r~~~~~~----lp~-i~~~~~~~a~~~~e~~~~~~~v~~~~~ 72 (567)
T KOG1195 2 VDVLRQYISEELSKISG---VDSSLIP-PALEQSNSMDRPDLLLP----LPR-IRVQGKEDALRWAEALPCNRIVEEVGA 72 (567)
T ss_pred CCHHHHHHHHHHHHHHC---CCHHHHH-HHHHHHCCCCCCCCCCC----CCC-CCCCCHHHHHHHHHHCCCCCCHHHHHC
T ss_conf 40789999998666417---8877767-88875226778876451----763-344777789999996555440577716
Q ss_pred ECCCEEEEEECHHHHHH-HHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 47976878888889999-99999856221388765655410002234432244117777785689999999985066641
Q gi|254780285|r 84 AGKGFINLYLSPSYLRK-ILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVT 162 (586)
Q Consensus 84 agpGfIN~~l~~~~~~~-~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~ 162 (586)
.|| |++|+|++..+.+ ++..+..+.+.||.++.+++|+|||||||||+||||||||+||||||..++|+.+.+||+|+
T Consensus 73 ~~~-~~~f~ln~~~~~k~~l~~i~~~~~~~g~~~~~~~k~iVVefSSPNIAK~FHvGhLRsTiiG~flanl~e~~G~~Vt 151 (567)
T KOG1195 73 SGP-FVQFFLNRRRLIKSVLPIIEEQREKYGKNELGSGKKIVVEFSSPNIAKPFHVGHLRSTIIGNFLANLHEALGWEVT 151 (567)
T ss_pred CCC-EEEEEECHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_conf 887-3899866899999999999997523574224667569998048876665412411344541676514776187143
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHH-HHCCCCCCCCCHHHCCCCCHHHHHH--------HHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 020147753145556789875322-2102450006601102410000127--------8888875764134302379999
Q gi|254780285|r 163 REYYINDAGAQINTLALSVFWRYQ-QALYNNDSDLPEGYYPGVYLKHVGK--------ELADKYSSELLNFPEEKWLPIV 233 (586)
Q Consensus 163 r~nyvgD~G~Q~~~li~~~~~~~~-~~~~~~~~~~~e~~~~~~y~~~~~~--------e~~~~~~~~~~~~~e~~~~~~~ 233 (586)
|.||+||||+|||+++.++..... +.+..+ |..++-.+|++-... +.+..+.+.+. ..+++....|
T Consensus 152 r~NYLGDWGkQFgll~~g~~~~g~e~~L~~~----pI~hL~dvYVk~nk~~~~~~~~~~~are~f~rlE-~~d~e~~k~W 226 (567)
T KOG1195 152 RVNYLGDWGKQFGLLALGFQLYGDEEELQLN----PIKHLFDVYVKINKDAEKDPDTAEEAREFFKRLE-DGDEEHLKLW 226 (567)
T ss_pred EHHHHHHHHHHHHHHHCCHHHHCCHHHHCCC----HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-CCCHHHHHHH
T ss_conf 0266667888753775267760966654312----4889999999850555529466777778999874-0549999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEH
Q ss_conf 99978998875455588708752100015887301045799999999974985113426755565420002478156510
Q gi|254780285|r 234 KDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRS 313 (586)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (586)
.+ .++.+++...++|++|||+||.|.|||.+++ ..+..+++.+...|+.-+ ++|..+++.
T Consensus 227 qr-fr~lsIe~l~~~Y~Rl~v~FD~y~gESqv~~---e~~~~~~d~~rs~~l~~e----------------~dG~~vidL 286 (567)
T KOG1195 227 QR-FRDLSIEKLIKTYNRLNVKFDEYSGESQVSN---EKMQEALDLLRSANLTEE----------------IDGTIVIDL 286 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHCEEEEECCCHHHHHH---HHHHHHHHHHHHCCCCCC----------------CCCCEEEEE
T ss_conf 87-4540299999999871511000332579999---999999999985499656----------------788589980
Q ss_pred HHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEECCHHH
Q ss_conf 110222222-210246521356888999999752-25554333677761368999999999722663-451153110110
Q gi|254780285|r 314 TMVGDDVDR-PLLKSDGSYTYFAADLAYFKCKYE-RGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKK-AQINVLLCELVR 390 (586)
Q Consensus 314 ~~~g~~~d~-vl~rsDGt~~Y~t~DiA~~~~k~e-~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~-~~~~~~~~~~v~ 390 (586)
+++++...+ ++.|||||++|+|||||+++.|.+ .+||++|||+|+.|+.||.|+|.+++.||+++ .++.|+.||+|.
T Consensus 287 ~~~~~~~~~~~V~ksdgttLYltRdiaaal~Rl~~y~fdr~iYVvd~~Q~~hf~~lf~ilk~mg~~~a~~~qHV~~G~v~ 366 (567)
T KOG1195 287 SKIDKKAGKAVVQKSDGTTLYLTRDIAAALDRLEKYSFDRLIYVVDSQQKDHFCQLFEILKKMGFDWAKKLQHVNFGRVQ 366 (567)
T ss_pred CCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHCCHHHHHCCEECCCCCC
T ss_conf 35676542699983798332288899999999874484428998356878899999999999584256435144112112
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHH----------------------------HHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 12211000001223302456777776----------------------------32112345554200012333447776
Q gi|254780285|r 391 LYRDGMPIKMSKRAGDFITLRHVVDE----------------------------VGSDSVRFMMLWRKNSELLDFDFCKV 442 (586)
Q Consensus 391 l~~dg~~~kmstR~G~~v~l~dll~e----------------------------vg~~aiky~~L~~~~~~~~~Fd~d~~ 442 (586)
-||||+|.++.++|+++| +|++||...+++..+.++|.|+|+++
T Consensus 367 --------GmsTRkG~~~fl~dil~e~re~m~e~M~s~~t~~~~~~~~~~vad~lg~sAviv~d~k~rr~s~yeF~w~~~ 438 (567)
T KOG1195 367 --------GMSTRKGKVVFLDDILEEAREQMLEVMASNKTKPVQMANPDEVADRLGLSAVIVQDFKGRRISNYEFSWNRV 438 (567)
T ss_pred --------CCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHH
T ss_conf --------543567742318999999999999999736577777788789998874577879998887505636770030
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 53202443678888888899998753320024683223422355211499899999999842189999999852812799
Q gi|254780285|r 443 KEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLA 522 (586)
Q Consensus 443 l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~ 522 (586)
++ ++|+||||+||+|+|..||+||.+....+ ....++.+.+.++....|++.|++||++++++.+.++||.|.
T Consensus 439 ~~-~~gdtg~yLQY~HsRL~Slerk~~~~~~~------~l~~~d~~~l~ep~~~~Lv~~L~~fp~vve~s~e~lE~~~lV 511 (567)
T KOG1195 439 LS-FEGDTGPYLQYTHSRLRSLERKFSDVTLD------DLDEIDFSLLTEPDALLLVRLLLQFPEVVEKSMEQLEPCTLV 511 (567)
T ss_pred HE-ECCCCHHHHHHHHHHHHHHHHHCCCCCCH------HHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 02-16884478888787899999862566704------441021665177369999999850089999999762434379
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 999999998899987068666665435787899999999999999999998731587985445
Q gi|254780285|r 523 FYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 523 ~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
.||+.||.+++++|.. ++|. .++.++..+||+|..|+|+||.+||.||||+|++||
T Consensus 512 ~YL~~La~a~s~~yk~------l~V~-d~~~eia~aRL~Lf~AvRqVL~ngm~lLGitPv~~M 567 (567)
T KOG1195 512 TYLFKLAHAVSSAYKI------LWVK-DSPMEIALARLLLFSAVRQVLNNGMRLLGITPVDRM 567 (567)
T ss_pred HHHHHHHHHHHHHHHH------EEEC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 9999999999867761------0136-885777999999999999999967788488743559
No 7
>pfam00750 tRNA-synt_1d tRNA synthetases class I (R). Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only arginyl tRNA synthetase.
Probab=100.00 E-value=0 Score=591.88 Aligned_cols=314 Identities=32% Similarity=0.497 Sum_probs=266.9
Q ss_pred HHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHH
Q ss_conf 99998562213887656554100022344322441177777856899999999850666410201477531455567898
Q gi|254780285|r 102 LSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSV 181 (586)
Q Consensus 102 l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~ 181 (586)
|.+++.+ .+||+.. .+++||+||||||||||||||||+|||+|||+|||||+++||+|+|+|||||||+|||++++++
T Consensus 2 ~~~~~~~-~~~g~~~-~k~kkI~vE~~S~Np~kplHvGHlR~aiiGdslarll~~~G~~V~r~~yvnD~G~Qi~~l~~~~ 79 (345)
T pfam00750 2 VTKILAQ-GGLGSAL-LENKKVVVEFSSPNPAKPIHVGHLRSTIIGDALSRLLEFLGYDVVRENYVGDWGTQFGMLIASL 79 (345)
T ss_pred HHHHHCC-CCCCCCC-CCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHHHHHHHHHH
T ss_conf 6777327-6679877-8998899985389999885041015279999999999987995989987686489999999999
Q ss_pred HHHHHHHCCCC-CCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 75322210245-00066011024100001278888875764134302379999999789988754555887087521000
Q gi|254780285|r 182 FWRYQQALYNN-DSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFI 260 (586)
Q Consensus 182 ~~~~~~~~~~~-~~~~~e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~ 260 (586)
..+..+..... .....++.|.+.+....+.+..++...+.....+.+.... .+...+.+++.++++|+++|+.||.|+
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~-~~~~~~~~~~~~~~~l~~l~v~fD~~~ 158 (345)
T pfam00750 80 EAAAKEELTVPMPIQDLEDGYRGIKKDYIAEEIFAKEARNAVVLLQSGDEEF-REMWVLLIFDHIKQSLNKIYDDFDVTL 158 (345)
T ss_pred HHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCHHCCCHHH-HHHHHHHHHHHHHHHHHHHCCHHCCCC
T ss_conf 9856665455665056666421566888868999985899874500147999-999999999999999999640537671
Q ss_pred CHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 15887301045799999999974985113426755565420002478156510110222222210246521356888999
Q gi|254780285|r 261 SEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAY 340 (586)
Q Consensus 261 ~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~ 340 (586)
+||+.+. .+.+.++++.|+++|++++ ++|++|++.+.+|+++|+||+|||||+||+|+||||
T Consensus 159 ~Ese~~~--~~~v~~vl~~L~~~g~~~e----------------~dGA~~~~~~~~gd~~~~vl~rsDGt~~Y~t~DiAy 220 (345)
T pfam00750 159 HEGESVY--KGRMNDAVKDLKDNGLVYE----------------NDGALWLFLTEFGDDKDRVVIKSDGGALYITTDLAY 220 (345)
T ss_pred CHHHHHH--CCHHHHHHHHHHHCCCEEE----------------ECCCEEEECCCCCCCCCCEEEECCCCEEECHHHHHH
T ss_conf 0678884--4509999999987798897----------------489879942434787774478159950002468999
Q ss_pred HHHHHH-CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC--CCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-
Q ss_conf 999752-255543336777613689999999997226634--5115311011012211000001223302456777776-
Q gi|254780285|r 341 FKCKYE-RGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKA--QINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE- 416 (586)
Q Consensus 341 ~~~k~e-~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~--~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e- 416 (586)
|+||++ ++||++|||||++|++||+||+.+++.||+... ++.|+.|+++ +.+||+ |||||+|++|+++||++|
T Consensus 221 ~~~K~~~~~~D~~I~V~g~dq~~h~~~l~~~l~~lg~~~~~~~~~h~~~g~v-~~~dgk--kMStR~G~~v~l~dLl~ea 297 (345)
T pfam00750 221 AKERLEQRGFDLIIYVLGADQHGHIQRLFAAAAALGYDPESVEVLHIGFGVV-LGKDGK--RMSTRAGNVVTLDDLLDEA 297 (345)
T ss_pred HHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEE-ECCCCC--CCCCCCCCEEEHHHHHHHH
T ss_conf 9999872599868886474275699999999998599942361789999738-768996--1677887757899999999
Q ss_pred -------------------------HHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf -------------------------32112345554200012333447
Q gi|254780285|r 417 -------------------------VGSDSVRFMMLWRKNSELLDFDF 439 (586)
Q Consensus 417 -------------------------vg~~aiky~~L~~~~~~~~~Fd~ 439 (586)
||+||+||+||+++|+++|+||+
T Consensus 298 ~~~a~~~~~~~~~~~~~~~~~ia~~Vgi~Airy~~L~~~~~k~i~FDl 345 (345)
T pfam00750 298 LERAMDIKEKNRDLTADELEAVATAIGVDAARYADLSSNRDTDYIFDL 345 (345)
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 999999997366898778999998770767659998658898983589
No 8
>cd00671 ArgRS_core This is the catalytic core domain of Arginyl tRNA synthetase (ArgRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The other subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=100.00 E-value=0 Score=482.35 Aligned_cols=258 Identities=40% Similarity=0.614 Sum_probs=216.6
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf 10002234432244117777785689999999985066641020147753145556789875322210245000660110
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYY 201 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~ 201 (586)
||+||||||||||||||||+|||+|||||||||+++||+|+|+|||||||+|||++++++..++.+.. ....+.+++.|
T Consensus 1 KI~vEf~S~Np~kplHvGHlR~aiiGdslaril~~~G~~V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~-~~~~~~~~~~~ 79 (267)
T cd00671 1 KILVEFVSANPTGPLHVGHLRNAIIGDSLARILEFAGYDVTREYYINDWGRQIGLLILSLEKRGLELL-GEDKELPPDGY 79 (267)
T ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCC-CCCCCCCCCCH
T ss_conf 95988558999998503103638999999999998799588988507860999999999999720003-44457997303
Q ss_pred CCCCHHHHHHHHHHH-----HHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHH
Q ss_conf 241000012788888-----75764134302--37999999978998875455588708752100015887301045799
Q gi|254780285|r 202 PGVYLKHVGKELADK-----YSSELLNFPEE--KWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIR 274 (586)
Q Consensus 202 ~~~y~~~~~~e~~~~-----~~~~~~~~~e~--~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~ 274 (586)
.+.|+.+.++++.+. ...+.....++ .....+|...+..+++.+.++|+++| .||.|.+||++. ..+.
T Consensus 80 ~g~~y~~~~~~~~~~~~~~~~~~~~~~~le~~d~~~~~~~~~~~~~~i~~~~~~~~~l~-~fD~~~~ES~~~----~~~~ 154 (267)
T cd00671 80 LGEYYVEIAKRLEEDEEFEERAEELEKKLESGDEETIKLWRKLVLESIKADLETYGVLD-RFDVWFGESSYL----GEMG 154 (267)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEEECHHHHH----CCHH
T ss_conf 45789999999885844777768999865438899999999999999999999976666-663263388762----5278
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-CCCCCCC
Q ss_conf 999999974985113426755565420002478156510110222222210246521356888999999752-2555433
Q gi|254780285|r 275 DIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYE-RGFDNMI 353 (586)
Q Consensus 275 ~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e-~~~d~~i 353 (586)
.+++.|+++|.+.+ .+++++|++.+.+|+++|+||+||||++||+|+|||||++|++ ++||++|
T Consensus 155 ~v~~~L~~~~~~~~---------------e~dGA~~~~~~~~gd~~~~vl~ksDG~~tY~~~DiAy~~~K~~~~~~D~~I 219 (267)
T cd00671 155 KVVELLEELGLLVY---------------EEDGALWLDLTEFGDDKDRVLVKSDGTYTYFTRDIAYHLDKFEERGADKII 219 (267)
T ss_pred HHHHHHHHCCCEEE---------------EECCEEEEECHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999985578078---------------537809996201178877236725897653457999999999758989899
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCC-CCCCEEEECCHHHCCCCCCCCCCCCC
Q ss_conf 367776136899999999972266-34511531101101221100000122
Q gi|254780285|r 354 YVMGSDHSGYVKRLEAVAAAVSEK-KAQINVLLCELVRLYRDGMPIKMSKR 403 (586)
Q Consensus 354 yVv~~~Q~~h~~~v~~~~~~lg~~-~~~~~~~~~~~v~l~~dg~~~kmstR 403 (586)
||||++|++||+||+++++.||++ ..++.|+.||+|+|+++| |||||
T Consensus 220 ~V~g~dq~~hf~~v~~~l~~lg~~~~~~l~h~~~g~V~l~~~~---kmStR 267 (267)
T cd00671 220 YVVGADHHGHFKRLFAALELLGYPEAKKLEHILYGMVNLPDEG---KMSTR 267 (267)
T ss_pred EEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCC---CCCCC
T ss_conf 9979877999999999999759998887599985469989999---88898
No 9
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=100.00 E-value=3.4e-44 Score=329.05 Aligned_cols=156 Identities=31% Similarity=0.473 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 76321123455542000123334477765320244367888888889999875332002468322342235521149989
Q gi|254780285|r 415 DEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTS 494 (586)
Q Consensus 415 ~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (586)
++||+||+||++|++++.++|+||||+++++ +|||||||||||||+||||||++...... ...+...+.++.
T Consensus 1 e~Ig~~Airy~~L~~~~~~~~~FD~d~~~~~-~gnt~~YiQYa~aR~~SIl~k~~~~~~~~-------~~~~~~~l~~~~ 72 (156)
T cd07956 1 EEVGVGAVKYQDLSNKRIKDYTFDWERMLSF-EGDTGPYLQYAHARLCSILRKAGETIEAE-------ADADLSLLPEPD 72 (156)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEECHHHHHCC-CCCCCEEHHHHHHHHHHHHHHCCCCCCCC-------CCCCHHCCCCHH
T ss_conf 9642357888998638999845529998623-68985112489999999999724545332-------225420049989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998421899999998528127999999999988999870686666654357878999999999999999999987
Q gi|254780285|r 495 ELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGL 574 (586)
Q Consensus 495 E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L 574 (586)
|++|++.|++||+++.+|+++++||+||.||++||+.||+||++| +|++ ++++++.+||.||.++++||++||
T Consensus 73 e~~Li~~l~~fp~vl~~a~~~~~P~~l~~YL~~La~~F~~fY~~~------~Ii~-~~~~~~~~RL~L~~a~~~vL~~gL 145 (156)
T cd07956 73 ERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNAC------PVLG-AEEELRNARLALVAAARQVLANGL 145 (156)
T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC------CCCC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999996572899999997070699999999999999999749------8878-988999999999999999999986
Q ss_pred HHCCCCCCCCC
Q ss_conf 31587985445
Q gi|254780285|r 575 NIIGVESPNEM 585 (586)
Q Consensus 575 ~LLGI~~perM 585 (586)
+||||+|||||
T Consensus 146 ~lLGI~~~ekM 156 (156)
T cd07956 146 DLLGIEAPERM 156 (156)
T ss_pred HHCCCCCCCCC
T ss_conf 51198966669
No 10
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=99.97 E-value=5.1e-31 Score=236.59 Aligned_cols=122 Identities=38% Similarity=0.543 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88888889999875332002468322342235521149989999999984218999999985281279999999999889
Q gi|254780285|r 454 VQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFH 533 (586)
Q Consensus 454 iqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn 533 (586)
|||||||||||+||++..+..+.. ....+...+.++.||+|++.|.+||++|.+|+++++||+||+|+|+||+.||
T Consensus 1 iQYa~aRi~SIl~k~~~~~~~~~~----~~~~~~~~l~~~~E~~Li~~l~~f~~vl~~a~~~~~P~~l~~Yl~~La~~f~ 76 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPD----IADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFH 76 (122)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCC----CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 958899999999961223778643----2313353259999999999999778999999997695899999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9987068666665435787899999999999999999998731587985445
Q gi|254780285|r 534 GHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 534 ~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
+||++| +|+++++++++.+||+||.+|++||++||+||||+|||||
T Consensus 77 ~fY~~~------~Il~~~~~~~~~~RL~L~~~~~~vl~~~l~lLGI~~~ekM 122 (122)
T smart00836 77 SFYNKC------RVLGEENPELRAARLALLKAVRQVLANGLRLLGISAPERM 122 (122)
T ss_pred HHHHCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 998438------4236898999999999999999999999874199976779
No 11
>pfam05746 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Probab=99.97 E-value=5.8e-30 Score=229.16 Aligned_cols=117 Identities=38% Similarity=0.629 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88888889999875332002468322342235521149989999999984218999999985281279999999999889
Q gi|254780285|r 454 VQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFH 533 (586)
Q Consensus 454 iqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn 533 (586)
|||||||+|||+||++....... .+.....++.|++|++.|++||+++.+|+++++||.||+|+|+||+.||
T Consensus 1 iqYa~aRi~SIl~k~~~~~~~~~--------~~~~~~~~~~E~~Li~~l~~f~~~l~~a~~~~~P~~l~~Yl~~La~~f~ 72 (117)
T pfam05746 1 LQYAHARICSILRKAGELGINLD--------IDALLLLEEEEKELLKALLQFPEVVEEAAEELEPHRLANYLYDLASAFH 72 (117)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCC--------CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 97889999999984676677655--------4300129999999999880529999999986686999999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9987068666665435787899999999999999999998731587985445
Q gi|254780285|r 534 GHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 534 ~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
+||++| +|+++ +++.+.+||.|+.+|++||++||+||||+|||||
T Consensus 73 ~fY~~~------~Il~~-~~~~~~~RL~L~~~~~~vl~~gl~lLGI~~~ekM 117 (117)
T pfam05746 73 SFYNNC------RVLDE-DDEERNARLALLKAVRQVLKNGLDLLGIEAPEKM 117 (117)
T ss_pred HHHHHC------CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999719------67489-8899999999999999999999786198976779
No 12
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=99.91 E-value=1.7e-20 Score=162.70 Aligned_cols=390 Identities=21% Similarity=0.252 Sum_probs=222.5
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 41000223443224411777778568999999998506664102014775314555678987532221024500066011
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
|+.+|.-.=|+|++++|+||+|+.+++|.++|-+|..||+|.=..-.+|-|+.+-.-+. +.
T Consensus 1 k~~~it~p~Py~nG~lHlGHa~~~~~~Dv~~Ry~R~~G~~v~~~~GtD~hg~~i~~~A~-------~~------------ 61 (512)
T PRK11893 1 KKFYITTPIYYPNGKPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIERKAE-------EA------------ 61 (512)
T ss_pred CCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-------HC------------
T ss_conf 97899689998899734463587999999999999559970746871775199999999-------85------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHH
Q ss_conf 02410000127888887576413430237999999978998875455588708752100015887301045799999999
Q gi|254780285|r 201 YPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNL 280 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l 280 (586)
|.. ..|+ .+...+.++++++.+||.+|.|..-++- .....+.+++.+|
T Consensus 62 --g~~----p~e~------------------------~~~~~~~~~~~~~~l~i~~D~f~rT~~~--~~~~~v~~~f~~L 109 (512)
T PRK11893 62 --GIS----PQEL------------------------ADRNSASFKRLWEALNISYDDFIRTTDE--RHKEAVQEIFQRL 109 (512)
T ss_pred --CCC----HHHH------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHHHH
T ss_conf --999----9999------------------------9999999999999809988878779987--9999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCC------------------------CCCCCCCEEEEHHHCCCC-----------------
Q ss_conf 974985113426755565420------------------------002478156510110222-----------------
Q gi|254780285|r 281 ARQGYVYEGILPPPKSKTTQK------------------------CDMDRKQLLFRSTMVGDD----------------- 319 (586)
Q Consensus 281 ~~~g~~~e~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~g~~----------------- 319 (586)
.++|++|++.....-+..+.. ...+....+++.+.+.+.
T Consensus 110 ~~~G~iy~~~~~~~yc~~c~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~flkl~~~~~~l~~~~~~~~~~~~p~~~ 189 (512)
T PRK11893 110 LANGDIYLGKYSGWYCVRCEEFKTESEARLGEDGCPRCPIHGKPVEWVEEESYFFRLSKYQDKLLELYEANPDFIQPESR 189 (512)
T ss_pred HHCCCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEECCCCEECCHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf 76797743244432268864445777723665788655557997768724761120505467799997249865186999
Q ss_pred ------------CCCCCCCCC-----------CCHHHHHHH-----HHHHHHH-------HHCCCCCCCCCCCCCHHHHH
Q ss_conf ------------222210246-----------521356888-----9999997-------52255543336777613689
Q gi|254780285|r 320 ------------VDRPLLKSD-----------GSYTYFAAD-----LAYFKCK-------YERGFDNMIYVMGSDHSGYV 364 (586)
Q Consensus 320 ------------~d~vl~rsD-----------Gt~~Y~t~D-----iA~~~~k-------~e~~~d~~iyVv~~~Q~~h~ 364 (586)
.|..|-|.+ +...|+==| ++...+. +++-+...+.++|.|-.. |
T Consensus 190 ~~~~~~~l~~~l~d~~ISR~~~~WGi~vP~~~~~~~yvWfda~~~y~s~~~~~~~~~~~~~~~~w~~~vh~~G~Dii~-f 268 (512)
T PRK11893 190 RNEVINFVKSGLKDLSISRTNFDWGIPVPGDPKHVIYVWFDALLNYLTALGYDEPDLEELFRKYWPADVHLIGKDILR-F 268 (512)
T ss_pred HHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCCEEEHHHHHHHHHHHHCCCCCCCHHHHHHCCCCEEEECCCCCCC-H
T ss_conf 999999985778766152567878998888888620112531355677645887656478984487504323665120-1
Q ss_pred HHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHH
Q ss_conf 9999--999972266345115311011012211000001223302456777776321123455542000-1233344777
Q gi|254780285|r 365 KRLE--AVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN-SELLDFDFCK 441 (586)
Q Consensus 365 ~~v~--~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~-~~~~~Fd~d~ 441 (586)
..+. +.+..+|.+.++ .++..+++.+ +|+ |||+-.||+|...|++++.|.+++||++++..+ ..+.+|+|+.
T Consensus 269 H~~~~~a~l~~~~~~~p~-~~~~hg~l~~--~G~--KmSKS~Gn~I~~~d~l~~yg~D~lR~~L~~~~p~~~D~~Fs~~~ 343 (512)
T PRK11893 269 HAVYWPAFLMAAGLPLPK-RVFAHGFLTN--DGQ--KMSKSLGNVIDPFDLVDKFGVDAVRYFLLREIPFGQDGDFSEEA 343 (512)
T ss_pred HHHHHHHHHHHCCCCCCC-CCCCCEEEEE--CCC--EECCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 388899999866999886-3431114887--571--50134787589999999859504028776328877787878999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Q ss_conf 65320244367888888889999875332002468322342235521149989999999984218999999985281279
Q gi|254780285|r 442 VKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKL 521 (586)
Q Consensus 442 ~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l 521 (586)
........-+-=+.-..-|+-+.+.|.-+. .++.....++.+..++..+..+...+..+.++++.+..
T Consensus 344 f~~~~N~~l~~~~gNl~~R~~~~~~~~~~~------------~~p~~~~~~~~d~~~~~~~~~~~~~v~~~~e~~~~~~a 411 (512)
T PRK11893 344 FINRINADLANDLGNLLSRTLSMIAKYFDG------------KVPEPGEFSEADAALLEKADAALEQVREAMDNFAFHKA 411 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 998975899999999999999999875178------------78886658876899999999999999999971259999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-----------HHHHHHHCCCCCC
Q ss_conf 999999999889998706866666543578789999999999999999-----------9998731587985
Q gi|254780285|r 522 AFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASI-----------INSGLNIIGVESP 582 (586)
Q Consensus 522 ~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~v-----------L~~~L~LLGI~~p 582 (586)
+.-+++++...|.|-+... | -+....+.+..+...-.+..+.+.+ -+..+..||++..
T Consensus 412 ~~~i~~~~~~~N~y~~~~~--P-W~l~k~d~~~~~~il~~~~~~~~~l~ill~P~~P~~ae~l~~~Lg~~~~ 480 (512)
T PRK11893 412 LEAILELAAEANKYIDEQA--P-WSLAKTDPERLATVLYTLLESLRIIAVLLQPVMPELSAKILDQLGLEED 480 (512)
T ss_pred HHHHHHHHHHHHHHHHHCC--C-HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCC
T ss_conf 9999999999999988478--7-5331589999999999999999999999858435999999998499987
No 13
>cd00668 Ile_Leu_Val_MetRS_core This is the catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=99.89 E-value=1e-21 Score=171.38 Aligned_cols=268 Identities=20% Similarity=0.210 Sum_probs=155.6
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf 10002234432244117777785689999999985066641020147753145556789875322210245000660110
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYY 201 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~ 201 (586)
|.+|--.=||||+||||||+|+.+++|.++|.++..||+|......++.|+++...+... .. ...
T Consensus 1 ~~~i~~~~P~~nG~LHiGHar~~~~~Dv~~R~~r~~G~~V~~v~g~D~~G~~i~~~a~~~--~~-----~~~-------- 65 (334)
T cd00668 1 KFYITTPPPYVNGVLHLGHALTYTLKDIIARYKRMRGYNVLFPPGWDEHGLPIENKAEKE--GG-----IEG-------- 65 (334)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHH--CC-----CCC--------
T ss_conf 989955998888861466759899999999999816995360686686568999999996--87-----121--------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHH
Q ss_conf 24100001278888875764134302379999999789988754555887087521000158873010457999999999
Q gi|254780285|r 202 PGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLA 281 (586)
Q Consensus 202 ~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~ 281 (586)
. ..+.. ...+++ .+...+.++++++.||+.+|....-..........+.+++.+|.
T Consensus 66 -------~----~~~~~------------~~~~~~-~~~~~~~~~~~~~~lgi~~D~~~~~~T~~~~~~~~v~~~~~~L~ 121 (334)
T cd00668 66 -------K----KEEFL------------EDPKEW-VDKYIEEFKEQFKRLGISFDWDRFYRTTDPEYYEAVQWIFLKLY 121 (334)
T ss_pred -------C----HHHHH------------HHHHHH-HHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHHHHHHHHH
T ss_conf -------0----57777------------539999-99999999999999689768787611599999999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCCCCC-----------CCCCCEEE-------EHHHCCCCCCCCCC------------------
Q ss_conf 7498511342675556542000-----------24781565-------10110222222210------------------
Q gi|254780285|r 282 RQGYVYEGILPPPKSKTTQKCD-----------MDRKQLLF-------RSTMVGDDVDRPLL------------------ 325 (586)
Q Consensus 282 ~~g~~~e~~~~~~~~~~~~~~~-----------~~~~~~~~-------~~~~~g~~~d~vl~------------------ 325 (586)
++|++|++.......... ..+ .+....+. .........|..|-
T Consensus 122 ~~G~iy~~~~~v~~~~~~-f~~~~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~~~d~~isR~~~wG~~~P~~~~~~~~ 200 (334)
T cd00668 122 EKGLIYRGERPVRLTEQW-FLKLSKLKDRLLEALEKNEIWPENVRNRFLNWLENGLRDWCISRQRYWGIPIPAWYCEDCG 200 (334)
T ss_pred HCCCEEEECCCCCCCCEE-EEEHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCC
T ss_conf 879989505667756547-7788999999999998489877899999998874678775257334678755613325677
Q ss_pred ----------CCCCCH---------HHHHHHHHH-----HHHHHHCCCCCCCCCCCCCHH-HHHHHHHHHHHHHCCCCCC
Q ss_conf ----------246521---------356888999-----999752255543336777613-6899999999972266345
Q gi|254780285|r 326 ----------KSDGSY---------TYFAADLAY-----FKCKYERGFDNMIYVMGSDHS-GYVKRLEAVAAAVSEKKAQ 380 (586)
Q Consensus 326 ----------rsDGt~---------~Y~t~DiA~-----~~~k~e~~~d~~iyVv~~~Q~-~h~~~v~~~~~~lg~~~~~ 380 (586)
..++-. .|.+.. .. ...+++..+-.-|.+.|.|+. .|.....+.+.+++....-
T Consensus 201 ~~~~~~~~~~~~~~~~~~~Wfds~~~~~~~~-~~~~~~~~~~~~~~~~~~di~~~G~D~~~~h~~~~~a~~~a~~~~~~~ 279 (334)
T cd00668 201 EVCPKCGKELKRETDVLDVWFDSGIGYLSAL-GYPNEEEGFEEFEYWYPADLHVIGKDIIRFHLIYWPAMLLALFGKPPP 279 (334)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCCCCC-CCCCCCCHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCH
T ss_conf 5566653113687653446641756543226-786433256687617981698715613632999999999984498508
Q ss_pred CEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 11531101101221100000122330245677777632112345554200012
Q gi|254780285|r 381 INVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSE 433 (586)
Q Consensus 381 ~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~ 433 (586)
..++..|++.+ ++|+ |||+++||+|+++|+++++|.+++||++++..+..
T Consensus 280 ~~~~~~g~~~~-~~G~--KMSKS~GN~i~~~~~l~~~g~D~lR~~l~~~~~~~ 329 (334)
T cd00668 280 KNVLVHGLVLD-EGGR--KMSKSLGNVVDPLDAIEKYGADALRYYLLSAAPEG 329 (334)
T ss_pred HHEEECCCEEC-CCCC--CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC
T ss_conf 77574201983-8995--73886998889899998759489999999429988
No 14
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=99.88 E-value=9.9e-19 Score=150.34 Aligned_cols=392 Identities=16% Similarity=0.217 Sum_probs=220.4
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 41000223443224411777778568-99999999850666410201477531455567898753222102450006601
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVV-GDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiI-Gdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
+|++|--.=|+||+++|+||+.+++| +|.++|-.+..|++|.-.---++-|+.+-.-+. + .
T Consensus 3 ~k~~iTt~~Py~nG~lHiGH~~~~~l~aDi~aRy~R~~G~~v~~~~GtD~hG~~i~~~A~-------k-~---------- 64 (558)
T PRK12268 3 MRILITSAWPYANGPLHLGHLAGSYLPADVYARYQRLKGNEVLFVSGSDEHGTPIELEAE-------K-E---------- 64 (558)
T ss_pred CCEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-------H-C----------
T ss_conf 518984799888898552311141989999999998379987975840647499999999-------8-5----------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHH
Q ss_conf 10241000012788888757641343023799999997899887545558870875210001588730104579999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDN 279 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~ 279 (586)
|.. .+++ .+...+.+++++++|||.+|.|..-++- .....+.+++.+
T Consensus 65 ---g~~----p~e~------------------------~~~~~~~~~~~~~~lgis~D~f~rT~~~--~~~~~v~~~f~~ 111 (558)
T PRK12268 65 ---GVS----PQEL------------------------ADKYHEEHKEDFEKLGISYDNYTRTTSP--EHHELVQEFFLK 111 (558)
T ss_pred ---CCC----HHHH------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHHH
T ss_conf ---999----9999------------------------9999999999999819837768668988--999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCC------------------------------------------------CCCCCCEEE
Q ss_conf 99749851134267555654200------------------------------------------------024781565
Q gi|254780285|r 280 LARQGYVYEGILPPPKSKTTQKC------------------------------------------------DMDRKQLLF 311 (586)
Q Consensus 280 l~~~g~~~e~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~ 311 (586)
|.++|++|++.....-+..+... .......++
T Consensus 112 L~~~G~iy~~~~~~~yc~~~~~fl~d~~v~G~cP~c~~~~~~Gd~ce~cg~~~~~~dli~p~~~~~g~~~e~~~~~~~f~ 191 (558)
T PRK12268 112 LYENGYIEKKTIEQAYCPSDGRFLPDRYVEGTCPYCGYEKARGDQCDNCGALLDPTDLINPRSKISGSTPEFRETEHFFL 191 (558)
T ss_pred HHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHCCCCCCCCCCCCEEEECCCEEE
T ss_conf 99889933013534368411231312331540677687435673253247647857724885677899444773453021
Q ss_pred EHHHCCCC---------------------------CCCCCCC------------CCCCHH---------HHHHHHHHHHH
Q ss_conf 10110222---------------------------2222102------------465213---------56888999999
Q gi|254780285|r 312 RSTMVGDD---------------------------VDRPLLK------------SDGSYT---------YFAADLAYFKC 343 (586)
Q Consensus 312 ~~~~~g~~---------------------------~d~vl~r------------sDGt~~---------Y~t~DiA~~~~ 343 (586)
+...+.+. .|..|-| .+|... |++.-.-+...
T Consensus 192 ~l~~~~~~l~~~~~~~~~~p~~~~~~~~~~l~~~l~D~~ISR~~~WGipiP~~~~~~~~iyVW~Da~~~yis~~~~~~~~ 271 (558)
T PRK12268 192 DLPAFQEALRKWIESGTDWPPNVLNFTLNWLKEGLKPRAITRDLPWGIPIPFEGAEGKVFYVWFDAPIGYISATKEWAKR 271 (558)
T ss_pred CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEECCCCCCCCCEEEEECCCCCCHHHHHHHHHHC
T ss_conf 41877899999985388778899999999986337565455538786578855568967988657872203433654541
Q ss_pred H-----HH---CCC-CCCCCCCCCCHHHHHHHHH--HHHHHHCC--CCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 7-----52---255-5433367776136899999--99997226--6345115311011012211000001223302456
Q gi|254780285|r 344 K-----YE---RGF-DNMIYVMGSDHSGYVKRLE--AVAAAVSE--KKAQINVLLCELVRLYRDGMPIKMSKRAGDFITL 410 (586)
Q Consensus 344 k-----~e---~~~-d~~iyVv~~~Q~~h~~~v~--~~~~~lg~--~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l 410 (586)
. +. ... -..++++|-|- ..|..++ +.+...|. ..+. .++..|++.+ +|+ |||+-+||+|..
T Consensus 272 ~~~~~~~~~~W~~~~~~~~~f~GkDi-i~FH~v~wpa~l~a~~~~~~lP~-~i~~~g~~~~--~G~--KmSKS~Gnvi~p 345 (558)
T PRK12268 272 KGDPEAWKEFWLDSDTKYYYFIGKDN-IPFHSVIWPAMLLGSGEPYKLPT-AIVSSEYLTY--EGQ--KFSKSRGWGIWV 345 (558)
T ss_pred CCCHHHHHHHCCCCCCEEEEECCCCC-CHHHHHHHHHHHHHCCCCCCCCC-EEEEEEEEEE--CCC--CCCCCCCCCCCH
T ss_conf 69856798727899842776436665-43478799999973379877887-7877556874--684--114557887798
Q ss_pred HHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 77777632112345554200-01233344777653202443678888888899998753320024683223422355211
Q gi|254780285|r 411 RHVVDEVGSDSVRFMMLWRK-NSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQES 489 (586)
Q Consensus 411 ~dll~evg~~aiky~~L~~~-~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~ 489 (586)
+|++++.|.+++||++++.. ..+|.+|+|+....-...+-+-=+---..|+.+.+.|.-.. .++...
T Consensus 346 ~~~i~~yg~D~lRy~L~~~~~~~~D~~fs~~~~~~~~N~dL~~~~gNl~~R~~~~~~k~~~g------------~~p~~~ 413 (558)
T PRK12268 346 DDALERLPPDYLRYYLAANAPENSDTDFTWEEFIRRVNSELADKYGNLVNRVLSFIEKNFGG------------EVPEPG 413 (558)
T ss_pred HHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------CCCCCC
T ss_conf 99998749077789988548888888879999999999999999999999999999986589------------789876
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 49989999999984218999999985281279999999999889998706866666543578789999999999999999
Q gi|254780285|r 490 EFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASI 569 (586)
Q Consensus 490 ~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~v 569 (586)
...+.+..|+..+......+..+.+.++.+..++-+++++..-|.|.+... | -+..+.+.+.+...--.++.+.+.+
T Consensus 414 ~~~~~d~~l~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~~~~~N~y~~~~~--P-W~l~k~d~~~~~~vl~~~l~~lr~~ 490 (558)
T PRK12268 414 ELGEEDEELLEKFQELFKEVGEHYEAIEFKKALEEIMELARLANKYLNEKA--P-WKLAKTDPERAAAVLYTALNLVKLL 490 (558)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCC--C-HHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 798565999999999999999999751799999999999999999998379--8-5431689999999999999999999
Q ss_pred -----------HHHHHHHCCCCCCCC
Q ss_conf -----------999873158798544
Q gi|254780285|r 570 -----------INSGLNIIGVESPNE 584 (586)
Q Consensus 570 -----------L~~~L~LLGI~~per 584 (586)
-+..+..||++.-++
T Consensus 491 ~ilL~P~mP~~se~i~~~Lg~~~~~~ 516 (558)
T PRK12268 491 AILLYPFLPFSAEKIWEMLGLPNIEK 516 (558)
T ss_pred HHHHHCHHHHHHHHHHHHCCCCCCCC
T ss_conf 99986740399999999849997755
No 15
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=99.85 E-value=5.2e-18 Score=145.33 Aligned_cols=351 Identities=19% Similarity=0.200 Sum_probs=213.8
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
.+++.|--.=|.+|+++|+||++++++.|.++|-.|..||+|.=..=.++-|+.+..-+.. ++.
T Consensus 3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~------~g~---------- 66 (644)
T PRK12267 3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEE------AGI---------- 66 (644)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH------CCC----------
T ss_conf 9998996899888998554534878999999999984699759848768752999999998------599----------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHH
Q ss_conf 10241000012788888757641343023799999997899887545558870875210001588730104579999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDN 279 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~ 279 (586)
. .+++ .+...+.++++++++||.||.|..-++-. ....+.+++.+
T Consensus 67 -----t----P~e~------------------------~d~~~~~~~~~~~~l~Is~D~f~rTt~~~--h~~~vq~if~~ 111 (644)
T PRK12267 67 -----T----PQEY------------------------VDEISAGFKDLWDKLDISYDKFIRTTDER--HKKVVQKVFEK 111 (644)
T ss_pred -----C----HHHH------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCHH--HHHHHHHHHHH
T ss_conf -----9----9999------------------------99999999999998699678785489889--99999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCC--------------------CCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCH---H----
Q ss_conf 99749851134267555654--------------------20002478156510110222222210246521---3----
Q gi|254780285|r 280 LARQGYVYEGILPPPKSKTT--------------------QKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSY---T---- 332 (586)
Q Consensus 280 l~~~g~~~e~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~---~---- 332 (586)
|.++|++|++.....-+..+ .....+....+|+.+.+.+..- -.++++... -
T Consensus 112 L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d~g~cp~cg~~~e~~~ee~yffkL~~~~~~L~-~~~~~~p~~i~p~~~~n 190 (644)
T PRK12267 112 LYDQGDIYLGEYEGWYCVSCETFFTESQLVDGGKCPDSGHEVELVKEESYFFRMSKYADRLL-EFYEENPDFIQPESRKN 190 (644)
T ss_pred HHHCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEECCCCEEEEHHHHHHHHH-HHHHCCCCEECCHHHHH
T ss_conf 99889978665512325875433362440457868778997646405651443466789999-99960997467625887
Q ss_pred -----HH---HHHHHHHH----HHHHC--CCCCCCCCCCC-------------CHH------------------HHHHHH
Q ss_conf -----56---88899999----97522--55543336777-------------613------------------689999
Q gi|254780285|r 333 -----YF---AADLAYFK----CKYER--GFDNMIYVMGS-------------DHS------------------GYVKRL 367 (586)
Q Consensus 333 -----Y~---t~DiA~~~----~k~e~--~~d~~iyVv~~-------------~Q~------------------~h~~~v 367 (586)
++ .+|++-.+ |-+.. ..++++|||=. +.. ..|..+
T Consensus 191 e~~~~~l~~gL~D~~ISR~~~~WGipvP~d~~~v~YVWfDA~i~Yisa~g~~~~~~~~~~~~Wp~~~h~iGkDii~FH~i 270 (644)
T PRK12267 191 EMLNNFIKPGLEDLAVSRTSFDWGIPVPSDPKHVVYVWIDALLNYITALGYGSDDDELFMKFWPADVHLVGKDILRFHAI 270 (644)
T ss_pred HHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHCCHHHCCCCCCHHHHHHH
T ss_conf 99999985778554302477888885789876079984224300343413862122667763731330268553236688
Q ss_pred H--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
Q ss_conf 9--999972266345115311011012211000001223302456777776321123455542000-1233344777653
Q gi|254780285|r 368 E--AVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN-SELLDFDFCKVKE 444 (586)
Q Consensus 368 ~--~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~-~~~~~Fd~d~~l~ 444 (586)
+ +.+..+|++.++ .+...|++++ +|. |||+-.||+|...|++++.|.+++||++++.-+ ..|.+|+|+....
T Consensus 271 ~wpamL~~~~~~~p~-~v~~hg~~~~--~g~--KmSKS~Gn~i~~~~~~~~~g~D~lRyyl~~~~~~~~D~dfs~~~f~~ 345 (644)
T PRK12267 271 YWPIMLMALDLPLPK-HLFAHGWWLM--KDG--KMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEAFVE 345 (644)
T ss_pred HHHHHHHHCCCCCCC-EEECCCEEEC--CCC--EECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 999999976999864-4510441871--786--00553684223799987559404364644448878777789999999
Q ss_pred HCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 202443-6788888888999987533200246832234223552114998999999998421899999998528127999
Q gi|254780285|r 445 QSKENP-VFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAF 523 (586)
Q Consensus 445 ~~~~nt-~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~ 523 (586)
--...- .-+.-.+ .|+.+...|+-+. .++.....++.+.+|+..+......+.++.+.++.+.-++
T Consensus 346 r~NsdL~n~lGNl~-~R~~~~~~k~~~g------------~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~ 412 (644)
T PRK12267 346 RINSDLANDLGNLL-NRTVAMINKYFDG------------EIPAYKGVTEFDEELLALAKETLKKYEEAMEALQFSRALE 412 (644)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHCCC------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 98899887777899-9999998875188------------6788877874569999999999999999997126999999
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999998899987068
Q gi|254780285|r 524 YLYDLASVFHGHWSHGR 540 (586)
Q Consensus 524 Yl~~La~~Fn~fY~~~~ 540 (586)
-+.+|+..-|+|-+...
T Consensus 413 ~i~~l~~~~N~Yi~~~~ 429 (644)
T PRK12267 413 ELWKLISRANKYIDETA 429 (644)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999888578
No 16
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=99.80 E-value=1.7e-16 Score=134.66 Aligned_cols=344 Identities=19% Similarity=0.237 Sum_probs=200.3
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 41000223443224411777778568999999998506664102014775314555678987532221024500066011
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
+++.|--.=|-+++++|+||+++++..|.++|-.|..|++|.=..=-++-|+.+..-+.. +
T Consensus 2 k~~~iTt~ipY~Ng~~HiGH~~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~~i~~~A~~------~------------- 62 (666)
T PRK00133 2 RKILVTCALPYANGPIHLGHLLEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEK------E------------- 62 (666)
T ss_pred CCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH------C-------------
T ss_conf 877981798788898431246769999999999983699549847427884899999998------5-------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHH
Q ss_conf 02410000127888887576413430237999999978998875455588708752100015887301045799999999
Q gi|254780285|r 201 YPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNL 280 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l 280 (586)
... .. ++ .+...+.++++++++||.||.|..-++-. ....+.+++.+|
T Consensus 63 ----------------------g~t----p~---e~-~d~~~~~~~~~~~~l~Is~D~f~rTt~~~--h~~~vq~~f~~l 110 (666)
T PRK00133 63 ----------------------GIT----PE---EL-IARYHAEHKRDFAGFGISFDNYGSTHSEE--NRELAQEIYLKL 110 (666)
T ss_pred ----------------------CCC----HH---HH-HHHHHHHHHHHHHHCCCCCCCCCCCCCHH--HHHHHHHHHHHH
T ss_conf ----------------------999----99---99-99999999999998399578785789889--999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCCCC------------------------------------------------CCCCCCEEEE
Q ss_conf 9749851134267555654200------------------------------------------------0247815651
Q gi|254780285|r 281 ARQGYVYEGILPPPKSKTTQKC------------------------------------------------DMDRKQLLFR 312 (586)
Q Consensus 281 ~~~g~~~e~~~~~~~~~~~~~~------------------------------------------------~~~~~~~~~~ 312 (586)
.++|++|++.....-+..+... ..+....+|+
T Consensus 111 ~~~G~iy~~~~~~~Yc~~~e~fl~Dr~V~GtCP~C~~~~~~GD~Ce~cG~~~~p~eL~~p~~~~~g~~~e~~~~e~~ff~ 190 (666)
T PRK00133 111 KENGYIYERTIEQLYDPEKGMFLPDRFVKGTCPKCGAEDQYGDNCEVCGATYSPTELINPKSAISGATPVLKESEHFFFK 190 (666)
T ss_pred HHCCCEEEEEEEEEECCCCCCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCEEECCCCHHHH
T ss_conf 97899897403555668756552542342025777871204874224565167344238643457985166035333313
Q ss_pred HHHCCCCCCCCCCCCCCCHHHH-----------HHHHHHH---HH-HHH--CCCCCCCCCC-------------------
Q ss_conf 0110222222210246521356-----------8889999---99-752--2555433367-------------------
Q gi|254780285|r 313 STMVGDDVDRPLLKSDGSYTYF-----------AADLAYF---KC-KYE--RGFDNMIYVM------------------- 356 (586)
Q Consensus 313 ~~~~g~~~d~vl~rsDGt~~Y~-----------t~DiA~~---~~-k~e--~~~d~~iyVv------------------- 356 (586)
.+.+.+..-. .++++.-+--. .+|++-. .| =.. ...++++|||
T Consensus 191 Ls~~~~~L~~-~~~~~~~~~~~~n~~~~~l~~gL~D~~ISR~~~W~GipvP~~~~kv~YVW~DA~igYis~t~~~~~~~~ 269 (666)
T PRK00133 191 LPDFEEFLKE-WTRSGALQPNVANKMKEWLEEGLQDWDISRDAPYFGFEIPGAPGKVFYVWLDAPIGYISSTKNLCDKRG 269 (666)
T ss_pred HHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHCCCCCCCEEEECCCCCEECCCCCCEEEEEEECCCHHHHHHHHHHCCCCC
T ss_conf 8777789987-510488987899999999857887753040278444588898764899961564537776443314356
Q ss_pred -------------------CCCHHHHHHHHH--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf -------------------776136899999--99997226634511531101101221100000122330245677777
Q gi|254780285|r 357 -------------------GSDHSGYVKRLE--AVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVD 415 (586)
Q Consensus 357 -------------------~~~Q~~h~~~v~--~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~ 415 (586)
|-| ...|..++ +.+...|++.+. .+...|++.+ +|+ |||+-.||+|..+++++
T Consensus 270 ~~~~~~W~~d~~~~~vhfiGKD-ii~FH~i~wPa~L~~~g~~lP~-~v~~hg~l~~--~G~--KmSKS~Gnvv~p~~~l~ 343 (666)
T PRK00133 270 LDWDEYWKKDSDTELYHFIGKD-IIYFHTLFWPAMLEGAGYRLPT-NVFAHGFLTV--EGA--KMSKSRGTFIWARTYLD 343 (666)
T ss_pred CCHHHCCCCCCCCCEEEECCCC-HHHHHHHHHHHHHHHCCCCCCC-CCCCCCCEEE--CCE--EEECCCCEEEEHHHHHH
T ss_conf 5587638899876336753443-1146476799999846778886-1211464877--880--60012671761799998
Q ss_pred HHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 63211234555420001--23334477765320244367-8888888899998753320024683223422355211499
Q gi|254780285|r 416 EVGSDSVRFMMLWRKNS--ELLDFDFCKVKEQSKENPVF-YVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFD 492 (586)
Q Consensus 416 evg~~aiky~~L~~~~~--~~~~Fd~d~~l~~~~~nt~~-YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~ 492 (586)
+.|.+++||++++.-+. +|.+|+|+.+..--..+-+- +--. -.|+.+...|+-+. .++. .
T Consensus 344 ~yg~D~lRY~l~~~~p~~~~D~dfs~~~~~~r~NsdLan~lGNl-~~R~~~~~~k~~~g-------~vp~---------~ 406 (666)
T PRK00133 344 HLDPDYLRYYLAAKLPSRIDDIDFNWEDFQQRVNSDLVGKLVNF-ASRAAGFINKRFDG-------KLPD---------E 406 (666)
T ss_pred HCCCCCEEHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCC-------CCCC---------C
T ss_conf 66964530203310789876778699999999868888766689-99999999986599-------7899---------7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999984218999999985281279999999999889998706
Q gi|254780285|r 493 TSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHG 539 (586)
Q Consensus 493 ~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~ 539 (586)
+.+.+|+..+...++.+.++.+.++++.-+.-+.+|++.-|+|-+..
T Consensus 407 ~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~~i~~l~~~~NkYi~~~ 453 (666)
T PRK00133 407 LADPELLEEFRAAAESIAEAYEAREFRKALREIMALADRANKYVDDK 453 (666)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 45899999999999999999981069999999999999998887744
No 17
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=99.77 E-value=4.1e-15 Score=124.98 Aligned_cols=200 Identities=13% Similarity=0.135 Sum_probs=116.7
Q ss_pred CCCCCCCHH-HHH-HHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 336777613-689-999999997226634511531101101221100000122330245677777632112345554200
Q gi|254780285|r 353 IYVMGSDHS-GYV-KRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK 430 (586)
Q Consensus 353 iyVv~~~Q~-~h~-~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~ 430 (586)
+++.|.||- .|| ..++......| ..+--.++..|+| +.++|+ |||+.+||+|..+|++++-|.+|+||.+++..
T Consensus 494 ~~~~G~Di~r~W~~~~l~~~~~l~~-~~Pfk~v~~~G~v-ld~~G~--KMSKS~GNvi~p~eii~~yGADalR~~la~~~ 569 (809)
T PRK13208 494 LRPQGHDIIRTWLFYTILRAYLLTG-KLPWKNIMISGMV-LDPDGK--KMSKSKGNVVDPEELLEKYGADAVRYWAANSR 569 (809)
T ss_pred EEECHHHHHHHHHHHHHHHHHHHCC-CCCCHHCCCCCEE-ECCCCC--CCCCCCCCCCCHHHHHHHCCCHHHHHHHHCCC
T ss_conf 4434059887399999999998538-8860201114605-546774--34777889689789865338099999996189
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 01233344777653202443678888888899998753320024683223422355211499899999999842189999
Q gi|254780285|r 431 NSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIE 510 (586)
Q Consensus 431 ~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~ 510 (586)
+..++.|+++.+.. . .+.. --+|.-+|-... -.. ... ........++..+-++..|...-.-+.
T Consensus 570 ~~~d~~~~~~~~~~-~-~~~~-~klwN~~rf~~~--~~~----~~~-------~~~~~~~~~~lDrwils~l~~~i~~v~ 633 (809)
T PRK13208 570 LGSDTRFSEKQIKI-G-KRLL-TKLWNASRFVSS--FIE----PEK-------IEEKAPILEPVDRWILAKLNRVVKKAT 633 (809)
T ss_pred CCCCCCCCHHHHHH-H-HHHH-HHHHHHHHHHHH--CCC----CCC-------CCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 44465668999999-9-9999-999999999997--035----456-------667632257889999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9998528127999999999-9889998706866666543578789999999999999999999873158
Q gi|254780285|r 511 NATIAQEPYKLAFYLYDLA-SVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIG 578 (586)
Q Consensus 511 ~a~~~~~P~~l~~Yl~~La-~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLG 578 (586)
++.+++..+..++-+++.. ..|+++|-.-. .+.+. ....+.+.+.+. .....+|+..+.||.
T Consensus 634 ~~~e~y~f~~a~~~i~~F~~~~l~~~Yie~~-k~R~~-~~~~~~~~~~a~----~tL~~vL~~~l~lla 696 (809)
T PRK13208 634 EALENYDFAEALEEIESFFWHDFCDNYLELV-KSRAY-GEDGSEEQKSAI----YTLYTVLRTLLKLLA 696 (809)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHC-CCCCCHHHHHHH----HHHHHHHHHHHHHHH
T ss_conf 9997358999999999999998789999998-89871-488818899999----999999999999998
No 18
>pfam09334 tRNA-synt_1g tRNA synthetases class I (M). This family includes methionyl tRNA synthetases.
Probab=99.73 E-value=2.3e-16 Score=133.73 Aligned_cols=264 Identities=20% Similarity=0.284 Sum_probs=143.3
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCC
Q ss_conf 00223443224411777778568999999998506664102014775314555678987532221024500066011024
Q gi|254780285|r 124 NIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPG 203 (586)
Q Consensus 124 vVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~ 203 (586)
+|.-.=|||+++||+||+|+.++.|.++|-++..||+|.-.--.+|.|+.+-.-+. + + |
T Consensus 2 ~I~~ppP~~nG~lHiGHa~~~~~~Dvl~R~~r~~G~~V~~v~g~D~~g~~i~~ka~-------~----------~----g 60 (388)
T pfam09334 2 LITTALPYVNGPPHIGHLYTTIPADVYARYLRLRGYDVLFVTGTDEHGTKIELAAE-------K----------E----G 60 (388)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHH-------H----------C----C
T ss_conf 89378988888600224188999999999999569970713864853799999999-------8----------4----9
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 10000127888887576413430237999999978998875455588708752100015887301045799999999974
Q gi|254780285|r 204 VYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQ 283 (586)
Q Consensus 204 ~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~ 283 (586)
. . .. ++ .+...+.+++++++|||.+|.+..-++- .....+.+++.+|.++
T Consensus 61 ~--------------------~----~~---e~-~~~y~~~~~~~~~~lgi~~D~~~~t~~~--~~~~~v~~~f~~L~~~ 110 (388)
T pfam09334 61 V--------------------T----PQ---EL-VDRYHEEFKELFKKFNISFDDFIRTTSE--RHKELVQEFFLKLYEK 110 (388)
T ss_pred C--------------------C----HH---HH-HHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHHHHHHHHHHHHC
T ss_conf 9--------------------9----99---99-9999999999999839967878657984--6899999998751406
Q ss_pred CCCCCCCCCCCCCCCCCC--CC--CC------------C---CCE--EEEHHHCCCC------CCCCCCCCCCCHHHHHH
Q ss_conf 985113426755565420--00--24------------7---815--6510110222------22221024652135688
Q gi|254780285|r 284 GYVYEGILPPPKSKTTQK--CD--MD------------R---KQL--LFRSTMVGDD------VDRPLLKSDGSYTYFAA 336 (586)
Q Consensus 284 g~~~e~~~~~~~~~~~~~--~~--~~------------~---~~~--~~~~~~~g~~------~d~vl~rsDGt~~Y~t~ 336 (586)
|++|++.....-+..... .+ .+ . ..+ .+........ .+.....+++-++= ..
T Consensus 111 G~iy~~~~~~~y~~~~~~~l~d~~v~g~cp~~~~~~~~~~~~e~~G~~~e~~~~~~~~~~~~~~~~~~~~~~~~f~~-l~ 189 (388)
T pfam09334 111 GDIYEGEYEGWYCVSDERFLPDRYVEGTCPYCGSEDARGDQCEVCGRPLEPTELINPRSAISGSTPELKEEEHYFFR-LS 189 (388)
T ss_pred CCEEECCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCHHHCCCCCCCHHHHCCCCCCCCCCCCEEECCCCHHHH-HH
T ss_conf 81553241122366666666533307545755750136641002388278677417644467997544324412330-68
Q ss_pred HHH-----H----------------HHHH----------------HH--CCCCCCCCC----------------------
Q ss_conf 899-----9----------------9997----------------52--255543336----------------------
Q gi|254780285|r 337 DLA-----Y----------------FKCK----------------YE--RGFDNMIYV---------------------- 355 (586)
Q Consensus 337 DiA-----~----------------~~~k----------------~e--~~~d~~iyV---------------------- 355 (586)
+++ + ..|- .. ...++++||
T Consensus 190 ~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~l~Dw~ISR~~~WG~~iP~~~~~~~~vW~da~~~~~~~~~~~~~~~~~~ 269 (388)
T pfam09334 190 KFQDKLLEWIKENPDEPPSNVNEVVLSWLKEGLKDLSITRDLDWGIPVPGDPGKVIYVWFDALIGYISATKYLSGNPEKW 269 (388)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHH
T ss_conf 89999999995499889889999999998668887644124778750488898068772356555200027777781788
Q ss_pred ---------------CCCCHHHHHHHHH-HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf ---------------7776136899999-999972266345115311011012211000001223302456777776321
Q gi|254780285|r 356 ---------------MGSDHSGYVKRLE-AVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGS 419 (586)
Q Consensus 356 ---------------v~~~Q~~h~~~v~-~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~ 419 (586)
+|.|...+..-.+ +.+...|++..+ .++..+++.+ +|+ |||+-.||+|...|++++.|.
T Consensus 270 ~~~w~~~~~~~~i~~~G~Di~~fh~~~~~a~~~~~~~~~~~-~~~~~g~v~~--~G~--KMSKSlGN~i~~~d~i~~yga 344 (388)
T pfam09334 270 KKFWADDPDTEIVHFIGKDIIRFHAIYWPAMLMAAGLPLPT-QVFAHGWLTV--EGG--KMSKSRGNVVDPDELLDRYGV 344 (388)
T ss_pred HHHCCCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCC-EEEEEEEEEE--CCE--ECCCCCCCCCCHHHHHHHCCC
T ss_conf 86443677620001067641420178999999838999886-6787579975--994--447869987888999988782
Q ss_pred HHHHHHHHHHC-CHHHHHHHHHHHHH
Q ss_conf 12345554200-01233344777653
Q gi|254780285|r 420 DSVRFMMLWRK-NSELLDFDFCKVKE 444 (586)
Q Consensus 420 ~aiky~~L~~~-~~~~~~Fd~d~~l~ 444 (586)
+|+||++++.. ...++.|+++++..
T Consensus 345 DalR~~L~~~~~~~~d~~Fs~~~~~~ 370 (388)
T pfam09334 345 DALRYYLAREAPEGKDGDFSWEDFVE 370 (388)
T ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 89999999539998999899999999
No 19
>pfam03485 Arg_tRNA_synt_N Arginyl tRNA synthetase N terminal domain. This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.
Probab=99.71 E-value=4.8e-17 Score=138.55 Aligned_cols=83 Identities=33% Similarity=0.470 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 99999999999998604888212245277417880127411048999888828997999999998345789731488547
Q gi|254780285|r 6 DFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDSVFIAG 85 (586)
Q Consensus 6 ~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~vevag 85 (586)
.+++.|.++|.++ +.... ...+.|+.|++++|||||||+||.+||.+|++|++||++|++.+..++.+++++++|
T Consensus 2 ~l~~~i~~al~~~----~~~~~-~~~~~ie~~~~~~~GD~~~n~a~~lak~~~~~P~~iA~~i~~~l~~~~~i~~v~vag 76 (84)
T pfam03485 2 LLKKAIAAALAKA----GLDLE-EIDPVIETPKDPEFGDYATNVAMLLAKKLKKNPREIAEEIAEKLPKSDLIEKVEIAG 76 (84)
T ss_pred HHHHHHHHHHHHC----CCCCC-CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 7899999999986----99823-176588779999776525689999852237998999999999725678676999958
Q ss_pred CCEEEEEE
Q ss_conf 97687888
Q gi|254780285|r 86 KGFINLYL 93 (586)
Q Consensus 86 pGfIN~~l 93 (586)
||||||+|
T Consensus 77 pGfiN~~l 84 (84)
T pfam03485 77 PGFINFFL 84 (84)
T ss_pred CCEEEEEC
T ss_conf 97798869
No 20
>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.70 E-value=1.1e-15 Score=128.87 Aligned_cols=256 Identities=20% Similarity=0.321 Sum_probs=140.8
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf 10002234432244117777785689999999985066641020147753145556789875322210245000660110
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYY 201 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~ 201 (586)
|++|.-+=|.|++++|+||+|+.++-|.+.|.|++.||+|.-.--++|-|..+-.
T Consensus 1 ~~~v~~~~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd~~~kIi~------------------------- 55 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQ------------------------- 55 (319)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH-------------------------
T ss_conf 9899689987889855330688999999999999659956996877787089999-------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHH
Q ss_conf 24100001278888875764134302379999999789988754555887087521000158873010457999999999
Q gi|254780285|r 202 PGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLA 281 (586)
Q Consensus 202 ~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~ 281 (586)
+..++ ... .. ++ .+...+.+.++++.|||.+|.+..-++-. ....+.+++++|.
T Consensus 56 --------------kA~~~--g~~----~~---el-~~~y~~~~~~~~~~L~I~~d~~~r~~~~~--~~~~v~~~i~~L~ 109 (319)
T cd00814 56 --------------KAEEE--GVT----PQ---EL-CDKYHEIFKELFKWLNISFDYFGRTTSPR--HKEIVQEFFKKLY 109 (319)
T ss_pred --------------HHHHC--CCC----HH---HH-HHHHHHHHHHHHHHCCCCCCCCCCCCCHH--HHHHHHHHHHHHH
T ss_conf --------------99983--998----79---99-99999999999998499878676678806--8999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCC--CCC-CCCCCEEEEHHHCCCC-----------------------------CCCCCCCC--
Q ss_conf 7498511342675556542--000-2478156510110222-----------------------------22221024--
Q gi|254780285|r 282 RQGYVYEGILPPPKSKTTQ--KCD-MDRKQLLFRSTMVGDD-----------------------------VDRPLLKS-- 327 (586)
Q Consensus 282 ~~g~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~g~~-----------------------------~d~vl~rs-- 327 (586)
++|++|+......-+..+. ... .+.+..+++...+.+. .|..+-|.
T Consensus 110 ~~G~~y~~~~~~~y~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~isR~~~ 189 (319)
T cd00814 110 ENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDKLLEWLEENPDFIWPENARNEVLSWLKEGLKDLSITRDLF 189 (319)
T ss_pred HCCCEEEECCEEEECCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCC
T ss_conf 78988884102636588764564664226378788997899999996098764680577888776543777200103555
Q ss_pred ---------CCCHHHHHHHH--HHH------HHHHHC------CCCCCCCCCCCCHHHHHHHHH-HHHHHHCCCCCCCEE
Q ss_conf ---------65213568889--999------997522------555433367776136899999-999972266345115
Q gi|254780285|r 328 ---------DGSYTYFAADL--AYF------KCKYER------GFDNMIYVMGSDHSGYVKRLE-AVAAAVSEKKAQINV 383 (586)
Q Consensus 328 ---------DGt~~Y~t~Di--A~~------~~k~e~------~~d~~iyVv~~~Q~~h~~~v~-~~~~~lg~~~~~~~~ 383 (586)
+|-++|+--|- +|. .+..+. .....|.+.|.|--.|-...+ +.+.+.|++.++ ..
T Consensus 190 ~WG~~~P~~~~~~~yvW~da~~gy~~~~~~~~~~~~~~~~~~~~~~~~ih~~G~Di~~~H~~~~~a~~~a~~~~~~~-~~ 268 (319)
T cd00814 190 KWGIPVPLDPDKVIYVWFDALIGYISATGYYTDEWGNSWWWNDPWPELVHFIGKDIVPFHAIYWPAMLLGAGLPLPT-RI 268 (319)
T ss_pred CCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-EE
T ss_conf 45898889888543002101234000146666656876444568841267844764318887899999856998786-88
Q ss_pred EECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 31101101221100000122330245677777632112345554200012
Q gi|254780285|r 384 LLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSE 433 (586)
Q Consensus 384 ~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~ 433 (586)
++.+++++ ||+ |||+-.||+++++|++++.+.+++||++|+..+..
T Consensus 269 ~~~g~l~~--~Ge--KMSKSlGN~i~~~dll~~~~~d~lR~~lls~~p~~ 314 (319)
T cd00814 269 FAHGYLTV--EGK--KMSKSRGNVVDPDDLLERYGADALRYYLLRERPEG 314 (319)
T ss_pred EECCEEEE--CCE--ECCCCCCCCCCHHHHHHHCCCHHEHHHHHCCCCCC
T ss_conf 87023998--994--63772997445999998779135668776168888
No 21
>TIGR00398 metG methionyl-tRNA synthetase; InterPro: IPR002304 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Methionyl-tRNA synthetase (6.1.1.10 from EC) is an alpha 2 dimer that belongs to class Ia. In some species (archaea, eubacteria and eukaryota) a coding sequence, similar to the C-term end of MetRS, is present as an independent gene which is a tRNA binding domain as a dimer. In eubacteria, MetRS can also be splitted in two sub-classes corresponding to the presence of one or two CXXC domain specific to zinc binding. The crystal structures of a number of methionyl-tRNA synthases are known , , .; GO: 0000166 nucleotide binding, 0004825 methionine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006431 methionyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.65 E-value=6.3e-14 Score=116.68 Aligned_cols=380 Identities=21% Similarity=0.284 Sum_probs=217.4
Q ss_pred CCCCCCCCHHHHH-HHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHH
Q ss_conf 4322441177777-856899999999850666410201477531455567898753222102450006601102410000
Q gi|254780285|r 130 ANPTGPMHVGHCR-CAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKH 208 (586)
Q Consensus 130 pNp~KplHVGHlR-saiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~ 208 (586)
|=++++.|+||+| ++|.+|+++|-.+..|++|. || .| .| |++.+
T Consensus 8 ~Y~Ng~pHlGH~~st~~~AD~~~RY~~~~G~~v~---f~-----------cG-----------TD----EHG~k------ 52 (573)
T TIGR00398 8 PYANGKPHLGHAYSTTILADVYARYKRLRGYEVL---FV-----------CG-----------TD----EHGTK------ 52 (573)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE---EE-----------EC-----------CC----CCCCH------
T ss_conf 6678711210366777899999999852897478---98-----------51-----------34----46878------
Q ss_pred HHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 127888887576413430237-9999999789988754555887087521000158873010457999999999749851
Q gi|254780285|r 209 VGKELADKYSSELLNFPEEKW-LPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVY 287 (586)
Q Consensus 209 ~~~e~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~ 287 (586)
+... ... .. -. ... -++...+.+++.++.|||.||.|..-.+-. ....+.++..+|.++|++|
T Consensus 53 ----I~~~-A~~-~g----~tqP~~----~vd~~~~~f~~~~~~lnI~fD~F~RTTd~~--H~~~v~~~f~~L~~nGyIY 116 (573)
T TIGR00398 53 ----IELK-AEQ-EG----LTQPKE----LVDKYHEEFKKLWKWLNISFDRFIRTTDEE--HKEIVQKIFQKLLENGYIY 116 (573)
T ss_pred ----HHHH-HHH-CC----CCCHHH----HHHHHHHHHHHHHHHHCCCCCCCCCCCCHH--HHHHHHHHHHHHHHCCCCC
T ss_conf ----8886-987-08----996489----999999999999987284567654676888--8999999999987537741
Q ss_pred CCCC----CCC--------------CCCCCCCCC--------------------CCCCC---------------EEEEHH
Q ss_conf 1342----675--------------556542000--------------------24781---------------565101
Q gi|254780285|r 288 EGIL----PPP--------------KSKTTQKCD--------------------MDRKQ---------------LLFRST 314 (586)
Q Consensus 288 e~~~----~~~--------------~~~~~~~~~--------------------~~~~~---------------~~~~~~ 314 (586)
++.. +.. +...+..+. +..-. .+++.+
T Consensus 117 ~~~~~g~YC~~c~~Fl~dr~~~~~yv~g~CP~c~~~~~~gd~c~~Cg~~leP~~Li~P~c~~~~~~~~~~~~~hyFf~L~ 196 (573)
T TIGR00398 117 EKEIKGLYCPECESFLPDRKLVDDYVEGTCPKCGSEDARGDHCEVCGRHLEPFELINPRCVICKNKPELRDSEHYFFRLS 196 (573)
T ss_pred HHCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCEEEECCEEEEECCCCCCCCCH
T ss_conf 10035323475665362232001334674886887777787755465536850011870255488002513545223536
Q ss_pred HCCCCC-----------------CCCC-C--CCCCCH-HHHHHHHHHHHHHHH--C--CCCCCCCCCCCCHHHHHHHHH-
Q ss_conf 102222-----------------2221-0--246521-356888999999752--2--555433367776136899999-
Q gi|254780285|r 315 MVGDDV-----------------DRPL-L--KSDGSY-TYFAADLAYFKCKYE--R--GFDNMIYVMGSDHSGYVKRLE- 368 (586)
Q Consensus 315 ~~g~~~-----------------d~vl-~--rsDGt~-~Y~t~DiA~~~~k~e--~--~~d~~iyVv~~~Q~~h~~~v~- 368 (586)
.+-+.. ..++ . =.+|-- +=+|||+.+.+|=+. . ..+++||||-..=-+|.-.+.
T Consensus 197 ~~~~~l~~~~~~~~~~~~~~~~~~n~~~~~~~~~GL~D~~ItR~~~~lkWG~pvP~~~~p~~~~YVW~DAl~gYiss~~~ 276 (573)
T TIGR00398 197 AFEKELEEWIKKNPESKSPASNVKNVAKQNWIKGGLKDLAITRDLVDLKWGIPVPNDGAPNKVVYVWFDALIGYISSLKA 276 (573)
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 88899999861488424218999999889985068743011036441211531789898796799872034569999752
Q ss_pred -----------------------------------------HHHHHHC--CCCCCCEEEECCHHHCCCCCCCCCCCCCCC
Q ss_conf -----------------------------------------9999722--663451153110110122110000012233
Q gi|254780285|r 369 -----------------------------------------AVAAAVS--EKKAQINVLLCELVRLYRDGMPIKMSKRAG 405 (586)
Q Consensus 369 -----------------------------------------~~~~~lg--~~~~~~~~~~~~~v~l~~dg~~~kmstR~G 405 (586)
+.+.++| ++-++ .++..|++.. +|. |||+-+|
T Consensus 277 ~~~~~~~~~~~~~~W~~~~~~~~~~HfIGKDI~~FH~iyWPa~L~~~~eN~~lP~-q~~~hGyl~~--eG~--KMSKS~G 351 (573)
T TIGR00398 277 LGIEKGLTEDWKKWWNNNSEDAELIHFIGKDIVRFHTIYWPAMLMGLGENLPLPT-QVFAHGYLTV--EGQ--KMSKSLG 351 (573)
T ss_pred CCCCCCCCHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHH-HHEEEEEEEE--CCE--EECCCCC
T ss_conf 1335687578998626888650278884241202033344588851121002121-3243016884--784--4323247
Q ss_pred CHHHHHH-HHHH-HHHHHHHHHHHHH-CCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHHH-HHCCC
Q ss_conf 0245677-7776-3211234555420-0012333447776532-------024436788888888999987533-20024
Q gi|254780285|r 406 DFITLRH-VVDE-VGSDSVRFMMLWR-KNSELLDFDFCKVKEQ-------SKENPVFYVQYAYARCRSIFRQAK-DIFPD 474 (586)
Q Consensus 406 ~~v~l~d-ll~e-vg~~aiky~~L~~-~~~~~~~Fd~d~~l~~-------~~~nt~~YiqYa~aR~~SIlrKa~-~~~~~ 474 (586)
++|...| +++. .|.+.+||++++. ...+|.+|+|+....- .=||-+ -|+++-.+|.- ...+.
T Consensus 352 ~vv~~~~~~~~~~~g~D~lRYYl~~~~~~~~D~~F~~~~f~~r~N~~L~n~lGNl~-------nR~~~f~~k~f~g~~~~ 424 (573)
T TIGR00398 352 NVVDPEDDLLARGYGADILRYYLLKEVPLGKDGDFSWEDFVERVNADLANDLGNLL-------NRTLGFIKKYFNGVLPS 424 (573)
T ss_pred CEECHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCCCCC
T ss_conf 53232178764478805788899864243447656889999997688776555899-------99999998873562110
Q ss_pred CCCCCCC-CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCH
Q ss_conf 6832234-223552114998999999998421899999998528127999999999988999870686666654357878
Q gi|254780285|r 475 LDFDLFP-RNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNR 553 (586)
Q Consensus 475 ~~~~~~~-~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~ 553 (586)
.+..... ...-..+....+.-.+|+..+..--+.+..+.+..+=+.-+.-+..|+..=|+|-++.. |=. +..++.
T Consensus 425 ~~~~nfqfqeifqneP~l~~~~~~l~~~~~~~~~~~~~~~~~~~f~~Al~~~~~L~~~gNkyi~~~~--PW~--l~k~~~ 500 (573)
T TIGR00398 425 VDETNFQFQEIFQNEPKLTEEDKELLKKINETLEQIDKALESFEFRKALEEILKLADRGNKYIDDNE--PWE--LAKQSE 500 (573)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCE--EECCCH
T ss_conf 1012345666650376522356689999999999999988620389999999999998614765238--871--325706
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999999987315
Q gi|254780285|r 554 KLTMMRLQLVHAVASIINSGLNII 577 (586)
Q Consensus 554 ~~~~~RL~L~~a~~~vL~~~L~LL 577 (586)
..+ .=+++|.....+++.+..||
T Consensus 501 ~~~-~l~~~~~~~~e~~~~l~~Ll 523 (573)
T TIGR00398 501 KLK-ELLAVCSLVAELIRVLSILL 523 (573)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHH
T ss_conf 799-99999999999999999984
No 22
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=99.65 E-value=6.3e-15 Score=123.66 Aligned_cols=266 Identities=23% Similarity=0.246 Sum_probs=141.9
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 55410002234432244117777785689999999985066641020147753145556789875322210245000660
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPE 198 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e 198 (586)
.+.+|-+==|.|=+=...||||+|++|.+|+|+|.++..|++|.-..-++|-|-++..-+.. +..
T Consensus 6 ~~~~v~~YicgPt~Y~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~------~g~--------- 70 (301)
T pfam01406 6 HQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQ------QGE--------- 70 (301)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH------HCC---------
T ss_conf 79937899789906899752233689999999999997499469996778631799999998------098---------
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCEECHHHHHHCCHHHHHHHH
Q ss_conf 1102410000127888887576413430237999999978998875455588708752-100015887301045799999
Q gi|254780285|r 199 GYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQH-DIFISEDDFHRGDPSPIRDII 277 (586)
Q Consensus 199 ~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~f-D~~~~Es~~~~~~~~~i~~~i 277 (586)
..+++.+ ...+.+++.++.|||.. |.+..-++. ...+.+++
T Consensus 71 ----------~p~e~~d------------------------~~~~~F~~~~~~L~I~~~d~~~rtTeh----i~~v~~~i 112 (301)
T pfam01406 71 ----------SFRELAA------------------------RFITAYTKDMDALNVLPPDLEPRVTEH----IDEIIEFI 112 (301)
T ss_pred ----------CHHHHHH------------------------HHHHHHHHHHHHHCCCCCCCCCCCCCC----HHHHHHHH
T ss_conf ----------6537999------------------------999999988998498289868775435----79999999
Q ss_pred HHHHHCCCCCCCCCCC-----CCCCCCCCCC------CCCCCEEEEHHHCCCCCCCCCCC--CCCCHHHHHH--------
Q ss_conf 9999749851134267-----5556542000------24781565101102222222102--4652135688--------
Q gi|254780285|r 278 DNLARQGYVYEGILPP-----PKSKTTQKCD------MDRKQLLFRSTMVGDDVDRPLLK--SDGSYTYFAA-------- 336 (586)
Q Consensus 278 ~~l~~~g~~~e~~~~~-----~~~~~~~~~~------~~~~~~~~~~~~~g~~~d~vl~r--sDGt~~Y~t~-------- 336 (586)
++|.++|.+|++.... .+......+. ...+.............|.+|-| .+|-+.+.+.
T Consensus 113 ~~L~~kG~~Y~~~~~~~Yf~~~~~~~yg~l~~~~~~~~~~~~~~~~~~~k~~~~df~Lwk~~~~~~~~~~~pwg~~~PgW 192 (301)
T pfam01406 113 ERLIKKGYAYVSDNGDVYFDVSSFPDYGKLSGQNLEQLEAGARGEVGEGKRDPLDFALWKASKEGEPSWDSPWGKGRPGW 192 (301)
T ss_pred HHHHHCCCEEECCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997797687269988996667465440464357777525776644332580353321145667877557777898975
Q ss_pred --HHHHH-HHHHHCCCCCCCCCCCCCHH-HHHHHHHHHHHHHC-CCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf --89999-99752255543336777613-68999999999722-663451153110110122110000012233024567
Q gi|254780285|r 337 --DLAYF-KCKYERGFDNMIYVMGSDHS-GYVKRLEAVAAAVS-EKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLR 411 (586)
Q Consensus 337 --DiA~~-~~k~e~~~d~~iyVv~~~Q~-~h~~~v~~~~~~lg-~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~ 411 (586)
+.++. ..-+...+| |-..|.|.. .|-.--.+.+.+++ .+.++ ..++.|++.+ +|+ |||+..||+|++.
T Consensus 193 hie~~~~~~~~~g~~~D--iH~~G~Di~~pH~~~~~A~~~a~~~~~~~~-~~~h~G~l~~--~G~--KMSKSlGNvv~~~ 265 (301)
T pfam01406 193 HIECSAMARKYLGSQID--IHGGGVDLKFPHHENEIAQSEAAFDQQLAK-YWLHNGHLMI--EGE--KMSKSLGNFLTIR 265 (301)
T ss_pred CEEEEHHHHHHCCCCCC--EECCCEEECCCCCHHHHHHHHHHHCCCCCE-EEEEEEEEEE--CCE--ECCCCCCCCCCHH
T ss_conf 46650677874189873--302765101355241999999851999514-9998527987--883--8666478737799
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 777763211234555420001233344777653
Q gi|254780285|r 412 HVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKE 444 (586)
Q Consensus 412 dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~ 444 (586)
||+++.|.+++||++|+..-.++.+|+++.+..
T Consensus 266 dl~~~~g~d~~Ryfll~~~y~~~~~fs~~~l~~ 298 (301)
T pfam01406 266 DVLKRYDPRILRYFLLSVHYRSPLDFSEELLEQ 298 (301)
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 998768999999999846589987879999997
No 23
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=1.3e-11 Score=100.44 Aligned_cols=171 Identities=18% Similarity=0.191 Sum_probs=115.1
Q ss_pred CEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Q ss_conf 1153110110122110000012233024567777763211234555420-001233344777653202443678888888
Q gi|254780285|r 381 INVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR-KNSELLDFDFCKVKEQSKENPVFYVQYAYA 459 (586)
Q Consensus 381 ~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~-~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~a 459 (586)
..+...|+|. .++|. |||+-+||+|.-.|++++-|.+|+||...+. ++..++.||++++.. .-|-+- -.+..+
T Consensus 510 k~V~ihGLVr-De~G~--KMSKS~GNvIDP~d~I~~yGaDAlRf~la~~~~~G~Di~~~~~~~~~--~rnF~n-KlWNa~ 583 (877)
T COG0525 510 KDVYIHGLVR-DEQGR--KMSKSKGNVIDPLDVIDKYGADALRFTLASLASPGRDINFDEKRVEG--YRNFLN-KLWNAT 583 (877)
T ss_pred CEEEEEEEEE-CCCCC--CCCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHH--HHHHHH-HHHHHH
T ss_conf 2789811678-68888--87555788589799998848589999999536888665768899888--999999-987499
Q ss_pred HHHHHHH-HHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHH
Q ss_conf 8999987-533200246832234223552114998999999998421899999998528127999999999-98899987
Q gi|254780285|r 460 RCRSIFR-QAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLA-SVFHGHWS 537 (586)
Q Consensus 460 R~~SIlr-Ka~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La-~~Fn~fY~ 537 (586)
|-...-. +.+ ...... ...+...+-++-.+.+.-..+..+..+++=...++-+|+.. ..|-.+|-
T Consensus 584 Rfv~~~~~~~~-------~~~~~~------~~~~~~drWIls~l~~~v~~v~~~ld~y~f~~a~~~ly~F~W~~fcD~Yl 650 (877)
T COG0525 584 RFVLMNLDDLG-------PDDLDL------LALSLADRWILSRLNETVKEVTEALDNYRFDEAARALYEFIWNDFCDWYL 650 (877)
T ss_pred HHHHHCCCCCC-------CCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99985254457-------654332------22354889999999999999999998623788999999996998989999
Q ss_pred HCCCCCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 068666665-435787899999999999999999998731587
Q gi|254780285|r 538 HGRENPRLR-FVQANNRKLTMMRLQLVHAVASIINSGLNIIGV 579 (586)
Q Consensus 538 ~~~~~~~~~-v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI 579 (586)
.- .| .+..++.+ +.........||.+.|.||--
T Consensus 651 El-----~K~~l~~~~~~----~~~a~~tL~~vl~~~lrLLhP 684 (877)
T COG0525 651 EL-----AKPRLYGGEEE----KRAARATLYYVLDTLLRLLHP 684 (877)
T ss_pred HH-----HHHHHCCCHHH----HHHHHHHHHHHHHHHHHHHCC
T ss_conf 98-----21440285777----899999999999999998488
No 24
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=99.63 E-value=1.8e-12 Score=106.41 Aligned_cols=173 Identities=19% Similarity=0.254 Sum_probs=108.2
Q ss_pred EEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 15311011012211000001223302456777776321123455542-00012333447776532024436788888888
Q gi|254780285|r 382 NVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLW-RKNSELLDFDFCKVKEQSKENPVFYVQYAYAR 460 (586)
Q Consensus 382 ~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~-~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR 460 (586)
.++..|+| +.++|+ |||+.+||+|...|++++-|.+|+||++++ ..+..++.||.+.+.. .-+-. --++.-+|
T Consensus 508 ~v~~hG~v-~D~~G~--KMSKS~GNvidP~~vi~~yGaDalR~~l~~~~~~g~di~~~~~~v~~--~r~f~-nKlwN~~r 581 (877)
T PRK05729 508 DVYIHGLV-RDEQGR--KMSKSKGNVIDPLDLIDKYGADALRFTLAALASPGRDIRFDEERVEG--YRNFA-NKLWNASR 581 (877)
T ss_pred HCCCCCEE-ECCCCC--CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHH--HHHHH-HHHHHHHH
T ss_conf 02004437-889887--78787889899899998719199999999707767660006899999--99999-99999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHC
Q ss_conf 999987533200246832234223552114998999999998421899999998528127999999999-9889998706
Q gi|254780285|r 461 CRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLA-SVFHGHWSHG 539 (586)
Q Consensus 461 ~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La-~~Fn~fY~~~ 539 (586)
-... ..... +.+ ........+...+-++..|..+-..+.++.+++..+..++-+|++. ..|.+||-..
T Consensus 582 f~~~--~~~~~----~~~-----~~~~~~~~~~~D~WIlskL~~~i~~v~~~~~~y~f~~a~~~ly~F~w~d~cdwYlE~ 650 (877)
T PRK05729 582 FVLM--NLEGQ----DPG-----FLPDEAELSLADRWILSRLNRTVAEVTEALDKYRFDEAAQALYEFIWNEFCDWYLEL 650 (877)
T ss_pred HHHH--HCCCC----CCC-----CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9997--24656----644-----456621067879999999999999998750002099999999998467557899999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 866666543578789999999999999999999873158
Q gi|254780285|r 540 RENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIG 578 (586)
Q Consensus 540 ~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLG 578 (586)
..+ .+..++... |..-......+|...|.||-
T Consensus 651 -~K~---rl~~~~~~~---~~~~~~~L~~vL~~~L~lLh 682 (877)
T PRK05729 651 -AKP---VLNGGDEAA---KRGTRATLAYVLEEILRLLH 682 (877)
T ss_pred -HHH---HHCCCCHHH---HHHHHHHHHHHHHHHHHHHC
T ss_conf -799---770887788---99999999999999999856
No 25
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=1.1e-11 Score=100.91 Aligned_cols=351 Identities=19% Similarity=0.224 Sum_probs=200.9
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
.++++|==.=|=|++++|+||+++++..|+++|-+|..|++|.=..--+..|+.+..-+.. ++.
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~------~g~---------- 67 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK------EGI---------- 67 (558)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHH------CCC----------
T ss_conf 8738995589889998641367888789999999982697589995147877788999998------599----------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHH
Q ss_conf 10241000012788888757641343023799999997899887545558870875210001588730104579999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDN 279 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~ 279 (586)
..+++. +..-+.++++++.|+|.||.|..-.+-. ....+.++..+
T Consensus 68 ---------tP~el~------------------------d~~~~~~~~~~~~l~IsfD~F~rTt~~~--h~~~vq~~f~~ 112 (558)
T COG0143 68 ---------TPQELV------------------------DKNHEEFKELFKALNISFDNFIRTTSPE--HKELVQEFFLK 112 (558)
T ss_pred ---------CHHHHH------------------------HHHHHHHHHHHHHHCCCCCEECCCCCHH--HHHHHHHHHHH
T ss_conf ---------989999------------------------9999999999998098543001689777--99999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCC----------------------------------------CCC--------CCCEEE
Q ss_conf 99749851134267555654200----------------------------------------024--------781565
Q gi|254780285|r 280 LARQGYVYEGILPPPKSKTTQKC----------------------------------------DMD--------RKQLLF 311 (586)
Q Consensus 280 l~~~g~~~e~~~~~~~~~~~~~~----------------------------------------~~~--------~~~~~~ 311 (586)
|.++|.+|++.....-+...... ... ....+|
T Consensus 113 L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~a~GD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf 192 (558)
T COG0143 113 LYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFF 192 (558)
T ss_pred HHHCCCEECCCEEEEECCCCCCCCCCHHEECCCCCCCCCCCCCCHHHHCCCCCCCHHCCCCEEEEECCCCCCCCCEEEEE
T ss_conf 99789873144356473543564562102055898675345764343226757921217981686479764335405998
Q ss_pred EHHHCCCCCCCCCCCCCC---CHHHHH-----------HHHHHHH----HHHH--CCCCCCCCCCCCCHHHHHHHHHHH-
Q ss_conf 101102222222102465---213568-----------8899999----9752--255543336777613689999999-
Q gi|254780285|r 312 RSTMVGDDVDRPLLKSDG---SYTYFA-----------ADLAYFK----CKYE--RGFDNMIYVMGSDHSGYVKRLEAV- 370 (586)
Q Consensus 312 ~~~~~g~~~d~vl~rsDG---t~~Y~t-----------~DiA~~~----~k~e--~~~d~~iyVv~~~Q~~h~~~v~~~- 370 (586)
+.+.+.+.. +-.++++. .+...- +|++-.+ |=+. ...++++|||=..=-+|..-+...
T Consensus 193 ~L~~~~~~L-~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~ 271 (558)
T COG0143 193 RLSKFQDKL-LEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELA 271 (558)
T ss_pred EHHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCHH
T ss_conf 879869999-9999739654588689999999997668664314589887725799998779996344889999954121
Q ss_pred --------------------------------------HHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf --------------------------------------997226634511531101101221100000122330245677
Q gi|254780285|r 371 --------------------------------------AAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRH 412 (586)
Q Consensus 371 --------------------------------------~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~d 412 (586)
+...|.+.+. .++..|++.+ +|. |||+-.|++|..++
T Consensus 272 ~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~-~i~ahg~l~~--~G~--KmSKSrG~~V~~~~ 346 (558)
T COG0143 272 EIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPT-RIFAHGFLTL--EGQ--KMSKSRGNVVDPDE 346 (558)
T ss_pred CCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCC-EEEEEEEEEE--CCC--CCCCCCCCEEEHHH
T ss_conf 058767898637788845999962456743245789999738999887-7984013997--794--12442881871799
Q ss_pred HHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCC
Q ss_conf 7776321123455542000-12333447776532024436788888888999987533-200246832234223552114
Q gi|254780285|r 413 VVDEVGSDSVRFMMLWRKN-SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAK-DIFPDLDFDLFPRNVIPQESE 490 (586)
Q Consensus 413 ll~evg~~aiky~~L~~~~-~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~-~~~~~~~~~~~~~~~~~~~~~ 490 (586)
++++.|++++||++++..+ +++.+|+|+....--...-+-=+.-=-.|+.|-..|.- ...+. .. . ..
T Consensus 347 ~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~fi~k~~~g~vp~--------~~-~--~~ 415 (558)
T COG0143 347 LLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPA--------AG-A--PD 415 (558)
T ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--------CC-C--CC
T ss_conf 9987482385798887377888888899999999989988788899999999997525996886--------54-5--55
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9989999999984218999999985281279999999999889998706
Q gi|254780285|r 491 FDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHG 539 (586)
Q Consensus 491 ~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~ 539 (586)
. +.+.+++..+......+..+.+..+-+.-+.-+.+|+..=|+|-+..
T Consensus 416 ~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~ 463 (558)
T COG0143 416 L-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQ 463 (558)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3-45699999999999999999986259999999999999998876428
No 26
>cd00817 ValRS_core This is the catalytic core domain of valine amino-acyl tRNA synthetases (ValRS) . This enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.60 E-value=4.9e-14 Score=117.41 Aligned_cols=266 Identities=20% Similarity=0.252 Sum_probs=132.0
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf 10002234432244117777785689999999985066641020147753145556789875322210245000660110
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYY 201 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~ 201 (586)
+-+|.=.=|.+|+++||||+++.++.|+++|-.+-.|++|.-..=-+.-|+.+-..+.. ... ..... +.+
T Consensus 2 ~f~itTpipYaNG~~HiGHa~~~i~aDv~aRy~rm~G~~V~f~~G~DeHGlpie~~~ek---~~~----~~~~~-~~~-- 71 (363)
T cd00817 2 PFVIDTPPPNVTGSLHIGHALTNTIQDIIARYKRMKGYNVLWPPGTDHAGIATQVVVEK---KLG----IEGKT-RHD-- 71 (363)
T ss_pred CEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH---HHC----CCCCC-HHH--
T ss_conf 85994899988886135278989999999999981699778878457566899999999---836----05665-000--
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--CEECHHHHHHCCHHHHHHHHHH
Q ss_conf 24100001278888875764134302379999999789988754555887087521--0001588730104579999999
Q gi|254780285|r 202 PGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHD--IFISEDDFHRGDPSPIRDIIDN 279 (586)
Q Consensus 202 ~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD--~~~~Es~~~~~~~~~i~~~i~~ 279 (586)
. ..+...+.+.++ .+...+.+++.+++||+.+| .+...++- .....+.+++.+
T Consensus 72 -------~---------------~~~~f~~~~~~~-~~~~~~~~~~~~~~lg~~~D~~~~~rT~d~--~h~~~vq~~f~~ 126 (363)
T cd00817 72 -------L---------------GREEFLEKCWEW-KEESGGKIREQLKRLGASVDWSREYFTMDP--GLSKAVQEAFVR 126 (363)
T ss_pred -------C---------------CHHHHHHHHHHH-HHHHHHHHHHHHHHHCHHCCCCCCEECCCH--HHHHHHHHHHHH
T ss_conf -------7---------------989999999999-999999999999983301165750343776--799999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHC------------------------------------------C
Q ss_conf 9974985113426755565420002478156510110------------------------------------------2
Q gi|254780285|r 280 LARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMV------------------------------------------G 317 (586)
Q Consensus 280 l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------g 317 (586)
|.++|++|++..... .... .....+.+++.+++ |
T Consensus 127 l~~~G~iY~~~~~v~--~~ve--~~~~~~~f~~~~~~~~~l~~~~~~~~~~~~P~~~~~~~~~~l~~l~Dw~ISR~~~WG 202 (363)
T cd00817 127 LYEKGLIYRANRLVN--WVIE--PLLKPQWFVKVKDLAKAALEAVKEGDIKFVPERMEKRYEDWLENIRDWCISRQLWWG 202 (363)
T ss_pred HHHCCCEECCCCEEC--CEEE--EEECCEEEEECHHHHHHHHHHHHCCCCEEECHHHHHHHHHHHHCCCCCCCCHHCCCC
T ss_conf 998889763682457--3779--987761689877889999999962997785789999999998515765331000136
Q ss_pred CCCCCCCC-CCCCC-HHHHH-------------------------H-------H-----HHHHHHHHH-----CCCCCCC
Q ss_conf 22222210-24652-13568-------------------------8-------8-----999999752-----2555433
Q gi|254780285|r 318 DDVDRPLL-KSDGS-YTYFA-------------------------A-------D-----LAYFKCKYE-----RGFDNMI 353 (586)
Q Consensus 318 ~~~d~vl~-rsDGt-~~Y~t-------------------------~-------D-----iA~~~~k~e-----~~~d~~i 353 (586)
.. .|+. -.+.. ..+.. + | +++..|..+ .-+--.+
T Consensus 203 ~p--iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~dvWfds~~~~~~~~~~~~~~~~~~~~~p~d~ 280 (363)
T cd00817 203 HR--IPAWYCEDCGHWVVAREEEEAVDPAIPEACCPCGSEELEQDTDVLDTWFSSSLWPFSTLGWPEETKDLKKFYPTSL 280 (363)
T ss_pred CC--CCEEECCCCCCEEECCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHCCCCCCCHHHHCCCCCE
T ss_conf 66--6614627898477067336411124320478887211303677653044524772255089743314540787637
Q ss_pred CCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 36777613-6899999999972266345115311011012211000001223302456777776321123455542000
Q gi|254780285|r 354 YVMGSDHS-GYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN 431 (586)
Q Consensus 354 yVv~~~Q~-~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~ 431 (586)
.++|-|+- .|+..+......+..+.+--.++..|++ +..+|+ |||+-+||+|..++++++.|.+++||++++..+
T Consensus 281 ~~~GkDIirfW~~~~~~~~~~l~~~~P~~~v~~HG~v-l~~~G~--KMSKS~GNvv~p~~~l~~yg~D~lRy~l~~~~~ 356 (363)
T cd00817 281 LPTGHDIIFFWVARMIMRGLELTGKLPFKEVYIHGLV-RDEDGR--KMSKSLGNVIDPLDVIDGYGADALRFTLASAAS 356 (363)
T ss_pred EEEEEHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEE-ECCCCC--CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 8762388746999999987662489886566878628-999988--757889986698999987792799999995299
No 27
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.60 E-value=2.7e-12 Score=105.24 Aligned_cols=140 Identities=22% Similarity=0.267 Sum_probs=97.7
Q ss_pred CCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCC------CH-
Q ss_conf 4511531101101221100000122330245677777632112345554200-012333447776532024------43-
Q gi|254780285|r 379 AQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK-NSELLDFDFCKVKEQSKE------NP- 450 (586)
Q Consensus 379 ~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~-~~~~~~Fd~d~~l~~~~~------nt- 450 (586)
+--.++..|+| |.++|+ |||+.+||+|...+++++-|.+|+|+++++.. +..++.|+++.+...... |+
T Consensus 577 Pfk~v~~~G~V-ld~~G~--KMSKS~GNvidP~~vi~~yGADalRl~l~~~~~~~~d~~f~~~~v~e~~r~~~~~lwN~~ 653 (1042)
T PRK06039 577 PYKNVIVHGHV-LDEDGQ--KMSKSLGNYVDPFEVFDKYGADALRWYLLSSSVPWEDLRFSEDGIREVVRKFLLPLWNVY 653 (1042)
T ss_pred CCCEEEEEEEE-ECCCCE--ECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 00258995038-736864--803367886897999886082799999996677555615779999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 67888888889999875332002468322342235521149989999999984218999999985281279999999999
Q gi|254780285|r 451 VFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLAS 530 (586)
Q Consensus 451 ~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~ 530 (586)
-++++|+- +. +++.... .. .....++..+-++..|..+-..+.++.+.+..|..++-+++...
T Consensus 654 rF~~~y~~------ld-------~f~~~~~---~~-~~~~~~~~DrWils~l~~~i~~v~~~~~~y~~~~a~~~l~~Fi~ 716 (1042)
T PRK06039 654 SFFALYAN------LD-------GFDPNEA---EE-ALDSRNELDRWILSRLNSLVKEVTEALDNYDITKAARAIRDFVD 716 (1042)
T ss_pred HHHHHHHH------CC-------CCCCCCC---CC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 99987421------02-------7995435---55-63216687899999999999999999972459999999999998
Q ss_pred HHHHHHHH
Q ss_conf 88999870
Q gi|254780285|r 531 VFHGHWSH 538 (586)
Q Consensus 531 ~Fn~fY~~ 538 (586)
.+++||-.
T Consensus 717 dLs~wYi~ 724 (1042)
T PRK06039 717 DLSNWYIR 724 (1042)
T ss_pred HHHHHHHH
T ss_conf 87799999
No 28
>cd00812 LeuRS_core This is the catalytic core domain of leucyl tRNA synthetase (LeuRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.60 E-value=9.6e-14 Score=115.37 Aligned_cols=277 Identities=22% Similarity=0.315 Sum_probs=138.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCC
Q ss_conf 02234432244117777785689999999985066641020147753145556789875322210245000660110241
Q gi|254780285|r 125 IEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGV 204 (586)
Q Consensus 125 VE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~ 204 (586)
|--.=|++|+++|+||+++.++.|.++|-+|..|++|.=..=-+.-|+.+...+... . .......+ .+...
T Consensus 4 ITta~PY~NG~~HiGH~~~~i~aDi~~Ry~Rm~G~~V~~~~G~DeHG~pI~~~A~~~--g------~~~~~~~~-~~~~~ 74 (376)
T cd00812 4 ILVMFPYPSGRLHVGHVRTYTIGDIIARYKRMKGYNVLFPMGFDAFGLPAENAADKI--G------REDEDTIE-PYRDV 74 (376)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH--C------CCHHHHHH-HHHHC
T ss_conf 985898889745468869899999999999955997046884565678999999996--8------74776530-11110
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECH-HHHHHCCHHHHHHHHHHHHHC
Q ss_conf 0000127888887576413430237999999978998875455588708752100015-887301045799999999974
Q gi|254780285|r 205 YLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISE-DDFHRGDPSPIRDIIDNLARQ 283 (586)
Q Consensus 205 y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~E-s~~~~~~~~~i~~~i~~l~~~ 283 (586)
. ... .......+ . +++ ++...+.+++++++||+.+| |..+ +.........+.+++.+|.++
T Consensus 75 ~-------~~~---~~~~~~~~---p---~~~-~~~~~~~~~~~~~~lg~~~D-~~~~~~T~~~~~~~~vq~~f~~L~~~ 136 (376)
T cd00812 75 G-------VPD---EEIEKFAD---P---KYW-TEYFIAKMKEQLKRMGFSID-WRREFTTTDPEYYKFTQWQFLKLKEK 136 (376)
T ss_pred C-------HHH---HHHHCCCC---H---HHH-HHHHHHHHHHHHHHHCCCCC-CCCCEECCCHHHHHHHHHHHHHHHHC
T ss_conf 0-------018---87861279---9---999-99999999999998098737-68664337778999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCC--------------CCCCEEEEHHH------CCCCCCCCC--CCCCCCH----------
Q ss_conf 985113426755565420002--------------47815651011------022222221--0246521----------
Q gi|254780285|r 284 GYVYEGILPPPKSKTTQKCDM--------------DRKQLLFRSTM------VGDDVDRPL--LKSDGSY---------- 331 (586)
Q Consensus 284 g~~~e~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~------~g~~~d~vl--~rsDGt~---------- 331 (586)
|++|++.....-+..+..+.. +....+..... ++...+..+ .+.-|+.
T Consensus 137 G~iy~~~~~~~y~~~~~~~f~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dw~is 216 (376)
T cd00812 137 GLIYKGEAPVNWCKLLDQWFLKYSTEWAERLLKDLEGLDTWPEEVKNMQENWIGWLKGWACARRYGLGTVLPWDRDWLIE 216 (376)
T ss_pred CCEEECCCEECCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 98895175553646776057416678899987404204678688999999987302465254111115406555443413
Q ss_pred ------HHHH-------------------------------------HHHHHHHHH----------HHCCCCCCCCCCCC
Q ss_conf ------3568-------------------------------------889999997----------52255543336777
Q gi|254780285|r 332 ------TYFA-------------------------------------ADLAYFKCK----------YERGFDNMIYVMGS 358 (586)
Q Consensus 332 ------~Y~t-------------------------------------~DiA~~~~k----------~e~~~d~~iyVv~~ 358 (586)
.|-. -|+++.-.. ++.-+.--++++|.
T Consensus 217 r~~~~~~~wg~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~w~~~~~~~~~~~~~~~~~~~~~~~~p~d~~~~Gk 296 (376)
T cd00812 217 RLRDSTIYWGYYTPAHHCEKCGPVCPKCGKPAKRETDTMDEFFDSSWYYLRYLDPKNSEAPFDREEFEYWYPVDLYIGGK 296 (376)
T ss_pred CCCCCCCCCCEEEEEEECCCCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCEEEECC
T ss_conf 44456666770021597567864146667555665446886577630146667843344766879998428860688133
Q ss_pred CHH-HHH--HHHH-HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 613-689--9999-9999722663451153110110122110000012233024567777763211234555420001
Q gi|254780285|r 359 DHS-GYV--KRLE-AVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNS 432 (586)
Q Consensus 359 ~Q~-~h~--~~v~-~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~ 432 (586)
|.- .|. -..+ .++-.+|....--.++..|++++ +|+ |||+-+||+|.++|++++-|.+++||++++..+.
T Consensus 297 Dii~fH~~~~~~~~~~l~~~~~~~~p~~v~~hG~l~~--~G~--KMSKS~Gn~v~p~~~l~~yg~D~lR~~Ll~~~p~ 370 (376)
T cd00812 297 EHAVNHLLYSRFNHKALFDEGTKEPPKGLRVQGMVLL--EGE--KMSKSKGNVVTPDEAIKKYGADATRLYLLFAAPP 370 (376)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEC--CCE--ECCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCC
T ss_conf 5420136799999999986467779826687572966--996--6377899884989999885954999999944995
No 29
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=99.56 E-value=3.1e-11 Score=97.76 Aligned_cols=205 Identities=20% Similarity=0.225 Sum_probs=116.4
Q ss_pred CCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 336777613-6899999999972266345115311011012211000001223302456777776321123455542000
Q gi|254780285|r 353 IYVMGSDHS-GYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN 431 (586)
Q Consensus 353 iyVv~~~Q~-~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~ 431 (586)
+|+-|.||. ++|..+....-.+....+--.++..||| +.++|+ |||+.+||+|...+++++-|.+++|+...+.+-
T Consensus 550 ly~eG~Dq~RgWF~s~ll~s~~~~~~~Pfk~v~~hG~v-lD~~G~--KMSKS~GNvidP~~ii~~yGAD~lRlwvas~d~ 626 (910)
T PRK05743 550 LYLEGSDQHRGWFQSSLLTSVATNGKAPYKQVLTHGFT-VDGKGR--KMSKSLGNVIDPQDVIKKYGADILRLWVASTDY 626 (910)
T ss_pred EEECCCCHHHEEHHHHHHHEEEECCCCCEEEEEECCEE-ECCCCC--CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC
T ss_conf 32337652210236622122452178884179861328-989888--888878777998999865494099999872574
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 12333447776532024436788888888999987533200246832234223552114998999999998421899999
Q gi|254780285|r 432 SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIEN 511 (586)
Q Consensus 432 ~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~ 511 (586)
..++.|+.+.+... .+ +|-|+...+|=.-....+++.. ...++ ...+.+.++-++..|..+-..+.+
T Consensus 627 ~~d~~~s~~il~~~-~~--------~yrKi~Nt~rf~l~nl~~f~~~---~~~~~-~~~l~~lD~wiL~~l~~~~~~v~~ 693 (910)
T PRK05743 627 SGDVRISDEILKQV-AE--------SYRRIRNTLRFLLGNLNDFDPA---KDAVP-YEELVELDRWALHRLNELQEEIIE 693 (910)
T ss_pred CCCCCCCHHHHHHH-HH--------HHHHHHHHHHHHHHHHCCCCCC---CCCCC-HHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 34545568999889-99--------9999999999998632168832---24589-244657689999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 998528127999999999-9889998706866666543578789999999999999999999873158
Q gi|254780285|r 512 ATIAQEPYKLAFYLYDLA-SVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIG 578 (586)
Q Consensus 512 a~~~~~P~~l~~Yl~~La-~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLG 578 (586)
+++++.-|..++.+++.+ ..|++||-.- ..+.+- ....+... |.+--.....+|...+.||.
T Consensus 694 ~~~~y~f~~a~~~l~~F~~~dls~~Y~~~-~Kdrly-~~~~~~~~---R~s~q~~L~~vl~~l~~lla 756 (910)
T PRK05743 694 AYENYDFHKVYQALHNFCSVDLSSFYLDI-IKDRLY-TDKADSLA---RRSAQTALYHILEALVRWLA 756 (910)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-CCCCCHHH---HHHHHHHHHHHHHHHHHHHH
T ss_conf 98635588999999988575687999876-124441-47898499---99999999999999999998
No 30
>cd00818 IleRS_core This is the catalytic core domain of isoleucine amino-acyl tRNA synthetases (IleRS) . This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=99.55 E-value=2.6e-13 Score=112.36 Aligned_cols=53 Identities=21% Similarity=0.232 Sum_probs=43.8
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 00223443224411777778568999999998506664102014775314555
Q gi|254780285|r 124 NIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINT 176 (586)
Q Consensus 124 vVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~ 176 (586)
.|.=.=|.+|+++||||++++++.|+++|-.|..|++|.-..=-+--|+.+..
T Consensus 4 ~~~~~pPYaNg~pHiGHa~~~i~aDv~aRy~Rl~G~~v~f~~GtDeHG~pIe~ 56 (339)
T cd00818 4 VFHDGPPYANGLPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHGLPIEL 56 (339)
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 99589988578734558899999999999998069988778851440399999
No 31
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=99.54 E-value=9.1e-11 Score=94.50 Aligned_cols=247 Identities=23% Similarity=0.350 Sum_probs=141.9
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
-.+.+|-+=-+.|-+=-..||||+|+.+.-|.|.|+|++.||+|.-.-=|-|. |
T Consensus 19 ~~~~~v~~Y~CGPTVYd~~HiG~~r~~v~~D~l~R~l~~~g~~v~~v~NiTDi----------------------d---- 72 (460)
T PRK00260 19 LDPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYRGYKVTYVRNITDI----------------------D---- 72 (460)
T ss_pred CCCCEEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC----------------------H----
T ss_conf 89995889967984888732000308999999999999649934999823754----------------------1----
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCEECHHHHHHCCHHHHHHH
Q ss_conf 01102410000127888887576413430237999999978998875455588708752-10001588730104579999
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQH-DIFISEDDFHRGDPSPIRDI 276 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~f-D~~~~Es~~~~~~~~~i~~~ 276 (586)
+.+.+...++ . .. ++++ .+...+.+.++++.|||.. |.+..=+++. ..+-+.
T Consensus 73 -------------DKii~~a~~~----~-~~----~~~~-~~~~~~~f~~d~~~L~i~~p~~~~r~t~~i----~~~i~~ 125 (460)
T PRK00260 73 -------------DKIIKRANEE----G-ES----IKEL-TERYIAAFHEDMDALGVLRPDIEPRATEHI----PEIIEL 125 (460)
T ss_pred -------------HHHHHHHHHH----C-CC----HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHH
T ss_conf -------------9999999981----9-69----9999-999999999999994899985224301479----999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHC---CC----CCCCCCC--CCCCCHHH--HHHHHHHHHHHH
Q ss_conf 9999974985113426755565420002478156510110---22----2222210--24652135--688899999975
Q gi|254780285|r 277 IDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMV---GD----DVDRPLL--KSDGSYTY--FAADLAYFKCKY 345 (586)
Q Consensus 277 i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~----~~d~vl~--rsDGt~~Y--~t~DiA~~~~k~ 345 (586)
+++|.++|++|+.. +.+.|+...+ |. +.+.... |-+..+ + -.+| .++||.
T Consensus 126 i~~l~~~g~aY~~~----------------~~vyFdv~~~~~YG~Ls~~~~~~~~~g~rv~~~~-~K~~p~D--FaLWK~ 186 (460)
T PRK00260 126 IERLIEKGHAYEAD----------------GDVYFDVRKFPDYGKLSGRNLDDLQAGARVEVAE-EKRDPLD--FVLWKA 186 (460)
T ss_pred HHHHHHCCCEEEEC----------------CEEEECCCCCCCHHHCCCCCCHHHHCCCCCCCCC-CCCCCCC--HHHCCC
T ss_conf 99998579528847----------------8799635555330300565302121156567663-4478553--221278
Q ss_pred HCCCC---------------------------CCCCC--CCC-----CHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 22555---------------------------43336--777-----613689999999997226634511531101101
Q gi|254780285|r 346 ERGFD---------------------------NMIYV--MGS-----DHSGYVKRLEAVAAAVSEKKAQINVLLCELVRL 391 (586)
Q Consensus 346 e~~~d---------------------------~~iyV--v~~-----~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l 391 (586)
.+.-+ .-+++ -|. -|.....|..++- |.+.+++ -++.|++++
T Consensus 187 ~~~ge~~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIH~GG~DL~FPHHENEiAQs~a~~---~~~~a~y-W~H~g~l~i 262 (460)
T PRK00260 187 AKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAAT---GKPFANY-WMHNGFVTV 262 (460)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHH---CCCCCCE-EEEEEEEEE
T ss_conf 888887776988887987422637999987599754762452677899610999998864---8986524-565105763
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 22110000012233024567777763211234555420001233344777653
Q gi|254780285|r 392 YRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKE 444 (586)
Q Consensus 392 ~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~ 444 (586)
+|+ |||+..||++++.|++++.+..++||++|+..-.+.++|+++.+..
T Consensus 263 --~g~--KMSKSlgN~iti~dll~~y~~~~lR~~lLs~hYR~pl~fs~e~L~~ 311 (460)
T PRK00260 263 --NGE--KMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEE 311 (460)
T ss_pred --CCE--EEECCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf --671--7503578700199999870779999999854689966779999999
No 32
>PRK00574 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.46 E-value=2.9e-12 Score=105.02 Aligned_cols=280 Identities=21% Similarity=0.250 Sum_probs=152.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHH------HHHHHHHHHHHHHHHCCCCCCCCCHHHCC
Q ss_conf 443224411777778568999999998506664102014775314------55567898753222102450006601102
Q gi|254780285|r 129 SANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQ------INTLALSVFWRYQQALYNNDSDLPEGYYP 202 (586)
Q Consensus 129 SpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q------~~~li~~~~~~~~~~~~~~~~~~~e~~~~ 202 (586)
-|-|||.||||++|.|++-.-+||=. -|-=+.| |.|+-.. ...++-++.|...++ ++.+. .++-.
T Consensus 10 APSPTG~lHiG~~rtAl~n~l~Ar~~--~G~fiLR---IEDTD~~R~~~~~~~~I~~~L~wlgl~~--DE~p~--~~g~~ 80 (489)
T PRK00574 10 APSPTGYLHIGNARTALFNYLFAKHN--NGKFILR---IEDTDQERNVEGGEESQLENLKWLGIDW--DEGPD--KGGEY 80 (489)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCCC--CCCCC--CCCCC
T ss_conf 98999842247899999999999964--9989998---6778987787699999999999879888--77877--78888
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 41000012788888757641343023799999997899887545558870875210001588730104579999999997
Q gi|254780285|r 203 GVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLAR 282 (586)
Q Consensus 203 ~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~ 282 (586)
|.|......+.+.++.+++++..-. ..-++...-++..++.-.+.|..+ .|.+.+ ...-.+-++...+
T Consensus 81 gPY~QS~R~~~Y~~~a~~Ll~~G~A-----Y~Cfct~eel~~~r~~~~~~g~~~-~Y~~~c------r~l~~~e~~~~~~ 148 (489)
T PRK00574 81 GPYRQSERLDIYQKYADQLLEEGKA-----YYCFCTEEELEAEREKQEARGETP-KYDGKC------LGLTKEEIEEYEA 148 (489)
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCC-----EECCCCHHHHHHHHHHHHHCCCCC-CCCCCC------CCCCHHHHHHHHH
T ss_conf 8835126899999999999974997-----452577999999899997569998-787232------3389888998985
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC-C-CCCCCH
Q ss_conf 49851134267555654200024781565101102222222102465213568889999997522555433-3-677761
Q gi|254780285|r 283 QGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMI-Y-VMGSDH 360 (586)
Q Consensus 283 ~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~i-y-Vv~~~Q 360 (586)
+|..|.-.+..|.......-|.-.|.+.+.+...+ |.||+||||++||.-. ... + ..+.=| - |=|.||
T Consensus 149 ~g~~~viRfk~p~~~~~~~~D~v~G~i~~~~~~ld---D~Vi~rsDG~PtYhla---~VV---D-D~~M~ITHVIRGedh 218 (489)
T PRK00574 149 EGIPPVIRFKVPENGTYSFDDIVKGKISFDSSTIG---DFVIVKSDGFPTYNFA---VVV---D-DHLMEITHVIRGEDH 218 (489)
T ss_pred CCCCCEEEEECCCCCEEEEEEECCCCCCCCCCCCC---CEEEEECCCCEEEEEC---CCC---C-CCCCCCCEEECCHHH
T ss_conf 69992376536998718986423676465756678---7688814898056412---114---7-512587643035215
Q ss_pred H-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHH-HHHHHHHH-------------HHH------
Q ss_conf 3-68999999999722663451153110110122110000012233024-56777776-------------321------
Q gi|254780285|r 361 S-GYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFI-TLRHVVDE-------------VGS------ 419 (586)
Q Consensus 361 ~-~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v-~l~dll~e-------------vg~------ 419 (586)
- ...+|+ .+.++||++.+.+.|+.. + +.+||+ |+|+|.|.+. .+.+.-++ +|-
T Consensus 219 lsnTpkqi-~ly~Alg~~~P~faHlPL--i-~~~dg~--KLSKR~g~~~~sv~~yre~GylPeAl~NyLa~LGWs~~~~~ 292 (489)
T PRK00574 219 ISNTPKQI-MIYEAFGWEPPKFGHMPL--I-LNEDRK--KLSKRDGATLQFIEDYRELGYLPEAIFNFIALLGWSPEGEE 292 (489)
T ss_pred HHHHHHHH-HHHHHHCCCCCEEEEEEE--E-ECCCCC--CCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCC
T ss_conf 77639999-999982899974785111--3-789998--16666797015799999879866699999998079999874
Q ss_pred ------HHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf ------12345554200012333447776532
Q gi|254780285|r 420 ------DSVRFMMLWRKNSELLDFDFCKVKEQ 445 (586)
Q Consensus 420 ------~aiky~~L~~~~~~~~~Fd~d~~l~~ 445 (586)
..+.-|+|+.=..+.-.||++++..+
T Consensus 293 Eifsl~eli~~FdL~~i~ks~A~FD~~KL~wl 324 (489)
T PRK00574 293 EIFSLEELIKLFDLKRLSKSPAIFDQKKLKWM 324 (489)
T ss_pred CCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 65899999864582568788883799999999
No 33
>pfam00133 tRNA-synt_1 tRNA synthetases class I (I, L, M and V). Other tRNA synthetase sub-families are too dissimilar to be included.
Probab=99.43 E-value=2e-11 Score=99.16 Aligned_cols=134 Identities=16% Similarity=0.255 Sum_probs=84.5
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
.++-.|-..=|+|+++|||||+||-+|+|+++|-.+-.|++|.---=.+-.|+.+-..+.. .... .....+
T Consensus 22 k~kf~i~~~pPY~nG~lH~GH~~~~t~~D~~aRy~rm~G~~Vl~p~GwD~~GlPiE~~vek---~~~~----~~~~~~-- 92 (606)
T pfam00133 22 KPSFTIHDGPPNATGLLHIGHALNKTLKDIVIRYKRMQGFDVLWVPGWDHHGLPTEQKVEK---KLGI----KGKKDR-- 92 (606)
T ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH---HHHH----CCCCCH--
T ss_conf 9958997089897885024266878999999999982899779988456143999999999---7421----159983--
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE----ECHHHHHHCCHHHHHH
Q ss_conf 102410000127888887576413430237999999978998875455588708752100----0158873010457999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIF----ISEDDFHRGDPSPIRD 275 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~----~~Es~~~~~~~~~i~~ 275 (586)
. +...++..+.++++ +....+.+++.+++||+.+|-- ...-.| ...+..
T Consensus 93 -------~---------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lG~~~DW~r~~~T~dp~y----~~~~~w 145 (606)
T pfam00133 93 -------H---------------KLGREKFREKCREW-KMEYADEIRSQFKRLGVSGDWDREYFTLDPGL----EAAVWR 145 (606)
T ss_pred -------H---------------HCCHHHHHHHHHHH-HHHHHHHHHHHHHHHCCEEECCCCCCCCCHHH----HHHHHH
T ss_conf -------6---------------57999999999999-99999999999998291264588725278125----499999
Q ss_pred HHHHHHHCCCCCCC
Q ss_conf 99999974985113
Q gi|254780285|r 276 IIDNLARQGYVYEG 289 (586)
Q Consensus 276 ~i~~l~~~g~~~e~ 289 (586)
.+.+|.++|++|.+
T Consensus 146 ~F~~L~~~Gliyr~ 159 (606)
T pfam00133 146 VFVRLHDKGLIYRG 159 (606)
T ss_pred HHHHHHHCCCCEEE
T ss_conf 99999977981775
No 34
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=99.40 E-value=2e-12 Score=106.06 Aligned_cols=126 Identities=18% Similarity=0.254 Sum_probs=71.6
Q ss_pred CCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCHHH-HHHHHHHHHHHHCCCCC
Q ss_conf 0247815651011022222221024652135688899999975225554333--67776136-89999999997226634
Q gi|254780285|r 303 DMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIY--VMGSDHSG-YVKRLEAVAAAVSEKKA 379 (586)
Q Consensus 303 ~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iy--Vv~~~Q~~-h~~~v~~~~~~lg~~~~ 379 (586)
+.-.|.+.+.....+ |.||+||||++||.-. ... + ..+.=|. |=|.||-. ..+|+ .+.+.+|++.+
T Consensus 167 D~v~G~i~~~~~~~~---D~Vi~rsDG~ptY~lA---~VV---D-D~~m~IthviRg~d~l~~t~~~~-~l~~alg~~~p 235 (461)
T PRK12558 167 DLVRGPQTVDLASLS---DPVLVREDGTYLYTLP---SVV---D-DIDMGVTHIIRGDDHVTNTGVQI-ALFRALGAEPP 235 (461)
T ss_pred ECCCCEEEECCCCCC---CEEEEECCCCCEEEEE---EEE---C-CCCCCCCEEEECHHHHHHCHHHH-HHHHHHCCCCC
T ss_conf 014630673343458---8289934897103455---785---5-75578854463685886159999-99999579998
Q ss_pred CCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH-----------HHHHHHHHHHCCHHHH
Q ss_conf 5115311011012211000001223302456777776-------------321-----------1234555420001233
Q gi|254780285|r 380 QINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS-----------DSVRFMMLWRKNSELL 435 (586)
Q Consensus 380 ~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~-----------~aiky~~L~~~~~~~~ 435 (586)
.+.|+.. + +..||+ |+|+|.|. +.+.+.-++ +|- ..+..|+|+.=..+.-
T Consensus 236 ~~~h~pl--i-~~~~g~--klskR~g~-~sv~~yr~~GylPeAl~NyLalLGWs~~~~Ei~sl~eli~~Fdl~~i~kS~A 309 (461)
T PRK12558 236 VFGHHNL--L-TTASGE--GLSKRTGA-LSVGSLREAGYEPMAVASLAVLLGTSENVDAAPDMAALAEHFDLASVSRSSA 309 (461)
T ss_pred EEEECCE--E-ECCCCC--CCCCCCCC-CCHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCEECCCCCCCCC
T ss_conf 0897134--5-689998--16666897-5899999879984789999998479998067764887753054778888887
Q ss_pred HHHHHHHHHH
Q ss_conf 3447776532
Q gi|254780285|r 436 DFDFCKVKEQ 445 (586)
Q Consensus 436 ~Fd~d~~l~~ 445 (586)
.||++++...
T Consensus 310 ~FD~~KL~wl 319 (461)
T PRK12558 310 KFDPAELEAL 319 (461)
T ss_pred CCCHHHHHHH
T ss_conf 5799999999
No 35
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=99.34 E-value=2.7e-11 Score=98.22 Aligned_cols=273 Identities=21% Similarity=0.212 Sum_probs=136.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHH--H----HHHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf 3443224411777778568999999998506664102014775314--5----556789875322210245000660110
Q gi|254780285|r 128 VSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQ--I----NTLALSVFWRYQQALYNNDSDLPEGYY 201 (586)
Q Consensus 128 sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q--~----~~li~~~~~~~~~~~~~~~~~~~e~~~ 201 (586)
.-|-|||.||+|++|+|++-.-+|| +.-|-=+.|+ .|.-.. + ..++-.+.|....+ .|
T Consensus 7 fAPSPtG~lH~G~~rtal~n~l~a~--~~~g~f~lRi---eDtD~~R~~~~~~~~i~~~l~wlgi~~--------de--- 70 (467)
T PRK01406 7 FAPSPTGYLHVGGARTALFNWLFAR--HHGGKFILRI---EDTDLERSTPEAVDAILDGLKWLGLDW--------DE--- 70 (467)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHH--HHCCEEEEEE---CCCCCCCCCHHHHHHHHHHHHHCCCCC--------CC---
T ss_conf 5899998422478999999999999--7299699996---879988787799999999999879999--------98---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHH
Q ss_conf 24100001278888875764134302379999999789988754555887087521000158873010457999999999
Q gi|254780285|r 202 PGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLA 281 (586)
Q Consensus 202 ~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~ 281 (586)
|.|......+.+..+.+++++..-. ..-++.+.-++..++.-..-|..+ .+.+.. ...-.+-+....
T Consensus 71 -~p~~QS~r~~~y~~~~~~L~~~g~a-----Y~cfcs~e~l~~~r~~~~~~~~~~-~Y~~~~------r~l~~~~~~~~~ 137 (467)
T PRK01406 71 -GPYRQSERFDRYKEVAEQLLEKGKA-----YYCYCTPEELEAMREEQLARGEPP-RYDGRC------RDLTPEEVAARE 137 (467)
T ss_pred -CCEEHHCCHHHHHHHHHHHHHCCCC-----EECCCCHHHHHHHHHHHHHCCCCC-CCCHHH------HCCCHHHHHHHH
T ss_conf -8861744899999999999984998-----644778999998699998479998-888555------338987887676
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC--CCCCC
Q ss_conf 7498511342675556542000247815651011022222221024652135688899999975225554333--67776
Q gi|254780285|r 282 RQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIY--VMGSD 359 (586)
Q Consensus 282 ~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iy--Vv~~~ 359 (586)
.+|..+--.+..|........|.-.|.+.+.+...+ |.||+||||++||.- |...+ ..+.-|. |-|.|
T Consensus 138 ~~g~~~viR~k~~~~~~~~~~D~i~G~i~~~~~~~~---D~vi~r~dg~pty~~---a~vvD----D~~m~it~virg~d 207 (467)
T PRK01406 138 AEGRPPVIRFKVPQEGEIVWDDLVRGEIEFSNSELD---DLVILRSDGTPTYNL---AVVVD----DHDMGITHVIRGED 207 (467)
T ss_pred HCCCCCEEEEECCCCCCEEEEHHHCCCCCCCCCCCC---CEEEEECCCCCEEEE---CCCCC----CCCCCCCEEECCCC
T ss_conf 469982599866888865764030466555755568---816880699833420---20057----62368865403753
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH-------
Q ss_conf 136899999999972266345115311011012211000001223302456777776-------------321-------
Q gi|254780285|r 360 HSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS------- 419 (586)
Q Consensus 360 Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~------- 419 (586)
|-.-...=..+.+++|+..+.+.|+.. + +..||+ |+|+|.|.+ .+.++-++ +|-
T Consensus 208 ~~~~t~~~~~l~~~l~~~~p~~~H~pl--i-~~~~g~--kLSKR~~~~-~i~~~~~~GylPeAllNyLa~LGWs~~~~Ei 281 (467)
T PRK01406 208 HLSNTPRQILLYEALGWEVPVFAHLPL--I-LGEDGK--KLSKRHGAT-SVMQYRDMGYLPEALLNYLARLGWSHGDQEI 281 (467)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEEEEC--E-ECCCCC--CCCCCCCCC-CHHHHHHCCCCHHHHHHHHHHHCCCCCCCHH
T ss_conf 588899999999983899971673011--1-489998--155668852-1999998599889999999984799984142
Q ss_pred ----HHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf ----12345554200012333447776532
Q gi|254780285|r 420 ----DSVRFMMLWRKNSELLDFDFCKVKEQ 445 (586)
Q Consensus 420 ----~aiky~~L~~~~~~~~~Fd~d~~l~~ 445 (586)
..++.|+|+.=..+.-.||.+++...
T Consensus 282 fsl~eli~~Fdl~~isks~A~FD~~KL~~l 311 (467)
T PRK01406 282 FSLEELIELFDLERVSKSPARFDIEKLEWL 311 (467)
T ss_pred CCHHHHHHHCCCCCCCCCCCCCCHHHHHHH
T ss_conf 058999973683668788855489999999
No 36
>TIGR00464 gltX_bact glutamyl-tRNA synthetase; InterPro: IPR004527 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.31 E-value=4.4e-10 Score=89.67 Aligned_cols=374 Identities=21% Similarity=0.254 Sum_probs=197.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCC--HHH----HHHHHHHHHHHHHHCCCCCCCCCHHHCC
Q ss_conf 4432244117777785689999999985066641020147753--145----5567898753222102450006601102
Q gi|254780285|r 129 SANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAG--AQI----NTLALSVFWRYQQALYNNDSDLPEGYYP 202 (586)
Q Consensus 129 SpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G--~Q~----~~li~~~~~~~~~~~~~~~~~~~e~~~~ 202 (586)
-|-|||-||||-+|.||.---+||=. -|-=++| |-|+- +-+ ..++-++.|.... +++....+.+ .
T Consensus 7 APSPTG~LHiGg~RTAlFNyLfAr~~--~G~F~lR---iEDTD~eR~~~e~~~~i~e~LkWlGi~--wDEs~~~gG~--Y 77 (513)
T TIGR00464 7 APSPTGYLHIGGARTALFNYLFARHT--GGKFILR---IEDTDLERNIEEAEESILEGLKWLGIS--WDESVYVGGN--Y 77 (513)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHC--CCCEEEE---EEECCCCCCCHHHHHHHHHHHHHCCCC--CCCCCCCCCC--C
T ss_conf 38887543533689999999999863--8937998---753671007244689999888745867--4667568986--3
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHH
Q ss_conf 41000012788888757641343023799999997899887545-55887087521000158873010457999999999
Q gi|254780285|r 203 GVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIR-DDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLA 281 (586)
Q Consensus 203 ~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~ 281 (586)
+.|+.....+.++++.+++++..-. .+=+|.++-|+..| +.++.-+-.-=.|+++. ...-.+-++...
T Consensus 78 ~Py~QS~R~~~Y~~~~~~Ll~~g~A-----YrCYCs~E~LE~~Rke~~q~~~~~~PrYd~~c------r~l~~~~~~~~l 146 (513)
T TIGR00464 78 GPYYQSQRLDIYKKYIKELLEEGLA-----YRCYCSKEELERLRKEEIQKANKETPRYDGRC------RNLHEEEIENKL 146 (513)
T ss_pred EEEHHHHHHHHHHHHHHHHHHCCCC-----EEEECCHHHHHHHHHHHHHHHCCCCCCCCCCC------CCCCCHHHHHHH
T ss_conf 0111013678999999999745993-----44227846788998999997088534837533------478713788764
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCC---CCCCCCCCC-------CCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 74985113426755565420002478156510110222---222210246-------52135688899999975225554
Q gi|254780285|r 282 RQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDD---VDRPLLKSD-------GSYTYFAADLAYFKCKYERGFDN 351 (586)
Q Consensus 282 ~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---~d~vl~rsD-------Gt~~Y~t~DiA~~~~k~e~~~d~ 351 (586)
.+|....-.+..|.......-|.-+|.+-+.+...+.| .|.||+|+| |+||| ||--
T Consensus 147 ~~~~~pvvRfK~P~~~~~~F~D~v~G~i~~~~~~l~~dkrydD~vi~k~DenPeeafG~PTY--------------NfAv 212 (513)
T TIGR00464 147 AKGIPPVVRFKIPQEAEISFNDQVRGEITFEGSELDNDKRYDDLVILKSDENPEEAFGSPTY--------------NFAV 212 (513)
T ss_pred HCCCCCEEEEECCCCCCEEECCEEEEEEEECCCCCCCCCCCCCEEEEECCCCHHHHCCCCCC--------------CEEE
T ss_conf 43799668874079984245050221588558667866441561264068883221488642--------------5067
Q ss_pred CCC---------CCCCCH-HHHHHHHHHHHHHHCCC-CCCCEEEECCHHHCCCCCCCCCCCCCCC-CHHHHHHHHHH---
Q ss_conf 333---------677761-36899999999972266-3451153110110122110000012233-02456777776---
Q gi|254780285|r 352 MIY---------VMGSDH-SGYVKRLEAVAAAVSEK-KAQINVLLCELVRLYRDGMPIKMSKRAG-DFITLRHVVDE--- 416 (586)
Q Consensus 352 ~iy---------Vv~~~Q-~~h~~~v~~~~~~lg~~-~~~~~~~~~~~v~l~~dg~~~kmstR~G-~~v~l~dll~e--- 416 (586)
+|+ +=|+|| +..-+|+ .+.+++|+. -+++.|++- + +.++|| |||+|.| +...+.+..++
T Consensus 213 vvDD~lM~IThViRGedHisNTPkQI-~iy~Alg~~~iP~f~H~p~--I-~~~~gK--KLSKRdg~~~~si~q~~~~GyL 286 (513)
T TIGR00464 213 VVDDYLMKITHVIRGEDHISNTPKQI-LIYKALGWKRIPTFAHLPL--I-LNEDGK--KLSKRDGKTATSIEQFKEQGYL 286 (513)
T ss_pred EEECCCCCCCEEEECCHHHCCCHHHH-HHHHHCCCCCCCCEEEEEE--E-ECCCCC--EEECCCCHHHHHHHHHHHCCCC
T ss_conf 88533255451441202006718999-9999708898881553535--8-569884--0012064025768999866887
Q ss_pred ------------------H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------------------3---------2112345554200012333447776532024436788888888999987533
Q gi|254780285|r 417 ------------------V---------GSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAK 469 (586)
Q Consensus 417 ------------------v---------g~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~ 469 (586)
+ --..+.+|.|..=..+.=.|||.+..-++.. ||+ .|+.+.-.=.+
T Consensus 287 PEAl~Nyl~lLGW~~~~dlas~~~E~Fs~~elie~F~l~~~~kspA~Fd~~KL~w~N~~----Ylk---~riL~~~~l~~ 359 (513)
T TIGR00464 287 PEALINYLALLGWSPPDDLASKDQEIFSLEELIEIFSLNRLSKSPAKFDIKKLKWLNAH----YLK---ERILPDEELLE 359 (513)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH----HHH---HHCCCHHHHHH
T ss_conf 78999999984689652334465663677999820681102221012444899999999----998---64489989998
Q ss_pred HHCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 2002468322342-235521149989999999984218999999985281279999999999889998706866666543
Q gi|254780285|r 470 DIFPDLDFDLFPR-NVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFV 548 (586)
Q Consensus 470 ~~~~~~~~~~~~~-~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~ 548 (586)
-+++-.-.. .....+....+.+| |...+.-| +-=|.++-|++..+.=||+.- .
T Consensus 360 ----ll~~~~~~~~~~~~~~~~~~~q~w-L~~l~~l~-------------~~~~~~l~e~~~~~~~ff~~~--------~ 413 (513)
T TIGR00464 360 ----LLDPHLKKKESVVKTSTLNEEQEW-LKELLLLL-------------KERLKTLKELAELIRLFFEDK--------K 413 (513)
T ss_pred ----HHHHHHHCCCCEECCCCCCCHHHH-HHHHHHHH-------------HHHHHHHHHHHHHHHHHHCCH--------H
T ss_conf ----876775406831025566405789-99999986-------------566778999999999860343--------6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 57878999999999999999999987315
Q gi|254780285|r 549 QANNRKLTMMRLQLVHAVASIINSGLNII 577 (586)
Q Consensus 549 ~~~~~~~~~~RL~L~~a~~~vL~~~L~LL 577 (586)
.-+..+. ..| ..+..++.+|+....-|
T Consensus 414 ~~~~~~~-~~~-~~~~~~~~~L~~~~~~L 440 (513)
T TIGR00464 414 EVDEDAK-KKL-EKFKNVKEVLEALKKKL 440 (513)
T ss_pred HHHHHHH-HHH-HHHHHHHHHHHHHHHHH
T ss_conf 7656899-889-98898999999999997
No 37
>PRK12410 glutamyl-tRNA synthetase; Provisional
Probab=99.31 E-value=2e-11 Score=99.15 Aligned_cols=129 Identities=21% Similarity=0.305 Sum_probs=72.0
Q ss_pred CCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC--CCCCCHH-HHHHHHHHHHHHHCC
Q ss_conf 2000247815651011022222221024652135688899999975225554333--6777613-689999999997226
Q gi|254780285|r 300 QKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIY--VMGSDHS-GYVKRLEAVAAAVSE 376 (586)
Q Consensus 300 ~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iy--Vv~~~Q~-~h~~~v~~~~~~lg~ 376 (586)
...+.-.|.+.+.+...+ |.||+||||++||.- |... ...+.=|. |=|.||- ...+|+ .+.++||+
T Consensus 148 ~~~D~v~G~i~~~~~~~~---D~Vi~R~DG~ptY~l---a~VV----DD~~m~IThViRGeDhl~nT~kQi-~l~~aLg~ 216 (433)
T PRK12410 148 SFTDAIKGELSFEPDEID---SFVILRQDKTPTYNF---ACAV----DDMLYDISFIIRGEDHVSNTPKQI-LIREALGY 216 (433)
T ss_pred EEEECCCCEECCCCCCCC---CEEEEECCCCEEEEE---EEEE----CCCCCCCCEEECCHHHHHHHHHHH-HHHHHCCC
T ss_conf 886344753415811058---748993489835642---2796----488787400264285999999999-99998699
Q ss_pred CCC-CCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH----------HHHHHHHHHHCCH
Q ss_conf 634-5115311011012211000001223302456777776-------------321----------1234555420001
Q gi|254780285|r 377 KKA-QINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS----------DSVRFMMLWRKNS 432 (586)
Q Consensus 377 ~~~-~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~----------~aiky~~L~~~~~ 432 (586)
+.+ ++.|+.. + +..||+ |+|+|.|.+ .+.+.-++ +|- ..+..|+|++=..
T Consensus 217 ~~P~~~~H~pl--i-~~~~g~--kLSKR~g~~-~i~~yre~GylPeAl~NyLalLG~~~~~Eifs~~eli~~Fdl~~i~k 290 (433)
T PRK12410 217 NKPITYAHLPI--I-LNEEGK--KMSKRDNAS-SVKWLLEQGFLPEAIANYLILLGNKTPKEIFTLDEAIEWFDIENISK 290 (433)
T ss_pred CCCCEEECCCC--E-ECCCCC--CCCCCCCCC-CHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHEEEHHCCCC
T ss_conf 99852532010--0-189998--556668983-88889767987599999999828999733146898844551600578
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2333447776532
Q gi|254780285|r 433 ELLDFDFCKVKEQ 445 (586)
Q Consensus 433 ~~~~Fd~d~~l~~ 445 (586)
+.-.||.+++...
T Consensus 291 s~A~FD~~KL~wl 303 (433)
T PRK12410 291 SPAKFDLKKLRQL 303 (433)
T ss_pred CCCCCCHHHHHHH
T ss_conf 8884899999999
No 38
>pfam00749 tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain. Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Probab=99.22 E-value=4.8e-11 Score=96.43 Aligned_cols=238 Identities=20% Similarity=0.206 Sum_probs=100.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHH------HHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf 344322441177777856899999999850666410201477531455------56789875322210245000660110
Q gi|254780285|r 128 VSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQIN------TLALSVFWRYQQALYNNDSDLPEGYY 201 (586)
Q Consensus 128 sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~------~li~~~~~~~~~~~~~~~~~~~e~~~ 201 (586)
.-|.|||+||+||+|++++-.-.||-. -|-=+.| |.|.-.+=. .+.-.+.|...++ + +
T Consensus 6 FAPSPTG~lHiG~~rtAl~n~l~Ar~~--~G~fiLR---IEDtD~~R~~~e~~~~I~~dL~wLGl~w--D------e--- 69 (314)
T pfam00749 6 FAPSPTGYLHIGHARTALFNYLFAKNY--NGKFILR---FDDTDPEREKPEYEESILEDLKWLGIKW--D------E--- 69 (314)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH--CCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHHCCCC--C------C---
T ss_conf 288989864489999999999999980--9989999---6878988687689999999999953789--9------8---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEECHHHHHHCCHHHHHHHHHHH
Q ss_conf 241000012788888757641343023799999997899887545558870875-2100015887301045799999999
Q gi|254780285|r 202 PGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQ-HDIFISEDDFHRGDPSPIRDIIDNL 280 (586)
Q Consensus 202 ~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~-fD~~~~Es~~~~~~~~~i~~~i~~l 280 (586)
+.|......+.+.++..++.+... . ..-++...-++..++.....+.. -+.+.++.. ...++.+...
T Consensus 70 -~~~~QS~r~~~Y~~~~~~L~~~g~-a----Y~C~cs~~el~~~r~~~~~~~~~~~~~y~~~~~------~l~~~~~~~~ 137 (314)
T pfam00749 70 -KPYYQSDRFDIYYKYAEELIEKGL-A----YVCFCTPEELEEEREEQEALGSPERPRYDEECL------RLFEEEMRKG 137 (314)
T ss_pred -CCEEHHCCHHHHHHHHHHHHHCCC-C----CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHC------CCCHHHHHCC
T ss_conf -835520209999999999997499-5----225899999999998776359998998832202------2799998615
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCC
Q ss_conf 97498511342675556542000247815651011022222221024652135688899999975225554333-67776
Q gi|254780285|r 281 ARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIY-VMGSD 359 (586)
Q Consensus 281 ~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iy-Vv~~~ 359 (586)
..+|..+--.+..+........|.-.+.+.+.+...+ |.|+.|+||.++|- +|...+=. ...|-- |=|.|
T Consensus 138 ~~~~~~~~~R~k~~~~~~~~~~D~v~G~i~~~~~~~~---D~vi~R~dg~ptY~---lA~vVDD~---~~~IThViRG~D 208 (314)
T pfam00749 138 EAEGGKATLRFKIPMESPYVMRDLVRGRIKFEPSALH---DRTGLKWDGYPTYD---FAVVIDDA---IMGITHVLRGEE 208 (314)
T ss_pred CCCCCCCEEEEECCCCCCEEEECCCCCEEEECHHHCC---CCEEECCEEEEEEE---EEEEECCC---CCCCCEEECCCC
T ss_conf 0258872278850688862676576653884445388---61764460545652---30587255---688883756601
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCH
Q ss_conf 136899999999972266345115311011012211000001223302
Q gi|254780285|r 360 HSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDF 407 (586)
Q Consensus 360 Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~ 407 (586)
+-.-..+=..+.+.||++.+.+.|+.. .+..+|+ |||+|.|..
T Consensus 209 ~l~~T~~Q~~l~~aLg~~~P~y~H~pl---i~~~~G~--kLSKR~~~~ 251 (314)
T pfam00749 209 HLDNTPKQIWIYQALGWEVPPFIHEYL---RLNLDGT--KLSKRKLSL 251 (314)
T ss_pred CCCCCHHHHHHHHHCCCCCCCEEEEEE---EECCCCC--CCCCCCCHH
T ss_conf 001889999999963999985698870---8989998--533727621
No 39
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=1.6e-08 Score=78.77 Aligned_cols=262 Identities=23% Similarity=0.344 Sum_probs=145.7
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 55410002234432244117777785689999999985066641020147753145556789875322210245000660
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPE 198 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e 198 (586)
++.+|-+=-+.|-+=--.||||.|+.|.-|.|.|.|++.||.|. || ...++-
T Consensus 19 ~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~---yV-------------------~NiTDI------ 70 (464)
T COG0215 19 DPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVT---YV-------------------RNITDI------ 70 (464)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCEEE---EE-------------------ECCCCC------
T ss_conf 99916899618825776445667652029999999998297079---99-------------------646666------
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEECHHHHHHCCHHHHHHHH
Q ss_conf 110241000012788888757641343023799999997899887545558870875-2100015887301045799999
Q gi|254780285|r 199 GYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQ-HDIFISEDDFHRGDPSPIRDII 277 (586)
Q Consensus 199 ~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~-fD~~~~Es~~~~~~~~~i~~~i 277 (586)
++.+..+..+.-. . +.+. .+...+.+.++++.|||. =|....=+++. ..|-+++
T Consensus 71 -----------DDKIi~rA~~~g~------~---~~ev-~~~~i~~f~~D~~aL~v~~p~~~PraTe~I----~~iI~~I 125 (464)
T COG0215 71 -----------DDKIINRAREEGL------S---IREV-AERYIAAFFEDMDALNVLPPDIEPRATEHI----DEIIEFI 125 (464)
T ss_pred -----------CHHHHHHHHHHCC------C---HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCHHHCH----HHHHHHH
T ss_conf -----------3899999998299------9---9999-999999999999982999986557476479----9999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHC---CCCCCC-------CCCCCCCCHHHHHHHH-HHHHHHHH
Q ss_conf 999974985113426755565420002478156510110---222222-------2102465213568889-99999752
Q gi|254780285|r 278 DNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMV---GDDVDR-------PLLKSDGSYTYFAADL-AYFKCKYE 346 (586)
Q Consensus 278 ~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~d~-------vl~rsDGt~~Y~t~Di-A~~~~k~e 346 (586)
++|.++|++|+.. +|.+.|+...+ |.-..+ .--|-++..- -+|- =..+||-.
T Consensus 126 ~~Li~kG~AY~~~---------------~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~--Krnp~DFvLWK~s 188 (464)
T COG0215 126 EKLIEKGYAYVAD---------------DGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEE--KRNPLDFVLWKAA 188 (464)
T ss_pred HHHHHCCCEEEEC---------------CCCEEEECCCHHHHHHHCCCCCHHHHHHCCCCCCCCC--CCCCHHHEEECCC
T ss_conf 9999779658846---------------9828995243031786528987667751354566545--5880011244258
Q ss_pred CC---------------------------CCCCCCCCCCC-------HHHHHHHHHHHHHHHCCC-CCCCEEEECCHHHC
Q ss_conf 25---------------------------55433367776-------136899999999972266-34511531101101
Q gi|254780285|r 347 RG---------------------------FDNMIYVMGSD-------HSGYVKRLEAVAAAVSEK-KAQINVLLCELVRL 391 (586)
Q Consensus 347 ~~---------------------------~d~~iyVv~~~-------Q~~h~~~v~~~~~~lg~~-~~~~~~~~~~~v~l 391 (586)
+. +...+++=|-. |.....|..+ ..|-. .++ .-++.||++.
T Consensus 189 k~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea---~~g~~~~a~-yWmH~G~l~i 264 (464)
T COG0215 189 KPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEA---ATGVKPFAK-YWMHNGFLNI 264 (464)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHH---HHCCCCCEE-EEEECCEEEE
T ss_conf 999988779988999944688999999870897512468502558886308999876---429976005-8688264524
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 221100000122330245677777632112345554200012333447776532024436788888888
Q gi|254780285|r 392 YRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYAR 460 (586)
Q Consensus 392 ~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR 460 (586)
+|+ |||+--||++++.|++++..-.++||++|+..-.+.++|+.+.+.. .+ +.--++.=++.|
T Consensus 265 --~ge--KMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~-A~-~~l~rl~~~~~~ 327 (464)
T COG0215 265 --DGE--KMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEE-AK-KALERLYNALRR 327 (464)
T ss_pred --CCC--CCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHH-HH-HHHHHHHHHHHH
T ss_conf --672--7652357766799998654879999999987757765668999999-99-999999999998
No 40
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=99.12 E-value=8.6e-09 Score=80.61 Aligned_cols=170 Identities=18% Similarity=0.232 Sum_probs=114.8
Q ss_pred CCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3336777613-689999999997226634511531101101221100000122330245677777632112345554200
Q gi|254780285|r 352 MIYVMGSDHS-GYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK 430 (586)
Q Consensus 352 ~iyVv~~~Q~-~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~ 430 (586)
-+|+-|.||. ++|..+......+....+-..++..||| +.++|+ |||+.+||+|.-++++++-|.+++|+...+.+
T Consensus 591 D~y~eG~Dq~rgWF~s~l~~s~~~~~~~Pfk~v~~hG~V-lDe~G~--KMSKS~GNvvdP~~ii~~yGADalRl~~as~~ 667 (966)
T PRK13804 591 DLYLEGSDQHRGWFHSSLLESCGTRGRAPYKAVLTHGFT-LDEKGE--KMSKSLGNVVDPQDVIKQSGADILRLWVASVD 667 (966)
T ss_pred CEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCEEECCEE-ECCCCC--CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
T ss_conf 168625418886999999874220688774510341168-988988--88787889899899998729218889998477
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 01233344777653202443678888888899998753320024683223422355211499899999999842189999
Q gi|254780285|r 431 NSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIE 510 (586)
Q Consensus 431 ~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~ 510 (586)
...++.|+.+.+... .. . | -++...+|=.-....+++.. ..++. ..+.+..+-++..|..+-..+.
T Consensus 668 ~~~d~~~~~~~l~~~-~~-~--~-----~ki~Nt~rf~l~nl~~f~~~----~~~~~-~~l~~~D~wil~~l~~~~~~v~ 733 (966)
T PRK13804 668 YQDDQRIGKEILKTN-AE-T--Y-----RKLRNTLRWMLGTLAHFDPG----EAVAY-ADLPELERLMLHRLNELDATVR 733 (966)
T ss_pred CCCCCCCCHHHHHHH-HH-H--H-----HHHHHHHHHHHHHHCCCCCC----CCCCH-HHCCHHHHHHHHHHHHHHHHHH
T ss_conf 544634568999999-99-9--9-----99999999999864279832----34892-2352878999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 99985281279999999999-88999870
Q gi|254780285|r 511 NATIAQEPYKLAFYLYDLAS-VFHGHWSH 538 (586)
Q Consensus 511 ~a~~~~~P~~l~~Yl~~La~-~Fn~fY~~ 538 (586)
.+++++.-|..++-+++.+. .|++||-.
T Consensus 734 ~~~~~Y~f~~a~~~l~~F~~~dLs~~Yle 762 (966)
T PRK13804 734 KAYEAFDFKTIYKALVNFMTVDLSAFYFD 762 (966)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98511359999999999999878799998
No 41
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=1.6e-09 Score=85.71 Aligned_cols=114 Identities=24% Similarity=0.218 Sum_probs=61.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCC
Q ss_conf 22222102465213568889999997522555433367776136899999999972266345115311011012211000
Q gi|254780285|r 319 DVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPI 398 (586)
Q Consensus 319 ~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~ 398 (586)
..| |+.|+||.+||- +|-..+=..-+..++ +=|.||-....+=..+.+.+|++.+.+.|+. ++.. .+|+
T Consensus 181 ~~d-v~~r~dg~ptY~---favvvDD~~mgITHv--iRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~--li~~-~~g~-- 249 (472)
T COG0008 181 PDF-VILRYDGYPTYN---FAVVVDDHLMGITHV--LRGEDHLDNTPRQIWLYEALGWPPPVYAHLP--LLLN-EDGK-- 249 (472)
T ss_pred CCC-EEECCCCCCCCC---EEEEECHHHCCCCEE--EECHHHCCCCHHHHHHHHHCCCCCCCEEEEE--EEEC-CCCC--
T ss_conf 756-042477774543---002610321688637--7344420478999999997399998279751--0466-8878--
Q ss_pred CCCCCCCCHHHHHHHHHH----------H-----HH--H---------HHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 001223302456777776----------3-----21--1---------234555420001233344777653
Q gi|254780285|r 399 KMSKRAGDFITLRHVVDE----------V-----GS--D---------SVRFMMLWRKNSELLDFDFCKVKE 444 (586)
Q Consensus 399 kmstR~G~~v~l~dll~e----------v-----g~--~---------aiky~~L~~~~~~~~~Fd~d~~l~ 444 (586)
|||+|+| .+.+.+...+ . |. + .+..+++.....+...||++++..
T Consensus 250 kLSKr~~-~~~~~~~~~~G~~~~al~~~~allg~~~~~~~~e~f~~e~~i~~fd~~~~~ks~a~fd~~kL~~ 320 (472)
T COG0008 250 KLSKRKG-AVSIGEYRVEGWLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPAAFDRKKLDW 320 (472)
T ss_pred EECCCCC-CCCCCHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 3047667-6653025551889388999999846889820699989999875511210211610136877676
No 42
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=99.06 E-value=1.8e-09 Score=85.39 Aligned_cols=77 Identities=26% Similarity=0.248 Sum_probs=45.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCC
Q ss_conf 22210246521356888999999752255543336777613689999999997226634511531101101221100000
Q gi|254780285|r 321 DRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKM 400 (586)
Q Consensus 321 d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~km 400 (586)
|.||.|+||+++|- +|...+=..-+...+ |=|.|+-.-..+=..+.+.||++.+.+.|+.. + +..+|+ |+
T Consensus 169 DfVi~R~Dg~ptY~---lAvvVDD~~~gIThV--iRG~Dll~sT~~Q~~L~~aLg~~~P~y~H~pl--i-~~~~G~--KL 238 (299)
T PRK05710 169 DFVLARRDGLFAYN---LAVVVDDALQGVTHV--VRGADLLESTPRQIYLQQLLGLPTPRYLHHPL--V-LNPDGA--KL 238 (299)
T ss_pred CEEEEECCCCEEEE---EEEEECCCCCCCCEE--EECHHHHHCCHHHHHHHHHCCCCCCCEEEECC--E-ECCCCC--CC
T ss_conf 87999238970577---864434643688879--81602011489999999981999985796222--2-786988--25
Q ss_pred CCCCCCH
Q ss_conf 1223302
Q gi|254780285|r 401 SKRAGDF 407 (586)
Q Consensus 401 stR~G~~ 407 (586)
|+|.|..
T Consensus 239 SKr~~a~ 245 (299)
T PRK05710 239 SKQNGAP 245 (299)
T ss_pred CCCCCCC
T ss_conf 7879983
No 43
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=99.06 E-value=5.5e-09 Score=81.99 Aligned_cols=305 Identities=17% Similarity=0.193 Sum_probs=158.2
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
+.+|-+=-+.|-+-.+.||||+|+.+.-|.|.|.|++.||+|.-.-=|-| -
T Consensus 34 ~~~v~mYvCGpTVYd~~HiGhaR~~v~fD~l~R~L~~~G~~V~~v~NiTD----------------------i------- 84 (411)
T TIGR03447 34 GPEAGMYVCGITPYDATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTD----------------------V------- 84 (411)
T ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----------------------C-------
T ss_conf 98368996588478888622341689999999999983985589961465----------------------4-------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CEECHHHHHHCCHHHHHHHHH
Q ss_conf 1024100001278888875764134302379999999789988754555887087521-000158873010457999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHD-IFISEDDFHRGDPSPIRDIID 278 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD-~~~~Es~~~~~~~~~i~~~i~ 278 (586)
++.+.+...++- .. +++. .+...+.+.++++.|||.-- .+..=|+.. ..+-+.++
T Consensus 85 ----------DDKii~~A~~~g------~~---~~el-a~~y~~~f~~d~~~Lni~~p~~~praTe~I----~~ii~~I~ 140 (411)
T TIGR03447 85 ----------DDPLFERAERDG------VD---WREL-GTSQIDLFREDMEALRVLPPRDYIGAVESI----DEVIEMVE 140 (411)
T ss_pred ----------CHHHHHHHHHHC------CC---HHHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCCCH----HHHHHHHH
T ss_conf ----------259999998829------89---9999-999999999999974999998776743479----99999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHH---CCC----CCCCC---CCCCCCCH-HHHHHHHH-HHHHHHH
Q ss_conf 9997498511342675556542000247815651011---022----22222---10246521-35688899-9999752
Q gi|254780285|r 279 NLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTM---VGD----DVDRP---LLKSDGSY-TYFAADLA-YFKCKYE 346 (586)
Q Consensus 279 ~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~----~~d~v---l~rsDGt~-~Y~t~DiA-~~~~k~e 346 (586)
.|.++|++|+..... .+.+.|+... +|. +.+.. ...+.|.. .+.-++-+ .++||..
T Consensus 141 ~Li~kG~AY~~~~~~------------~gdVYFdv~~~~~yG~Ls~~~~~~~~~~~~~~~~~~~~~~Kr~p~DFaLWK~~ 208 (411)
T TIGR03447 141 KLLAAGAAYEVEGPE------------YPDVYFSIEATEQFGYESGYDRATMLELFAERGGDPDRPGKRDPLDALLWRAA 208 (411)
T ss_pred HHHHCCCEEEECCCC------------CCCEEEEECCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCC
T ss_conf 998689679827987------------77579872540110652257999998775111477420024673567771478
Q ss_pred CCCC---------------------------CCCCCCCC-------CHHHHHHHHHHHHHHHCC-CCCCCEEEECCHHHC
Q ss_conf 2555---------------------------43336777-------613689999999997226-634511531101101
Q gi|254780285|r 347 RGFD---------------------------NMIYVMGS-------DHSGYVKRLEAVAAAVSE-KKAQINVLLCELVRL 391 (586)
Q Consensus 347 ~~~d---------------------------~~iyVv~~-------~Q~~h~~~v~~~~~~lg~-~~~~~~~~~~~~v~l 391 (586)
+.-+ ..|++=+- -|.....|..++ .|. +-++. -++.+++.+
T Consensus 209 k~gep~W~SPWG~GRPGWHIECSaMs~~~LG~~~DIHgGG~DL~FPHHENEiAQsea~---~g~~~~a~y-WmH~g~l~~ 284 (411)
T TIGR03447 209 REGEPSWDSPFGPGRPGWHIECSAIATNRLGAGFDIQGGGSDLIFPHHEFSAAHAEAA---TGVRRMARH-YVHAGMIGL 284 (411)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH---HCCCHHHHH-HHECCEEEE
T ss_conf 8888876699888688377999999998759975787886035788853099999986---688737667-653002312
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2211000001223302456777776-321123455542000123334477765320244367888888889999875332
Q gi|254780285|r 392 YRDGMPIKMSKRAGDFITLRHVVDE-VGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKD 470 (586)
Q Consensus 392 ~~dg~~~kmstR~G~~v~l~dll~e-vg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~ 470 (586)
+|+ |||+-.||++++.||+.+ ....++||++|+..-.+.+.|+++.+.. .+. +..|..+-+.....
T Consensus 285 --~ge--KMSKSlGN~~ti~dl~~~g~~p~~iR~~lL~~HYRspl~fs~~~L~~-A~~--------~l~r~~~a~~~~~~ 351 (411)
T TIGR03447 285 --DGE--KMSKSLGNLVFVSKLRAAGVDPAAIRLGLLAGHYRQDRDWTDAVLAE-AEA--------RLARWRAALAATDA 351 (411)
T ss_pred --CCE--ECCCCCCCEEEHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH-HHH--------HHHHHHHHHHCCCC
T ss_conf --870--55666887257999986499899999999714489976889899999-999--------99999998726677
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 0024683223422355211499899999999842189999999852812799999999998899
Q gi|254780285|r 471 IFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHG 534 (586)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~ 534 (586)
.+ ...++ .. +...-..++.--.-..-+++|++.-|+
T Consensus 352 ---------------------~~-~~~~~---~~---~~~Al~DDlNTp~Ala~l~~~~~~~n~ 387 (411)
T TIGR03447 352 ---------------------PD-ATDLI---AR---LRQHLANDLDTPAALAAVDNWAAAALS 387 (411)
T ss_pred ---------------------CC-HHHHH---HH---HHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf ---------------------52-26799---99---999986016729999999999999984
No 44
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=99.01 E-value=5.6e-09 Score=81.92 Aligned_cols=306 Identities=17% Similarity=0.190 Sum_probs=159.6
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
|.+|-+=-+.|-+=...||||+|+.+.-|.|.|+|++.||+|.-.-=|-|.
T Consensus 7 g~~V~mY~CGPTVYd~~HiGhaRt~v~fD~l~R~L~~~gy~V~~v~NiTDV----------------------------- 57 (384)
T PRK12418 7 GGTATMYVCGITPYDATHLGHAATYLAFDLVQRVWLDAGHDVHYVQNVTDV----------------------------- 57 (384)
T ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC-----------------------------
T ss_conf 996899966886888854233516899999999999809964999810506-----------------------------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CEECHHHHHHCCHHHHHHHHH
Q ss_conf 1024100001278888875764134302379999999789988754555887087521-000158873010457999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHD-IFISEDDFHRGDPSPIRDIID 278 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD-~~~~Es~~~~~~~~~i~~~i~ 278 (586)
++.+.++..++-. . +.+. .+...+.+.++++.|||.-- .+..=|++. ..+-++++
T Consensus 58 ----------DDKii~~A~~~g~-----~----~~el-a~~~~~~f~~d~~~Lnv~~p~~~praTe~I----~~ii~~I~ 113 (384)
T PRK12418 58 ----------DDPLLERAARDGV-----D----WRDL-AAREIALFREDMAALRVLPPRDYVGAVESI----PEVVELVE 113 (384)
T ss_pred ----------CHHHHHHHHHHCC-----C----HHHH-HHHHHHHHHHHHHHCCCCCCCEECCCCCCH----HHHHHHHH
T ss_conf ----------3899999998593-----9----9999-999999999999982999995003211379----99999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHC---CC----CCCCCCC--C-CCCCH-HHHHHHHH-HHHHHHH
Q ss_conf 99974985113426755565420002478156510110---22----2222210--2-46521-35688899-9999752
Q gi|254780285|r 279 NLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMV---GD----DVDRPLL--K-SDGSY-TYFAADLA-YFKCKYE 346 (586)
Q Consensus 279 ~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~----~~d~vl~--r-sDGt~-~Y~t~DiA-~~~~k~e 346 (586)
+|.++|++|+.... ..|.+.|+.+.+ |. +.+..+. . ..+.. .+.-+|-+ .++||..
T Consensus 114 ~Li~~G~AY~~~~~------------~~G~VYFdv~~~~~YG~ls~~~~~~~~~~~~e~~~~~~~~~Kr~p~DFaLWK~~ 181 (384)
T PRK12418 114 KLLASGAAYVVDDP------------EYGDVYFSVDATPQFGYESGYDRETMLELFAERGGDPDRPGKRDPLDALLWRAA 181 (384)
T ss_pred HHHHCCCEEECCCC------------CCCCEEEEECCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCC
T ss_conf 99967955775688------------888689995242211450159989998775331577543357886660355757
Q ss_pred CC---------------------------CCCCCCCCCC-------CHHHHHHHHHHHHHHHCCC-CCCCEEEECCHHHC
Q ss_conf 25---------------------------5543336777-------6136899999999972266-34511531101101
Q gi|254780285|r 347 RG---------------------------FDNMIYVMGS-------DHSGYVKRLEAVAAAVSEK-KAQINVLLCELVRL 391 (586)
Q Consensus 347 ~~---------------------------~d~~iyVv~~-------~Q~~h~~~v~~~~~~lg~~-~~~~~~~~~~~v~l 391 (586)
+. +...|++=+- -|.....|...+ .|.. .++. -++.+++.+
T Consensus 182 ~~gEp~W~SPWG~GRPGWHIECSaMs~~~LG~~~DIHgGG~DL~FPHHENEiAQsea~---~g~~~~a~y-W~H~g~l~~ 257 (384)
T PRK12418 182 RPGEPSWPSPFGPGRPGWHIECSAIALNRLGSGFDIQGGGSDLIFPHHEFSAAHAEAA---TGERRFARH-YVHAGMIGL 257 (384)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHH---HCCCHHHHH-HHHHCEEEE
T ss_conf 7778887699888088430565899998759976784686256588835499999986---589748788-860042668
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2211000001223302456777776-321123455542000123334477765320244367888888889999875332
Q gi|254780285|r 392 YRDGMPIKMSKRAGDFITLRHVVDE-VGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKD 470 (586)
Q Consensus 392 ~~dg~~~kmstR~G~~v~l~dll~e-vg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~ 470 (586)
+|+ |||+-.||++++.|++.+ ..-.++||++|+..-.+.++|+++.+.. .+. + ..|..+-++...
T Consensus 258 --~ge--KMSKSlGN~i~i~dl~~~g~~p~~~R~~lL~~hYR~~l~fs~~~l~~-A~~-~-------l~r~~~a~~~~~- 323 (384)
T PRK12418 258 --DGE--KMSKSRGNLVFVSRLRAAGVDPAAIRLALLAGHYRSDREWTDAVLAE-AEA-R-------LARWRAATALPA- 323 (384)
T ss_pred --CCE--ECCCCCCCEEEHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH-HHH-H-------HHHHHHHHHCCC-
T ss_conf --886--74566887146999986389879999999705679976889999999-999-9-------999999871667-
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 00246832234223552114998999999998421899999998528127999999999988999
Q gi|254780285|r 471 IFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGH 535 (586)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~f 535 (586)
..+.+ .+ +.. +...-..++.-..-..-+++|++.-|++
T Consensus 324 --------------------~~~~~-~~---~~~---~~~al~DDlNTP~Ala~l~~l~~~~n~~ 361 (384)
T PRK12418 324 --------------------GPDAA-DV---VAR---VREYLADDLDTPGALAAVDGWATDALEY 361 (384)
T ss_pred --------------------CCCHH-HH---HHH---HHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf --------------------88668-89---999---9999874265589999999999999732
No 45
>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products , as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=99.00 E-value=3.4e-08 Score=76.41 Aligned_cols=249 Identities=18% Similarity=0.188 Sum_probs=158.8
Q ss_pred CCEECHHHHHH--CCHHHHHHHHHHHH-HCCCCC--CCCCCCCCCCCCCCC---------CCCCCCEEEEHHHCCCCCCC
Q ss_conf 10001588730--10457999999999-749851--134267555654200---------02478156510110222222
Q gi|254780285|r 257 DIFISEDDFHR--GDPSPIRDIIDNLA-RQGYVY--EGILPPPKSKTTQKC---------DMDRKQLLFRSTMVGDDVDR 322 (586)
Q Consensus 257 D~~~~Es~~~~--~~~~~i~~~i~~l~-~~g~~~--e~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~d~ 322 (586)
=+|..|+.=.. ...+.|+++.+.++ .+|.-. +..-.+..++..... ..|-=.+||++
T Consensus 528 P~w~~e~~~~~~l~~~gsi~el~~~~~~~~G~~~w~~d~~~~~~d~~~~~~~~g~~~y~r~~DvlDVWFDS--------- 598 (938)
T TIGR00392 528 PVWYCEDTGEPVLIVVGSIEELEELIEVEKGIDAWFEDLHKDLLDKITLESGSGGGEYRRVPDVLDVWFDS--------- 598 (938)
T ss_pred EEEEECCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECEEEEEECCC---------
T ss_conf 06886678832677604089999999987256632223444457741345889984258712155451140---------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHC--CCCCCCCCCCCCH-HHHHHHHHHHHHHHC--CCCCCCEEEECCHHHCCCCCCC
Q ss_conf 2102465213568889999997522--5554333677761-368999999999722--6634511531101101221100
Q gi|254780285|r 323 PLLKSDGSYTYFAADLAYFKCKYER--GFDNMIYVMGSDH-SGYVKRLEAVAAAVS--EKKAQINVLLCELVRLYRDGMP 397 (586)
Q Consensus 323 vl~rsDGt~~Y~t~DiA~~~~k~e~--~~d~~iyVv~~~Q-~~h~~~v~~~~~~lg--~~~~~~~~~~~~~v~l~~dg~~ 397 (586)
|++=|+..+--.--.++.. .+| .|.=|+|| .++|.....+.-.+. ...+.-.++..||+ |-++|.
T Consensus 599 ------Gs~~~A~~~~~~~~~~~~~~~pAD--~i~EG~DQ~RGWFySsl~~~~~~~nv~~~PYK~Vi~hGF~-LDe~G~- 668 (938)
T TIGR00392 599 ------GSMPYAVLHYPFENEKFKEVFPAD--FILEGSDQTRGWFYSSLLIGVALFNVGKAPYKNVITHGFT-LDEKGR- 668 (938)
T ss_pred ------CHHHHHHHHCCCCCHHHCCCCCCE--EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCEE-ECCCCC-
T ss_conf ------011799863232100103578302--6860335553277999999999870788543634531548-857785-
Q ss_pred CCCCCCCCCHHHHHHHHH--------HHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HH--HH
Q ss_conf 000122330245677777--------63211234555420--0012333447776532024436788888888-99--99
Q gi|254780285|r 398 IKMSKRAGDFITLRHVVD--------EVGSDSVRFMMLWR--KNSELLDFDFCKVKEQSKENPVFYVQYAYAR-CR--SI 464 (586)
Q Consensus 398 ~kmstR~G~~v~l~dll~--------evg~~aiky~~L~~--~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR-~~--SI 464 (586)
|||++.||+|.-.++++ +.|.|++|+.+++. +...+..|+++-+.... . ...=+.+.-.| +. +.
T Consensus 669 -KMSKSlGNvV~P~~v~~G~~N~~~P~yGAD~LRlyv~~~P~~~~~Dl~~~~~~~~~v~-~-~~~~~~~N~~~Fl~~Yan 745 (938)
T TIGR00392 669 -KMSKSLGNVVDPEKVINGDENLKLPKYGADILRLYVASSPSDYWEDLRFSDEILKQVA-E-KYRKIRWNTYRFLLTYAN 745 (938)
T ss_pred -CCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCHHCCCCCHHHHHHHH-H-HHHHHHHHHHHHHHHHHH
T ss_conf -4453258703859970884335887533048777788468740002200668999999-9-876889999999999887
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 8753320024683223422355211499899999999842189999999852812799999999998-8999870
Q gi|254780285|r 465 FRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASV-FHGHWSH 538 (586)
Q Consensus 465 lrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~-Fn~fY~~ 538 (586)
|.+.......+ ....+.+..+=++-.|-.+-+.|.++.+.+.+|...+=|.+-+.. +|+||=.
T Consensus 746 L~~f~p~~~~~-----------~~~~~~~~Drw~L~~l~~l~~~v~~~~e~Y~f~~~~~~l~~F~~~~LS~wY~~ 809 (938)
T TIGR00392 746 LDKFDPEEKAV-----------AVEKFRELDRWILSRLNSLVEEVNEALEKYNFHKVLRALQDFIVEELSNWYIR 809 (938)
T ss_pred HHCCCCCCCCC-----------CHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 60778730023-----------11203011399999999999999998626324678888987631200045666
No 46
>TIGR00435 cysS cysteinyl-tRNA synthetase; InterPro: IPR002308 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=98.98 E-value=1.7e-07 Score=71.45 Aligned_cols=421 Identities=21% Similarity=0.250 Sum_probs=198.0
Q ss_pred CCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCEEECCCCCCHHHHHH-------H-
Q ss_conf 622138876565541000223443224411777778568999999998-5066641020147753145556-------7-
Q gi|254780285|r 108 SGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMA-FSGYEVTREYYINDAGAQINTL-------A- 178 (586)
Q Consensus 108 ~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~-~~G~~V~r~nyvgD~G~Q~~~l-------i- 178 (586)
+++.| .+...+++|-+=-+.|=+==-.|+||.|++|.+|.+.|+|+ ++||+|.=.-=+=|-|---|.| |
T Consensus 10 ~K~~F--~pl~~~~~V~~Y~CGpTVYd~~HiGhaR~~i~fD~~~R~L~d~~GY~V~yV~NiTDIGhltGdlddGDDKIIk 87 (660)
T TIGR00435 10 QKEEF--EPLVQGKKVKMYVCGPTVYDYAHIGHARTAIVFDVLRRYLEDYLGYEVQYVQNITDIGHLTGDLDDGDDKIIK 87 (660)
T ss_pred CCCCC--CCCCCCCEEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEECCCCCCCCCCCCHHHHH
T ss_conf 63524--1124885667997073176210303466302578889999887588678886431200001677775048999
Q ss_pred ---------H-------------------HHHHHHHHHCCCCCCCCC--H-----------------H------------
Q ss_conf ---------8-------------------987532221024500066--0-----------------1------------
Q gi|254780285|r 179 ---------L-------------------SVFWRYQQALYNNDSDLP--E-----------------G------------ 199 (586)
Q Consensus 179 ---------~-------------------~~~~~~~~~~~~~~~~~~--e-----------------~------------ 199 (586)
. +++....+.......++. | .
T Consensus 88 ~A~~~~~~~~~~kendtkfnatvvdkvktalfqyinknftiqGseiktieefetWlsnadtetlklenPkfP~hvtavqn 167 (660)
T TIGR00435 88 RAREEGETVEEVKENDTKFNATVVDKVKTALFQYINKNFTIQGSEIKTIEEFETWLSNADTETLKLENPKFPMHVTAVQN 167 (660)
T ss_pred HHHHCCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHCCCCCHHCCCCCCCCCHHHHHHH
T ss_conf 98751564788740122000256778899999987520011252000367777765203310100137888521677888
Q ss_pred ----HCCCCCH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHCCCCCCC-EECHHHHHHC
Q ss_conf ----1024100-00127888887576413430237999999978998875455-----58870875210-0015887301
Q gi|254780285|r 200 ----YYPGVYL-KHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRD-----DLKALNIQHDI-FISEDDFHRG 268 (586)
Q Consensus 200 ----~~~~~y~-~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-----~l~~l~i~fD~-~~~Es~~~~~ 268 (586)
..+|... .+.+-|..+...--+++ .+.-..+..-..+..++.+.+ ++..|||..=- ..-=|+..
T Consensus 168 aiesitkGds~daevafekvkdvtvPlld---kelGstisnPe~~~~i~aY~~qkfndD~~aLNv~~p~~~pr~te~i-- 242 (660)
T TIGR00435 168 AIESITKGDSMDAEVAFEKVKDVTVPLLD---KELGSTISNPESERFIEAYFEQKFNDDLEALNVLPPDLEPRVTEHI-- 242 (660)
T ss_pred HHHHHHCCCCCHHHHHHHHHHHCCCCCHH---HHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCC--
T ss_conf 88764236630256766644001021010---1113432560168899999865578888742873884016631124--
Q ss_pred CHHHHHHHHHHHHHCCCCCCCC-CC----CCCCC---CCCCCCCC---CCCEEEEHHHCCCCCCCCCC-CCCCCHHHHHH
Q ss_conf 0457999999999749851134-26----75556---54200024---78156510110222222210-24652135688
Q gi|254780285|r 269 DPSPIRDIIDNLARQGYVYEGI-LP----PPKSK---TTQKCDMD---RKQLLFRSTMVGDDVDRPLL-KSDGSYTYFAA 336 (586)
Q Consensus 269 ~~~~i~~~i~~l~~~g~~~e~~-~~----~~~~~---~~~~~~~~---~~~~~~~~~~~g~~~d~vl~-rsDGt~~Y~t~ 336 (586)
..|.+++++|.+||++|... +. .+..+ ....-.+. ...+ ..-..|.. .+|-. +.||.-==-..
T Consensus 243 --d~iie~i~~L~~KgyAY~~~~GdVYF~v~~f~ksPnh~YG~Ls~Wn~~~~--~~l~~g~~-~~v~~~~P~Ga~Kr~~~ 317 (660)
T TIGR00435 243 --DEIIEFIEQLIEKGYAYVSDNGDVYFDVSKFKKSPNHDYGKLSGWNKQSL--DELEAGAR-VRVDEAKPDGAKKRNKL 317 (660)
T ss_pred --CHHHHHHHHHHHCCCEEEECCCCEEEECCCCCCCCCCCCCCCCCCCCCCH--HHHHCCCC-CCCCCCCCCCCCCCCCC
T ss_conf --31478999998689205306886465316778888887643267555544--66625786-45523588753356776
Q ss_pred HHHHHHHHHHCCCC--CCCC--CCCCCHHH-HHHHHHHHHHHH----------------------------------C-C
Q ss_conf 89999997522555--4333--67776136-899999999972----------------------------------2-6
Q gi|254780285|r 337 DLAYFKCKYERGFD--NMIY--VMGSDHSG-YVKRLEAVAAAV----------------------------------S-E 376 (586)
Q Consensus 337 DiA~~~~k~e~~~d--~~iy--Vv~~~Q~~-h~~~v~~~~~~l----------------------------------g-~ 376 (586)
|= .+||..+..+ .+-+ -||..--+ |..=-+-+.+.| | -
T Consensus 318 DF--vLWK~~k~g~~~E~~W~SPWG~GRPGWHiECS~M~~~~LgltntP~~~DIH~GG~DL~FPHHENE~Aqs~a~~gn~ 395 (660)
T TIGR00435 318 DF--VLWKSAKEGKDQEPKWDSPWGKGRPGWHIECSAMVDKYLGLTNTPDQIDIHGGGVDLIFPHHENEIAQSEALFGNK 395 (660)
T ss_pred CH--HHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 50--2220067887777431777888888158999999997513567865430134887788878778999999872898
Q ss_pred CCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCC--CCHHHH
Q ss_conf 634511531101101221100000122330245677777-63211234555420001233344777653202--443678
Q gi|254780285|r 377 KKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVD-EVGSDSVRFMMLWRKNSELLDFDFCKVKEQSK--ENPVFY 453 (586)
Q Consensus 377 ~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~-evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~--~nt~~Y 453 (586)
+..+ .-+|-|||+. |+. |||+--||++++.|+++ ..---++||++|+..-.+.++|+-+.+.. .+ ++..
T Consensus 396 ~~~~-yW~H~G~~~i--d~e--KMSKSLgNF~~v~D~L~q~~d~~~lR~~~l~~HYr~pLdf~e~~l~~-aksfe~~~-- 467 (660)
T TIGR00435 396 QLAK-YWLHNGFLMI--DNE--KMSKSLGNFITVRDVLKQNYDPEVLRYLLLSVHYRSPLDFSEELLEA-AKSFENAL-- 467 (660)
T ss_pred CEEE-EEEECCEEEE--CCC--CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHH-HHHHHHHH--
T ss_conf 5689-9985177897--672--16515556888886874276899999998765531456747889999-98899999--
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH---HHH-HHHHHCCCHHHHHHHHHHH
Q ss_conf 888888899998753320024683223422355211499899999999842189---999-9998528127999999999
Q gi|254780285|r 454 VQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPR---VIE-NATIAQEPYKLAFYLYDLA 529 (586)
Q Consensus 454 iqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~---vi~-~a~~~~~P~~l~~Yl~~La 529 (586)
-|+.+-++......... ........+ ....|.+.. ..|.| -|. .-..++.-.-=..-|++|+
T Consensus 468 -----~~l~~~l~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~---~~F~Eseskvhsa~~dDlN~a~Al~vL~el~ 533 (660)
T TIGR00435 468 -----ERLYKALRNLDTDLAYS--KEFGENKDP----KNVDEKEFE---AAFEESESKVHSAMDDDLNTANALAVLFELA 533 (660)
T ss_pred -----HHHHHHHHHHHHHCCCC--CCCCCCCCC----CCCHHHHHH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf -----99999999875310342--223424356----642256578---6643203577888750578068999999999
Q ss_pred HHHHH---HHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC----CCCC
Q ss_conf 98899---9870686666654357878999999999999999999987315----8798
Q gi|254780285|r 530 SVFHG---HWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNII----GVES 581 (586)
Q Consensus 530 ~~Fn~---fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LL----GI~~ 581 (586)
+.-|+ |+.. ..+++.+...--..|...|.+| |++-
T Consensus 534 ~~~N~~~~l~~~-----------------~~~~~~~~~~~l~~L~~~l~~~~rii~~~~ 575 (660)
T TIGR00435 534 KSINKKLDLTEV-----------------SKADAALLIEALIELESVLGLLLRIIGLPS 575 (660)
T ss_pred HHHCCCCCCCCC-----------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 984001576512-----------------477899999999999999999999854887
No 47
>KOG0436 consensus
Probab=98.96 E-value=8.7e-07 Score=66.55 Aligned_cols=133 Identities=17% Similarity=0.174 Sum_probs=92.7
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH--HHHHHH
Q ss_conf 2110000012233024567777763211234555420-0012333447776532024436788888888999--987533
Q gi|254780285|r 393 RDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR-KNSELLDFDFCKVKEQSKENPVFYVQYAYARCRS--IFRQAK 469 (586)
Q Consensus 393 ~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~-~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~S--IlrKa~ 469 (586)
.+|. |||+--||+|.-.++++.-|++++||++|++ ..+.+-+|+.++....-...-+--+=----|||+ ++.+..
T Consensus 340 ~ngm--KMsKSLGNvvdP~~l~~kygvD~vRyflLr~~~l~~Dgdy~eekl~k~~n~~La~~lG~LlnRc~gkkln~sn~ 417 (578)
T KOG0436 340 KNGM--KMSKSLGNVVDPFELVQKYGVDAVRYFLLREGELGNDGDYSEEKLIKIVNAHLANTLGNLLNRCLGKKLNISNC 417 (578)
T ss_pred ECCE--ECCHHHCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCC
T ss_conf 4222--10212046468899998838441566755535207888812999999999999999989988875213570015
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 2002468322342235521149989-999999984218999999985281279999999999889998706
Q gi|254780285|r 470 DIFPDLDFDLFPRNVIPQESEFDTS-ELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHG 539 (586)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~-E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~ 539 (586)
+... . ..+..... --.|+..+...|++..+.+..+.-..+|+-+.+..+.-|.|.+..
T Consensus 418 e~~l----------~--~~s~~v~ae~~~lv~~v~kl~ev~a~~~d~f~~~~ale~V~si~n~~ntlvq~~ 476 (578)
T KOG0436 418 ESTL----------V--VDSPTVAAEGEPLVDTVEKLPEVAATNYDNFSLYSALEAVLSIGNAGNTLVQQR 476 (578)
T ss_pred CCCC----------C--CCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 6300----------2--477425531452899999758999854033309999999999997531566506
No 48
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.93 E-value=2e-06 Score=64.06 Aligned_cols=268 Identities=17% Similarity=0.240 Sum_probs=135.7
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC-CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 100022344322441177777856899999999850-6664102014775314555678987532221024500066011
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFS-GYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~-G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
.||++ |.--|.+..|||++|-.+.++.|+|-|+.. |++|.-.+..+|+-.- .+ -...+|.
T Consensus 30 ~vv~~-tG~~pSG~~HiG~~~Ev~~~~~V~~al~~~~g~~~~~i~~~Dd~D~l------------Rk----vp~~~p~-- 90 (513)
T PRK00750 30 EVLFE-TGYGPSGLPHIGTFGEVARTTMVRRALRDLTGIKTRLIYFSDDMDGL------------RK----VPDNVPN-- 90 (513)
T ss_pred EEEEE-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCC------------CC----CCCCCCC--
T ss_conf 39993-68689988623045226669999999998459966899985177654------------34----6889998--
Q ss_pred CCCCCHHHHHHHHHHHH-HHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCH--HHHHHH
Q ss_conf 02410000127888887-5764134302-3799999997899887545558870875210001588730104--579999
Q gi|254780285|r 201 YPGVYLKHVGKELADKY-SSELLNFPEE-KWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDP--SPIRDI 276 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~-~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~--~~i~~~ 276 (586)
.+..+++ ..-+...++- +.-. .+ .+.....+.+.|+.+|+.++... -++.|+.+. ..+..+
T Consensus 91 ----------~e~~~~~lg~Pl~~iPdP~g~~~---Sy-a~h~~~~~~~~l~~~gi~~e~~s-~te~Y~sG~f~~~i~~~ 155 (513)
T PRK00750 91 ----------QEMLAEHLGKPLTSVPDPFGTHE---SY-AEHNNARLREFLDKFGFEYEFIS-ATECYKSGRFDEALLKA 155 (513)
T ss_pred ----------HHHHHHHCCCCCCCCCCCCCCCC---CH-HHHHHHHHHHHHHHCCCCEEEEE-HHHHHHCCCHHHHHHHH
T ss_conf ----------49999874996640799888757---69-99999999999998398339976-78766448669999999
Q ss_pred ----------HHHHHHCCCC--CCCCCCCCC--CCC--C--CCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ----------9999974985--113426755--565--4--200024781565101102222222102465213568889
Q gi|254780285|r 277 ----------IDNLARQGYV--YEGILPPPK--SKT--T--QKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADL 338 (586)
Q Consensus 277 ----------i~~l~~~g~~--~e~~~~~~~--~~~--~--~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~Di 338 (586)
+........- |--....+. .+. . ...+.+.+.+.+.. ..|. .|+..+. ..-
T Consensus 156 l~~~~~I~~Il~~~~~~~~~~~~~P~~piC~~cGkv~~t~v~~~d~~~~~v~y~~-~cG~---------~~~~~~~-~g~ 224 (513)
T PRK00750 156 LEKYDEIMAILLPTLGEERQATYSPFLPICPKCGKVLQVPVISVDADAGTITYDD-ECGH---------EGEVPVT-GGH 224 (513)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCEEEEEC-CCCC---------EEEECCC-CCC
T ss_conf 9859999999998438666787147787618889552046899977998899984-9998---------7876366-885
Q ss_pred HHHHHHHHCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 9999975225554333-----67776136899999999972266345115311011012211000001223302456777
Q gi|254780285|r 339 AYFKCKYERGFDNMIY-----VMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHV 413 (586)
Q Consensus 339 A~~~~k~e~~~d~~iy-----Vv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dl 413 (586)
.=..||.+-..-|.+- --|-||..-+..-..+++.+|+..+ ..+.|+++ |.+.| .|||+-+||+++++|.
T Consensus 225 ~KL~WrvDW~mRW~~~~Vd~Ep~GKDh~~S~~~~~~I~~i~g~~pP--~~~~YE~f-Ld~~G--~KmSsSkGngit~~ew 299 (513)
T PRK00750 225 VKLQWKVDWPMRWAALGVDFEPAGKDHISSYDTSSRICEILGGEPP--EGFMYELF-LDGKG--QKISKSKGNGISIEDW 299 (513)
T ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC--CCCCEEEE-ECCCC--CEECCCCCCCCCHHHH
T ss_conf 4346625655441110643034651121207679999998389999--99872279-83798--6630568972389999
Q ss_pred HHHHHHHH-HHHHHHHHCCHHHHHHHH
Q ss_conf 77632112-345554200012333447
Q gi|254780285|r 414 VDEVGSDS-VRFMMLWRKNSELLDFDF 439 (586)
Q Consensus 414 l~evg~~a-iky~~L~~~~~~~~~Fd~ 439 (586)
++-+-..+ ++|...+.++.+.+.||.
T Consensus 300 L~~~~PEsl~rfm~~~pkpaK~l~fd~ 326 (513)
T PRK00750 300 LEYAPPESLARFMYARPKPAKRLYFDV 326 (513)
T ss_pred HHHCCHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 975599999999971889884015656
No 49
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.4e-07 Score=72.22 Aligned_cols=224 Identities=21% Similarity=0.232 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCC
Q ss_conf 52135688899999975225554---3336777613-6899999999972266345115311011012211000001223
Q gi|254780285|r 329 GSYTYFAADLAYFKCKYERGFDN---MIYVMGSDHS-GYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRA 404 (586)
Q Consensus 329 Gt~~Y~t~DiA~~~~k~e~~~d~---~iyVv~~~Q~-~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~ 404 (586)
|++-|++.. ... +..+.. =.|.=|+||. ++|..+..+.-.+-...+...++..||+ |-++|+ |||++.
T Consensus 536 Gs~~~a~~~-~~~----~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfv-lDe~Gr--KMSKSl 607 (933)
T COG0060 536 GSTPYAVLH-PRE----NLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFV-LDEKGR--KMSKSL 607 (933)
T ss_pred CCCCCCCCC-CCC----CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCE-ECCCCC--CCCCCC
T ss_conf 897111107-754----446765557579970665522689999999997288507877632617-888888--765557
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 30245677777632112345554200012333447776532024436788888888999987533200246832234223
Q gi|254780285|r 405 GDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNV 484 (586)
Q Consensus 405 G~~v~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~ 484 (586)
||+|.-.|++++.|.+++|...++.+...+..|+++- +..... +|-|+...+|=.-.-..++++... .
T Consensus 608 GN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~i-l~~~~~--------~~r~irNt~rF~l~nl~~fdp~~~---~ 675 (933)
T COG0060 608 GNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEI-LKQVRE--------VYRKIRNTYRFLLGNLDDFDPKKD---A 675 (933)
T ss_pred CCCCCHHHHHHHHCCHHEEEEEEECCCHHCCCCCHHH-HHHHHH--------HHHHHHHHHHHHHHHCCCCCCCCC---C
T ss_conf 8818989998762763404665615823032027889-999999--------999999999999885058994213---3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 552114998999999998421899999998528127999999999-9889998706866666543578789999999999
Q gi|254780285|r 485 IPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLA-SVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLV 563 (586)
Q Consensus 485 ~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La-~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~ 563 (586)
+. ...+.+.++-++-.+..+-..+.+|++.+.-|.+++-+.+.+ ...|+||-.- .-..+-.-..++.+ |.+-.
T Consensus 676 ~~-~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~-~kdr~y~~~~~s~~----rraa~ 749 (933)
T COG0060 676 VL-PEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDI-IKDRLYTEAADSPD----RRAAQ 749 (933)
T ss_pred CC-HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCHH----HHHHH
T ss_conf 51-44423217999999999999999999846799999999999885665889888-78876404799988----99999
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999873158
Q gi|254780285|r 564 HAVASIINSGLNIIG 578 (586)
Q Consensus 564 ~a~~~vL~~~L~LLG 578 (586)
.....+|.....+|.
T Consensus 750 ~~Ly~il~~l~~~lA 764 (933)
T COG0060 750 TTLYHILKALVRLLA 764 (933)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999971
No 50
>cd00802 class_I_aaRS_core Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.83 E-value=1.2e-08 Score=79.70 Aligned_cols=48 Identities=38% Similarity=0.542 Sum_probs=43.7
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 00223443224411777778568999999998506664102014775314555
Q gi|254780285|r 124 NIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINT 176 (586)
Q Consensus 124 vVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~ 176 (586)
+|.++.|+|+++|||||+|++++.+.++|-. +|.-...++|+|+++..
T Consensus 1 ~i~~~~p~ptG~lHiGh~~~~~~~~~~ar~~-----~~~~~~~idd~~~~~~~ 48 (142)
T cd00802 1 VITRPGPYPTGPLHIGHARTALLNDVLARYG-----NVLFILGIDDTGLPIED 48 (142)
T ss_pred CEECCCCCCCCCCCHHHHHHHHHHHHHHHHC-----CCEEEEEECCCCCCCCC
T ss_conf 9141488989964188999999999999981-----99899986579920011
No 51
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=98.81 E-value=6.2e-08 Score=74.60 Aligned_cols=275 Identities=19% Similarity=0.324 Sum_probs=142.7
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 41000223443224411777778568999999998506664102014775314555678987532221024500066011
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
.+++|+ |.--|.+..|||++|-.+.++.|+|-|+..|.+|.=....+|+-. +.+-...+|+.
T Consensus 19 ~~~v~~-tG~~PSG~~HIGnfrEv~~~~~V~~al~~~g~~~~~i~~~DD~D~----------------lRKVP~nlp~~- 80 (355)
T pfam01921 19 GEILVE-TGIGPSGLPHIGNFREVLRTDAVRRALRKRGFETRLIYFSDDMDG----------------LRKVPDNVPNS- 80 (355)
T ss_pred CCEEEE-CCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC----------------CCCCCCCCCCH-
T ss_conf 858995-266899886421560179999999999974987699998215651----------------01378899998-
Q ss_pred CCCCCHHHHHHHHHHHHH-HHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCH--------
Q ss_conf 024100001278888875-764134302-3799999997899887545558870875210001588730104--------
Q gi|254780285|r 201 YPGVYLKHVGKELADKYS-SELLNFPEE-KWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDP-------- 270 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~-~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~-------- 270 (586)
+..+++. .-+...++- +..+ .+ .+.....+.+.|..+|+.++... -++.|+.+.
T Consensus 81 -----------e~~~~ylg~Pl~~IPdP~g~~~---Sy-a~h~~~~~~~~L~~~gi~~ef~s-~te~Y~sG~~~~~i~~~ 144 (355)
T pfam01921 81 -----------EMLEKYLGKPLTRIPDPFGCHE---SY-AEHFNAPFLEFLDRFGIEYEFIS-ATELYKSGLYDEAILIA 144 (355)
T ss_pred -----------HHHHHCCCCCCEECCCCCCCCC---CH-HHHHHHHHHHHHHHCCCEEEEEE-HHHHHHCCCHHHHHHHH
T ss_conf -----------9998736975213479888745---59-99999999999998398289986-78855246559999999
Q ss_pred ----HHHHHHHHHHHHCCCC--CCCCCCC--CCCCC--CCC--CCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ----5799999999974985--1134267--55565--420--0024781565101102222222102465213568889
Q gi|254780285|r 271 ----SPIRDIIDNLARQGYV--YEGILPP--PKSKT--TQK--CDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADL 338 (586)
Q Consensus 271 ----~~i~~~i~~l~~~g~~--~e~~~~~--~~~~~--~~~--~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~Di 338 (586)
+.|.+++.....+... |--.... ...+. ... ++.+.+.+.+.. ..|......+.+.+
T Consensus 145 l~~~~~I~~Il~~~~g~e~~~~y~Pf~piC~~cGrv~~t~v~~~d~~~~~v~Y~c-~cG~~~~~~~~~g~---------- 213 (355)
T pfam01921 145 LENRDEIMEILLPYRGEERQETYSPFLPICPKCGRVLTTPVVEYDAEGGTITYRC-ECGHEGEVDITGGN---------- 213 (355)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCEEEEEC-CCCCEEEEEECCCC----------
T ss_conf 9858999999998528666887368988858889372568999967898799986-99988998411576----------
Q ss_pred HHHHHHHHCCCCCCCC-C----CCCCHHH---HHHHHHHHH-HHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 9999975225554333-6----7776136---899999999-97226634511531101101221100000122330245
Q gi|254780285|r 339 AYFKCKYERGFDNMIY-V----MGSDHSG---YVKRLEAVA-AAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFIT 409 (586)
Q Consensus 339 A~~~~k~e~~~d~~iy-V----v~~~Q~~---h~~~v~~~~-~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~ 409 (586)
.=..||.+-..-+.+- | -|-||.. -+..-..++ +.+|+..+ ..+.|+++.+ ++|. |||+-+||+++
T Consensus 214 ~KL~WkvDW~mRW~~lgVdfEp~GKDh~~~GGS~~~~~~I~~~i~g~~pP--~~~~YE~~~~-kgg~--KmSsSkGn~is 288 (355)
T pfam01921 214 GKLQWKVDWAMRWAALGVDFEPFGKDHAAPGGSYDTSSRIAREILGGEPP--EPFPYELILL-KGGG--KMSSSKGNGIT 288 (355)
T ss_pred CCCCCCCCCHHEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC--CCCCEEEEEE-CCCC--CCCCCCCCCCC
T ss_conf 66787566333057856348625743246787622289999997099999--9886578996-6997--10468898769
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 677777632112345554200012333447776532
Q gi|254780285|r 410 LRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQ 445 (586)
Q Consensus 410 l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~ 445 (586)
++|.++-.-..++||.+++.+|++.+.|+++.+..+
T Consensus 289 ~~e~L~~~~pE~Lr~l~~~~~P~~a~~l~fd~ip~~ 324 (355)
T pfam01921 289 IEEWLEYAPPESLRFLMFRVKPKKAKRLDFDVIPKL 324 (355)
T ss_pred HHHHHHHCCHHHHHHHHCCCCCCCCEEECCCHHHHH
T ss_conf 999998669999999980428884512073044668
No 52
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=8.4e-08 Score=73.70 Aligned_cols=273 Identities=18% Similarity=0.294 Sum_probs=144.5
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 41000223443224411777778568999999998506664102014775314555678987532221024500066011
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
..++|+ |..-|.+..|||.+|-.+.||++.|-|+-.|++|.-++..+||-. +..-...+|+
T Consensus 19 ~~~~v~-tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~----------------lRkvp~~lp~-- 79 (521)
T COG1384 19 DEYVVA-TGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP----------------LRKVPRNLPD-- 79 (521)
T ss_pred CCEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC----------------CCCCCCCCCC--
T ss_conf 868983-476898873214289898999999999974886579998148751----------------0127999998--
Q ss_pred CCCCCHHHHHHHHHHHHHH-HHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHH-CCH-------
Q ss_conf 0241000012788888757-6413430-23799999997899887545558870875210001588730-104-------
Q gi|254780285|r 201 YPGVYLKHVGKELADKYSS-ELLNFPE-EKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHR-GDP------- 270 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~~-~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~-~~~------- 270 (586)
.+..+++-. -+...++ .+.-. .+ .+..+..+.+.|.++|+....... |+.|. +..
T Consensus 80 ----------~~~~e~Ylg~Plt~IPdP~G~~~---Sy-a~hf~~~f~~~l~~~Gi~~E~~s~-se~Yk~G~~~~~i~~a 144 (521)
T COG1384 80 ----------PEELEQYLGMPLTEIPDPFGCCD---SY-AEHFLRPFEEFLDEFGIEVEFVSA-TELYKSGLYDEAIRIA 144 (521)
T ss_pred ----------HHHHHHHCCCCCCCCCCCCCCCC---HH-HHHHHHHHHHHHHHCCCCEEEEEH-HHHHHCCCHHHHHHHH
T ss_conf ----------68999870996434899766533---59-999999999999864986499876-7756445589999999
Q ss_pred ----HHHHHHHHHHHHCCCCCCCCC--CCCCCCCCC------CCCCCCC-CEEEEHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ----579999999997498511342--675556542------0002478-156510110222222210246521356888
Q gi|254780285|r 271 ----SPIRDIIDNLARQGYVYEGIL--PPPKSKTTQ------KCDMDRK-QLLFRSTMVGDDVDRPLLKSDGSYTYFAAD 337 (586)
Q Consensus 271 ----~~i~~~i~~l~~~g~~~e~~~--~~~~~~~~~------~~~~~~~-~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~D 337 (586)
+.+.+++.+...+ ..+... -.|-+..+. ..+.+.. .+-++.. .|.+....++...|-
T Consensus 145 le~rdeI~~il~~~~~~--~~~e~~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce-~Gh~g~v~ir~g~~K------- 214 (521)
T COG1384 145 LERRDEIMEILNEYRGR--ELEEDWSPFMPICEKCGRILTTPVIEWDGEGTVEYRCE-CGHEGEVDIRGGEGK------- 214 (521)
T ss_pred HHHHHHHHHHHHHHCCC--CCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEEEC-CCCCCEEECCCCCCC-------
T ss_conf 86579999999985187--66677230222565558703068899637844999866-886104622336764-------
Q ss_pred HHHHHHHHHCCCCCCCCCC-----CCCHH---HHHHHHHHHHH-HHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 9999997522555433367-----77613---68999999999-722663451153110110122110000012233024
Q gi|254780285|r 338 LAYFKCKYERGFDNMIYVM-----GSDHS---GYVKRLEAVAA-AVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFI 408 (586)
Q Consensus 338 iA~~~~k~e~~~d~~iyVv-----~~~Q~---~h~~~v~~~~~-~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v 408 (586)
..||.+-..-|..-=| |-||. +-+.....+++ .+|++.+ ..+.|+++.|.. ..|||+-+|++|
T Consensus 215 ---L~WRvdWp~RW~~lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP--~~~~YE~i~lkg---~~~mSsSkG~~i 286 (521)
T COG1384 215 ---LPWRVDWPMRWAALGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPP--VPFVYEWILLKG---GGKMSSSKGNVI 286 (521)
T ss_pred ---CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC--CCCCEEEEEECC---CCCCCCCCCCEE
T ss_conf ---435767500100008310357853134567637899999986499999--777558898548---866556878578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHH
Q ss_conf 567777763211234555420001233344777-6532
Q gi|254780285|r 409 TLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCK-VKEQ 445 (586)
Q Consensus 409 ~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~-~l~~ 445 (586)
+++|.++-.-...+||.+.+.+|++.+.||++. ++++
T Consensus 287 ~~~dwlev~~pE~lry~~~r~kP~r~~~~d~~~~il~l 324 (521)
T COG1384 287 SLSDWLEVAPPEVLRYLIARTKPNRHIDFDFDLGILKL 324 (521)
T ss_pred CHHHHHHHCCHHHEEEEEEECCCCCCEECCCCCCHHHH
T ss_conf 59999875398473323540588744331788774477
No 53
>KOG2007 consensus
Probab=98.76 E-value=3.2e-05 Score=55.58 Aligned_cols=351 Identities=20% Similarity=0.258 Sum_probs=172.9
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH-HCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 5541000223443224411777778568999999998-506664102014775314555678987532221024500066
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMA-FSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~-~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
.+.+|-.=-+.|-+--.-||||.||.+-=|.|.|||+ +.||+|.-.--|-|.---
T Consensus 52 ~~~~v~wY~CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVDDK------------------------ 107 (586)
T KOG2007 52 NGNKVTWYICGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVDDK------------------------ 107 (586)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH------------------------
T ss_conf 88857899706801341221014666229999999999728636999435520489------------------------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCEECHHHHHHCCHHHHHH
Q ss_conf 01102410000127888887576-413430237999999978998875455588708752-1000158873010457999
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKYSSE-LLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQH-DIFISEDDFHRGDPSPIRD 275 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~f-D~~~~Es~~~~~~~~~i~~ 275 (586)
+..+..++ +.... ..++ +.++ .+-+.+.+++++||+-- |+...=|++.+ .|-.
T Consensus 108 ---------------II~RAr~~~m~e~~--~~l~--~~F~--~~e~eF~~DM~~LnvLpPtv~tRVSeyvp----~II~ 162 (586)
T KOG2007 108 ---------------IIKRARKEEMGEKP--LSLS--ERFC--YYEEEFLQDMAALNVLPPTVQTRVSEYVP----QIIK 162 (586)
T ss_pred ---------------HHHHHHHHHHCCCH--HHHH--HHHH--HHHHHHHHHHHHHCCCCCCCCCHHHHCHH----HHHH
T ss_conf ---------------99876552302341--2189--9888--88999998999808899853014542447----8999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCC------CCCCCCCCCHH----HHHHHHHHHHHHH
Q ss_conf 9999997498511342675556542000247815651011022222------22102465213----5688899999975
Q gi|254780285|r 276 IIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVD------RPLLKSDGSYT----YFAADLAYFKCKY 345 (586)
Q Consensus 276 ~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d------~vl~rsDGt~~----Y~t~DiA~~~~k~ 345 (586)
.++++..+|++|.. +|.+.|....++..-. ..+.-+.|... =-+.|- ++||-
T Consensus 163 fIqkIIdnG~aY~~----------------dGsVYFdv~kf~~~YgKL~G~~~~~~~gEg~l~ds~KR~p~DF--ALWKA 224 (586)
T KOG2007 163 FIQKIIDNGYAYAV----------------DGSVYFDVDKFPHSYGKLVGQRKNLQEGEGVLSDSRKRSPADF--ALWKA 224 (586)
T ss_pred HHHHHHHCCCEEEE----------------CCCEEEECCCCCCHHHHHCCCHHHCCCCCCCCCCCCCCCHHHH--HHHHH
T ss_conf 99999847853652----------------7808986444654135431715323467675443467880245--66640
Q ss_pred HCC-------------CCCCCC-------CCCC--------------CHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 225-------------554333-------6777--------------613689999999997226634511531101101
Q gi|254780285|r 346 ERG-------------FDNMIY-------VMGS--------------DHSGYVKRLEAVAAAVSEKKAQINVLLCELVRL 391 (586)
Q Consensus 346 e~~-------------~d~~iy-------Vv~~--------------~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l 391 (586)
-+. +-|-|- +.|+ -|.....|..+. .....+.++ .++.|.+..
T Consensus 225 sK~gEP~WeSPWG~GRPGWHIECSaMas~~lG~~lDIH~GG~DL~FPHHeNEiAQ~eA~--~~~~~wVnY-flHtGhL~i 301 (586)
T KOG2007 225 SKPGEPSWESPWGKGRPGWHIECSAMASAILGSQLDIHGGGIDLAFPHHENEIAQSEAA--FDDSQWVNY-FLHTGHLTI 301 (586)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHHH--HCCCCCCEE-EEECCEEEE
T ss_conf 48999888798889999745640777777626554201685043378752088888887--638755125-787573665
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH---HHC-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2211000001223302456777776321123455542000123334477765---320-244367888888889999875
Q gi|254780285|r 392 YRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVK---EQS-KENPVFYVQYAYARCRSIFRQ 467 (586)
Q Consensus 392 ~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l---~~~-~~nt~~YiqYa~aR~~SIlrK 467 (586)
+|. |||+--+|++++.++++.....+.|.+.|..+-.+.++|+-..|. .+. .-|.-+|.-=++-|...=
T Consensus 302 --~g~--KMSKSLkNFiTIke~Lk~~sp~qLRl~fl~~~wr~~ldYs~s~m~~a~q~e~~~~~ff~~~~al~~~~~~--- 374 (586)
T KOG2007 302 --NGE--KMSKSLKNFITIKEALKKYSPRQLRLAFLLHQWRSPLDYSDSTMEQALQLEKSLNNFFLDVKALLRGAKP--- 374 (586)
T ss_pred --CCC--HHHHHHCCCEEHHHHHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---
T ss_conf --111--0433320414399999763989999999987756767843889999999999999999999999825420---
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 332002468322342235521149989999999984218999999-9852812799999999998899987068666665
Q gi|254780285|r 468 AKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENA-TIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLR 546 (586)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a-~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~ 546 (586)
..-+.+.|.+|...+..-...+..| +.+..--.+...+-+|.+.-|.+-...
T Consensus 375 --------------------~~~~~~~e~~l~~~~~~t~~~vh~al~d~~dT~~v~~~~~~lvs~~N~~i~~~------- 427 (586)
T KOG2007 375 --------------------FEKLSEKEAELLEDFGKTQTAVHAALCDNFDTPRVMEAIRELVSQGNAYIRES------- 427 (586)
T ss_pred --------------------HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf --------------------21038589999986003789999998742451889999999873433888873-------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 43578789999999999999999999873158798
Q gi|254780285|r 547 FVQANNRKLTMMRLQLVHAVASIINSGLNIIGVES 581 (586)
Q Consensus 547 v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~ 581 (586)
. ..++-.|..++..-+...|.++|+..
T Consensus 428 ----~----~~~~~~~L~~I~~yIt~~l~ifG~~e 454 (586)
T KOG2007 428 ----G----ERPNSALLKAIASYITKLLKIFGLSE 454 (586)
T ss_pred ----C----CCCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf ----1----45425899999999999999807774
No 54
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.74 E-value=5.9e-08 Score=74.76 Aligned_cols=83 Identities=25% Similarity=0.315 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCC
Q ss_conf 21024652135688899999975225554333677761368999999999722663451153110110122110000012
Q gi|254780285|r 323 PLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSK 402 (586)
Q Consensus 323 vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmst 402 (586)
.+.+.||.++|. +|....=...+...+ |=|.|+-....+-..+.+.+|+..+.+.|+.. + +..+|+ |||+
T Consensus 96 L~~~gDG~PtY~---fA~vvDD~~~~IThv--iRg~D~~~~t~~q~~l~~~Lg~~~P~f~Hlpl--i-~~~~g~--kLSK 165 (239)
T cd00808 96 LLEEGDGFPTYH---FANVVDDHLMGITHV--IRGEEHLSSTPKQILLYEALGWEPPKFAHLPL--I-LNPDGK--KLSK 165 (239)
T ss_pred HHHCCCCCCCCC---CCCEECCCCCCCCEE--EECHHHHCCCHHHHHHHHHCCCCCCEEECCCC--E-ECCCCC--CCCC
T ss_conf 676599884234---351642654799889--71524105779999999964899980326624--2-689989--7767
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 23302456777776
Q gi|254780285|r 403 RAGDFITLRHVVDE 416 (586)
Q Consensus 403 R~G~~v~l~dll~e 416 (586)
|.|. +++.++-++
T Consensus 166 R~~~-~si~~~r~~ 178 (239)
T cd00808 166 RHGD-TSISDYREE 178 (239)
T ss_pred CCCH-HCHHHHHHC
T ss_conf 0872-169999986
No 55
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=98.74 E-value=1.2e-07 Score=72.52 Aligned_cols=134 Identities=18% Similarity=0.303 Sum_probs=82.3
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 41000223443224411777778568999999998506664102014775314555678987532221024500066011
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
++-++-=.=|+++|.|||||+||-+|+|.++|--+-.||+|...-=.+-.|..+-.-+.. .... ......
T Consensus 54 ~~f~~~dGPPyanG~lH~GHaln~tikDii~Rykrm~G~~V~~~~GwD~hGLPiE~~vek---~l~~-~~~~~~------ 123 (966)
T PRK13804 54 PKFVLHDGPPYANGNIHIGHALNKILKDVIVRSKQMLGFDANYVPGWDCHGLPIEWKIEE---KYRA-KGKNKD------ 123 (966)
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH---HHHH-CCCCHH------
T ss_conf 976995799999998612255666899999999874899668999768887899999999---7765-289823------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCC---HHHHHHHH
Q ss_conf 024100001278888875764134302379999999789988754555887087521000158873010---45799999
Q gi|254780285|r 201 YPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGD---PSPIRDII 277 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~---~~~i~~~i 277 (586)
+..-++..+.++++ .....+.+++.+++||+.+|- +..|.... ...+..++
T Consensus 124 ----------------------~~~~~~f~~~cr~~-a~~~i~~~~~q~~rlG~~~DW---~~~y~T~dp~y~~~~~~~F 177 (966)
T PRK13804 124 ----------------------EVPLNEFRKECREY-ALSWIDVQREEFKRLGVIGDW---ENPYTTMDFHAEARIAREF 177 (966)
T ss_pred ----------------------HCCHHHHHHHHHHH-HHHHHHHHHHHHHHHCEEECC---CCCCCCCCHHHHHHHHHHH
T ss_conf ----------------------38999999999999-999999999999982920225---8984228989999999999
Q ss_pred HHHHHCCCCCCCC
Q ss_conf 9999749851134
Q gi|254780285|r 278 DNLARQGYVYEGI 290 (586)
Q Consensus 278 ~~l~~~g~~~e~~ 290 (586)
.+|.++|++|.+.
T Consensus 178 ~~l~ekGliYr~~ 190 (966)
T PRK13804 178 MKFAAKGQLYRGS 190 (966)
T ss_pred HHHHHCCCEEECC
T ss_conf 9999879988438
No 56
>cd00674 LysRS_core_class_I This is the catalytic core domain of lysyl tRNA synthetase (LysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.73 E-value=1.4e-07 Score=72.20 Aligned_cols=267 Identities=19% Similarity=0.328 Sum_probs=137.6
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf 10002234432244117777785689999999985066641020147753145556789875322210245000660110
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYY 201 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~ 201 (586)
.++| =|+--|.+..|||++|-.+.++.|+|-|+..|++|.=....+|.-. +..-+..+|+.
T Consensus 20 ~~v~-~tG~~PSG~~HIGn~rEv~~~~~V~ral~~~g~~~~~i~~~DD~D~----------------lRKVp~~lpe~-- 80 (354)
T cd00674 20 KYVV-ASGISPSGLIHIGNFREVVTADAVRRALRDLGFEVRLIYSWDDYDP----------------LRKVPDNVPES-- 80 (354)
T ss_pred CEEE-ECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCH----------------HCCCCCCCCHH--
T ss_conf 5899-4787999886320550178899999999975996799998405551----------------00375578799--
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCH--HHHHHHHH
Q ss_conf 24100001278888875764134302-3799999997899887545558870875210001588730104--57999999
Q gi|254780285|r 202 PGVYLKHVGKELADKYSSELLNFPEE-KWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDP--SPIRDIID 278 (586)
Q Consensus 202 ~~~y~~~~~~e~~~~~~~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~--~~i~~~i~ 278 (586)
+....++.+. ..++- +... .+ .+.....+.+.|..+|+.++... -++.|+.+. ..+..+++
T Consensus 81 ---~~~ylg~PL~--------~IPdP~G~~~---Sy-aeHf~~~f~~~L~~~gi~~e~~s-~te~Y~sG~f~~~i~~~l~ 144 (354)
T cd00674 81 ---LEQYIGMPLS--------SVPDPFGCHE---SY-AEHFNAPFEESLDRFGIEVEFIS-ASEMYKSGLYDEQIKRALE 144 (354)
T ss_pred ---HHHHCCCCCE--------ECCCCCCCCC---CH-HHHHHHHHHHHHHHCCCEEEEEE-HHHCCCCCCCHHHHHHHHH
T ss_conf ---9986299630--------0689777754---59-99999999999998498289988-5660225762799999998
Q ss_pred H----------HHHCCC-----CCCCCCCCCCCCCCCC--CCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9----------997498-----5113426755565420--0024781565101102222222102465213568889999
Q gi|254780285|r 279 N----------LARQGY-----VYEGILPPPKSKTTQK--CDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYF 341 (586)
Q Consensus 279 ~----------l~~~g~-----~~e~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~ 341 (586)
+ ...+.. .+.-+.+...-..... ++.+...+.+... .|. .|+..+ +..-+=.
T Consensus 145 ~~~~I~~Il~~~~g~e~~~~y~P~~piC~~cGk~~t~v~~~d~~~~~V~Y~c~-cG~---------~~~~~~-~~g~gKL 213 (354)
T cd00674 145 KRDEIMEILNEYRGRELQETWYPYMPYCEKCGKDTTTVEEYDAEAETVRYRCE-CGH---------EGEVDI-RGGGGKL 213 (354)
T ss_pred HHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCEEEEEEEECCCCEEEEECC-CCC---------EEEEEC-CCCCCEE
T ss_conf 28999999998547555786477764058888116768999489997999959-998---------888843-7886203
Q ss_pred HHHHHCCCCCCCC-----CCCCCHHH---HHHHHHHHHH-HHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 9975225554333-----67776136---8999999999-7226634511531101101221100000122330245677
Q gi|254780285|r 342 KCKYERGFDNMIY-----VMGSDHSG---YVKRLEAVAA-AVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRH 412 (586)
Q Consensus 342 ~~k~e~~~d~~iy-----Vv~~~Q~~---h~~~v~~~~~-~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~d 412 (586)
.||.+-..-+.+- --|-||.. -+..-..+++ .+|+..+ .++.|+++.+ ++|. |||+-+||+++++|
T Consensus 214 ~WrvDW~mRW~~lgVd~Ep~GKDh~~~GgS~d~~~~I~~~i~g~~pP--~~~~YE~~~~-kgg~--KmSsSkGn~it~~e 288 (354)
T cd00674 214 QWRVDWAMRWAALGVDFEPFGKDHASSGGSYDTSKEIAREIFGGEPP--EGVMYEFIGL-KGGG--KMSSSKGNVITPRD 288 (354)
T ss_pred EEEECCEEEEEECCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC--CCCCEEEEEE-CCCC--CCCCCCCCCCCHHH
T ss_conf 00103514553405158835742024675255789999997099999--8841699990-6998--72246786128999
Q ss_pred HHHHHHHHHHHHHHHHH-CCHHHHHHHH
Q ss_conf 77763211234555420-0012333447
Q gi|254780285|r 413 VVDEVGSDSVRFMMLWR-KNSELLDFDF 439 (586)
Q Consensus 413 ll~evg~~aiky~~L~~-~~~~~~~Fd~ 439 (586)
.++-.-..++||.+.++ ++.+.+.||.
T Consensus 289 ~L~~~~pE~lr~l~~~~p~~~k~i~fD~ 316 (354)
T cd00674 289 WLEVAPPESLRFLYARRKNPAKHIGFDL 316 (354)
T ss_pred HHHHCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9976599999999860998553224675
No 57
>cd00418 GlxRS_core Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The descriminating form of GluRS differs from GlnRS and the non-descriminating form of GluRS in their C-terminal anti-codon binding domains.
Probab=98.72 E-value=3.8e-07 Score=69.11 Aligned_cols=193 Identities=25% Similarity=0.293 Sum_probs=102.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHH
Q ss_conf 34432244117777785689999999985066641020147753145556789875322210245000660110241000
Q gi|254780285|r 128 VSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLK 207 (586)
Q Consensus 128 sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~ 207 (586)
.-|+|+++||+||+|++++..-.||-. -|.= ..| .+|.+. +
T Consensus 6 FAPsPtG~LHiG~ar~al~n~~~Ak~~--~G~~---------------------~LR------ieDTD~-~--------- 46 (223)
T cd00418 6 FAPSPTGYLHIGHARAALLNYLYAKKY--GGKF---------------------ILR------FDDTDP-E--------- 46 (223)
T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHH--CCEE---------------------EEE------ECCCCC-C---------
T ss_conf 088989854289999999999999985--9989---------------------997------236886-4---------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-EECHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 012788888757641343023799999997899887545558870875210-0015887301045799999999974985
Q gi|254780285|r 208 HVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDI-FISEDDFHRGDPSPIRDIIDNLARQGYV 286 (586)
Q Consensus 208 ~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~-~~~Es~~~~~~~~~i~~~i~~l~~~g~~ 286 (586)
.+.....+.+.++++.||+.+|. ....|+.. ....+.+++|.++|
T Consensus 47 ----------------------------r~~~e~~~~I~~dL~wLGl~~d~~~~~QS~r~----~~y~~~~~~Li~~G-- 92 (223)
T cd00418 47 ----------------------------REVEEAEDSILEDLKWLGIKWDEGPYYQSDRF----DIYYEYAEKLIEEG-- 92 (223)
T ss_pred ----------------------------CCHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH----HHHHHHHHHHHHCC--
T ss_conf ----------------------------01888999999999991899998685387589----99999999997569--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHH
Q ss_conf 11342675556542000247815651011022222221024652135688899999975225554333677761368999
Q gi|254780285|r 287 YEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKR 366 (586)
Q Consensus 287 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~ 366 (586)
|.++| |+|...+-...+...+ +=|.|+.....+
T Consensus 93 ------------------------------------------~~PtY---~fa~vVDD~~~gITHV--iRG~D~~~~t~~ 125 (223)
T cd00418 93 ------------------------------------------GYPTY---DFAVVVDDHLMGITHV--LRGEEHLDNTPK 125 (223)
T ss_pred ------------------------------------------CCCCE---EEEEEECCCCCCCCEE--ECCHHHHHCCHH
T ss_conf ------------------------------------------98140---1025853765788756--546277646799
Q ss_pred HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCH---------------HHHHHHHHHHHH--HHHHHHHHH-
Q ss_conf 99999972266345115311011012211000001223302---------------456777776321--123455542-
Q gi|254780285|r 367 LEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDF---------------ITLRHVVDEVGS--DSVRFMMLW- 428 (586)
Q Consensus 367 v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~---------------v~l~dll~evg~--~aiky~~L~- 428 (586)
=..+.+.||+..+.+.|+. .+. ..+|+ |||+|+|.. .++..+-+. |+ .|++=++..
T Consensus 126 q~~l~~aLg~~~P~~~H~p--~l~-~~~g~--kLSKR~~~~~i~~~~~~gwdDprl~tl~~~r~~-G~~peai~n~~~~l 199 (223)
T cd00418 126 QIWLYEALGWEPPVFAHFG--RLN-NEDGT--KLSKRKLKKLVEEGIVEGWDDPRLPTLRGLRRR-GYLPEALRNFIALL 199 (223)
T ss_pred HHHHHHHCCCCCCEEEEEC--CEE-CCCCC--CCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHC-CCCHHHHHHHHHHH
T ss_conf 9999997099997289862--076-58887--140200021045577678878871039999986-99899999999995
Q ss_pred HCCHHHHHHHHHHHHHHC
Q ss_conf 000123334477765320
Q gi|254780285|r 429 RKNSELLDFDFCKVKEQS 446 (586)
Q Consensus 429 ~~~~~~~~Fd~d~~l~~~ 446 (586)
--..++..|||++.-+++
T Consensus 200 G~s~~~~~~~~~~l~~~n 217 (223)
T cd00418 200 GWSKSDATFDWEKLEALN 217 (223)
T ss_pred CCCCCCCEECHHHHHHHH
T ss_conf 899878746699999998
No 58
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=98.71 E-value=3e-07 Score=69.83 Aligned_cols=35 Identities=40% Similarity=0.764 Sum_probs=29.0
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 554100022344322441177777856899999999
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLM 154 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril 154 (586)
...+|++=| -|||+|+|||||+|++++-...|+.+
T Consensus 97 ~~gkV~tRF-aP~P~G~LHiGhar~al~N~~~Ak~~ 131 (566)
T PRK04156 97 VKGKVVMRF-APNPSGPLHLGHARAAILNDEYAKRY 131 (566)
T ss_pred CCCEEEEEE-CCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 688389952-86999876189999999969999980
No 59
>TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=98.70 E-value=5.6e-07 Score=67.91 Aligned_cols=194 Identities=18% Similarity=0.253 Sum_probs=118.7
Q ss_pred HHHHHHHHHHC---C--CCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHH------------------------
Q ss_conf 99999999722---6--634511531101101221100000122330245677777------------------------
Q gi|254780285|r 365 KRLEAVAAAVS---E--KKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVD------------------------ 415 (586)
Q Consensus 365 ~~v~~~~~~lg---~--~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~------------------------ 415 (586)
..++..+...| - ..+-.+++..|||+- ++|+ |||+-.||+|.=.|+++
T Consensus 551 RMi~~~~~~tgDEnGkP~~PFk~v~ihGLVRD-eqG~--KMSKSlGNvIdP~d~I~GI~L~dL~~K~~~~~l~P~~~eK~ 627 (970)
T TIGR00422 551 RMILRSLALTGDENGKPQVPFKDVYIHGLVRD-EQGR--KMSKSLGNVIDPLDVIEGISLDDLLEKRTGNMLQPQLAEKI 627 (970)
T ss_pred HHHHHHHHHHCCCCCCCCCCCEEEEECCEEEC-CCCC--CCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCCHHHHHHH
T ss_conf 99862155401358698878202586544555-8885--12220568347698606887078999974577783589998
Q ss_pred -------------HHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf -------------6321123455542000--123334477765320244367888--88888999987533200246832
Q gi|254780285|r 416 -------------EVGSDSVRFMMLWRKN--SELLDFDFCKVKEQSKENPVFYVQ--YAYARCRSIFRQAKDIFPDLDFD 478 (586)
Q Consensus 416 -------------evg~~aiky~~L~~~~--~~~~~Fd~d~~l~~~~~nt~~Yiq--Ya~aR~~SIlrKa~~~~~~~~~~ 478 (586)
+=|.||+||+.-+... ..|+.|+|.++-+ .-| |++ |..+|=....-+-. ..+
T Consensus 628 ~~~~~~~fpnGI~~YGaDALR~~La~~~~G~G~Di~f~~~~v~~--~~n---F~NKlWNA~rF~l~~~~~~--~~~---- 696 (970)
T TIGR00422 628 KKGTKKSFPNGIPKYGADALRFTLASLVTGPGDDINFDWKRVES--ARN---FANKLWNASRFVLMNLSDD--TQD---- 696 (970)
T ss_pred HHHHHHCCCCCCHHCCHHHHHHHHHHCCCCCCCCCCCCHHHHHH--HHH---HHHHHHHHHHHHHHHCCCC--CCC----
T ss_conf 76432103232002060389999983586789864211898876--767---7678899999999600356--676----
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHCCCCCCCCC-CCCCC-HHH
Q ss_conf 234223552114998999999998421899999998528127999999999-988999870686666654-35787-899
Q gi|254780285|r 479 LFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLA-SVFHGHWSHGRENPRLRF-VQANN-RKL 555 (586)
Q Consensus 479 ~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La-~~Fn~fY~~~~~~~~~~v-~~~~~-~~~ 555 (586)
....-..+...+..++-++-+|.+.-..+.++..++.=...++-+|+-- ..|=-+|=.. .|. +..++ ++.
T Consensus 697 --~~~~~~~~~~~~l~drWILs~L~~~i~~v~~~ld~Y~F~~a~~~ly~F~W~dFCD~YIE~-----~K~~~~~~~~~~~ 769 (970)
T TIGR00422 697 --ELELSGGEEKLSLADRWILSKLNRTIKEVREALDKYRFNEAAKALYEFIWNDFCDWYIEL-----VKYRLYNGNDEAE 769 (970)
T ss_pred --CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-----HCCCCCCCCHHHH
T ss_conf --113577632013546999999999999999988403677887576521013451235442-----1431478973899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999999998731587985
Q gi|254780285|r 556 TMMRLQLVHAVASIINSGLNIIGVESP 582 (586)
Q Consensus 556 ~~~RL~L~~a~~~vL~~~L~LLGI~~p 582 (586)
+.....-.+.||+++|.||-.=+|
T Consensus 770 ---k~~A~~~L~~vLd~~l~LLhPf~P 793 (970)
T TIGR00422 770 ---KKAARDTLAYVLDKALRLLHPFMP 793 (970)
T ss_pred ---HHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf ---999999999999999998524552
No 60
>KOG1149 consensus
Probab=98.65 E-value=1.7e-05 Score=57.49 Aligned_cols=236 Identities=23% Similarity=0.255 Sum_probs=121.0
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHH--H---HHHHHH-HHHHHHHHCCCCCCCC
Q ss_conf 000223443224411777778568999999998506664102014775314--5---556789-8753222102450006
Q gi|254780285|r 123 VNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQ--I---NTLALS-VFWRYQQALYNNDSDL 196 (586)
Q Consensus 123 VvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q--~---~~li~~-~~~~~~~~~~~~~~~~ 196 (586)
|-|-| -|-||+-||+|-||.|..---.||=+ -|-=+.| +-|.-.- + ..-+.. +.|... ..|...
T Consensus 34 VRvRF-APSPTGfLHlGgLRTALfNYLfArk~--gGkFiLR---iEDTDq~R~v~gs~e~i~~~L~w~nl----~~DEgP 103 (524)
T KOG1149 34 VRVRF-APSPTGFLHLGGLRTALFNYLFARKK--GGKFILR---IEDTDQKRLIRGSEEAIYEDLKWANL----DWDEGP 103 (524)
T ss_pred EEEEE-CCCCCCCEEHHHHHHHHHHHHHHHHC--CCEEEEE---ECCCCCCCCCCCHHHHHHHHHHHCCC----CCCCCC
T ss_conf 47863-58987632201389999999998732--8848998---51565100046447789999986299----965588
Q ss_pred CHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH-HH-CCCCCCCEECHHHHHHCCHHHHH
Q ss_conf 60110241000012788888757641343023799999997899887545558-87-08752100015887301045799
Q gi|254780285|r 197 PEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDL-KA-LNIQHDIFISEDDFHRGDPSPIR 274 (586)
Q Consensus 197 ~e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l-~~-l~i~fD~~~~Es~~~~~~~~~i~ 274 (586)
-.++-.|.|......++++++...+++.... ..-++.+.-+..++++- +. .--.||. .....-.
T Consensus 104 ~~gG~~GPY~QS~R~eiY~kyae~Ll~sG~A-----YrCFCs~~rL~~lrk~A~k~~~~p~YD~---------kca~ls~ 169 (524)
T KOG1149 104 GVGGPFGPYEQSERLEIYKKYAEKLLESGHA-----YRCFCSEERLDLLRKSALKKHEIPRYDR---------KCANLSD 169 (524)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCE-----EEECCCHHHHHHHHHHHHCCCCCCCCCC---------HHCCCCH
T ss_conf 8689888524578999999999999865975-----6741588899999886531478874020---------2133579
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999997498511342675556542000247815651011022222221024652135688899999975225554333
Q gi|254780285|r 275 DIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIY 354 (586)
Q Consensus 275 ~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iy 354 (586)
+-++...+||..|.-.+..++. .....|.-.|.+-...... ..|.|+.||||-+|| +| -+
T Consensus 170 ~ei~~~lakg~pf~iRFrl~~~-~~~f~DLvyG~v~~~~d~~--~gD~VvmKSDgfPTY--------------Hf---An 229 (524)
T KOG1149 170 AEIKQKLAKGTPFTIRFRLPKE-SPPFTDLVYGKVNHNVDSN--EGDPVVMKSDGFPTY--------------HF---AN 229 (524)
T ss_pred HHHHHHHHCCCCEEEEEECCCC-CCCHHHHHHHHHHCCCCCC--CCCCEEEECCCCCCE--------------EE---EE
T ss_conf 9999997469980699736877-8870244420210255556--798179814898621--------------22---21
Q ss_pred CCCCCHHHHHHH-------------HHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 677761368999-------------999999722663451153110110122110000012233024
Q gi|254780285|r 355 VMGSDHSGYVKR-------------LEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFI 408 (586)
Q Consensus 355 Vv~~~Q~~h~~~-------------v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v 408 (586)
||| ||..+... -....+++||..+++.|+.-= +..||+ |.|+|.|.+-
T Consensus 230 VVD-Dh~M~IsHViRGeEWlpST~KH~lLYkAfgW~pPkFaHlpLl---~n~d~s--KLSKRqgD~~ 290 (524)
T KOG1149 230 VVD-DHLMGISHVIRGEEWLPSTLKHILLYKAFGWQPPKFAHLPLL---LNPDGS--KLSKRQGDAS 290 (524)
T ss_pred EEC-CHHCCHHHEEECCHHCCCCHHHHHHHHHHCCCCCCEEEEEEE---ECCCCC--HHHHHCCCCH
T ss_conf 222-000120211302010564088999999828999851342346---658854--0002037523
No 61
>TIGR00396 leuS_bact leucyl-tRNA synthetase; InterPro: IPR002302 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes the eubacterial and mitochondrial synthetases. The crystal structure of leucyl-tRNA synthetase from the hyperthermophile Thermus thermophilus has an overall architecture that is similar to that of isoleucyl-tRNA synthetase, except that the putative editing domain is inserted at a different position in the primary structure. This feature is unique to prokaryote-like leucyl-tRNA synthetases, as is the presence of a novel additional flexibly inserted domain . ; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=98.60 E-value=1.8e-07 Score=71.32 Aligned_cols=174 Identities=13% Similarity=0.269 Sum_probs=96.2
Q ss_pred CCCCCCCHH----HHHHHHHHHHHHHCC--C----CCCCEEEECCHHHCC-------CCCCC------------------
Q ss_conf 336777613----689999999997226--6----345115311011012-------21100------------------
Q gi|254780285|r 353 IYVMGSDHS----GYVKRLEAVAAAVSE--K----KAQINVLLCELVRLY-------RDGMP------------------ 397 (586)
Q Consensus 353 iyVv~~~Q~----~h~~~v~~~~~~lg~--~----~~~~~~~~~~~v~l~-------~dg~~------------------ 397 (586)
+||=|.||. +|++=..+.|..+|+ . +.-+.-+.+|++.|+ ++|+.
T Consensus 566 ~YiGG~EHAiLHLLY~RF~hK~L~D~g~v~~PaGi~EPFkKL~~QGMVlg~~f~y~~~~g~~~W~~p~d~~~~~d~~~d~ 645 (916)
T TIGR00396 566 LYIGGIEHAILHLLYARFFHKFLYDLGLVSTPAGIKEPFKKLINQGMVLGDAFYYKKPNGKRIWVVPADELIERDEKGDI 645 (916)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCEEECCCEEECCCCCCEEEEECCCCEEECCCCCCC
T ss_conf 10262689989988889999999745761587766571455420000211613413899736776457516610466786
Q ss_pred ----------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf ----------------0001223302456777776321123455542000123334477765320244367888888889
Q gi|254780285|r 398 ----------------IKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARC 461 (586)
Q Consensus 398 ----------------~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~ 461 (586)
.|||+-|||+|.=+++++.=|-||+|-++|=..|-.. ...|++.- +.|-.- ||+ |+
T Consensus 646 ~~~~d~~~~~~~~~~~~KMSKSK~N~i~P~e~~~~yGADa~Rlf~mF~~P~~~-~L~W~~~g-~~G~~R--FL~----RV 717 (916)
T TIGR00396 646 KKAKDKSGGELVVVGYEKMSKSKGNGIDPQEIVKKYGADALRLFIMFMGPIAA-SLEWNESG-LEGARR--FLD----RV 717 (916)
T ss_pred CCCEECCCCCEEEEEEEEECCCCCCCCCCHHHHHHCCHHHHHHHHHHCCCHHH-CCCCCCCC-HHHHHH--HHH----HH
T ss_conf 54232588824788777620236798870389740480279999970488314-14777111-013568--889----99
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHH
Q ss_conf 99987533200246832234223552114998999999998421899999998528127--999999999988999870
Q gi|254780285|r 462 RSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYK--LAFYLYDLASVFHGHWSH 538 (586)
Q Consensus 462 ~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~--l~~Yl~~La~~Fn~fY~~ 538 (586)
-.+..+.......+....-|....+. ...+..++.+.+.+ ..+|.++.++++-+. +=.-.=++....|..|..
T Consensus 718 w~l~~~~~~~~~~~~~avrP~~~~~~-~~l~~~~~~~~~~~---~~~lk~v~e~~~~~~~~fNT~IS~~M~l~N~L~k~ 792 (916)
T TIGR00396 718 WNLVKEILGELSGIISAVRPKTELTE-TALEEAQKELRREV---HKFLKKVTEDLEKLELSFNTAISAMMELLNALYKA 792 (916)
T ss_pred HHHHHHHCCCHHHEEEEECCCCCCCC-CCCCCHHHHHHHHH---HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998732660002554246100343-11230468999999---99998887531762013558999999999998731
No 62
>cd00672 CysRS_core This is the catalytic core domain of cysteinyl tRNA synthetase (CysRS). This class I enzyme is a monomer, which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.59 E-value=3.8e-07 Score=69.05 Aligned_cols=193 Identities=25% Similarity=0.324 Sum_probs=113.2
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
..+++|-+=-+.|-+=.+.||||+|+.+.-|.|.|+|++.||+|.-.-=|-|-+
T Consensus 16 ~~~~~V~~Y~CGPTVYd~~HiGhaR~~v~~D~l~R~L~~~gy~V~~V~NITDID-------------------------- 69 (213)
T cd00672 16 LNPGLVRMYVCGPTVYDYAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDID-------------------------- 69 (213)
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCC--------------------------
T ss_conf 889978899789968899876534257689999999996399358999726751--------------------------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-----EECHHHHHHCCHHH
Q ss_conf 0110241000012788888757641343023799999997899887545558870875210-----00158873010457
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDI-----FISEDDFHRGDPSP 272 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~-----~~~Es~~~~~~~~~ 272 (586)
+.+.+...++-. . +++. .+...+.+.++++.|||.--. |-.|... +
T Consensus 70 -------------DKII~~A~~~~~-----~----~~el-a~~y~~~f~~d~~~Lni~~p~~~PraWHiECsa------M 120 (213)
T cd00672 70 -------------DKIIKRAREEGL-----S----IKEV-AEYYTAEFFEDMKALNVLPPDVYPRVWHIECSA------M 120 (213)
T ss_pred -------------HHHHHHHHHCCC-----C----HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECHH------H
T ss_conf -------------899999998399-----9----9999-999999999999982899998135452014599------9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999974985113426755565420002478156510110222222210246521356888999999752255543
Q gi|254780285|r 273 IRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNM 352 (586)
Q Consensus 273 i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~ 352 (586)
..+.+ |+..| +..-|. |+ +|
T Consensus 121 ~~~~l---------------------------------------g~~~D---IH~GG~------DL-----~F------- 140 (213)
T cd00672 121 SMKYL---------------------------------------GETFD---IHGGGV------DL-----IF------- 140 (213)
T ss_pred HHHHH---------------------------------------CCCEE---EECCCC------CC-----CC-------
T ss_conf 89882---------------------------------------89625---634763------56-----58-------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 33677761368999999999722663451153110110122110000012233024567777763211234555420001
Q gi|254780285|r 353 IYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNS 432 (586)
Q Consensus 353 iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~ 432 (586)
.-|.....|..++. |.+.++ .-++.|++.. +|+ |||+-.||++++.|++.+....++||++|+..-.
T Consensus 141 -----PHHeNE~AQs~a~~---~~~~a~-~W~H~g~l~~--~g~--KMSKSlgN~~~i~dll~~~~~~~~R~~lls~hYR 207 (213)
T cd00672 141 -----PHHENEIAQSEAAF---GKPFAR-YWLHTGHLTI--DGE--KMSKSLGNFITVRDALKKYDPEVLRLALLSSHYR 207 (213)
T ss_pred -----CCCCCHHHHHHHHH---CCCCCC-EEEEHHHHHH--CCC--EECCCCCCEEEHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf -----99704999988865---899601-0003457872--756--4034578752699998439999999999827378
Q ss_pred HHHHHH
Q ss_conf 233344
Q gi|254780285|r 433 ELLDFD 438 (586)
Q Consensus 433 ~~~~Fd 438 (586)
+.++|+
T Consensus 208 ~~l~fs 213 (213)
T cd00672 208 SPLDYS 213 (213)
T ss_pred CCCCCC
T ss_conf 987899
No 63
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=98.45 E-value=9.6e-06 Score=59.26 Aligned_cols=110 Identities=16% Similarity=0.220 Sum_probs=67.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 000122330245677777632112345554200-0123334477765320244367888888889999875332002468
Q gi|254780285|r 398 IKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK-NSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLD 476 (586)
Q Consensus 398 ~kmstR~G~~v~l~dll~evg~~aiky~~L~~~-~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~ 476 (586)
.|||+.+||+|..++++++-|.+|+|+++++.. +..++.|+-+.+. | ..-+++ |+-+++....
T Consensus 595 ~KMSKSkGNvv~P~~ii~~yGADalRl~~l~~ap~~~d~~ws~~~i~----g-~~rfl~----rlw~~~~~~~------- 658 (822)
T PRK00390 595 IKMSKSKGNVVDPDDIIDKYGADTARLFEMFAGPPEKDLEWSDSGVE----G-AYRFLQ----RVWRLVYDEG------- 658 (822)
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHHHH----H-HHHHHH----HHHHHHHCCC-------
T ss_conf 61676578968989998754807999999960885666120487899----9-999999----9999730444-------
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q ss_conf 3223422355211499899999999842189999999852812799999999998899
Q gi|254780285|r 477 FDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHG 534 (586)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~ 534 (586)
.......+..|.+.|.+.-..+..+.+++.-+..+.-++++.+.+++
T Consensus 659 -----------~~~~~~~d~~l~~~l~~~I~~vt~~~e~~~fn~ai~~l~~f~N~l~k 705 (822)
T PRK00390 659 -----------AVAALEADKELRRALHKTIKKVTEDIERLRFNTAIAALMELVNALSK 705 (822)
T ss_pred -----------CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf -----------55687231999999999999999999766776999999999999987
No 64
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.44 E-value=3.4e-05 Score=55.41 Aligned_cols=156 Identities=20% Similarity=0.223 Sum_probs=90.9
Q ss_pred CCCCCCCHH-HH--HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 336777613-68--999999999722663451153110110122110000012233024567777763211234555420
Q gi|254780285|r 353 IYVMGSDHS-GY--VKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR 429 (586)
Q Consensus 353 iyVv~~~Q~-~h--~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~ 429 (586)
+|+.|.||- .| |-.+.. ...++.....-.++..|+|. .+|+ |||+.+||+|..+|++++-|.+|+|+++++.
T Consensus 527 ~~~~G~D~i~~hl~f~~~~~-~aif~~~~~pk~v~~~G~Vl--~eG~--KMSKSkGNvV~P~eiI~~YGADalRl~l~~~ 601 (888)
T PRK12300 527 WRHSGKDLIPNHLTFFIFNH-VAIFPEEKWPRGIVVNGFVL--LEGK--KMSKSKGNVLPLREAIEEYGADVVRLYLAST 601 (888)
T ss_pred CCCCCEEHHHHHHHHHHHHH-HHHHCCCCCCCEEEEEEEEE--CCCE--ECCCCCCCCCCHHHHHHHCCCCHHHHHHHHC
T ss_conf 14353103356799999886-88717777887579832894--5987--7030348989989999761962999999971
Q ss_pred -CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -0012333447776532024436788888888999987533200246832234223552114998999999998421899
Q gi|254780285|r 430 -KNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRV 508 (586)
Q Consensus 430 -~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~v 508 (586)
.+..+..|+.+.+... .. ++ -|+-++.+....... .......++-++..|.+.-..
T Consensus 602 a~~~~d~~~~~~~v~~~-~~----~l----~~~~~~~~~~~~~~~--------------~~~~~~~D~wils~l~~~i~~ 658 (888)
T PRK12300 602 AELSQDADFREKEAESI-RR----QL----ERFYELAVELAEEES--------------EEELRFIDKWLLSRLYSYIKE 658 (888)
T ss_pred CCCCCCCCCCHHHHHHH-HH----HH----HHHHHHHHHHHCCCC--------------CCCCCHHHHHHHHHHHHHHHH
T ss_conf 88556864579999999-99----99----999999997632677--------------767766789999999999999
Q ss_pred HHHHHHHCCCHHHHHHHH-HHHHHHHHHHH
Q ss_conf 999998528127999999-99998899987
Q gi|254780285|r 509 IENATIAQEPYKLAFYLY-DLASVFHGHWS 537 (586)
Q Consensus 509 i~~a~~~~~P~~l~~Yl~-~La~~Fn~fY~ 537 (586)
+..+.+++..+..+.-++ .+...+ ++|-
T Consensus 659 v~~~~e~~~f~~a~~~~~~~~~~~~-~~Y~ 687 (888)
T PRK12300 659 VTEAMEEFQTRKAIQEIFYNLLNDL-RWYL 687 (888)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHH-HHHH
T ss_conf 9999984459999999999999999-9999
No 65
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=98.39 E-value=1.5e-06 Score=64.82 Aligned_cols=158 Identities=17% Similarity=0.249 Sum_probs=84.2
Q ss_pred CCCCCCCHH----HHHHHHHHHHHHHCCCC---CCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 336777613----68999999999722663---45115311011012211000001223302456777776321123455
Q gi|254780285|r 353 IYVMGSDHS----GYVKRLEAVAAAVSEKK---AQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFM 425 (586)
Q Consensus 353 iyVv~~~Q~----~h~~~v~~~~~~lg~~~---~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~ 425 (586)
+||-|.||. .++.=-..++.-.|+-. +-...+.-||| +..+|. |||+-+||+|++++++++-|.+++|.+
T Consensus 529 ~yigG~ehavlHLly~rF~hkal~d~g~~p~~epf~~L~~qGmV-l~~~g~--KMSKSKgN~v~p~~~i~~yGADt~Rl~ 605 (814)
T COG0495 529 LYIGGIEHAVLHLLYFRFFHKALFDEGLVPKDEPFKKLITQGMV-LGEEGE--KMSKSKGNVVDPEEAVEKYGADTVRLY 605 (814)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCEE-EECCCC--CCCCCCCCCCCHHHHHHHHCCHHHHHH
T ss_conf 12263667778899999999883475778776504444114268-742777--045445788898999999584098999
Q ss_pred HHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHH-HHHHHHHHH
Q ss_conf 5420001233344777653202443678888888899998753320024683223422355211499899-999999842
Q gi|254780285|r 426 MLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSE-LQLIVHLAE 504 (586)
Q Consensus 426 ~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E-~~L~~~l~~ 504 (586)
++...+-. -+++|+...- .| ..=++ .++.+-..+..... ....+..+ ..+...+.+
T Consensus 606 ~m~~ap~~-~d~~W~e~gv--~g-~~rfL-------~r~~~l~~~~~~~~------------~~~~~~~~~~~~~~~~h~ 662 (814)
T COG0495 606 IMFAAPPE-QDLEWSESGV--EG-ARRFL-------QRVWNLVKEHLEKL------------VEELTKEQGKEDRWLLHR 662 (814)
T ss_pred HHHHCCHH-HCCCCCHHHH--HH-HHHHH-------HHHHHHHHHHHHCC------------CCCCCCHHHHHHHHHHHH
T ss_conf 98608775-3788774564--89-99999-------99999999864023------------333553056889999999
Q ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 18999999985-281279999999999889998
Q gi|254780285|r 505 YPRVIENATIA-QEPYKLAFYLYDLASVFHGHW 536 (586)
Q Consensus 505 f~~vi~~a~~~-~~P~~l~~Yl~~La~~Fn~fY 536 (586)
+-..|.+..+. +.=+.+..-+|+|.++...+-
T Consensus 663 ~~~~v~~~~e~~~~~nt~i~~~m~l~N~l~~~~ 695 (814)
T COG0495 663 TIKKVTEDFEARQTFNTAIAALMELLNALRKYL 695 (814)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999889999999999999999987
No 66
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=98.38 E-value=3.2e-06 Score=62.57 Aligned_cols=125 Identities=22% Similarity=0.371 Sum_probs=71.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHH
Q ss_conf 11777778568999999998506664102014775314555678987532221024500066011024100001278888
Q gi|254780285|r 136 MHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELAD 215 (586)
Q Consensus 136 lHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~~~~e~~~ 215 (586)
|||||+||-+|+|.++|--+-.||+|..--=.+-.|+.+...+-.+ .. .+....+ .+ ++...
T Consensus 1 LH~GH~~~~ti~DiiaRykrM~G~~Vl~p~GwD~~GlPi~~~ae~~----~~----~~~~~~~-~~---------~~~~~ 62 (888)
T PRK12300 1 LHIGHGRTYTIGDIYARYKRMKGYNVLFPMGFHVTGTPILGIAERI----AE----GDPETID-IY---------RNLYG 62 (888)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH----HH----CCHHHHH-HH---------HHHHC
T ss_conf 9405547879999999999807997799998888995389999998----60----4446899-98---------77513
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC----EECHHHHHHCCHHHHHHHHHHHHHCCCCCCC
Q ss_conf 8757641343023799999997899887545558870875210----0015887301045799999999974985113
Q gi|254780285|r 216 KYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDI----FISEDDFHRGDPSPIRDIIDNLARQGYVYEG 289 (586)
Q Consensus 216 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~----~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~ 289 (586)
....+..+..+. . ...+...+.+++++++||..+|- ....-+|+ ..+..++.+|.++|++|.+
T Consensus 63 ~~~~~i~k~~~~---~----~~~~~~~~~~~~q~~rlG~s~DW~re~~T~dp~y~----~~v~w~F~kL~ekGliyrg 129 (888)
T PRK12300 63 IPEEEIEKFKDP---E----YIVEYFSKEAKEAMKRIGYSIDWRREFTTTDPEYS----KFIEWQFRKLKEKGLIVKG 129 (888)
T ss_pred CCHHHHHHHHHH---H----HHHHHHHHHHHHHHHHHCCEEECCCCCCCCCHHHH----HHHHHHHHHHHHCCCEEEC
T ss_conf 668888875009---9----99999999999999983860636998664888799----9999999999977994978
No 67
>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.34 E-value=2e-06 Score=64.09 Aligned_cols=165 Identities=20% Similarity=0.239 Sum_probs=95.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHH
Q ss_conf 34432244117777785689999999985066641020147753145556789875322210245000660110241000
Q gi|254780285|r 128 VSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLK 207 (586)
Q Consensus 128 sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~ 207 (586)
.-|+|+|+||+||+|++++-...||-. -|-= + .| .+|.+. +
T Consensus 6 FAPsPtG~lHiG~artal~n~l~Ar~~--~G~~-----------------i----LR------iEDTD~-~--------- 46 (238)
T cd00807 6 FPPEPNGYLHIGHAKAAILNFEYAKRY--GGKL-----------------I----LR------FDDTNP-K--------- 46 (238)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH--CCEE-----------------E----EE------ECCCCC-C---------
T ss_conf 088989864389999999999999982--9969-----------------9----98------677898-7---------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 01278888875764134302379999999789988754555887087521000158873010457999999999749851
Q gi|254780285|r 208 HVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVY 287 (586)
Q Consensus 208 ~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~ 287 (586)
.......+.+.++++.||+.+|.....|+.. ....+..++|.++|.+|
T Consensus 47 ----------------------------r~~~e~~~~I~~~L~wLGl~~De~~~QS~r~----~~y~~~a~~Li~~G~AY 94 (238)
T cd00807 47 ----------------------------KEDEEAYDSILEDLEWLGIKPDEITYASDYF----DLYYEYAEKLIKMGKAY 94 (238)
T ss_pred ----------------------------CCCCHHHHHHHHHHHHHCCCCCCCEECCCCH----HHHHHHHHHHHHCCCCC
T ss_conf ----------------------------6761689999999998489999315636679----99999999999879987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 13426755565420002478156510110222222210246521356888999999752255543336777613689999
Q gi|254780285|r 288 EGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRL 367 (586)
Q Consensus 288 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v 367 (586)
-. + + .|+. -++ -+|| |+|...+-...+...+ +=|.|+.....+=
T Consensus 95 ~h----~-----------------r---~g~k-~~v------~PtY---~fa~vVDD~~~gITHV--iRG~D~l~nt~~q 138 (238)
T cd00807 95 VH----P-----------------R---TGDK-YCV------YPTY---DFAHPIDDSLEGITHS--LRTKEFQDRREKY 138 (238)
T ss_pred CC----C-----------------C---CCCC-CEE------CCCC---CCCEEECCCCCCCCEE--EECCCCCCCCHHH
T ss_conf 45----4-----------------4---6997-501------4553---3221621645788768--8762101387999
Q ss_pred HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCC
Q ss_conf 99999722663451153110110122110000012233
Q gi|254780285|r 368 EAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAG 405 (586)
Q Consensus 368 ~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G 405 (586)
..+.+.||+..+.+.|+. .++ .+|+ |||+|++
T Consensus 139 ~~l~~aLg~~~P~~~h~~--~l~--~~~~--klSKR~~ 170 (238)
T cd00807 139 DWLYEYLGWRKPEQIEFG--RLN--LEYT--VLSKRKL 170 (238)
T ss_pred HHHHHHCCCCCCCEEEEE--EEC--CCCC--CCCCCCH
T ss_conf 999998499998678875--487--9997--0546151
No 68
>TIGR00422 valS valyl-tRNA synthetase; InterPro: IPR002303 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.94 E-value=0.0013 Score=44.39 Aligned_cols=146 Identities=21% Similarity=0.308 Sum_probs=96.7
Q ss_pred CC--EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCC-CCC
Q ss_conf 41--000223443224411777778568999999998506664102014775314555678987532221024500-066
Q gi|254780285|r 121 TK--VNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDS-DLP 197 (586)
Q Consensus 121 ~k--VvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~-~~~ 197 (586)
++ -.|.-.=|||||.|||||+=+..|=|.|+|-=|=.||+|. + +.+-|+ .++
T Consensus 35 ~~~~f~i~~PPPNvTG~LH~GHAl~~~l~D~l~RykRM~G~~vL---w----------------------~~G~DHAGIA 89 (970)
T TIGR00422 35 EPKRFCIVIPPPNVTGSLHIGHALNWSLQDILARYKRMKGYNVL---W----------------------LPGTDHAGIA 89 (970)
T ss_pred CCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC---C----------------------CCCCCCCCCH
T ss_conf 77751571782585555116689999999999985421787125---7----------------------8886657632
Q ss_pred HHHCCCCCHHHHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHH-HHHCCHHHHH
Q ss_conf 01102410000127888887--57641343023799999997899887545558870875210001588-7301045799
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKY--SSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDD-FHRGDPSPIR 274 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~--~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~-~~~~~~~~i~ 274 (586)
-+ -++ .+.+..+. .+..-+...++....+++| .+.....|++++++||+..|- ..|.. ...+-...+.
T Consensus 90 TQ---~~v----E~~~~~~~ikgK~k~D~gRe~F~~~~~ew-k~e~~~~I~~Q~~rLG~S~DW-srE~FTmd~~l~~~V~ 160 (970)
T TIGR00422 90 TQ---VKV----EKKLKAEEIKGKTKHDLGREEFVEKIWEW-KEESGGTIKNQIKRLGVSLDW-SRERFTMDEGLSKAVK 160 (970)
T ss_pred HH---HHH----HHHHHHHCCCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCC-CCCEEECCHHHHHHHH
T ss_conf 46---899----99987622578877878868999999999-988779999999980885023-5004544888888999
Q ss_pred HHHHHHHHCCCCCCCC---CCCCCCCCCC
Q ss_conf 9999999749851134---2675556542
Q gi|254780285|r 275 DIIDNLARQGYVYEGI---LPPPKSKTTQ 300 (586)
Q Consensus 275 ~~i~~l~~~g~~~e~~---~~~~~~~~~~ 300 (586)
.++-+|-++|++|.+. -+.|++..+.
T Consensus 161 ~~Fv~LY~~GLIYRg~~lVNWdpk~~TAi 189 (970)
T TIGR00422 161 EAFVRLYEKGLIYRGEYLVNWDPKLNTAI 189 (970)
T ss_pred HHHHHHHHCCCEEECCCCEEEECCCCCHH
T ss_conf 99998855486154361137205446310
No 69
>KOG0432 consensus
Probab=97.90 E-value=9.7e-05 Score=52.21 Aligned_cols=172 Identities=23% Similarity=0.333 Sum_probs=88.4
Q ss_pred CCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHH-------------------------------------HHHHHH
Q ss_conf 4511531101101221100000122330245677777-------------------------------------632112
Q gi|254780285|r 379 AQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVD-------------------------------------EVGSDS 421 (586)
Q Consensus 379 ~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~-------------------------------------evg~~a 421 (586)
+-.++++.++|+ |....|||+--||+|.--|+++ |-|.+|
T Consensus 576 PF~~V~LH~mVR---Da~GRKMSKSLGNVIDPlDVI~Gisle~L~~~L~~gNLdp~Ev~~a~~gq~kdFPnGIpeCGtDA 652 (995)
T KOG0432 576 PFKEVLLHGLVR---DAHGRKMSKSLGNVIDPLDVIDGISLEKLHAKLLSGNLDPREVEKAKKGQKKDFPNGIPECGTDA 652 (995)
T ss_pred CCHHEEECHHHC---CCCCCCCCHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHH
T ss_conf 734114421211---35245221100452488887523129999999872799989999998777753678874335389
Q ss_pred HHHHHHHH-CCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 34555420-0012333447776532-024436788888888999987533200246832234223552114998999999
Q gi|254780285|r 422 VRFMMLWR-KNSELLDFDFCKVKEQ-SKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLI 499 (586)
Q Consensus 422 iky~~L~~-~~~~~~~Fd~d~~l~~-~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~ 499 (586)
+||++++. .-..++.+|..++..- ..-| =.|..+|- ++...+ .++.. .+.......... ..+| ++
T Consensus 653 LRFaL~s~~~~~~dInLDv~rv~g~r~FcN----KlWNa~rF--~l~~lg---~~~~p--~~~~~~~~~~~~-~d~W-Il 719 (995)
T KOG0432 653 LRFALCSYTTQGRDINLDVLRVEGYRHFCN----KLWNATRF--ALQRLG---ENFVP--SPTEDLSGNESL-VDEW-IL 719 (995)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHH--HHHHCC---CCCCC--CCCCCCCCCCCH-HHHH-HH
T ss_conf 999998712567644441898766899999----99999999--987435---57888--822356877410-6899-99
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHH-----HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 99842189999999852812799-----99999999889998706866666543578789999-9999999999999998
Q gi|254780285|r 500 VHLAEYPRVIENATIAQEPYKLA-----FYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTM-MRLQLVHAVASIINSG 573 (586)
Q Consensus 500 ~~l~~f~~vi~~a~~~~~P~~l~-----~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~-~RL~L~~a~~~vL~~~ 573 (586)
..|..--+.+.++.+.++=|..+ .++|+||..|-.-+ .+++...+..... +| ...-.+|.+|
T Consensus 720 srL~~av~~~~~~~~~~~f~~at~a~~~Fwl~~lCDVYlE~~--------Kp~l~~~~~~~~~~a~----~vL~~~ld~g 787 (995)
T KOG0432 720 SRLAEAVEEVNESLEARNFHLATSALYAFWLYDLCDVYLEAT--------KPLLWGDSEALAYEAR----RVLYRCLDNG 787 (995)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHCCCCHHHHHHHH----HHHHHHHHHH
T ss_conf 999999999985112001677899999999999989999985--------5876289345446678----8999999988
Q ss_pred HHHCC
Q ss_conf 73158
Q gi|254780285|r 574 LNIIG 578 (586)
Q Consensus 574 L~LLG 578 (586)
|.||.
T Consensus 788 Lrll~ 792 (995)
T KOG0432 788 LRLLH 792 (995)
T ss_pred HHHHC
T ss_conf 99845
No 70
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=97.75 E-value=0.00052 Score=47.08 Aligned_cols=55 Identities=25% Similarity=0.437 Sum_probs=40.9
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHH
Q ss_conf 55410002234432244117777785689999999985066641020147753145
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQI 174 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~ 174 (586)
+++..++|- =|=|++.|||||+||-+|+|.++|--+-.||+|..--=.+-.|...
T Consensus 31 ~~k~yvld~-~PYpsG~lH~GH~~~~ti~Dii~Rykrm~G~~Vl~p~GwD~~GLPa 85 (822)
T PRK00390 31 KPKYYVLDM-FPYPSGGLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPA 85 (822)
T ss_pred CCCEEEECC-CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
T ss_conf 998079377-9998986113255647899999999871899638989736688689
No 71
>PRK01233 glyS glycyl-tRNA synthetase subunit beta; Validated
Probab=97.63 E-value=0.0037 Score=41.11 Aligned_cols=108 Identities=16% Similarity=0.114 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 67888888889999875332002468322342235521149989999999984218999999985281279999999999
Q gi|254780285|r 451 VFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLAS 530 (586)
Q Consensus 451 ~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~ 530 (586)
+.=++=+|-|+.+|++|++.... ..++.....+++|++|...+......+..+.....=.....+|.+|+.
T Consensus 573 ~~~l~~a~kRv~NIl~k~~~~~~---------~~vd~~Lf~~~~E~~L~~~~~~~~~~~~~~~~~~~y~~~l~~L~~L~~ 643 (687)
T PRK01233 573 AEALAAANKRVSNILKKAEGKLS---------GAVDPSLFEEDAEKALYEALQALRPAVQPAFAAGDYQAALEALAALRP 643 (687)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCC---------CCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999999999999861666567---------875967737999999999999999999988754359999999997404
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999870686666654357878999999999999999999987
Q gi|254780285|r 531 VFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGL 574 (586)
Q Consensus 531 ~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L 574 (586)
.-+.|.++. .+..+|+++|.-||.|...++..+..-.
T Consensus 644 ~Id~FFD~V-------mVm~~d~~iR~NRL~LL~~i~~lf~~ia 680 (687)
T PRK01233 644 PVDAFFDNV-------MVMAEDEALRANRLALLSKLRELFLKVA 680 (687)
T ss_pred HHHHHHCCC-------EECCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 899984889-------7738988999999999999999998752
No 72
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=97.47 E-value=0.0013 Score=44.30 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=27.5
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 100022344322441177777856899999999
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVVGDTLASLM 154 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril 154 (586)
+| |==.-|||+|+||+||.|+++|-.-+|+.+
T Consensus 29 kV-vtRFpPePnG~LHiGHaka~~lN~~~a~~y 60 (556)
T PRK05347 29 KV-HTRFPPEPNGYLHIGHAKSICLNFGLAQDY 60 (556)
T ss_pred EE-EEECCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 39-980498999876188889998669999970
No 73
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0014 Score=44.04 Aligned_cols=127 Identities=18% Similarity=0.313 Sum_probs=69.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHH
Q ss_conf 34432244117777785689999999985066641020147753145556789875322210245000660110241000
Q gi|254780285|r 128 VSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLK 207 (586)
Q Consensus 128 sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~ 207 (586)
.-|=-||..|+||+-|-||=|.|.|--...||+|.+.-=.+==|..+-.-+.. .+
T Consensus 56 GPPyANG~iHiGHalnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~vek-------~l------------------ 110 (933)
T COG0060 56 GPPYANGNIHIGHALNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVEK-------KL------------------ 110 (933)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHH-------HH------------------
T ss_conf 99977898226566776666634333204588589889976788228899999-------82------------------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCH---HHHHHHHHHHHHCC
Q ss_conf 012788888757641343023799999997899887545558870875210001588730104---57999999999749
Q gi|254780285|r 208 HVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDP---SPIRDIIDNLARQG 284 (586)
Q Consensus 208 ~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~---~~i~~~i~~l~~~g 284 (586)
.. ..++.....-++..+.++++ +...++.++++.++||+.-|- |..|..... ..+-.++.++.++|
T Consensus 111 ------g~-~k~~i~~~~~~efr~~Cr~~-a~~~v~~q~~~f~RLGv~~Dw---~npY~Tmd~~ye~~~~~~f~~~~~kG 179 (933)
T COG0060 111 ------GI-GKKDIESFGVEEFREKCREF-ALEQVDEQKEQFKRLGVWGDW---ENPYKTMDPSYEESVWWAFKELYEKG 179 (933)
T ss_pred ------CC-CCCHHHHCCHHHHHHHHHHH-HHHHHHHHHHHHHHHEEEECC---CCCEECCCHHHHHHHHHHHHHHHHCC
T ss_conf ------87-63114334899999999999-999999999998763676326---89803278899999999999999779
Q ss_pred CCCCCC
Q ss_conf 851134
Q gi|254780285|r 285 YVYEGI 290 (586)
Q Consensus 285 ~~~e~~ 290 (586)
++|++.
T Consensus 180 llyrg~ 185 (933)
T COG0060 180 LLYRGY 185 (933)
T ss_pred CEECCC
T ss_conf 752277
No 74
>TIGR00463 gltX_arch glutamyl-tRNA synthetase; InterPro: IPR004526 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of E. coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure . ; GO: 0000166 nucleotide binding, 0004818 glutamate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006424 glutamyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=97.29 E-value=8.7e-05 Score=52.54 Aligned_cols=98 Identities=29% Similarity=0.490 Sum_probs=63.3
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 41000223443224411777778568999999998506664102014775314555678987532221024500066011
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
.+||.=| .|||+|||||||+|.+|+-+-.|+.++ |.+| +.-+|.+ |..
T Consensus 100 G~VV~RF-aPnPsGpLhiGhArAa~lN~~fa~~Y~-------------------GklI----------lR~dDTd-P~t- 147 (600)
T TIGR00463 100 GEVVMRF-APNPSGPLHIGHARAAILNQYFAKKYE-------------------GKLI----------LRFDDTD-PRT- 147 (600)
T ss_pred CCEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHCC-------------------CCEE----------EEEECCC-CCC-
T ss_conf 7357731-854545875233542232046685418-------------------8179----------9975587-887-
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHH
Q ss_conf 02410000127888887576413430237999999978998875455588708752100015887301045799999999
Q gi|254780285|r 201 YPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNL 280 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l 280 (586)
++ . . .+. . +.+.++|+.|||+.|...+.|++.+ ...+=-.+|
T Consensus 148 --------------kr---~----~-----~Ea----y----d~i~eDLdwLG~k~Dev~y~Sdr~~----~yYdY~~kL 189 (600)
T TIGR00463 148 --------------KR---V----K-----PEA----Y----DMILEDLDWLGVKGDEVVYQSDRIE----IYYDYARKL 189 (600)
T ss_pred --------------CC---C----C-----HHH----H----HHHHHHHHHCCCCEEEEEEEECCHH----HHHHHHHHH
T ss_conf --------------88---8----7-----246----6----5248778752842006898305301----568999999
Q ss_pred HHCCCCCC
Q ss_conf 97498511
Q gi|254780285|r 281 ARQGYVYE 288 (586)
Q Consensus 281 ~~~g~~~e 288 (586)
.+.|.+|-
T Consensus 190 Ie~G~AY~ 197 (600)
T TIGR00463 190 IEMGKAYV 197 (600)
T ss_pred HHCCCCEE
T ss_conf 86698343
No 75
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.07 E-value=0.013 Score=37.31 Aligned_cols=58 Identities=28% Similarity=0.453 Sum_probs=42.9
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHH
Q ss_conf 4100022344322441177777856899999999850666410201477531455567
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLA 178 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li 178 (586)
+|--|=.-=|=|++.|||||.||-.|||.+||-.|-.||+|.==-=.+=+|+.+-..+
T Consensus 34 ~Kfyvl~mfPYpSG~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMGwdafGlPae~~A 91 (814)
T COG0495 34 EKFYVLVMFPYPSGALHVGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAA 91 (814)
T ss_pred CCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHH
T ss_conf 7559986787888873468541210899999999856972145675566686399999
No 76
>KOG0435 consensus
Probab=96.78 E-value=0.00031 Score=48.61 Aligned_cols=53 Identities=26% Similarity=0.477 Sum_probs=39.1
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHH
Q ss_conf 541000223443224411777778568999999998506664102014775314
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQ 173 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q 173 (586)
++|.|... =|=|.+.|||||+|--.|-|+++|.++-.||+|+---=.+-+|..
T Consensus 57 k~KYiLsM-FPYPSG~LHiGHvRVYTIsD~laRf~rm~GynVihPMGWDaFGLP 109 (876)
T KOG0435 57 KKKYILSM-FPYPSGALHIGHVRVYTISDILARFYRMKGYNVIHPMGWDAFGLP 109 (876)
T ss_pred CCCEEEEE-CCCCCCCCCCCCEEEEEEHHHHHHHHHHCCCEEECCCCCCCCCCC
T ss_conf 87369973-678887611264279972588999998548642157763034883
No 77
>KOG0432 consensus
Probab=96.52 E-value=0.075 Score=31.93 Aligned_cols=136 Identities=23% Similarity=0.290 Sum_probs=79.0
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHH-HHHHHHHHCCCCCCCCC
Q ss_conf 55410002234432244117777785689999999985066641020147753145556789-87532221024500066
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALS-VFWRYQQALYNNDSDLP 197 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~-~~~~~~~~~~~~~~~~~ 197 (586)
.+..-++=-.-||+|+.||+||.-...|-|+++|-.+-.|++|.=.= |+-.+-++.. +..+.
T Consensus 73 ~~~~f~i~~PPPNVTG~LHiGHALt~aiqD~i~R~~rm~G~~vlw~P-----G~DHAGIATQ~VVEK~------------ 135 (995)
T KOG0432 73 PGGVFVIPLPPPNVTGSLHIGHALTVAIQDALARYNRMHGYQVLWVP-----GTDHAGIATQVVVEKQ------------ 135 (995)
T ss_pred CCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECC-----CCCCCCHHHHHHHHHH------------
T ss_conf 88853251599976563106578887889999999982597533248-----8663352479999999------------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHH-HCCHHHHHHH
Q ss_conf 011024100001278888875764134302379999999789988754555887087521000158873-0104579999
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFH-RGDPSPIRDI 276 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~-~~~~~~i~~~ 276 (586)
+..+....-.+...++.....|+| .+.--..|.+.+++||..+| |..|.... ...+..+.++
T Consensus 136 ---------------l~~~~~~~Rh~lgRe~F~~~vw~W-k~e~g~~I~~Qlk~lGas~D-W~re~fTmD~~~s~AV~eA 198 (995)
T KOG0432 136 ---------------LAREGGKTRHDLGREEFLKEVWEW-KEEYGGRIYNQLKRLGASLD-WDREAFTMDPKLSRAVTEA 198 (995)
T ss_pred ---------------HHHHCCCCHHHCCHHHHHHHHHHH-HHHHCCCHHHHHHHHCCCCC-CCHHHCCCCHHHHHHHHHH
T ss_conf ---------------987158632114899999999999-98858519999998357320-1475603477888999999
Q ss_pred HHHHHHCCCCCC
Q ss_conf 999997498511
Q gi|254780285|r 277 IDNLARQGYVYE 288 (586)
Q Consensus 277 i~~l~~~g~~~e 288 (586)
+..|.++|++|.
T Consensus 199 FvrL~eeglIyR 210 (995)
T KOG0432 199 FVRLHEEGLIYR 210 (995)
T ss_pred HHHHHHCCCEEE
T ss_conf 999876484673
No 78
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=96.15 E-value=0.0024 Score=42.47 Aligned_cols=141 Identities=21% Similarity=0.281 Sum_probs=81.4
Q ss_pred CCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHH--HHHH
Q ss_conf 34511531101101221100000122330245677777632112345554200012333447776532024436--7888
Q gi|254780285|r 378 KAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPV--FYVQ 455 (586)
Q Consensus 378 ~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~--~Yiq 455 (586)
+++ -....|+|.| +|+ |||+-+|++++|.+.+++-|-++.|+++++. .+..-+|||+.--- . |+. -.=.
T Consensus 722 WPr-Gi~vnG~~~L--eg~--KmSkSkGn~l~l~~~vekfGADv~Rl~~~~a-Ae~~~Dad~~~~e~--~-~~~~~L~~l 792 (1109)
T TIGR00395 722 WPR-GIVVNGYVLL--EGK--KMSKSKGNVLTLKEAVEKFGADVARLYILDA-AELVQDADWKESEV--E-GTKKRLERL 792 (1109)
T ss_pred CCC-EEEEEEEEEE--ECC--CCCCCCCCCHHHHHHHHHHCCHHHHHHHHHC-CCCCCCCCCCHHHH--H-HHHHHHHHH
T ss_conf 976-1799757887--173--4054547622388999872761899999731-78721356106778--9-999999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHH
Q ss_conf 8888899998753320024683223422355211499899999999842189999999852812799-999999998899
Q gi|254780285|r 456 YAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLA-FYLYDLASVFHG 534 (586)
Q Consensus 456 Ya~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~-~Yl~~La~~Fn~ 534 (586)
|-.|.=.+ .+. |.......+-+ .-..+--.+.|+-.|.+.=.-...+.+++.--.=. .=||+|-.+..
T Consensus 793 ~~~a~e~~--~~~-------~GrPvl~e~GP-aE~~~f~D~wl~~~l~~~i~~~~e~~~~~~~r~A~~~~Lf~L~~d~~- 861 (1109)
T TIGR00395 793 YEFAEEIT--KKS-------DGRPVLLEVGP-AEELSFIDRWLLSRLNKAIKEVTEAMENFQTRKAVKAALFDLKADVD- 861 (1109)
T ss_pred HHHHHHHH--HHH-------CCCEEEECCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 99999985--430-------68401103577-76310521899999999999999999866678999999999999999-
Q ss_pred HHHH
Q ss_conf 9870
Q gi|254780285|r 535 HWSH 538 (586)
Q Consensus 535 fY~~ 538 (586)
||..
T Consensus 862 ~Y~~ 865 (1109)
T TIGR00395 862 WYRR 865 (1109)
T ss_pred HHHH
T ss_conf 9998
No 79
>KOG0433 consensus
Probab=96.05 E-value=0.12 Score=30.58 Aligned_cols=194 Identities=20% Similarity=0.201 Sum_probs=100.6
Q ss_pred CCCCCCH-HHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH------HHHHHHHHHH
Q ss_conf 3677761-36899999999972266345115311011012211000001223302456777776------3211234555
Q gi|254780285|r 354 YVMGSDH-SGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE------VGSDSVRFMM 426 (586)
Q Consensus 354 yVv~~~Q-~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e------vg~~aiky~~ 426 (586)
|.-|.|| .++|+.....--+.....+...+...||. +.+.|. |||+--||+|.-+.+++- .|.+.+||-.
T Consensus 570 ~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFt-lDE~G~--KMSKSlGNVidP~~vi~G~~k~payGaD~LR~WV 646 (937)
T KOG0433 570 YLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFT-LDENGN--KMSKSLGNVVDPTMVTDGSLKQPAYGADGLRFWV 646 (937)
T ss_pred EEECCHHCCHHHHHHHHHHHHHHCCCCCHHEEEEEEE-ECCCCC--CHHHCCCCCCCHHHHHCCCCCCCCCCCCCEEEEE
T ss_conf 8844120123789999999987246872321562037-667754--2100226757889984775668875641001344
Q ss_pred HHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 42000123334477765320244367888888889999875332002468322342235521149989999999984218
Q gi|254780285|r 427 LWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYP 506 (586)
Q Consensus 427 L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~ 506 (586)
-..+...++.....-+. .-.++ +.-.| .-+|=.-....+.+... +.++. .++.--.+-++..|..|.
T Consensus 647 A~s~~t~d~~iGp~il~-qv~e~------l~K~R--~T~RfllGnl~d~~~~~---~~~p~-~dl~~iDqy~L~ql~~~~ 713 (937)
T KOG0433 647 AGSENTGESKIGPKILD-QVDEK------LIKFR--NTFRFLLGNLQDFDGKQ---VKFPL-KDLRYIDQYMLQQLDAIV 713 (937)
T ss_pred ECCCCCCCEECCHHHHH-HHHHH------HHHHH--HHHHHHHHCCCCCCCCC---CCCCC-HHHHHHHHHHHHHHHHHH
T ss_conf 23555575102889999-99999------99997--57798850411247765---51001-032232499999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99999998528127999999-99998899987068666665435787899999999999
Q gi|254780285|r 507 RVIENATIAQEPYKLAFYLY-DLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVH 564 (586)
Q Consensus 507 ~vi~~a~~~~~P~~l~~Yl~-~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~ 564 (586)
..+...+++++-.++..-+. =+...+++||-+- +.+.|=--+..+...+..+-.|+.
T Consensus 714 ~~i~elY~~Y~f~kVv~~lq~F~~~~lSa~Yfdi-vKDRLY~~~~~s~~rrs~QttL~h 771 (937)
T KOG0433 714 KRIIELYNDYKFRKVVNDLQQFLQRNLSAFYFDI-VKDRLYCDKVGSESRRSAQTTLHH 771 (937)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHH
T ss_conf 9999999851589999999999997766789998-766530588886888899999999
No 80
>TIGR00392 ileS isoleucyl-tRNA synthetase; InterPro: IPR002301 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Isoleucyl-tRNA synthetase (6.1.1.5 from EC) is an alpha monomer that belongs to class Ia. The enzyme, isoleucyl-transfer RNA synthetase, activates not only the cognate substrate L-isoleucine but also the minimally distinct L-valine in the first, aminoacylation step. Then, in a second, "editing" step, the synthetase itself rapidly hydrolyzes only the valylated products , as shown from the crystal structures. ; GO: 0000166 nucleotide binding, 0004822 isoleucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006428 isoleucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=95.99 E-value=0.015 Score=36.94 Aligned_cols=137 Identities=20% Similarity=0.326 Sum_probs=78.7
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
++++-|+.| .=|=-||.+|+||.=|-||=|.|.|-=...||+|.+.-=.+==|..|-.-+
T Consensus 34 ~~~~F~lhD-GPPYAnG~iHlGHalNKilKDii~Ryk~m~G~~v~~~pGWDtHGLPIE~~V------------------- 93 (938)
T TIGR00392 34 DKPEFVLHD-GPPYANGAIHLGHALNKILKDIILRYKTMQGYNVTYKPGWDTHGLPIELKV------------------- 93 (938)
T ss_pred CCCCEEEEC-CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCEEEEE-------------------
T ss_conf 998358744-858767997402556667611232101122500320478665787024456-------------------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCH---HHH
Q ss_conf 0110241000012788888757641343-023799999997899887545558870875210001588730104---579
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKYSSELLNFP-EEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDP---SPI 273 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~~~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~---~~i 273 (586)
.+++...-.++..... -++..+.++++ +-.-.+.++++..+||+.-|- |.-|..... ...
T Consensus 94 ------------ek~lg~~~~~~~~~~~g~E~fr~~Cr~~-A~~~~~~q~~~F~rLG~w~Dw---e~pY~T~d~~y~~~~ 157 (938)
T TIGR00392 94 ------------EKKLGISGKKEIESLEGIEEFREKCREF-ALKQIEEQREQFQRLGVWGDW---ENPYKTMDPSYEESQ 157 (938)
T ss_pred ------------ECCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHCEEECCC---CCCCCCCCHHHHHHH
T ss_conf ------------4047876400022044389999999999-999999999888853120225---578506788999999
Q ss_pred HHHHHHHHHCCCCCCCC
Q ss_conf 99999999749851134
Q gi|254780285|r 274 RDIIDNLARQGYVYEGI 290 (586)
Q Consensus 274 ~~~i~~l~~~g~~~e~~ 290 (586)
-.++.++.+||+++++.
T Consensus 158 w~~l~~~~eKGL~~~~~ 174 (938)
T TIGR00392 158 WWLLKELHEKGLLYRGL 174 (938)
T ss_pred HHHHHHHHHCCCEEECC
T ss_conf 99999997524202255
No 81
>KOG0433 consensus
Probab=95.89 E-value=0.15 Score=29.78 Aligned_cols=36 Identities=19% Similarity=0.460 Sum_probs=21.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 224411777778568999999998506664102014775
Q gi|254780285|r 132 PTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDA 170 (586)
Q Consensus 132 p~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~ 170 (586)
-++.||+||.+|-|+-|-+-|+.-..|..| +|+--|
T Consensus 66 anG~lhlghAlnKILkdiinr~~l~~g~~v---~yvPGW 101 (937)
T KOG0433 66 ANGNLHLGHALNKILKDIINRILLAQGKSA---LYVPGW 101 (937)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCEE---CCCCCC
T ss_conf 889801677898999999999999748744---257898
No 82
>TIGR00395 leuS_arch leucyl-tRNA synthetase; InterPro: IPR004493 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Leucyl tRNA synthetase (6.1.1.4 from EC) is an alpha monomer that belongs to class Ia. There are two different families of leucyl-tRNA synthetases. This family includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases.; GO: 0000166 nucleotide binding, 0004823 leucine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006429 leucyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=95.46 E-value=0.0084 Score=38.60 Aligned_cols=165 Identities=21% Similarity=0.245 Sum_probs=84.4
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCE--EECCCCCCHHHHHHHHHHHHHHHHHCC------CCC
Q ss_conf 100022344322441177777856899999999850666410--201477531455567898753222102------450
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTR--EYYINDAGAQINTLALSVFWRYQQALY------NND 193 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r--~nyvgD~G~Q~~~li~~~~~~~~~~~~------~~~ 193 (586)
|+.+=-.=|=++|-||+||+|.--|+|+.+|--|=.||+|.= -+|| +|+.|-=+|--+..+...... .++
T Consensus 42 Kff~t~AYPYlnG~lHaGH~rT~t~~e~~arF~RM~GknvLFPlGfHv--TG~Pilg~A~~i~~~de~t~~~Y~~~h~ee 119 (1109)
T TIGR00395 42 KFFLTVAYPYLNGVLHAGHLRTFTIPEVVARFERMKGKNVLFPLGFHV--TGTPILGLAELIKRRDEKTIKVYTEVHAEE 119 (1109)
T ss_pred CHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCEECCCCCCCC--CCCCHHHHHHHHHHCCHHHHHHHHCCCCHH
T ss_conf 032015765567442123344333131588766106840022465443--586278899997300604678852057513
Q ss_pred CCCCHHHCCCC----CHHHHHHHH---HHHHHH-----HHHCC--CCHHHHHHHH--HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 00660110241----000012788---888757-----64134--3023799999--99789988754555887087521
Q gi|254780285|r 194 SDLPEGYYPGV----YLKHVGKEL---ADKYSS-----ELLNF--PEEKWLPIVK--DYSVQAMMKIIRDDLKALNIQHD 257 (586)
Q Consensus 194 ~~~~e~~~~~~----y~~~~~~e~---~~~~~~-----~~~~~--~e~~~~~~~~--~~~~~~~~~~~~~~l~~l~i~fD 257 (586)
.++.+..-... ..+..++.. +++-+- .++++ +.++. -.+. ++.++..-+..++.++++|-.-|
T Consensus 120 eeikeetPaekDheDvtkfkakkskaaakkGrGkYqfeimlqlGiP~eel-~~l~dpe~iveYFs~~~~~~~~~~G~siD 198 (1109)
T TIGR00395 120 EEIKEETPAEKDHEDVTKFKAKKSKAAAKKGRGKYQFEIMLQLGIPREEL-LKLTDPEYIVEYFSREAESALKSMGYSID 198 (1109)
T ss_pred HHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHH-HHHCCCCEEEECCCHHHHHHHHHCCCEEE
T ss_conf 44301577644414566665444356664178731245633137987999-72048430210388779999986488052
Q ss_pred ---CEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf ---000158873010457999999999749851134
Q gi|254780285|r 258 ---IFISEDDFHRGDPSPIRDIIDNLARQGYVYEGI 290 (586)
Q Consensus 258 ---~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~ 290 (586)
.|.-. |....-...|.-=+.+|++.|++..|.
T Consensus 199 WRR~F~Tt-Dan~~Y~~FI~WQ~~KLk~~Gli~kG~ 233 (1109)
T TIGR00395 199 WRREFKTT-DANPVYDRFIEWQIRKLKELGLIVKGE 233 (1109)
T ss_pred CCCCCEEC-CCCHHHHHHHHHHHHHHHHCCCEEECC
T ss_conf 25552125-874666789999999998659544178
No 83
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=95.23 E-value=0.26 Score=28.17 Aligned_cols=102 Identities=16% Similarity=0.143 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHH-HCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q ss_conf 88888889999875332-00246832234223552114998999999998421899999998528127999999999988
Q gi|254780285|r 454 VQYAYARCRSIFRQAKD-IFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVF 532 (586)
Q Consensus 454 iqYa~aR~~SIlrKa~~-~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~F 532 (586)
+.=++-|+..|+.|+.. .... ++.....++.|+.|...+..+..-+..+.....=......|..|...-
T Consensus 580 l~~a~kRv~nIl~k~~~~~~~~----------v~~~Lf~~~~E~~L~~a~~~~~~~~~~a~a~~~y~~al~~L~~L~~pI 649 (691)
T COG0751 580 LAAANKRVSNILAKAEKKLSGT----------VDPSLFEEDAEKALFEALQALKPKVAEALAEKDYQDALAALAELRPPI 649 (691)
T ss_pred HHHHHHHHHHHHHHCCCCCCCC----------CCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999989999987345556776----------696785288999999999997777888874235999999999854269
Q ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9998706866666543578789999999999999999999
Q gi|254780285|r 533 HGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINS 572 (586)
Q Consensus 533 n~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~ 572 (586)
..|+++.. +.++|+++|.-||+|....+..+..
T Consensus 650 d~FFd~Vm-------Vm~eD~~iR~NRLalL~~l~~~f~~ 682 (691)
T COG0751 650 DEFFDNVM-------VMAEDEALRNNRLALLSKLRELFLK 682 (691)
T ss_pred HHHHCCCE-------EECCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 99856726-------6478789999999999999999998
No 84
>KOG0434 consensus
Probab=94.72 E-value=0.18 Score=29.21 Aligned_cols=84 Identities=25% Similarity=0.385 Sum_probs=54.8
Q ss_pred CCCH-HHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH--CCHH
Q ss_conf 7761-368999999999722663451153110110122110000012233024567777763211234555420--0012
Q gi|254780285|r 357 GSDH-SGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR--KNSE 433 (586)
Q Consensus 357 ~~~Q-~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~--~~~~ 433 (586)
|-|| .++|=.+.-+..+| +.++.+..+.+..+.|.+||+ |||+|.-|+-.-..++++-|.+|+|-.++.. -+..
T Consensus 561 GlDQTRGWFYTL~VlsT~L-F~kppfkNvIvnGlVLAeDG~--KMSKrlkNYPdP~~iinkYGADalRlYLInSPVvraE 637 (1070)
T KOG0434 561 GLDQTRGWFYTLLVLSTAL-FGKPPFKNVIVNGLVLAEDGK--KMSKRLKNYPDPSLIINKYGADALRLYLINSPVVRAE 637 (1070)
T ss_pred CCCCCCCHHHHHHHHHHHH-CCCCCCHHEEEEEEEEECCCH--HHHHHHHCCCCHHHHHHHHCCHHEEEEEECCCCCCCC
T ss_conf 3200220455799999987-179852221670168812107--7766531598878988762620225665158410043
Q ss_pred HHHHHHHHHH
Q ss_conf 3334477765
Q gi|254780285|r 434 LLDFDFCKVK 443 (586)
Q Consensus 434 ~~~Fd~d~~l 443 (586)
.+.|.-+-+.
T Consensus 638 ~LkFkeeGVr 647 (1070)
T KOG0434 638 NLKFKEEGVR 647 (1070)
T ss_pred CCCCCHHHHH
T ss_conf 3444211189
No 85
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=93.84 E-value=0.42 Score=26.68 Aligned_cols=107 Identities=17% Similarity=0.101 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC------CCCCCC-EEEECCHHHCCCCCCCCCC
Q ss_conf 652135688899999975225554333677761368999999999722------663451-1531101101221100000
Q gi|254780285|r 328 DGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVS------EKKAQI-NVLLCELVRLYRDGMPIKM 400 (586)
Q Consensus 328 DGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg------~~~~~~-~~~~~~~v~l~~dg~~~km 400 (586)
=|-.+|-..=.|=++. +.-.+--||.||++|+..-..+++.++ +..+.. .+-. ..+.-. +|. .||
T Consensus 128 ~Gl~~YPvlqAADILl-----~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~-~~i~gL-~g~-~KM 199 (314)
T COG0180 128 IGLLTYPVLQAADILL-----YQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKV-ARLPGL-DGP-GKM 199 (314)
T ss_pred CCCHHCCHHHHHHHHH-----CCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCC-CCC-CCC
T ss_conf 1021054998887650-----26875104888539999999999998744667537860014477-746478-999-866
Q ss_pred CCCCCC-HHHHHHHHHHH----------HHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 122330-24567777763----------21123455542000123334477765
Q gi|254780285|r 401 SKRAGD-FITLRHVVDEV----------GSDSVRFMMLWRKNSELLDFDFCKVK 443 (586)
Q Consensus 401 stR~G~-~v~l~dll~ev----------g~~aiky~~L~~~~~~~~~Fd~d~~l 443 (586)
|+-.+| +|.|.|--++| +.+.+++-. .-++...-.|.|-.+.
T Consensus 200 SkS~~ns~I~L~D~~~~i~kKI~~~~td~~~~~~~~~-~g~Pe~~~l~~~~~~~ 252 (314)
T COG0180 200 SKSDPNSAIFLLDDPKTIRKKIKKAATDGPTLIEYRK-GGKPEVCNLFEIYSAF 252 (314)
T ss_pred CCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCHHHHHHHHH
T ss_conf 6669998245049989999999985269987502589-9999856499999986
No 86
>KOG1147 consensus
Probab=92.28 E-value=0.87 Score=24.45 Aligned_cols=42 Identities=29% Similarity=0.443 Sum_probs=33.3
Q ss_pred HHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 7545558870875210001588730104579999999997498511
Q gi|254780285|r 243 KIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYE 288 (586)
Q Consensus 243 ~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e 288 (586)
..+.+++..|||..|.|.+-|+|. ..+.+.-.+|...|.+|-
T Consensus 253 ~~IleDl~~LgIkpd~~TyTSDyF----~~i~dycv~likeGKAYv 294 (712)
T KOG1147 253 DVILEDLSLLGIKPDRVTYTSDYF----DEIMDYCVKLIKEGKAYV 294 (712)
T ss_pred HHHHHHHHHHCCCCCEEEECHHHH----HHHHHHHHHHHHCCCCCC
T ss_conf 999877887085764445313559----999999999986374313
No 87
>TIGR00467 lysS_arch lysyl-tRNA synthetase; InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and some eubacteria . Moreover in some eubacteria there is a gene X, which is similar to a part of lysyl-tRNA synthetase from class II. Lysyl-tRNA synthetase is duplicated in some species with, for example in E. coli, as a constitutive gene (lysS) and an induced one (lysU). A refined crystal structures shows that the active site of lysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding .; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=92.03 E-value=0.93 Score=24.26 Aligned_cols=80 Identities=18% Similarity=0.255 Sum_probs=57.9
Q ss_pred HHHHHHHHH-HHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHH
Q ss_conf 999999999-72266345115311011012211000001223302456777776321123455542000--123334477
Q gi|254780285|r 364 VKRLEAVAA-AVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN--SELLDFDFC 440 (586)
Q Consensus 364 ~~~v~~~~~-~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~--~~~~~Fd~d 440 (586)
+..-..+++ ...+..+ ..+.|.++.+..+.+..+|++.+|.++.+.|.++-.-...+||..+..++ ...+.||.+
T Consensus 248 ~d~~~~~~~~~~~~~pp--~~~~~~~~~~~~gd~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~d~~ 325 (539)
T TIGR00467 248 YDTGVLIAKEIFDYEPP--YPVPYEWISLKGGDKGGPLSSSKGDVLPVKDWLEVYPPEILRFLLLRTKPNTEKHIDFDLG 325 (539)
T ss_pred CHHHHHHHHHHHCCCCC--CCEEEEEEEEECCCCCCCCCCCCCCEEEHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCHH
T ss_conf 10246788887505788--4202324565025423323234563232334544214357555453116775212202402
Q ss_pred HHHHH
Q ss_conf 76532
Q gi|254780285|r 441 KVKEQ 445 (586)
Q Consensus 441 ~~l~~ 445 (586)
.+..+
T Consensus 326 ~~~d~ 330 (539)
T TIGR00467 326 KIPDL 330 (539)
T ss_pred HHHHH
T ss_conf 32356
No 88
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=89.86 E-value=0.39 Score=26.94 Aligned_cols=63 Identities=30% Similarity=0.237 Sum_probs=44.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCC-CCCEEEECCHHHCCCCCCCCCCCCCCCC-HHHHHHHHHHH
Q ss_conf 33677761368999999999722663-4511531101101221100000122330-24567777763
Q gi|254780285|r 353 IYVMGSDHSGYVKRLEAVAAAVSEKK-AQINVLLCELVRLYRDGMPIKMSKRAGD-FITLRHVVDEV 417 (586)
Q Consensus 353 iyVv~~~Q~~h~~~v~~~~~~lg~~~-~~~~~~~~~~v~l~~dg~~~kmstR~G~-~v~l~dll~ev 417 (586)
+-++|+||..|+.--..+++.+|... .....++..++.. .+|. .|||+-.|+ .|.++|--++|
T Consensus 152 i~~gG~DQ~~~~~l~rdl~~k~~~~~~~~p~~l~~~ll~~-~~G~-~KMSKS~~nsaI~L~d~~~~i 216 (291)
T pfam00579 152 LQPGGSDQWGHIELGRDLARRFNKKVFKKPVGLTNPLLTG-LDGG-KKMSKSAGNSAIFLDDEKESV 216 (291)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCC-CCCC-CCCCCCCCCCEEECCCCHHHH
T ss_conf 5665600489999999999995785678834874166226-6787-663678999726667986789
No 89
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=89.13 E-value=1.1 Score=23.64 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEECH
Q ss_conf 9978998875455588708752100015
Q gi|254780285|r 235 DYSVQAMMKIIRDDLKALNIQHDIFISE 262 (586)
Q Consensus 235 ~~~~~~~~~~~~~~l~~l~i~fD~~~~E 262 (586)
.--+++.++.+++.|..|.-.||+...|
T Consensus 102 ~~~~d~~~~~i~eSle~L~~~Yd~vv~E 129 (502)
T TIGR00313 102 KNKVDFLLKAIKESLEILAEEYDLVVIE 129 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 7999999999999998752028889982
No 90
>cd02156 nt_trans nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=88.90 E-value=0.4 Score=26.87 Aligned_cols=41 Identities=32% Similarity=0.516 Sum_probs=31.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHH
Q ss_conf 34432244117777785689999999985066641020147753145
Q gi|254780285|r 128 VSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQI 174 (586)
Q Consensus 128 sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~ 174 (586)
..+++..|+|+||.|-......+++ +++.+...+.+++.+.
T Consensus 2 ~~~g~fd~~H~GH~~l~~~~~~~~~------~~~~~~~~~~~~~~~~ 42 (147)
T cd02156 2 LAPGPFDPLHLGHLRLIERADELAR------YGGDELIVIDDTDPPI 42 (147)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHH------HCCCCEEEEECCCCCH
T ss_conf 8986048767899999999999999------7699289997899914
No 91
>cd00806 TrpRS_core Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer, which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=88.44 E-value=0.38 Score=27.01 Aligned_cols=80 Identities=21% Similarity=0.223 Sum_probs=48.2
Q ss_pred CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC------CCCCEEEECCHHHCCCCCCCCC
Q ss_conf 521356---8889999997522555433367776136899999999972266------3451153110110122110000
Q gi|254780285|r 329 GSYTYF---AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEK------KAQINVLLCELVRLYRDGMPIK 399 (586)
Q Consensus 329 Gt~~Y~---t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~------~~~~~~~~~~~v~l~~dg~~~k 399 (586)
|..+|- +.||-+. ++| +=.+|.||..|+.-...++..+++. .+...+....++.-..||. .|
T Consensus 122 g~~~YP~lQaaDil~~------~~d--~vp~G~DQ~~h~~laRdia~k~n~~~~~~~~~P~~~~~~~~~i~~l~~g~-~K 192 (282)
T cd00806 122 GLLTYPVLQAADILLY------QAD--LVPVGEDQDPHLELTRDIARRFNKLYGEIFPKPEALISKGARIPSLTGPS-KK 192 (282)
T ss_pred HHHHCHHHHHHHHHHH------CCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCCCCCCC-CC
T ss_conf 5340539888784662------565--05222047999999999999986550653466411015555166788976-75
Q ss_pred CCCCCCC-HHHHHHHHHHH
Q ss_conf 0122330-24567777763
Q gi|254780285|r 400 MSKRAGD-FITLRHVVDEV 417 (586)
Q Consensus 400 mstR~G~-~v~l~dll~ev 417 (586)
||+-.+| .|.+.|--++|
T Consensus 193 MSKS~~ns~I~l~D~p~~I 211 (282)
T cd00806 193 MSKSDPNTIIFLLDSPKTI 211 (282)
T ss_pred CCCCCCCCCEEECCCHHHH
T ss_conf 5568999744541768999
No 92
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=88.07 E-value=0.46 Score=26.39 Aligned_cols=81 Identities=26% Similarity=0.270 Sum_probs=49.5
Q ss_pred CCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE------CCHHHCCCCCCC
Q ss_conf 4652135---6888999999752255543336777613689999999997226634511531------101101221100
Q gi|254780285|r 327 SDGSYTY---FAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLL------CELVRLYRDGMP 397 (586)
Q Consensus 327 sDGt~~Y---~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~------~~~v~l~~dg~~ 397 (586)
+=|-++| .+.||-.. ++| .--||.||.+|..-...++..++..-...-.+. .+-+.-..||+
T Consensus 130 ~~GL~~YPvLmAADILly------~a~--~VPVGeDQ~QHlEltRdiA~rFN~~yg~~f~~P~~~i~~~~~~i~gldgk- 200 (328)
T PRK12556 130 NMGLYTYPILMAADILLF------QAT--HVPVGKDQIQHIEIARDIATYFNHTFGTTFTLPEYVIQEEGAILPGLDGR- 200 (328)
T ss_pred CCCCCCCCHHHHCHHHHC------CCC--EECCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEECCCCC-
T ss_conf 554566507653311302------664--50468106999999999999998755755678643337654331089987-
Q ss_pred CCCCCCCCCHHHHHHHHHHH
Q ss_conf 00012233024567777763
Q gi|254780285|r 398 IKMSKRAGDFITLRHVVDEV 417 (586)
Q Consensus 398 ~kmstR~G~~v~l~dll~ev 417 (586)
|||+-.||.|.|.|--++|
T Consensus 201 -KMSKS~~n~I~L~D~~d~I 219 (328)
T PRK12556 201 -KMSKSYGNVIPLFAEQEKL 219 (328)
T ss_pred -CCCCCCCCCCCCCCCHHHH
T ss_conf -6556878813476899999
No 93
>cd00805 TyrRS_core Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer, which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=88.06 E-value=0.66 Score=25.31 Aligned_cols=52 Identities=33% Similarity=0.286 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 336777613689999999997226634511531101101221100000122330245
Q gi|254780285|r 353 IYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFIT 409 (586)
Q Consensus 353 iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~ 409 (586)
+-++|.||.+|+.....++..+++.++.. +...++ .+.||+ |||+-.||.+.
T Consensus 153 ~vpvG~DQ~~hiel~Rdia~r~n~~~~~~--l~~pll-~g~dG~--KMSKS~~N~i~ 204 (268)
T cd00805 153 IQLGGSDQRGNITLGRDLIRRLGYKKVVG--LTTPLL-TGLDGG--KMSKSEGNAIW 204 (268)
T ss_pred CEECCHHHHHHHHHHHHHHHHHCCCCCEE--EEECEE-ECCCCC--CCCCCCCCCCC
T ss_conf 14606008999999999999828976145--531100-089987--44678999501
No 94
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=87.96 E-value=0.48 Score=26.27 Aligned_cols=79 Identities=24% Similarity=0.296 Sum_probs=50.4
Q ss_pred CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC--CCC-----CCEEEECCHHHCCCCCCCC
Q ss_conf 521356---888999999752255543336777613689999999997226--634-----5115311011012211000
Q gi|254780285|r 329 GSYTYF---AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSE--KKA-----QINVLLCELVRLYRDGMPI 398 (586)
Q Consensus 329 Gt~~Y~---t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~--~~~-----~~~~~~~~~v~l~~dg~~~ 398 (586)
|-.+|- +.||-.. ++| +--||.||.+|+.-...++..++. ... ....-..+.+. +-||. .
T Consensus 126 Gl~~YPvLmAADILly------~a~--~VPVG~DQ~qHlELtRdiA~rfN~~yg~~~f~~P~~~~~~~~ri~-~Ldg~-~ 195 (333)
T PRK12282 126 GFLTYPVSQAADITAF------KAT--LVPVGDDQLPMIEQTNEIVRRFNHTYGTDVLVEPEALLPEAGRLP-GLDGK-A 195 (333)
T ss_pred CCCCCHHHHHHHHHHC------CCC--CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-CCCCC-C
T ss_conf 1103769860204513------788--076665259999999999999998709865688623045456672-99985-0
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 0012233024567777763
Q gi|254780285|r 399 KMSKRAGDFITLRHVVDEV 417 (586)
Q Consensus 399 kmstR~G~~v~l~dll~ev 417 (586)
|||+-.|+.|.|.|--++|
T Consensus 196 KMSKS~~n~I~L~D~~~~I 214 (333)
T PRK12282 196 KMSKSLGNAIYLSDSADTI 214 (333)
T ss_pred CCCCCCCCCEECCCCHHHH
T ss_conf 1059999962144899999
No 95
>cd00395 Tyr_Trp_RS_core Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=87.06 E-value=0.81 Score=24.67 Aligned_cols=61 Identities=28% Similarity=0.189 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHH-CCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHH-HHHHHHHH
Q ss_conf 33367776136899999999972-2663451153110110122110000012233024-56777776
Q gi|254780285|r 352 MIYVMGSDHSGYVKRLEAVAAAV-SEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFI-TLRHVVDE 416 (586)
Q Consensus 352 ~iyVv~~~Q~~h~~~v~~~~~~l-g~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v-~l~dll~e 416 (586)
.+-.+|+||..|+.....+++.+ ++.++..-+ ..++.- .+|. .|||+..||.+ .+.|--++
T Consensus 143 ~~v~~G~DQ~~~~~l~Rdia~k~~~~~~p~~l~--~~~l~~-l~G~-~KMSKS~~ns~i~l~Dsp~~ 205 (274)
T cd00395 143 DLVPGGSDQDPHIELGRDLARRFNGFKKPVALT--SPLLTG-LDGG-KKMSKSDGNAIIFLLDSPEE 205 (274)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEE--CCCCCC-CCCC-CCCCCCCCCCEEECCCCHHH
T ss_conf 545556117999999999999944999986872--377446-8997-67457899844654699999
No 96
>TIGR00440 glnS glutaminyl-tRNA synthetase; InterPro: IPR004514 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Glutaminyl-tRNA synthetase (6.1.1.18 from EC) is a class Ic synthetase and shows several similarities with glutamyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. Glutaminyl-tRNA synthetase is a relatively rare synthetase, found in the cytosolic compartment of eukaryotes, in Escherichia coli and a number of other Gram-negative bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln.; GO: 0000166 nucleotide binding, 0004819 glutamine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006425 glutaminyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=86.75 E-value=0.46 Score=26.43 Aligned_cols=19 Identities=26% Similarity=0.744 Sum_probs=16.4
Q ss_pred CCCCCCCCCHHHHHHHHHH
Q ss_conf 4432244117777785689
Q gi|254780285|r 129 SANPTGPMHVGHCRCAVVG 147 (586)
Q Consensus 129 SpNp~KplHVGHlRsaiIG 147 (586)
-|-|||=|||||..+.++-
T Consensus 6 PPEPNGYLHIGHaK~I~~N 24 (564)
T TIGR00440 6 PPEPNGYLHIGHAKSICLN 24 (564)
T ss_pred CCCCCCCEEHHHHHHHHHH
T ss_conf 8557873001024313442
No 97
>pfam00579 tRNA-synt_1b tRNA synthetases class I (W and Y).
Probab=86.74 E-value=0.67 Score=25.27 Aligned_cols=44 Identities=32% Similarity=0.389 Sum_probs=27.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHH
Q ss_conf 22344322441177777856899999999850666410201477531455
Q gi|254780285|r 126 EFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQIN 175 (586)
Q Consensus 126 E~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~ 175 (586)
=|+.--|+++||+||+=.. ..+.+ |.-.|++|+-. |+||=..++
T Consensus 8 vy~G~~PTg~lHlGhl~~~---~~~~~-lq~~g~~~~~l--iad~~a~~~ 51 (291)
T pfam00579 8 VYTGFDPTGPLHLGYLVPL---MKLVQ-FQQAGHEVFFL--IGDLTAIIG 51 (291)
T ss_pred EEEEECCCCHHHHHHHHHH---HHHHH-HHHCCCCEEEE--ECCCEEECC
T ss_conf 9973488963077989999---99999-99789909999--738331334
No 98
>KOG1148 consensus
Probab=84.84 E-value=0.94 Score=24.23 Aligned_cols=61 Identities=28% Similarity=0.508 Sum_probs=44.0
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHH----------------------------HHHHHHHHHHCCCCCCEEECCCCCC
Q ss_conf 541000223443224411777778568----------------------------9999999985066641020147753
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVV----------------------------GDTLASLMAFSGYEVTREYYINDAG 171 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiI----------------------------Gdsi~ril~~~G~~V~r~nyvgD~G 171 (586)
|.+| +--.-|-|++=|||||..-..+ =+||..|-+|+||+..+.-|--|+=
T Consensus 246 GGkV-~TRFPPEPNG~LHIGHaKAInvNFgyAk~~~G~cyLRfDDTNPEkEee~yf~sI~e~V~WLG~~P~kvTysSDyF 324 (764)
T KOG1148 246 GGKV-VTRFPPEPNGILHIGHAKAINVNFGYAKAHGGVCYLRFDDTNPEKEEEEYFESIKEMVAWLGFEPYKVTYSSDYF 324 (764)
T ss_pred CCEE-EEECCCCCCCEEEECCHHHEEECHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHH
T ss_conf 8866-771798988565632134301012446650976899627898203368999999999987187850441241679
Q ss_pred HHHHHHHHHH
Q ss_conf 1455567898
Q gi|254780285|r 172 AQINTLALSV 181 (586)
Q Consensus 172 ~Q~~~li~~~ 181 (586)
-|.-.+++.+
T Consensus 325 dqLy~~av~L 334 (764)
T KOG1148 325 DQLYELAVEL 334 (764)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 99
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=83.36 E-value=0.8 Score=24.72 Aligned_cols=80 Identities=21% Similarity=0.286 Sum_probs=47.3
Q ss_pred CCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC------CCCEEE-ECC-HHHCCCCCC
Q ss_conf 652135---688899999975225554333677761368999999999722663------451153-110-110122110
Q gi|254780285|r 328 DGSYTY---FAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKK------AQINVL-LCE-LVRLYRDGM 396 (586)
Q Consensus 328 DGt~~Y---~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~------~~~~~~-~~~-~v~l~~dg~ 396 (586)
=|-.+| .+.||-+. +++.+ -||.||.+|+.....++..++..- +.-.+- ... ...|..+++
T Consensus 120 ~gl~~YP~lqaADIl~~------~a~~V--PvG~DQ~~h~el~rdia~~fN~~yg~~f~~P~~~~~~~~~~i~~L~~~~~ 191 (325)
T PRK00927 120 AGLFGYPVLMAADILLY------KADLV--PVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMSLQDPTK 191 (325)
T ss_pred CHHHCCCHHHHHHHHHH------CCCCC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 01120729898888862------78715--43421499999999999999987140526775500777660678989551
Q ss_pred CCCCCCCCCC---HHHHHHHHHHH
Q ss_conf 0000122330---24567777763
Q gi|254780285|r 397 PIKMSKRAGD---FITLRHVVDEV 417 (586)
Q Consensus 397 ~~kmstR~G~---~v~l~dll~ev 417 (586)
|||+-.|| .|.|.|--++|
T Consensus 192 --KMSKS~~n~~s~I~l~d~~~~i 213 (325)
T PRK00927 192 --KMSKSDGNDNSTINLLDDPKTI 213 (325)
T ss_pred --CCCCCCCCCCCEEECCCCHHHH
T ss_conf --0144679976556513899999
No 100
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=82.15 E-value=0.77 Score=24.84 Aligned_cols=72 Identities=15% Similarity=0.163 Sum_probs=49.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH----HCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHH
Q ss_conf 5543336777613689999999997----226634511531101101221100000122330-24567777763211234
Q gi|254780285|r 349 FDNMIYVMGSDHSGYVKRLEAVAAA----VSEKKAQINVLLCELVRLYRDGMPIKMSKRAGD-FITLRHVVDEVGSDSVR 423 (586)
Q Consensus 349 ~d~~iyVv~~~Q~~h~~~v~~~~~~----lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~-~v~l~dll~evg~~aik 423 (586)
.-.++-.+|.||..||.-...++.. +|+.++...|..+ +-.| .+| |||+-+++ .|.+.|--++|.. -||
T Consensus 204 ~~~cLiP~giDQDP~fRltRDiA~r~~~~lg~~kPa~ih~~f-lpgL-~G~---KMSsS~p~saI~ltDtp~~ikk-KIk 277 (369)
T PRK12285 204 PKPVVVPVGIDQDPHIRLTRDIAERMRISLGFIKPASTYHKF-MTGL-TGG---KMSSSKPESAIYLTDDPETAKK-KIK 277 (369)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCC-CCCC-CCC---CCCCCCCCCEEEECCCHHHHHH-HHH
T ss_conf 863265403454468899998888740114888727775114-5677-889---8768999853685089999999-999
Q ss_pred HHH
Q ss_conf 555
Q gi|254780285|r 424 FMM 426 (586)
Q Consensus 424 y~~ 426 (586)
|+.
T Consensus 278 ~Af 280 (369)
T PRK12285 278 NAL 280 (369)
T ss_pred HHH
T ss_conf 854
No 101
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=81.95 E-value=1.8 Score=22.29 Aligned_cols=78 Identities=29% Similarity=0.300 Sum_probs=49.4
Q ss_pred CCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCC-----CCC
Q ss_conf 52135---6888999999752255543336777613689999999997226634511531101101221100-----000
Q gi|254780285|r 329 GSYTY---FAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMP-----IKM 400 (586)
Q Consensus 329 Gt~~Y---~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~-----~km 400 (586)
|-.+| .+.||-+. ++| +.++|.||..|+.-...+++.+|+.++..-+ .-++. +.+|.. .||
T Consensus 153 g~~~YPvlQaaDil~~------~ad--i~~~G~DQ~~~~~L~Rdia~rf~~~~p~~l~--~p~l~-gl~g~~~~~~~~KM 221 (333)
T PRK08560 153 SKLVYPLMQVADIFYL------DVD--IAVGGMDQRKAHMLAREVLPKLGYKKPVAIH--TPLLT-GLDGGGEVLAEIKM 221 (333)
T ss_pred EEEECHHHHHHHHHHC------CCC--CCCCCCCHHHHHHHHHHHHHHCCCCCCEEEE--CCCCC-CCCCCCCCCCCCCC
T ss_conf 1231427765068752------799--5531543089999999999983999975752--57545-68787777998867
Q ss_pred CCC-CCCHHHHHHHHHHH
Q ss_conf 122-33024567777763
Q gi|254780285|r 401 SKR-AGDFITLRHVVDEV 417 (586)
Q Consensus 401 stR-~G~~v~l~dll~ev 417 (586)
|+- -++.|.+.|--++|
T Consensus 222 SkS~~~~~I~l~D~~~~i 239 (333)
T PRK08560 222 SKSKPGSAIFVHDSPEEI 239 (333)
T ss_pred CCCCCCCCEEECCCHHHH
T ss_conf 889999947415899999
No 102
>TIGR00233 trpS tryptophanyl-tRNA synthetase; InterPro: IPR002306 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Tryptophanyl-tRNA synthetase (6.1.1.2 from EC) is an alpha2 dimer that belongs to class Ib. The crystal structure of tryptophanyl-tRNA synthetase is known .; GO: 0000166 nucleotide binding, 0004830 tryptophan-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006436 tryptophanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=80.76 E-value=1.1 Score=23.87 Aligned_cols=90 Identities=16% Similarity=0.067 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHH-HHHHC----CCCCCCCCCCCCHHHHHHHHHHHHHHHC------CCCCCCEE-EECCHHHCCCC
Q ss_conf 4652135688899999-97522----5554333677761368999999999722------66345115-31101101221
Q gi|254780285|r 327 SDGSYTYFAADLAYFK-CKYER----GFDNMIYVMGSDHSGYVKRLEAVAAAVS------EKKAQINV-LLCELVRLYRD 394 (586)
Q Consensus 327 sDGt~~Y~t~DiA~~~-~k~e~----~~d~~iyVv~~~Q~~h~~~v~~~~~~lg------~~~~~~~~-~~~~~v~l~~d 394 (586)
+=|-..|-.-=.|=++ +.++. .--.++==||.||++|+.--.-+++.++ +..+...| -...-++-..+
T Consensus 140 ~~Gl~~yP~lmAADIL~~~~d~~~~~~~~~c~VPVG~DQ~qHleLTRD~A~Rf~~~f~~~f~~P~~~~~~~~~~l~gl~~ 219 (366)
T TIGR00233 140 SIGLLSYPVLMAADILLYQADEILGPEKKPCLVPVGIDQDQHLELTRDLAERFNKKFKNFFKLPESLISKFGARLMGLQG 219 (366)
T ss_pred CEEEECCCHHHHHHHHCCCCHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCC
T ss_conf 11201264777634313566012579997058500588852688988999999887133235860233101344668787
Q ss_pred CCCCCCCCCCCC---HHHHHHHHHHH
Q ss_conf 100000122330---24567777763
Q gi|254780285|r 395 GMPIKMSKRAGD---FITLRHVVDEV 417 (586)
Q Consensus 395 g~~~kmstR~G~---~v~l~dll~ev 417 (586)
++ .|||+-.-+ +|+|.|-=++|
T Consensus 220 P~-kKMSkS~p~~~~~IfL~D~p~~~ 244 (366)
T TIGR00233 220 PK-KKMSKSDPNQNSAIFLTDTPKQI 244 (366)
T ss_pred CC-CCCCCCCCCCCCEECCCCCHHHH
T ss_conf 85-35555678888202079898999
No 103
>cd07962 Anticodon_Ia_Val Anticodon-binding domain of valyl tRNA synthetases. This domain is found in valyl tRNA synthetases (ValRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ValRS catalyzes the transfer of valine to the 3'-end of its tRNA.
Probab=80.74 E-value=4 Score=19.85 Aligned_cols=82 Identities=10% Similarity=0.112 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4998999999998421899999998528127999999999-988999870686666654357878999999999999999
Q gi|254780285|r 490 EFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLA-SVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVAS 568 (586)
Q Consensus 490 ~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La-~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~ 568 (586)
..++.++-++.++...-..+.++.+++..|..+..+++.. ..|++||-.- ..+ .+..++.+ .|.........
T Consensus 39 ~~~~~Dkwil~~l~~~~~~i~~~~~~~~f~~a~~~l~~F~~~~ls~~Yie~-~K~---rl~~~~~~---~~~~~~~~l~~ 111 (135)
T cd07962 39 SLSLADRWILSRLNKTVEEVTEALENYRFSEAATALYEFFWNDFCDWYLEL-VKP---RLYGEDEE---EKKAARATLYY 111 (135)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHCCCCHH---HHHHHHHHHHH
T ss_conf 077999999999999999999999865899999999999899998999999-799---87299789---99999999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999873158
Q gi|254780285|r 569 IINSGLNIIG 578 (586)
Q Consensus 569 vL~~~L~LLG 578 (586)
+|+..+.+|.
T Consensus 112 ~l~~~l~lla 121 (135)
T cd07962 112 VLETILRLLH 121 (135)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 104
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=79.89 E-value=1.2 Score=23.53 Aligned_cols=76 Identities=26% Similarity=0.283 Sum_probs=46.8
Q ss_pred CCCCHHH---HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEE----CC--HHHCCCCCC
Q ss_conf 4652135---6888999999752255543336777613689999999997226634-511531----10--110122110
Q gi|254780285|r 327 SDGSYTY---FAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKA-QINVLL----CE--LVRLYRDGM 396 (586)
Q Consensus 327 sDGt~~Y---~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~-~~~~~~----~~--~v~l~~dg~ 396 (586)
+=|-++| .+.||-.. +--+--||.||.+|...-..++..++..-. .+-.+. -+ .+.-+.||+
T Consensus 130 ~~GLf~YPVLMAADILly--------~A~~VPVG~DQ~QHlEltRdIA~rFN~~YG~e~F~~Pea~i~e~~a~lpGlDGr 201 (436)
T PRK12284 130 TAGLFMYPVLMAADILMF--------NAHKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDGR 201 (436)
T ss_pred CCCCCCCCHHHHHHHHHC--------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 431224707888767740--------687512675569999999999999998708836378844236887722499987
Q ss_pred CCCCCCCCCCHHHHHH
Q ss_conf 0000122330245677
Q gi|254780285|r 397 PIKMSKRAGDFITLRH 412 (586)
Q Consensus 397 ~~kmstR~G~~v~l~d 412 (586)
|||+--||+|.+-+
T Consensus 202 --KMSKSy~NtI~Lf~ 215 (436)
T PRK12284 202 --KMSKSYDNTIPLFS 215 (436)
T ss_pred --CCCCCCCCCCCCCC
T ss_conf --05578898064878
No 105
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=73.00 E-value=3.2 Score=20.52 Aligned_cols=19 Identities=32% Similarity=0.702 Sum_probs=14.9
Q ss_pred CCCCCCCCCCCHHHHHHHH
Q ss_conf 2344322441177777856
Q gi|254780285|r 127 FVSANPTGPMHVGHCRCAV 145 (586)
Q Consensus 127 ~sSpNp~KplHVGHlRsai 145 (586)
+|..=|++.+|+||.-.++
T Consensus 6 lSGiqPTG~lHLGNylGai 24 (398)
T PRK12283 6 LSGMRPTGRLHLGHYHGVL 24 (398)
T ss_pred EECCCCCCCCCHHHHHHHH
T ss_conf 5271789986168899999
No 106
>cd07960 Anticodon_Ia_Ile_BEm Anticodon-binding domain of bacterial and eukaryotic mitochondrial isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial and eukaryotic mitochondrial members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=72.08 E-value=6.7 Score=18.26 Aligned_cols=84 Identities=14% Similarity=0.087 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 4998999999998421899999998528127999999999-988999870686666654357878999999999999999
Q gi|254780285|r 490 EFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLA-SVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVAS 568 (586)
Q Consensus 490 ~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La-~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~ 568 (586)
.++..++-++-.+..+-..+.++.+++.-|..++-+++.. ..|++||-.-. .+.+-.-..+++. |.+--.....
T Consensus 41 ~l~~lD~wiLs~l~~~~~~v~~~~~~y~f~~~~~~l~~F~~~~ls~~Yle~~-K~rly~~~~~~~~----r~~~~~~L~~ 115 (180)
T cd07960 41 ELLELDRYALHRLNELIKEVREAYENYEFHKVYQALNNFCTVDLSAFYLDII-KDRLYCDAKDSLE----RRSAQTVLYH 115 (180)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHCCCCCCHH----HHHHHHHHHH
T ss_conf 2879899999999999999999998389999999999994021035999997-7976158888389----9999999999
Q ss_pred HHHHHHHHCC
Q ss_conf 9999873158
Q gi|254780285|r 569 IINSGLNIIG 578 (586)
Q Consensus 569 vL~~~L~LLG 578 (586)
+|.+.|.+|.
T Consensus 116 vl~~~l~lla 125 (180)
T cd07960 116 ILDALLKLLA 125 (180)
T ss_pred HHHHHHHHHC
T ss_conf 9999898744
No 107
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=71.67 E-value=4.1 Score=19.78 Aligned_cols=69 Identities=22% Similarity=0.267 Sum_probs=42.3
Q ss_pred CCCEEEEEECHHHHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 797687888888999999999856221388765655410002234432244-1177777856899999999850666410
Q gi|254780285|r 85 GKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGP-MHVGHCRCAVVGDTLASLMAFSGYEVTR 163 (586)
Q Consensus 85 gpGfIN~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~Kp-lHVGHlRsaiIGdsi~ril~~~G~~V~r 163 (586)
..|+|+..-+.+.+.+.+. +++ +-=|..--||.| |||||+=.- -.-|-++-+||+|+-
T Consensus 11 ~Rg~~~~~t~~e~~~~l~~----------------~~~-~~~y~G~DPTa~sLH~Ghlv~l----~~L~~fq~~Gh~~i~ 69 (402)
T PRK05912 11 KRGLVEQITDEELLAKLLE----------------GRP-LRIKLGFDPTAPDLHLGHLVVL----LKLRRFQDLGHKPIF 69 (402)
T ss_pred HCCCEEECCCHHHHHHHHH----------------CCC-EEEEEEECCCCCCCCHHHHHHH----HHHHHHHHCCCCEEE
T ss_conf 7798256598999999961----------------898-0799814699875206529999----999999986996499
Q ss_pred EECCCCCCHHHHH
Q ss_conf 2014775314555
Q gi|254780285|r 164 EYYINDAGAQINT 176 (586)
Q Consensus 164 ~nyvgD~G~Q~~~ 176 (586)
-|||+=.++|.
T Consensus 70 --lvGg~T~~IGD 80 (402)
T PRK05912 70 --LIGDFTGMIGD 80 (402)
T ss_pred --EECCCCEECCC
T ss_conf --96775245018
No 108
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=66.39 E-value=6.3 Score=18.43 Aligned_cols=44 Identities=20% Similarity=0.278 Sum_probs=32.1
Q ss_pred CCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 2344322-4411777778568999999998506664102014775314555
Q gi|254780285|r 127 FVSANPT-GPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINT 176 (586)
Q Consensus 127 ~sSpNp~-KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~ 176 (586)
|..--|| ..||+||+=.- -.-|-++-+||+|+ --|||+=.++|.
T Consensus 41 y~GfDPTa~sLHlGhlv~l----~~L~~fq~~Gh~~i--~liGg~T~~IGD 85 (405)
T PRK13354 41 KLGLDPTAPDIHIGHLVVL----RKLKQFQDAGHRAV--ILIGDFTGKIGD 85 (405)
T ss_pred EEEECCCCCCCHHHHHHHH----HHHHHHHHCCCCEE--EEECCCCCCCCC
T ss_conf 9954699885207649999----99999998699479--996786542569
No 109
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=65.12 E-value=3.1 Score=20.63 Aligned_cols=17 Identities=12% Similarity=0.131 Sum_probs=8.9
Q ss_pred HHHHHHCCCCCCEEECCC
Q ss_conf 999985066641020147
Q gi|254780285|r 151 ASLMAFSGYEVTREYYIN 168 (586)
Q Consensus 151 ~ril~~~G~~V~r~nyvg 168 (586)
++-++-+|-+++- -|+|
T Consensus 124 a~el~~lGvd~I~-vH~G 140 (429)
T PRK07028 124 AVELEELGVDIIN-VHVG 140 (429)
T ss_pred HHHHHHCCCCEEE-EEEE
T ss_conf 9999970998899-9762
No 110
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; InterPro: IPR012818 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiE subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=64.23 E-value=2.2 Score=21.58 Aligned_cols=66 Identities=23% Similarity=0.170 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHH
Q ss_conf 88888888999987533200246832234223552114998999-999998421899999998-5281279999999999
Q gi|254780285|r 453 YVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSEL-QLIVHLAEYPRVIENATI-AQEPYKLAFYLYDLAS 530 (586)
Q Consensus 453 YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~-~L~~~l~~f~~vi~~a~~-~~~P~~l~~Yl~~La~ 530 (586)
-+|||.||+. .+++....-... -...++..+ .++..+..-..++.-.-. ...|+.||++|.+.-.
T Consensus 104 S~Q~A~ARlg------------~~w~d~~~~S~H-GR~~~~~~~~~~~~~~~~~r~~~~lTd~~~~~P~~iA~~L~~~g~ 170 (210)
T TIGR02467 104 SVQLAFARLG------------LPWQDAVLISLH-GRELDEEDKKLLLALLRGARKVAVLTDPARNGPAEIARELIELGL 170 (210)
T ss_pred HHHHHHHHCC------------CCHHHEEEEEEE-ECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCC
T ss_conf 8999999707------------881134887874-048880456889998507987999528746697999999997499
Q ss_pred H
Q ss_conf 8
Q gi|254780285|r 531 V 531 (586)
Q Consensus 531 ~ 531 (586)
.
T Consensus 171 ~ 171 (210)
T TIGR02467 171 G 171 (210)
T ss_pred C
T ss_conf 9
No 111
>KOG2023 consensus
Probab=61.87 E-value=5.1 Score=19.07 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24436788888888999987533
Q gi|254780285|r 447 KENPVFYVQYAYARCRSIFRQAK 469 (586)
Q Consensus 447 ~~nt~~YiqYa~aR~~SIlrKa~ 469 (586)
+.+-.||.|+.|.||++|++|..
T Consensus 594 ~~gF~P~~~~Vy~Rc~~il~~t~ 616 (885)
T KOG2023 594 GVGFLPYAQPVYQRCFRILQKTL 616 (885)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 53666557799999999999999
No 112
>KOG4368 consensus
Probab=60.12 E-value=2 Score=21.89 Aligned_cols=73 Identities=19% Similarity=0.258 Sum_probs=49.4
Q ss_pred ECHHHHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCH
Q ss_conf 88889999999998562213887656554100022344322441177777856899999999850666410201477531
Q gi|254780285|r 93 LSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGA 172 (586)
Q Consensus 93 l~~~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~ 172 (586)
|+-.-+.+.|..|.. +..+..+..+|+.+.+|.---+.-++-.|||||-|--|.----|+ .--+|.||||-.
T Consensus 101 l~~~~~~~~l~~~~~---~c~kd~is~~k~w~f~~~~s~~~~e~~~~~l~n~~~~~~~~~~lr-----lh~~ylind~~~ 172 (757)
T KOG4368 101 LDMNEFDNLLQPIID---TCTKDAISAGKNWMFSNAKSPPHCELMAGHLRNRITADGAHFELR-----LHLIYLINDVLH 172 (757)
T ss_pred CCHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHH-----HHHHHHHHHHHH
T ss_conf 788999989999987---776999988777666407881689999999986500244441131-----156887778999
Q ss_pred H
Q ss_conf 4
Q gi|254780285|r 173 Q 173 (586)
Q Consensus 173 Q 173 (586)
|
T Consensus 173 h 173 (757)
T KOG4368 173 H 173 (757)
T ss_pred H
T ss_conf 8
No 113
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit; InterPro: IPR005969 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite .; GO: 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=59.93 E-value=11 Score=16.67 Aligned_cols=134 Identities=25% Similarity=0.241 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
Q ss_conf 99999999999860488821224527741788012741104899988882899799999999834578973148854797
Q gi|254780285|r 8 SSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDSVFIAGKG 87 (586)
Q Consensus 8 ~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~vevagpG 87 (586)
+.++.+.|+....+. ..+-|+|.+ +|. +..|+-+|..+|+.....- +++|--+
T Consensus 70 ~~rl~~tv~~~d~~~-----~PdlIvv~p---------sCs-----s~lLQEDL~~~a~~~g~~t-------~~~v~~~- 122 (562)
T TIGR01278 70 QARLVDTVRRVDERE-----KPDLIVVTP---------SCS-----SSLLQEDLGNLAAAAGLDT-------KSKVLVA- 122 (562)
T ss_pred HHHHHHHHHHHHHCC-----CCCEEEECC---------CHH-----HHHHHHCHHHHHHHHCCCC-------CCCCCHH-
T ss_conf 574179898651035-----886799822---------201-----4788716899999826335-------6531030-
Q ss_pred EEE-EEEC-----HHHHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHCCCC
Q ss_conf 687-8888-----889999999998562213887656554100022344322441177-777856899999999850666
Q gi|254780285|r 88 FIN-LYLS-----PSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVG-HCRCAVVGDTLASLMAFSGYE 160 (586)
Q Consensus 88 fIN-~~l~-----~~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVG-HlRsaiIGdsi~ril~~~G~~ 160 (586)
=+| |+.. ++.|.++++.+.....+-|.-. +--=+-.|+|+=||.-.| |.|.-.+ +|.|||+-+|=.
T Consensus 123 ~vn~yR~~E~~A~~~~L~~lV~~~~~~~~~~g~L~-----T~~T~~psVNllGp~~LGFH~r~D~~--elrrlL~~LG~e 195 (562)
T TIGR01278 123 DVNAYRVKELQAADRLLTQLVRRFAKEQPKKGRLD-----TETTEKPSVNLLGPASLGFHHRHDLI--ELRRLLKTLGIE 195 (562)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----CCCCCCCEEEECCCCCCCCCCHHHHH--HHHHHHHHCCEE
T ss_conf 37657899999989999999999847788888666-----67889623761141133423210338--999999658947
Q ss_pred CCEEECCCCCCHHHHHHH
Q ss_conf 410201477531455567
Q gi|254780285|r 161 VTREYYINDAGAQINTLA 178 (586)
Q Consensus 161 V~r~nyvgD~G~Q~~~li 178 (586)
| |-|==||-.|..|.
T Consensus 196 v---N~v~P~GA~i~dL~ 210 (562)
T TIGR01278 196 V---NVVAPWGASIADLA 210 (562)
T ss_pred E---EEECCCCCCHHHHH
T ss_conf 9---89737998858898
No 114
>pfam03464 eRF1_2 eRF1 domain 2. The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits exper
Probab=59.76 E-value=11 Score=16.65 Aligned_cols=61 Identities=21% Similarity=0.243 Sum_probs=37.1
Q ss_pred CCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEECCCEE
Q ss_conf 22452774178801274110489998888289979999999983457897314885479768
Q gi|254780285|r 28 ILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDSVFIAGKGFI 89 (586)
Q Consensus 28 ~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~vevagpGfI 89 (586)
.+.++....|.+...|..|. ..|.--+...+=-..||+.+.+.+...+.++-+-++||||.
T Consensus 24 ~~~~i~~~iP~K~~~ggqS~-~rf~r~~~~~~f~~~v~e~~~~~f~~~~~~k~IIlaGPGf~ 84 (131)
T pfam03464 24 ILGKITVGLPGKHGRGGQSA-RRFAREEKRHEFYRKVAEAANQYFVDKDNVKGIILAGPGFF 84 (131)
T ss_pred EEEEEEEECCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHH
T ss_conf 99999977787767787530-14568999999999999999997335456018999387588
No 115
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=58.95 E-value=9.2 Score=17.27 Aligned_cols=51 Identities=25% Similarity=0.312 Sum_probs=33.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 33677761368999999999722663451153110110122110000012233024
Q gi|254780285|r 353 IYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFI 408 (586)
Q Consensus 353 iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v 408 (586)
+=+=|+||..-.-.-...++.+|+. +..+++.-++. .-||. ||++-.|+.+
T Consensus 183 lq~GG~DQ~~ni~~grdl~rr~g~~--~~~~lt~PLL~-~ldG~--KmgKs~~~a~ 233 (401)
T COG0162 183 LQLGGSDQWGNILAGRDLIRRLGQK--KVVGLTTPLLT-GLDGK--KMGKSEGGAV 233 (401)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHCCC--CEEEEEECCCC-CCCCC--CCCCCCCCCE
T ss_conf 3118767899999999999980899--72899835503-89888--1566677867
No 116
>cd07957 Anticodon_Ia_Met Anticodon-binding domain of methionyl tRNA synthetases. This domain is found in methionyl tRNA synthetases (MetRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon (CAU). MetRS catalyzes the transfer of methionine to the 3'-end of its tRNA.
Probab=58.26 E-value=12 Score=16.48 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88999987533200246832234223552114998999999998421899999998528127999999999988999870
Q gi|254780285|r 459 ARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSH 538 (586)
Q Consensus 459 aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~ 538 (586)
-|+-+...|.-... ++.....++.+.+|+..+....+.+..+.+.++.+.-++.+.+++..-|+|.+.
T Consensus 14 ~Rv~~~~~k~~~~~------------i~~~~~~~~~d~~l~~~~~~~~~~~~~~~e~~~~~~al~~i~~l~~~~N~y~~~ 81 (129)
T cd07957 14 NRTLNMASKYFGGV------------VPEFGGLTEEDEELLEEAEELLEEVAEAMEELEFRKALEEIMELARAANKYIDE 81 (129)
T ss_pred HHHHHHHHHHCCCC------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999827997------------999877764139999999999999999998524999999999999999999996
Q ss_pred CC
Q ss_conf 68
Q gi|254780285|r 539 GR 540 (586)
Q Consensus 539 ~~ 540 (586)
..
T Consensus 82 ~~ 83 (129)
T cd07957 82 TA 83 (129)
T ss_pred CC
T ss_conf 58
No 117
>TIGR02834 spo_ytxC putative sporulation protein YtxC; InterPro: IPR014199 This uncharacterised protein is one of a number of proteins conserved in all known endospore-forming Firmicutes (low-GC Gram-positive bacteria), including Carboxydothermus hydrogenoformans, and it is not found in non-endospore forming species. It is uniformly distributed in the mother cell cytoplasm in Bacillus subtilis ..
Probab=57.14 E-value=12 Score=16.35 Aligned_cols=18 Identities=0% Similarity=-0.208 Sum_probs=9.4
Q ss_pred HHHHHCCHHHHHHHHHHH
Q ss_conf 554200012333447776
Q gi|254780285|r 425 MMLWRKNSELLDFDFCKV 442 (586)
Q Consensus 425 ~~L~~~~~~~~~Fd~d~~ 442 (586)
.+++..|.+...|.-|..
T Consensus 246 pLIs~aP~kI~~y~~~~~ 263 (283)
T TIGR02834 246 PLISLAPEKIKIYTDDPD 263 (283)
T ss_pred HHHHHCCCEEEEECCCCC
T ss_conf 998628865899526899
No 118
>PRK08099 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=53.42 E-value=9.2 Score=17.28 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=20.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
Q ss_conf 555433367776136899999999972266
Q gi|254780285|r 348 GFDNMIYVMGSDHSGYVKRLEAVAAAVSEK 377 (586)
Q Consensus 348 ~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~ 377 (586)
.|-+-|-|+|++-.+-..-+...+...+..
T Consensus 229 ~FvKkVvIlG~ESTGKTTL~~~LA~~ynT~ 258 (411)
T PRK08099 229 FFVRTVAILGGESSGKSTLVNKLANIFNTT 258 (411)
T ss_pred HHCEEEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 543689998999888899999999997899
No 119
>TIGR02685 pter_reduc_Leis pteridine reductase; InterPro: IPR014058 Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family..
Probab=52.69 E-value=8.7 Score=17.44 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHCCCCCCEEECC
Q ss_conf 8999999998506664102014
Q gi|254780285|r 146 VGDTLASLMAFSGYEVTREYYI 167 (586)
Q Consensus 146 IGdsi~ril~~~G~~V~r~nyv 167 (586)
||.||+-=|...||.|+-+||=
T Consensus 13 iG~sIAv~LH~~GyrVv~HYh~ 34 (283)
T TIGR02685 13 IGRSIAVKLHQEGYRVVVHYHR 34 (283)
T ss_pred HHHHHHHHHHHCCCEEEEEECC
T ss_conf 2189999985089889994024
No 120
>KOG2713 consensus
Probab=51.28 E-value=9.2 Score=17.29 Aligned_cols=104 Identities=22% Similarity=0.202 Sum_probs=48.3
Q ss_pred CCCCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCEEEECCH--------HHCCCC
Q ss_conf 46521356---888999999752255543336777613689999999997226634-511531101--------101221
Q gi|254780285|r 327 SDGSYTYF---AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKA-QINVLLCEL--------VRLYRD 394 (586)
Q Consensus 327 sDGt~~Y~---t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~-~~~~~~~~~--------v~l~~d 394 (586)
+=|-++|- +.||-. ||- +. --||.||++|..-...++..++.... .+--+.-.+ +.| .|
T Consensus 137 ~vGLftYPvLqAADILL--Yks----Th--VPVGeDQsQHleL~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL-~d 207 (347)
T KOG2713 137 PVGLFTYPVLQAADILL--YKS----TH--VPVGEDQSQHLELARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSL-RD 207 (347)
T ss_pred CEEEECCHHHHHHHHHH--HCC----CC--CCCCCCHHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHC-CC
T ss_conf 20113124676655765--036----53--46773189999999999999865326733247588876664544212-68
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 1000001223302456777776321123455542000123334477
Q gi|254780285|r 395 GMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFC 440 (586)
Q Consensus 395 g~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d 440 (586)
+. .|||+-.++--.--.|.|.-+.=.-|+---..+..+.++||..
T Consensus 208 pe-kKMSKSd~n~~s~I~l~DS~~~I~~Ki~ka~TD~~~~vtYd~~ 252 (347)
T KOG2713 208 PE-KKMSKSDPNPKSRINLTDSPDLIVKKIKKAQTDNTSGVTYDPA 252 (347)
T ss_pred HH-HHCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCCCEEECCC
T ss_conf 35-5414579997555883388789999999874044566135776
No 121
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=49.28 E-value=16 Score=15.51 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHH-CCCCCCCCCCCCCCCC-HHHHHHHHHHH
Q ss_conf 33677761368999999999722663451153110110-1221100000122330-24567777763
Q gi|254780285|r 353 IYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVR-LYRDGMPIKMSKRAGD-FITLRHVVDEV 417 (586)
Q Consensus 353 iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~-l~~dg~~~kmstR~G~-~v~l~dll~ev 417 (586)
|-.-|.||.--+--....+..+|+.... .+++..|+. |.+++. |||+..++ .|.++|--++|
T Consensus 229 i~~gGmDQRKi~mLARey~~~~~~k~kp-iil~h~mlpGL~~g~~--KMSkSdp~saI~m~Ds~e~V 292 (399)
T PTZ00126 229 ICQLGMDQRKVNMLAREYCDLKKIKKKP-IILSHHMLPGLLEGQE--KMSKSDPNSAIFMEDSAEEV 292 (399)
T ss_pred EEECCHHHHHHHHHHHHHHHHCCCCCCC-EEEECCCCCCCCCCCC--CCCCCCCCCEEEECCCHHHH
T ss_conf 4433601999999999987652887786-7985777765566876--56668987721201899999
No 122
>KOG0437 consensus
Probab=49.10 E-value=17 Score=15.49 Aligned_cols=28 Identities=39% Similarity=0.815 Sum_probs=25.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0012233024567777763211234555
Q gi|254780285|r 399 KMSKRAGDFITLRHVVDEVGSDSVRFMM 426 (586)
Q Consensus 399 kmstR~G~~v~l~dll~evg~~aiky~~ 426 (586)
|||+-.||+.+|++-+++.|.++.|.++
T Consensus 710 KMSKSTGNfmTL~qaieKFgad~tRlal 737 (1080)
T KOG0437 710 KMSKSTGNFMTLEQAIEKFGADGTRLAL 737 (1080)
T ss_pred HCCCCCCCEEEHHHHHHHHCCCCEEEEE
T ss_conf 2054567724599989873875204532
No 123
>cd07961 Anticodon_Ia_Ile_ABEc Anticodon-binding domain of archaeal, bacterial, and eukaryotic cytoplasmic isoleucyl tRNA synthetases. This domain is found in isoleucyl tRNA synthetases (IleRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. This family includes bacterial, archaeal, and eukaryotic cytoplasmic members. IleRS catalyzes the transfer of isoleucine to the 3'-end of its tRNA.
Probab=48.99 E-value=17 Score=15.48 Aligned_cols=83 Identities=7% Similarity=0.132 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999842189999999852812799999999998899987068666665435787899999999999999999
Q gi|254780285|r 491 FDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASII 570 (586)
Q Consensus 491 ~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL 570 (586)
.++.++-++-.+...-..+.++.++++.|..++-+|+....|++||-.-. -+.+. ....+.+ |..-......+|
T Consensus 45 ~~~~D~WIls~l~~~~~~v~~~~~~y~f~~a~~~l~~F~~~l~~wYie~~-K~rl~-~~~~~~~----~~~a~~~L~~vL 118 (183)
T cd07961 45 LNVLDRWILSRLNSLIKEVTEEMEAYDLYTAVRALLEFIDELTNWYIRRN-RKRFW-GEEGDDD----KLAAYATLYEVL 118 (183)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHH-CCCCCHH----HHHHHHHHHHHH
T ss_conf 55889999999999999999999801199999999999999989999998-89997-0566388----899999999999
Q ss_pred HHHHHHCCC
Q ss_conf 998731587
Q gi|254780285|r 571 NSGLNIIGV 579 (586)
Q Consensus 571 ~~~L~LLGI 579 (586)
...|.||.-
T Consensus 119 ~~~l~ll~P 127 (183)
T cd07961 119 LTLSRLMAP 127 (183)
T ss_pred HHHHHHCCC
T ss_conf 999997576
No 124
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=46.87 E-value=18 Score=15.26 Aligned_cols=17 Identities=12% Similarity=0.057 Sum_probs=9.7
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 87899999999999999
Q gi|254780285|r 551 NNRKLTMMRLQLVHAVA 567 (586)
Q Consensus 551 ~~~~~~~~RL~L~~a~~ 567 (586)
....+++.|-+|-.+..
T Consensus 204 ~~~~~~~~~~~~~~~~~ 220 (231)
T PRK13849 204 MRLLERNLRIAMEELVT 220 (231)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 47899999999999999
No 125
>pfam09139 Mmp37 Mitochondrial matrix Mmp37. MMp37 is a mitochondrial matrix protein that functions in the translocation of proteins across the mitochondrial inner membrane.
Probab=45.75 E-value=19 Score=15.14 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=7.4
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 99999998506664
Q gi|254780285|r 148 DTLASLMAFSGYEV 161 (586)
Q Consensus 148 dsi~ril~~~G~~V 161 (586)
..|+++-+..|..|
T Consensus 76 ~~is~vQ~~~GagV 89 (324)
T pfam09139 76 KAISKVQENFGAGV 89 (324)
T ss_pred HHHHHHHHHHCCCE
T ss_conf 89999999738976
No 126
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase; InterPro: IPR006418 This family of archaeal proteins exhibits NAD salvage biosynthesis enzyme nicotinamide-nucleotide adenylyltransferase (2.7.7.1 from EC) activity. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase (2.7.7.18 from EC), an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterised with respect to activity, are also present.; GO: 0000309 nicotinamide-nucleotide adenylyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm.
Probab=45.52 E-value=6.8 Score=18.21 Aligned_cols=14 Identities=29% Similarity=0.871 Sum_probs=8.2
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q ss_conf 41177777856899999999
Q gi|254780285|r 135 PMHVGHCRCAVVGDTLASLM 154 (586)
Q Consensus 135 plHVGHlRsaiIGdsi~ril 154 (586)
|+|.||++ .|.+++
T Consensus 10 PFH~GH~~------Vik~~l 23 (171)
T TIGR01527 10 PFHLGHLE------VIKKIL 23 (171)
T ss_pred CCCCCHHH------HHHHHH
T ss_conf 75521379------999887
No 127
>pfam09456 RcsC RcsC Alpha-Beta-Loop (ABL). This domain is found in the C-terminus of the phospho-relay kinase RcsC between pfam00512 and pfam00072, and forms a discrete alpha/beta/loop structure.
Probab=44.91 E-value=19 Score=15.06 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 77785689999999985066641020
Q gi|254780285|r 140 HCRCAVVGDTLASLMAFSGYEVTREY 165 (586)
Q Consensus 140 HlRsaiIGdsi~ril~~~G~~V~r~n 165 (586)
.+||+.+...+-|+|...|..|.|-.
T Consensus 5 ~iRNa~Le~yL~~lL~~~G~~v~ry~ 30 (92)
T pfam09456 5 AIRNASLESFLERLLSYHGLTVQRYE 30 (92)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 77788999999999997794799805
No 128
>pfam03068 PAD Protein-arginine deiminase (PAD). Members of this family are found in mammals. In the presence of calcium ions, PAD enzymes EC:3.5.3.15 catalyse the post-translational modification reaction responsible for the formation of citrulline residues: Protein L-arginine + H2O <= Protein L-citrulline + NH3. Several types are recognized (and included in the family) on the basis of molecular mass, substrate specificity, and tissue localisation. The expression of type I PAD is known to be under the control of oestrogen.
Probab=44.35 E-value=14 Score=15.96 Aligned_cols=10 Identities=0% Similarity=0.305 Sum_probs=3.9
Q ss_pred HHHHHHHHHC
Q ss_conf 9999999722
Q gi|254780285|r 366 RLEAVAAAVS 375 (586)
Q Consensus 366 ~v~~~~~~lg 375 (586)
.|...++.+|
T Consensus 337 ~v~~ll~~lG 346 (385)
T pfam03068 337 KVRSLLEPLG 346 (385)
T ss_pred HHHHHHHCCC
T ss_conf 9999750268
No 129
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=44.29 E-value=19 Score=14.99 Aligned_cols=14 Identities=21% Similarity=0.036 Sum_probs=7.5
Q ss_pred ECCCEEEEEECHHH
Q ss_conf 47976878888889
Q gi|254780285|r 84 AGKGFINLYLSPSY 97 (586)
Q Consensus 84 agpGfIN~~l~~~~ 97 (586)
.|.--.++|..++-
T Consensus 41 ~gk~~~~lF~epST 54 (357)
T TIGR03316 41 ESGLGISLFRDNST 54 (357)
T ss_pred CCCEEEEEECCCCC
T ss_conf 89889999738984
No 130
>COG2238 RPS19A Ribosomal protein S19E (S16A) [Translation, ribosomal structure and biogenesis]
Probab=41.62 E-value=15 Score=15.87 Aligned_cols=26 Identities=31% Similarity=0.645 Sum_probs=15.4
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 88730104579999999997498511
Q gi|254780285|r 263 DDFHRGDPSPIRDIIDNLARQGYVYE 288 (586)
Q Consensus 263 s~~~~~~~~~i~~~i~~l~~~g~~~e 288 (586)
+-+..+....+..++++|++-|++.+
T Consensus 88 ~~~~~gsgsI~RkilqqLE~~G~V~k 113 (147)
T COG2238 88 EKFRKGSGSIIRKVLQQLEKAGLVEK 113 (147)
T ss_pred HHHHCCCCHHHHHHHHHHHHCCCEEE
T ss_conf 34423773699999999997785652
No 131
>KOG2145 consensus
Probab=40.81 E-value=22 Score=14.63 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=48.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33677761368999999999722663451153110110122110000012233-024567777763211234555
Q gi|254780285|r 353 IYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAG-DFITLRHVVDEVGSDSVRFMM 426 (586)
Q Consensus 353 iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G-~~v~l~dll~evg~~aiky~~ 426 (586)
+---+-||..+|+....++..+|++++.+.|..+--- | .|..-|||--.. ..|.+.|..+++-.--.+|+.
T Consensus 235 LiPcAiDQDPyFRmtRDvA~rlg~~Kpali~stffpa-L--qG~~~KMSASdpns~Ifltdt~~qIk~KI~~~af 306 (397)
T KOG2145 235 LIPCAIDQDPYFRMTRDVAPRLGYPKPALIHSTFFPA-L--QGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAF 306 (397)
T ss_pred ECEEECCCCHHHHHHHHHHHHHCCCCCCEEEHHHCHH-H--HCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHC
T ss_conf 2211016772777655344541899842100110212-1--0754455567997437862758999999988631
No 132
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=40.78 E-value=11 Score=16.82 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHH----HHHCCCCCCCEEEE-----CCHHHCCCCCCCCCCCCCCCC-HH---HHHHHHHHHHHHHHHHH
Q ss_conf 6136899999999----97226634511531-----101101221100000122330-24---56777776321123455
Q gi|254780285|r 359 DHSGYVKRLEAVA----AAVSEKKAQINVLL-----CELVRLYRDGMPIKMSKRAGD-FI---TLRHVVDEVGSDSVRFM 425 (586)
Q Consensus 359 ~Q~~h~~~v~~~~----~~lg~~~~~~~~~~-----~~~v~l~~dg~~~kmstR~G~-~v---~l~dll~evg~~aiky~ 425 (586)
-|.+|..|+|..+ ..||-...-++-+. .|+|++..+ .+|++... .| ++-.++.+.|..++||+
T Consensus 80 ~~P~HVNQvFt~ag~sr~~L~~~~T~vN~LvsPTG~~G~VkIsTG----p~Ss~~~~~~V~vetAiaml~dmG~~SiKff 155 (236)
T TIGR03581 80 TQPQHINQVFTGVGTSRALLGQADTVINGLVSPTGTPGLVNISTG----PLSSQGKEAIVPIETAIAMLKDMGGSSVKFF 155 (236)
T ss_pred CCCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCC----CCCCCCCCCEEEHHHHHHHHHHCCCCEEEEE
T ss_conf 497654641540477788737987089887758897516994567----6655688855139999999997398826675
Q ss_pred HH
Q ss_conf 54
Q gi|254780285|r 426 ML 427 (586)
Q Consensus 426 ~L 427 (586)
-.
T Consensus 156 Pm 157 (236)
T TIGR03581 156 PM 157 (236)
T ss_pred EC
T ss_conf 06
No 133
>KOG2555 consensus
Probab=40.71 E-value=18 Score=15.18 Aligned_cols=12 Identities=17% Similarity=0.335 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q ss_conf 218999999985
Q gi|254780285|r 504 EYPRVIENATIA 515 (586)
Q Consensus 504 ~f~~vi~~a~~~ 515 (586)
-||+-|..|.+.
T Consensus 539 PF~Dnv~ra~qs 550 (588)
T KOG2555 539 PFPDNVYRAVQS 550 (588)
T ss_pred CCCHHHHHHHHC
T ss_conf 671579999863
No 134
>pfam10137 TIR-like Predicted nucleotide-binding protein containing TIR-like domain. Members of this family of bacterial nucleotide-binding proteins contain a TIR-like domain. Their exact function has not, as yet, been defined.
Probab=40.25 E-value=22 Score=14.58 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHH
Q ss_conf 7777785689999999985066641020147753145
Q gi|254780285|r 138 VGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQI 174 (586)
Q Consensus 138 VGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~ 174 (586)
|+|.|+...=+.++++++..|.+++-.+-..+-|.-+
T Consensus 4 IvHG~d~~~~~~~~~~l~klglepiil~e~~~~G~Ti 40 (124)
T pfam10137 4 IVHGHDEAAKDEVARFLEKLGLEPIILHEQANGGRTI 40 (124)
T ss_pred EEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH
T ss_conf 9937998999999999997699779963047689847
No 135
>TIGR01777 yfcH conserved hypothetical protein TIGR01777; InterPro: IPR010099 This entry represents proteins of unknown function including the Escherichia coli YfcH protein..
Probab=39.92 E-value=21 Score=14.79 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHCCCCCCEEE
Q ss_conf 689999999985066641020
Q gi|254780285|r 145 VVGDTLASLMAFSGYEVTREY 165 (586)
Q Consensus 145 iIGdsi~ril~~~G~~V~r~n 165 (586)
+||.+|++-|+..||+|++.-
T Consensus 10 fiG~~L~~~L~~~g~~V~~l~ 30 (307)
T TIGR01777 10 FIGRALTQRLTKSGHEVTILT 30 (307)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
T ss_conf 378999999984799899996
No 136
>PRK09333 30S ribosomal protein S19e; Provisional
Probab=39.72 E-value=16 Score=15.60 Aligned_cols=17 Identities=35% Similarity=0.472 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 45799999999974985
Q gi|254780285|r 270 PSPIRDIIDNLARQGYV 286 (586)
Q Consensus 270 ~~~i~~~i~~l~~~g~~ 286 (586)
...+..++++|++-|++
T Consensus 95 g~iiR~~LQqLE~~glv 111 (150)
T PRK09333 95 GSIIRKALQQLEAAGLV 111 (150)
T ss_pred HHHHHHHHHHHHHCCCE
T ss_conf 58999999999878885
No 137
>pfam01090 Ribosomal_S19e Ribosomal protein S19e.
Probab=39.56 E-value=16 Score=15.55 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHCCCC
Q ss_conf 45799999999974985
Q gi|254780285|r 270 PSPIRDIIDNLARQGYV 286 (586)
Q Consensus 270 ~~~i~~~i~~l~~~g~~ 286 (586)
...+..++++|++-|++
T Consensus 94 g~iiR~~lQqLE~~glv 110 (140)
T pfam01090 94 GSIIRKALQQLEKAGLV 110 (140)
T ss_pred CHHHHHHHHHHHHCCCE
T ss_conf 27999999999878887
No 138
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.46 E-value=23 Score=14.49 Aligned_cols=72 Identities=17% Similarity=0.238 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHC------CCHHHHHHHHHHHCC
Q ss_conf 9868999999999999998604888212245277417880127411048999888828------997999999998345
Q gi|254780285|r 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLG------LDPLTIAELIVARIK 73 (586)
Q Consensus 1 M~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~k------k~P~~iA~~i~~~l~ 73 (586)
|..-.+++.+|.++++.+.--+..+.+..+-.---+..-.+-||... -|+.++|.+- |+|.++|..|+++..
T Consensus 2 m~v~~e~~~qiv~~~k~a~fPInn~~eL~~ALP~G~dttc~~G~~e~-tA~E~~kLlT~~DFPfk~a~~vad~iv~~~~ 79 (80)
T COG4746 2 MTVREEIREQIVEALKGADFPINNPEELVAALPSGPDTTCESGGVEV-TAAEAGKLLTDADFPFKSAEQVADTIVNKAG 79 (80)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCEEE-EHHHHHHHCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 31799999999999724787779989999766689987756787523-1788775600457887899999999997448
No 139
>pfam07071 DUF1341 Protein of unknown function (DUF1341). This family consists of several hypothetical bacterial proteins of around 220 residues in length. The function of this family is unknown.
Probab=39.11 E-value=12 Score=16.36 Aligned_cols=65 Identities=17% Similarity=0.305 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHH----HHHCCCCCCCEEEE-----CCHHHCCCCCCCCCCCCCCCC-HH---HHHHHHHHHHHHHHHHH
Q ss_conf 6136899999999----97226634511531-----101101221100000122330-24---56777776321123455
Q gi|254780285|r 359 DHSGYVKRLEAVA----AAVSEKKAQINVLL-----CELVRLYRDGMPIKMSKRAGD-FI---TLRHVVDEVGSDSVRFM 425 (586)
Q Consensus 359 ~Q~~h~~~v~~~~----~~lg~~~~~~~~~~-----~~~v~l~~dg~~~kmstR~G~-~v---~l~dll~evg~~aiky~ 425 (586)
-|.+|..|+|..+ ..||....-++-+. .|+|++..+ .+|++.-. .| ++-.++.+.|..++||+
T Consensus 80 ~~P~HVNQvFt~ag~sr~~Lg~~~T~vN~LvsPTG~~G~VkIsTG----p~Ss~~~~~iV~vetAiaml~dmG~~SiKff 155 (218)
T pfam07071 80 VQPQHINQVFTGVGTSRALLGQNDTVVNGLVSPTGKVGEVKISTG----PLSSQKEDAIVPVETAIAMLKDMGGSSVKFF 155 (218)
T ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCCCCEEEECCC----CCCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 497654641542277788707986178766657886535883567----7544577751309999999997298805664
Q ss_pred HH
Q ss_conf 54
Q gi|254780285|r 426 ML 427 (586)
Q Consensus 426 ~L 427 (586)
-.
T Consensus 156 Pm 157 (218)
T pfam07071 156 PM 157 (218)
T ss_pred CC
T ss_conf 26
No 140
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit; InterPro: IPR014215 This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by IPR014214 from INTERPRO. This protein is also known as SpoVFA..
Probab=38.48 E-value=21 Score=14.83 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHCCCCCC
Q ss_conf 89999999985066641
Q gi|254780285|r 146 VGDTLASLMAFSGYEVT 162 (586)
Q Consensus 146 IGdsi~ril~~~G~~V~ 162 (586)
+|.||||.|+.+|.+|.
T Consensus 163 tG~tiAr~f~aLGA~V~ 179 (288)
T TIGR02853 163 TGMTIARTFSALGARVS 179 (288)
T ss_pred HHHHHHHHHHHCCCEEE
T ss_conf 56899999972698057
No 141
>TIGR01307 pgm_bpd_ind 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; InterPro: IPR005995 This 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (iPGAM) is a metalloenzyme found particularly in eubacteria and higher plants. It is distantly related to archaeal iPGAM (IPR004456 from INTERPRO) and distinct from the unrelated cofactor-dependent PGAM (PIRSF001490 from PIRSF). Activity has been demonstrated for proteins from a variety of organisms, including Pseudomonas syringae pv. tomato , Bacillus subtilis , Bacillus stearothermophilus , maize , castor bean , and Trypanosoma brucei . The structure of the B. stearothermophilus enzyme (PDB:1EJJ) has two domains . Residues 1-76 and 311-511 form the phosphatase domain, containing the active site residue and two metal-binding sites. This domain is similar to alkaline phosphatase (PDB:1ALK) and arylsulphatase (PDB:1AUK), which are members of the SCOP alkaline phosphatase-like superfamily, but there is meagre sequence similarity outside of the metal-binding segments. Residues 77-310 form the phosphotransferase domain, which is poorly conserved (or perhaps unrelated) in the archaeal enzymes.; GO: 0004619 phosphoglycerate mutase activity, 0006007 glucose catabolic process.
Probab=38.07 E-value=17 Score=15.48 Aligned_cols=15 Identities=33% Similarity=0.270 Sum_probs=10.7
Q ss_pred CCCCCCCCCCCHHHH
Q ss_conf 222210246521356
Q gi|254780285|r 320 VDRPLLKSDGSYTYF 334 (586)
Q Consensus 320 ~d~vl~rsDGt~~Y~ 334 (586)
.+|+|+-|---+||-
T Consensus 364 E~R~lI~SPkVaTYD 378 (529)
T TIGR01307 364 ETRTLIPSPKVATYD 378 (529)
T ss_pred CCEEECCCCCCCCCC
T ss_conf 825543855888876
No 142
>PRK05434 phosphoglyceromutase; Provisional
Probab=37.57 E-value=17 Score=15.39 Aligned_cols=18 Identities=39% Similarity=0.741 Sum_probs=14.4
Q ss_pred HHHHHHHHCCCCCCCCCC
Q ss_conf 999987315879854459
Q gi|254780285|r 569 IINSGLNIIGVESPNEMS 586 (586)
Q Consensus 569 vL~~~L~LLGI~~perM~ 586 (586)
|=-+.|.||||++|+.|.
T Consensus 486 vAPTiL~llg~~~P~eMt 503 (511)
T PRK05434 486 IAPTILDLLGLEQPAEMT 503 (511)
T ss_pred HHHHHHHHCCCCCCCCCC
T ss_conf 889999980899970238
No 143
>PTZ00095 40S ribosomal protein S19; Provisional
Probab=36.27 E-value=20 Score=14.97 Aligned_cols=16 Identities=31% Similarity=0.406 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 5799999999974985
Q gi|254780285|r 271 SPIRDIIDNLARQGYV 286 (586)
Q Consensus 271 ~~i~~~i~~l~~~g~~ 286 (586)
+.+..+++.|++-|++
T Consensus 120 ~IiR~~LQqLE~~glV 135 (169)
T PTZ00095 120 KILRWICQQLEKLGLV 135 (169)
T ss_pred HHHHHHHHHHHHCCCE
T ss_conf 8999999999878887
No 144
>cd02172 RfaE_N RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in other organisms. Domain I is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (this family) adds ADP to yield ADP-D-glycero-D-manno-heptose .
Probab=34.86 E-value=16 Score=15.64 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=14.0
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHH
Q ss_conf 5541000223443224411777778
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRC 143 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRs 143 (586)
+|+||+.=+..=+ +||.||+|-
T Consensus 2 ~gkkiv~~~G~FD---l~H~GHi~~ 23 (143)
T cd02172 2 EGKKVVLTHGCFD---LLHAGHVRH 23 (143)
T ss_pred CCCEEEEECCEEC---CCCHHHHHH
T ss_conf 8898999927337---789999999
No 145
>PRK01581 speE spermidine synthase; Validated
Probab=33.39 E-value=22 Score=14.64 Aligned_cols=12 Identities=17% Similarity=0.205 Sum_probs=4.0
Q ss_pred HHHHHHHHHHHH
Q ss_conf 888899998753
Q gi|254780285|r 457 AYARCRSIFRQA 468 (586)
Q Consensus 457 a~aR~~SIlrKa 468 (586)
||=++.+-++-|
T Consensus 266 aFWsI~~Tl~aA 277 (363)
T PRK01581 266 VYWSIGNTIEHA 277 (363)
T ss_pred CEEEHHHHHHHC
T ss_conf 336777779873
No 146
>TIGR01016 sucCoAbeta succinyl-CoA synthetase, beta subunit; InterPro: IPR005809 There are four different enzymes that share a similar catalytic mechanism which involves the phosphorylation by ATP (or GTP) of a specific histidine residue in the active site. These enzymes are: ATP citrate-lyase (4.1.3.8 from EC) , the primary enzyme responsible for the synthesis of cytosolic acetyl-CoA in many tissues, catalyzes the formation of acetyl-CoA and oxaloacetate from citrate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. ATP-citrate lyase is a tetramer of identical subunits; Succinyl-CoA ligase (GDP-forming) (6.2.1.4 from EC) is a mitochondrial enzyme that catalyzes the substrate level phosphorylation step of the tricarboxylic acid cycle: the formation of succinyl-CoA from succinate with a concomitant hydrolysis of GTP to GDP and phosphate. This enzyme is a dimer composed of an alpha and a beta subunits; Succinyl-CoA ligase (ADP-forming) (6.2.1.5 from EC) is a bacterial enzyme that during aerobic metabolism functions in the citric acid cycle, coupling the hydrolysis of succinyl-CoA to the synthesis of ATP. It can also function in the other direction for anabolic purposes. This enzyme is a tetramer composed of two alpha and two beta subunits; and Malate-CoA ligase (6.2.1.9 from EC) (malyl-CoA synthetase) , is a bacterial enzyme that forms malyl-CoA from malate and CoA with the concomitant hydrolysis of ATP to ADP and phosphate. Malate-CoA ligase is composed of two different subunits. This entry corresponds to a conserved region located in the first half of ATP citrate lyase and in the beta subunits of succinyl-CoA ligases and malate-CoA ligase. ; GO: 0003824 catalytic activity, 0008152 metabolic process.
Probab=32.72 E-value=29 Score=13.77 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCCCCEEEEEEE-----CCCEEEEEECHHHHHHHHHHHHHCCHH-CCCCCCCCC-CCEECCCCCCCCC
Q ss_conf 799999999834578973148854-----797687888888999999999856221-388765655-4100022344322
Q gi|254780285|r 61 PLTIAELIVARIKIDPDVDSVFIA-----GKGFINLYLSPSYLRKILSSIVVSGIE-YGRNLIGKG-TKVNIEFVSANPT 133 (586)
Q Consensus 61 P~~iA~~i~~~l~~~~~i~~veva-----gpGfIN~~l~~~~~~~~l~~i~~~~~~-yG~~~~~~~-~kVvVE~sSpNp~ 133 (586)
|.+ ++.+++.+...+.+-|+-|. +.|=|-|-=|++-+.+...+++.+... |-....+++ .||+||-
T Consensus 28 ~~e-~~~~~~~~g~~~~VvKaQVhaGGRGKAGGv~~a~s~ee~~~~a~~llg~~l~t~Qt~~~g~~VnkiliE~------ 100 (389)
T TIGR01016 28 VEE-VEEIAEELGEGKVVVKAQVHAGGRGKAGGVKVAKSKEEALKAAEKLLGKELKTFQTDPLGQPVNKILIEE------ 100 (389)
T ss_pred HHH-HHHHHHHCCCCCEEEEEEEEECCCCCCCCEEEEECHHHHHHHHHHHHCCEEEEEECCCCCCEEEEEEECC------
T ss_conf 789-9999997079978999877326711215768970879999999987089157864078886344787326------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 44117777785689999999985066641020147
Q gi|254780285|r 134 GPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYIN 168 (586)
Q Consensus 134 KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvg 168 (586)
.-++.|++|++
T Consensus 101 ------------------------~~~I~kEyY~s 111 (389)
T TIGR01016 101 ------------------------KIDIDKEYYLS 111 (389)
T ss_pred ------------------------CCCCCCEEEEE
T ss_conf ------------------------77412001477
No 147
>PHA01630 putative group 1 glycosyl transferase
Probab=32.53 E-value=19 Score=15.05 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=10.3
Q ss_pred HHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf 588730104579999999997498
Q gi|254780285|r 262 EDDFHRGDPSPIRDIIDNLARQGY 285 (586)
Q Consensus 262 Es~~~~~~~~~i~~~i~~l~~~g~ 285 (586)
-|.+ |.+.+.+..+..+|...|.
T Consensus 152 HS~~-RKG~Di~~~v~~elqke~~ 174 (333)
T PHA01630 152 HSWD-RKGGDIVVKIFHELQNEGY 174 (333)
T ss_pred CCCC-CCCCHHHHHHHHHHHHCCC
T ss_conf 6545-4656889999999984578
No 148
>cd03413 CbiK_C Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), C-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases, and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=32.43 E-value=29 Score=13.79 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=21.6
Q ss_pred HHHHHHHH---HHHHHHHHHCCCCCCEE
Q ss_conf 77785689---99999998506664102
Q gi|254780285|r 140 HCRCAVVG---DTLASLMAFSGYEVTRE 164 (586)
Q Consensus 140 HlRsaiIG---dsi~ril~~~G~~V~r~ 164 (586)
|.+|-+-| ||-.++|+..|++|.-.
T Consensus 71 Ha~nDmaGde~dSWks~L~~~G~~v~~~ 98 (103)
T cd03413 71 HAHNDMAGDEPDSWKSILEAAGIKVETV 98 (103)
T ss_pred HHHHHHCCCCCHHHHHHHHHCCCEEEEE
T ss_conf 5776304898226999999779875799
No 149
>KOG0356 consensus
Probab=32.01 E-value=29 Score=13.75 Aligned_cols=46 Identities=24% Similarity=0.260 Sum_probs=33.6
Q ss_pred CCCCCCCCCCEECC--CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCE
Q ss_conf 88765655410002--2344322441177777856899999999850666410
Q gi|254780285|r 113 GRNLIGKGTKVNIE--FVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTR 163 (586)
Q Consensus 113 G~~~~~~~~kVvVE--~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r 163 (586)
+...-+++.+|++| ++||-++|. ||--.||..+.|-+-|+ |.+-++
T Consensus 41 ~~TlgpKgrnViieq~~gsPkvtkd-gvTva~si~l~d~~~n~----gaklvq 88 (550)
T KOG0356 41 AVTLGPKGRNVIIEQSWGSPKVTKD-GVTVAKSIELKDKYENI----GAKLVQ 88 (550)
T ss_pred HHHCCCCCCEEECCCCCCCCCEECC-CCEEECCCCCCCHHHHH----CCHHHH
T ss_conf 5502688624872034689836148-72553000212255541----528999
No 150
>pfam04471 Mrr_cat Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.
Probab=31.85 E-value=21 Score=14.81 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=19.9
Q ss_pred HHHHHHHCCC-CCCEEECCCCCCHHH
Q ss_conf 9999985066-641020147753145
Q gi|254780285|r 150 LASLMAFSGY-EVTREYYINDAGAQI 174 (586)
Q Consensus 150 i~ril~~~G~-~V~r~nyvgD~G~Q~ 174 (586)
++++|+..|| +|...-.-||.|.-+
T Consensus 1 v~~ll~~~G~~~v~~t~~~~D~GiDv 26 (98)
T pfam04471 1 VAELLEALGYREVELTGKSGDGGIDV 26 (98)
T ss_pred CHHHHHHCCCCEEEECCCCCCCCEEE
T ss_conf 96889767998899788989884589
No 151
>pfam08373 RAP RAP domain. This domain is found in various eukaryotic species, particularly in apicomplexans such as Plasmodium falciparum, where it is found in proteins that are important in various parasite-host cell interactions. It is thought to be an RNA-binding domain.
Probab=30.37 E-value=23 Score=14.50 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=15.4
Q ss_pred HHHH--HHHHHHCCCCCCEEECC
Q ss_conf 9999--99998506664102014
Q gi|254780285|r 147 GDTL--ASLMAFSGYEVTREYYI 167 (586)
Q Consensus 147 Gdsi--~ril~~~G~~V~r~nyv 167 (586)
|.+. -|+|+.+||+|+...|-
T Consensus 18 g~t~lK~r~L~~~G~~vi~Ipy~ 40 (57)
T pfam08373 18 GKTKLKHRILSALGYKVIHIPYY 40 (57)
T ss_pred HHHHHHHHHHHHCCCEEEEECHH
T ss_conf 48999999999879979997699
No 152
>KOG2869 consensus
Probab=29.65 E-value=33 Score=13.43 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=7.7
Q ss_pred EEEECCCEEEEEEC
Q ss_conf 88547976878888
Q gi|254780285|r 81 VFIAGKGFINLYLS 94 (586)
Q Consensus 81 vevagpGfIN~~l~ 94 (586)
++--|+|.|-.-.-
T Consensus 8 ~~rng~G~vtmvpE 21 (379)
T KOG2869 8 IERNGSGSVTMVPE 21 (379)
T ss_pred HHCCCCCEEEECCC
T ss_conf 00279741898757
No 153
>TIGR03291 methan_mark_17 putative methanogenesis marker protein 17. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=28.92 E-value=33 Score=13.34 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=59.6
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEC-CCEEEEEECH-HHHHHHHHHHHHCCHHCCCCCCCCCCCEECCC
Q ss_conf 999888828997999999998345789731488547-9768788888-89999999998562213887656554100022
Q gi|254780285|r 50 AMILSRPLGLDPLTIAELIVARIKIDPDVDSVFIAG-KGFINLYLSP-SYLRKILSSIVVSGIEYGRNLIGKGTKVNIEF 127 (586)
Q Consensus 50 a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~vevag-pGfIN~~l~~-~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~ 127 (586)
.|.++-.+|+.++. +...+ +..++..+ .|=+-+.+.+ +|+.+.|..+ .+.||+..+.++.+--|.-
T Consensus 43 ~Fi~~~l~r~~~~~--------I~l~D-vA~v~~~~~~~~~~i~I~dEtYlp~lL~~L---w~kyGr~~V~QPdR~~i~i 110 (185)
T TIGR03291 43 LFIAAVITRKVSRP--------ITLRD-MAEVEEDDKEGGLKLSIADETYLPDLLRKL---WSSYGKDRVSQPDRFEITI 110 (185)
T ss_pred EEEEEEEECCCCCC--------EEEEE-EEEEEEECCCCEEEEEECCCCHHHHHHHHH---HHHHCCCCCCCCCCEEEEE
T ss_conf 79999972578873--------68362-030576056670799970421279999999---9984844557888459995
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHH----HHH------CCCCCCEEECCCC
Q ss_conf 34432244117777785689999999----985------0666410201477
Q gi|254780285|r 128 VSANPTGPMHVGHCRCAVVGDTLASL----MAF------SGYEVTREYYIND 169 (586)
Q Consensus 128 sSpNp~KplHVGHlRsaiIGdsi~ri----l~~------~G~~V~r~nyvgD 169 (586)
.|+.+. ++-++...++-|.=.++ +-| =|++|.|.+|.|+
T Consensus 111 ~~~~~~---~~~~l~dmvV~DP~~~l~~~v~da~~RI~PEGfRVrr~~~~~~ 159 (185)
T TIGR03291 111 ETPIDE---ASEGIEDLEVADPRKDLKKKVYDFMFRVFPEGFRVKRNAYEDN 159 (185)
T ss_pred CCCCCC---CCCCHHCEEEECCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 588652---1022110278783788999999999875877408872014697
No 154
>PRK09739 hypothetical protein; Provisional
Probab=28.86 E-value=34 Score=13.34 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=32.4
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 55410002234432244117777785689999999985066641020
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREY 165 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~n 165 (586)
.+|||+|=+..|+|.. -|..+-++++.=++.+||+|....
T Consensus 2 ~~kkiLIV~aHP~~~S-------~~~ala~~~~~~l~~~GheV~v~D 41 (201)
T PRK09739 2 QSERIYLVWAHPRHDS-------LTAKVADAIHQRAQERGIQVTELD 41 (201)
T ss_pred CCCEEEEEECCCCCCC-------HHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9777999973899865-------689999999999998799599997
No 155
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=28.73 E-value=34 Score=13.32 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHCCCCCC
Q ss_conf 89999999985066641
Q gi|254780285|r 146 VGDTLASLMAFSGYEVT 162 (586)
Q Consensus 146 IGdsi~ril~~~G~~V~ 162 (586)
|=+-|+=-|+..||+|+
T Consensus 14 irEl~~~~L~~~gy~v~ 30 (226)
T TIGR02154 14 IRELIAYNLEKAGYDVV 30 (226)
T ss_pred HHHHHHHHHCCCCCEEE
T ss_conf 99999998416894699
No 156
>KOG3471 consensus
Probab=28.65 E-value=34 Score=13.31 Aligned_cols=94 Identities=20% Similarity=0.387 Sum_probs=54.8
Q ss_pred EECCCEEEEEECHHHHHHHHHHHHHCC--HHCCCCCCCCCCCE-ECCCCC---CC-CCCCCC--HHHHHHHHHHHHHHHH
Q ss_conf 547976878888889999999998562--21388765655410-002234---43-224411--7777785689999999
Q gi|254780285|r 83 IAGKGFINLYLSPSYLRKILSSIVVSG--IEYGRNLIGKGTKV-NIEFVS---AN-PTGPMH--VGHCRCAVVGDTLASL 153 (586)
Q Consensus 83 vagpGfIN~~l~~~~~~~~l~~i~~~~--~~yG~~~~~~~~kV-vVE~sS---pN-p~KplH--VGHlRsaiIGdsi~ri 153 (586)
..-|| -+|.|++.|-.+.......-+ ..||.+..+.++.. -||+-- .+ =---|| ||---..+++..++|+
T Consensus 97 ~~~~g-~~i~Lnp~fr~s~~~al~gg~~~~s~~s~~l~~~~~~r~v~~ld~ya~~rwe~ILh~mvgt~~a~~~se~v~~l 175 (465)
T KOG3471 97 QGTPG-QAINLNPTFRRSLRDALTGGGKQNSFGSLVLGEDKHNRDVDFLDKYASERWECILHFMVGTPEAKAVSEGVLNL 175 (465)
T ss_pred CCCCC-CEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 27877-23886788999999998557776667775428775766631567888888999998871786313557429999
Q ss_pred HHHCCCCCC--EEECCCCCCHHHHHH
Q ss_conf 985066641--020147753145556
Q gi|254780285|r 154 MAFSGYEVT--REYYINDAGAQINTL 177 (586)
Q Consensus 154 l~~~G~~V~--r~nyvgD~G~Q~~~l 177 (586)
|+++|---. ++--|-..|.||-++
T Consensus 176 l~~a~lm~~~~~~~~IT~~GFQFLL~ 201 (465)
T KOG3471 176 LKHAGLMSRDENQIEITNAGFQFLLL 201 (465)
T ss_pred HHHCCCCCCCCCCCEEEECCHHHHHC
T ss_conf 98547557898876475000245423
No 157
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=28.41 E-value=34 Score=13.29 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 244117777785689999999985066641
Q gi|254780285|r 133 TGPMHVGHCRCAVVGDTLASLMAFSGYEVT 162 (586)
Q Consensus 133 ~KplHVGHlRsaiIGdsi~ril~~~G~~V~ 162 (586)
+|+--=||=|.+ ..+++.|+-+|++|+
T Consensus 5 ak~g~DgHd~G~---~iva~~l~d~GfeVi 31 (122)
T cd02071 5 AKPGLDGHDRGA---KVIARALRDAGFEVI 31 (122)
T ss_pred EEECCCHHHHHH---HHHHHHHHHCCCEEE
T ss_conf 964786228779---999999997897699
No 158
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.86 E-value=34 Score=13.31 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHH
Q ss_conf 77785689999999985066641020147753145556
Q gi|254780285|r 140 HCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTL 177 (586)
Q Consensus 140 HlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~l 177 (586)
|..+|.- .-++.||+.+|.++. -+|.-|+.+...
T Consensus 131 nGKTTTt-sli~~iL~~~g~~~~---~~GNIG~p~l~~ 164 (481)
T PRK01438 131 NGKTTTV-QMLASILRAAGLRAA---AVGNIGVPVLDA 164 (481)
T ss_pred CCCHHHH-HHHHHHHHHCCCCEE---EEEECCHHHHHH
T ss_conf 9746099-999999996699707---996256777764
No 159
>PRK05667 dnaG DNA primase; Validated
Probab=27.14 E-value=36 Score=13.14 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9989999999984218999999985281----27999999999988999870
Q gi|254780285|r 491 FDTSELQLIVHLAEYPRVIENATIAQEP----YKLAFYLYDLASVFHGHWSH 538 (586)
Q Consensus 491 ~~~~E~~L~~~l~~f~~vi~~a~~~~~P----~~l~~Yl~~La~~Fn~fY~~ 538 (586)
....|+.|+..|+..|+++........+ +..++.++ ..+..+|+.
T Consensus 455 ~~~aE~~lL~~ll~~p~l~~~~~~~~~~~~~~~~~~~~l~---~~i~~~~~~ 503 (600)
T PRK05667 455 KERAERELLALLLQHPELAEEVRELDALEDFKLPGLRLLY---ELIDAAGEQ 503 (600)
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHCCCHHHCCCHHHHHHH---HHHHHHHHC
T ss_conf 7899999999998298999987501342313887899999---999998747
No 160
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit; InterPro: IPR005741 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils . This entry represents subunit A (parC) of topoisomerase IV from Gram positive bacteria. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication . Topoisomerase IV consists of two polypeptide subunits, parC (subunit A), which is homologous to gyrA of topoisomerase II, and parE (subunit B), which is homologous to gyrB of topoisomerase II. More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=26.99 E-value=29 Score=13.81 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=20.6
Q ss_pred CCCCCCCHHHHH---------HHHHHHHHHHHCC---CCCCCCCCCCCHHH
Q ss_conf 102465213568---------8899999975225---55433367776136
Q gi|254780285|r 324 LLKSDGSYTYFA---------ADLAYFKCKYERG---FDNMIYVMGSDHSG 362 (586)
Q Consensus 324 l~rsDGt~~Y~t---------~DiA~~~~k~e~~---~d~~iyVv~~~Q~~ 362 (586)
++.|=|...|.- +|+|-|.-+.=.+ ...+++|.--+|..
T Consensus 548 ~~Ts~g~~In~pvh~La~~rwkd~g~hls~~~~n~~~~E~iv~v~~~~~fd 598 (745)
T TIGR01061 548 IFTSKGNLINLPVHKLADIRWKDLGEHLSNKITNFDENETIVAVEILNEFD 598 (745)
T ss_pred EEECCCCEEEEEEEECCCCCHHHHHHHHCCHHHHHHCCCCEEEEEEECCCC
T ss_conf 876166664213031456656689987200011021068489998613225
No 161
>cd02167 NMNAT_NadR The NMNAT domain of NadR protein. The NadR protein (hiNadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=26.91 E-value=21 Score=14.80 Aligned_cols=10 Identities=40% Similarity=0.793 Sum_probs=7.7
Q ss_pred CCCCHHHHHH
Q ss_conf 4411777778
Q gi|254780285|r 134 GPMHVGHCRC 143 (586)
Q Consensus 134 KplHVGHlRs 143 (586)
=|+|.||..-
T Consensus 8 ~P~H~GH~~l 17 (157)
T cd02167 8 APLHTGHQYL 17 (157)
T ss_pred CCCCCCHHHH
T ss_conf 7997378999
No 162
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA; InterPro: IPR014330 This small protein has a single S4 domain (IPR002942 from INTERPRO); it is also found in bacterial S4 ribosomal proteins, some pseudouridine synthases and tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members that are not near recF are found instead near dnaA and/or dnaN, the usual neighbours of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage..
Probab=26.21 E-value=34 Score=13.29 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=12.4
Q ss_pred CCHHHHHHHHHHHHH----HHHHHHHH
Q ss_conf 302456777776321----12345554
Q gi|254780285|r 405 GDFITLRHVVDEVGS----DSVRFMML 427 (586)
Q Consensus 405 G~~v~l~dll~evg~----~aiky~~L 427 (586)
+.+|||+.+|.++++ |++|+++.
T Consensus 6 tEyITLgQlLK~~~~i~sGG~AK~fL~ 32 (60)
T TIGR02988 6 TEYITLGQLLKELGIIDSGGQAKWFLQ 32 (60)
T ss_pred CCEECHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 341627678668856228257889870
No 163
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=25.91 E-value=33 Score=13.39 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=24.5
Q ss_pred EEEEECHH---HHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 87888888---9999999998562213887656554100022344322441177777856899
Q gi|254780285|r 89 INLYLSPS---YLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGD 148 (586)
Q Consensus 89 IN~~l~~~---~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGd 148 (586)
+|++|+-+ -|++.+.+.. +.+..-|.|+|||.. |-+|--.|.
T Consensus 1 l~VYLSGEIHtdWRe~I~~~~------------~~~~L~i~F~~PvTd------H~~SDdcG~ 45 (144)
T TIGR03646 1 LTVYLAGEIHTDWREEIKEGA------------KSKNLPIVFSGPVTD------HEASDNIGE 45 (144)
T ss_pred CEEEECCCCCCHHHHHHHHHH------------HHCCCCEEEECCCCC------CCHHHHHHH
T ss_conf 928772765443899999999------------876998487278889------700555138
No 164
>TIGR00337 PyrG CTP synthase; InterPro: IPR004468 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5 upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium .; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=25.74 E-value=38 Score=12.97 Aligned_cols=69 Identities=26% Similarity=0.406 Sum_probs=39.7
Q ss_pred HHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCC-CC
Q ss_conf 55887087521000158873010457999999999749851134267555654200024781565101102222222-10
Q gi|254780285|r 247 DDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRP-LL 325 (586)
Q Consensus 247 ~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~v-l~ 325 (586)
++|.++||.=|....-|+-- + ....+.|.+..|+.+..+++- ..|...--..| ++
T Consensus 205 KeLRs~Gi~PD~i~cRs~~~------l-----------------~~~~k~KiAlFCdV~~~aVI~-~~Da~sIY~vPl~L 260 (571)
T TIGR00337 205 KELRSLGIQPDIIICRSSEP------L-----------------DKSLKKKIALFCDVEEEAVIN-AEDASSIYEVPLLL 260 (571)
T ss_pred HHHHHCCCCCCEEEECCCCC------C-----------------CHHHHHHHHHCCCCCCCCEEE-EECCCCCCCCCCEE
T ss_conf 99986098886899818876------8-----------------977764521005889732578-65552401135210
Q ss_pred CCCCCHHHHHHHHH
Q ss_conf 24652135688899
Q gi|254780285|r 326 KSDGSYTYFAADLA 339 (586)
Q Consensus 326 rsDGt~~Y~t~DiA 339 (586)
.+.|--.|+.+-|-
T Consensus 261 ~~egl~~~~~~rl~ 274 (571)
T TIGR00337 261 KKEGLDDYLCRRLN 274 (571)
T ss_pred CCCCHHHHHHHHHC
T ss_conf 00433579999843
No 165
>TIGR01935 NOT-MenG RraA family; InterPro: IPR010203 This entry includes a number of closely related sequences bacteria and plants. The Escherichia coli member of this family has been characterised as a regulator of RNase E (see IPR004659 from INTERPRO), and its crystal structure has been analysed . E. coli RraA acts as a trans-acting modulator of RNA turnover, binding essential endonuclease RNase E and inhibiting RNA processing . RNase E forms the core of a large RNA-catalysis machine termed the degradosomes. RraA (and RraB) causes remodelling of degradosome composition, which is associated with alterations in RNA decay and global transcript abundance and as such is a bacterial mechanism for the regulation of RNA cleavage .; GO: 0008428 ribonuclease inhibitor activity, 0051252 regulation of RNA metabolic process.
Probab=25.58 E-value=25 Score=14.20 Aligned_cols=63 Identities=24% Similarity=0.345 Sum_probs=40.9
Q ss_pred EEEEECCCEEEEEE--CHHHHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 48854797687888--8889999999998562213887656554100022344322441177777856899999999850
Q gi|254780285|r 80 SVFIAGKGFINLYL--SPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFS 157 (586)
Q Consensus 80 ~vevagpGfIN~~l--~~~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~ 157 (586)
+-.++|| =.-++. |.+ .+++++.+ +++|+--||| ==|-+|-|+|||-|+-.-+-.
T Consensus 30 r~~F~G~-ivTvkcFEDNs----lvr~~L~q--------pG~GrVLVVD----------GgGSlr~ALlGd~lA~~A~~N 86 (155)
T TIGR01935 30 RAAFAGP-IVTVKCFEDNS----LVREVLEQ--------PGAGRVLVVD----------GGGSLRRALLGDNLAELAEEN 86 (155)
T ss_pred CCCCCCC-CEEEEEEECCH----HHHHHHHC--------CCCCCEEEEE----------CCCHHHHHCCCCHHHHHHHHC
T ss_conf 2324784-03899970473----68899825--------9997279995----------885010210167567886505
Q ss_pred CCCCCEEE
Q ss_conf 66641020
Q gi|254780285|r 158 GYEVTREY 165 (586)
Q Consensus 158 G~~V~r~n 165 (586)
||+=+-.|
T Consensus 87 GWeGviv~ 94 (155)
T TIGR01935 87 GWEGVIVH 94 (155)
T ss_pred CCCEEEEE
T ss_conf 95149996
No 166
>KOG0785 consensus
Probab=25.51 E-value=38 Score=12.94 Aligned_cols=37 Identities=5% Similarity=-0.093 Sum_probs=14.7
Q ss_pred HHHHHHHHHHCCC---CCCEEEEEEECCCEEEE---EECHHHHH
Q ss_conf 9999999983457---89731488547976878---88888999
Q gi|254780285|r 62 LTIAELIVARIKI---DPDVDSVFIAGKGFINL---YLSPSYLR 99 (586)
Q Consensus 62 ~~iA~~i~~~l~~---~~~i~~vevagpGfIN~---~l~~~~~~ 99 (586)
+||++.+.+-+.. .=..+.+.+ .|++-++ .+.++-+.
T Consensus 48 pEi~~av~kvf~aak~pIewd~~dv-~~~~~~~~~~~ip~~~~e 90 (365)
T KOG0785 48 PEISPAVKKVFEAAKVPIEWDFIDV-TPIKGPFGGKAIPDEAVE 90 (365)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCCCCCCCCHHHHH
T ss_conf 7789999999873189850255531-231258887528989999
No 167
>TIGR00482 TIGR00482 nicotinate (nicotinamide) nucleotide adenylyltransferase; InterPro: IPR005248 This family contains the predominant bacterial/eukaryotic adenylyltransferases for nicotinamide-nucleotide and for the deamido form, nicotinate nucleotide. Nicotinamide-nucleotide adenylyltransferase (2.7.7.1 from EC) synthesizes NAD by the salvage pathway, while nicotinate-nucleotide adenylyltransferase (2.7.7.18 from EC) synthesizes the immediate precursor of NAD by the de novo pathway. ; GO: 0016779 nucleotidyltransferase activity, 0009435 NAD biosynthetic process.
Probab=25.42 E-value=24 Score=14.31 Aligned_cols=38 Identities=21% Similarity=0.342 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHHHH-----CCCCC--CCCCCCCCHHHHHH
Q ss_conf 46521356888999999752-----25554--33367776136899
Q gi|254780285|r 327 SDGSYTYFAADLAYFKCKYE-----RGFDN--MIYVMGSDHSGYVK 365 (586)
Q Consensus 327 sDGt~~Y~t~DiA~~~~k~e-----~~~d~--~iyVv~~~Q~~h~~ 365 (586)
..|+.+|+..=|.++..|+. . -.+ ...|+|+|.-..|.
T Consensus 79 ~~~~~~YT~~Tl~~~~~~~~~GA~~~-~~~~kl~fiiG~D~l~~~~ 123 (229)
T TIGR00482 79 KRGGPSYTIDTLKHLKKKYPGGAVTP-DSEVKLYFIIGADALRSFP 123 (229)
T ss_pred HCCCCCCCHHHHHHHHHHCCCCCCCC-CCCCCEEEEECCCHHHHCC
T ss_conf 70797531899999999848986377-8896279984621141178
No 168
>pfam01467 CTP_transf_2 Cytidylyltransferase. This family includes: Cholinephosphate cytidylyltransferase. Glycerol-3-phosphate cytidylyltransferase.
Probab=25.25 E-value=29 Score=13.77 Aligned_cols=11 Identities=45% Similarity=0.942 Sum_probs=7.5
Q ss_pred CCCCHHHHHHH
Q ss_conf 44117777785
Q gi|254780285|r 134 GPMHVGHCRCA 144 (586)
Q Consensus 134 KplHVGHlRsa 144 (586)
-|.|.||++=+
T Consensus 7 dP~H~GHl~i~ 17 (148)
T pfam01467 7 DPIHLGHLRLL 17 (148)
T ss_pred CCCCHHHHHHH
T ss_conf 98879999999
No 169
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=25.18 E-value=34 Score=13.27 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=7.5
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999873158798
Q gi|254780285|r 567 ASIINSGLNIIGVES 581 (586)
Q Consensus 567 ~~vL~~~L~LLGI~~ 581 (586)
-.+....|++|||+.
T Consensus 166 d~~v~rvLD~lgI~~ 180 (191)
T COG0163 166 DFVVGRVLDLLGIEH 180 (191)
T ss_pred HHHHHHHHHHHCCCC
T ss_conf 999999999848997
No 170
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=25.10 E-value=38 Score=12.96 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=12.4
Q ss_pred CCCEECCCCCCCCCCC
Q ss_conf 5410002234432244
Q gi|254780285|r 120 GTKVNIEFVSANPTGP 135 (586)
Q Consensus 120 ~~kVvVE~sSpNp~Kp 135 (586)
.--|+||||+|+.+.+
T Consensus 69 ~~DV~IDFT~P~~~~~ 84 (266)
T COG0289 69 DADVLIDFTTPEATLE 84 (266)
T ss_pred CCCEEEECCCCHHHHH
T ss_conf 8988998998254699
No 171
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=25.05 E-value=18 Score=15.16 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=31.9
Q ss_pred HHHH-HHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHH
Q ss_conf 7785-6899999999850666410201477531455567898
Q gi|254780285|r 141 CRCA-VVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSV 181 (586)
Q Consensus 141 lRsa-iIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~ 181 (586)
+.++ .||+.++||+--+=......-|.||||.-+|.-++.+
T Consensus 58 lig~iLIGNNLvNilasalaT~~~irl~Gd~GvaIAt~~mT~ 99 (423)
T COG4536 58 LIGTILIGNNLVNILASALATILGIRLYGDAGVAIATGVLTF 99 (423)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 466656644089988999999999997153239999888899
No 172
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter; InterPro: IPR005898 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. This model describes a family of cyclic peptide transporters in bacteria. Syringomycin is an amphipathic, cyclic lipodepsipeptide when inserted into host causes formation of channels, permeable to a variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.; GO: 0005524 ATP binding, 0015197 peptide transporter activity, 0015833 peptide transport, 0016021 integral to membrane.
Probab=24.99 E-value=17 Score=15.44 Aligned_cols=36 Identities=22% Similarity=0.157 Sum_probs=18.9
Q ss_pred HHHHHHHHHHH-H----CCCCCCCCC---CCCCHHHHHHHHHHH
Q ss_conf 88899999975-2----255543336---777613689999999
Q gi|254780285|r 335 AADLAYFKCKY-E----RGFDNMIYV---MGSDHSGYVKRLEAV 370 (586)
Q Consensus 335 t~DiA~~~~k~-e----~~~d~~iyV---v~~~Q~~h~~~v~~~ 370 (586)
|+|+-|=+.|- - .=-||-||| |.+||+..|+|+|+.
T Consensus 468 TT~LS~GQ~KRLAL~~AyLE~RP~~~lDEWAADQDP~F~R~FY~ 511 (555)
T TIGR01194 468 TTDLSYGQRKRLALVNAYLEDRPVLLLDEWAADQDPAFKRVFYE 511 (555)
T ss_pred HHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHH
T ss_conf 21011213688999987763487246532102687863321053
No 173
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=24.89 E-value=39 Score=12.86 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 6788888888999987533
Q gi|254780285|r 451 VFYVQYAYARCRSIFRQAK 469 (586)
Q Consensus 451 ~~YiqYa~aR~~SIlrKa~ 469 (586)
.||.-|+ .|+..||+..+
T Consensus 20 ~P~C~f~-~~a~~lL~~~~ 37 (90)
T cd03028 20 EPRCGFS-RKVVQILNQLG 37 (90)
T ss_pred CCCCHHH-HHHHHHHHHHC
T ss_conf 9888779-99999999968
No 174
>cd07375 Anticodon_Ia_like Anticodon-binding domain of class Ia aminoacyl tRNA synthetases and similar domains. This domain is found in a variety of class Ia aminoacyl tRNA synthetases, C-terminal to the catalytic core domain. It recognizes and specifically binds to the anticodon of the tRNA. Aminoacyl tRNA synthetases catalyze the transfer of cognate amino acids to the 3'-end of their tRNAs by specifically recognizing cognate from non-cognate amino acids. Members include valyl-, leucyl-, isoleucyl-, cysteinyl-, arginyl-, and methionyl-tRNA synthethases. This superfamily also includes a domain from MshC, an enzyme in the mycothiol biosynthetic pathway.
Probab=24.89 E-value=39 Score=12.86 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 499899999999842189999999852812799999999998899987
Q gi|254780285|r 490 EFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWS 537 (586)
Q Consensus 490 ~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~ 537 (586)
..++..+-++..+......+.++.+.+..+..++-+|+....- .+|-
T Consensus 36 ~l~~~DrWIls~l~~~i~~v~~~~e~y~f~~a~~~l~~F~w~~-dwYi 82 (117)
T cd07375 36 LLEEADRELLARLQEFIKRTTNALEALDPTTAVQELFKFTNEL-NWYL 82 (117)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HHHH
T ss_conf 2776279999999899999999999278999999999999936-9999
No 175
>PRK01153 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=24.46 E-value=30 Score=13.65 Aligned_cols=13 Identities=46% Similarity=0.713 Sum_probs=5.0
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 9999985066641
Q gi|254780285|r 150 LASLMAFSGYEVT 162 (586)
Q Consensus 150 i~ril~~~G~~V~ 162 (586)
+.++++-.|++|.
T Consensus 105 ~~~lf~~~g~~v~ 117 (170)
T PRK01153 105 VAQLFREAGYEVR 117 (170)
T ss_pred HHHHHHHCCCEEE
T ss_conf 9998664497698
No 176
>COG1656 Uncharacterized conserved protein [Function unknown]
Probab=23.85 E-value=41 Score=12.73 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=16.8
Q ss_pred HHHHHHHHCCCCCCEEECCCCC
Q ss_conf 9999998506664102014775
Q gi|254780285|r 149 TLASLMAFSGYEVTREYYINDA 170 (586)
Q Consensus 149 si~ril~~~G~~V~r~nyvgD~ 170 (586)
.+||.|+.+||++.-.+-..|+
T Consensus 17 ~LARwLRllGydt~~~~~~~d~ 38 (165)
T COG1656 17 KLARWLRLLGYDTVYSSNESDD 38 (165)
T ss_pred HHHHHHHHCCCCEEEECCCCCH
T ss_conf 9999999808842542367838
No 177
>pfam09633 DUF2023 Protein of unknown function (DUF2023). This protein of approx.120 residues consists of three beta strands and five alpha helices, thought to fold into a homo-dimer. It is expressed in bacteria.
Probab=22.87 E-value=43 Score=12.60 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 979999999983457897314885479768788888899999999985
Q gi|254780285|r 60 DPLTIAELIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVV 107 (586)
Q Consensus 60 ~P~~iA~~i~~~l~~~~~i~~vevagpGfIN~~l~~~~~~~~l~~i~~ 107 (586)
-|..-++.+.++|....+---+.-+|++-||+|+-..-.-+.++.+..
T Consensus 22 ~~~~~~~~~~~rL~~~~I~y~iq~~~~~~vNlFFG~~~Ci~~ir~~~~ 69 (101)
T pfam09633 22 LPRREAEEATARLRKYGIDYHIQPVGTEKINVFFGRPECVEVIRHIVT 69 (101)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCCCEEEEECCHHHHHHHHHHHC
T ss_conf 677557999999986899869873589968887688899999999916
No 178
>cd00836 FERM_C The FERM_C domain is the third structural domain within the FERM domain. The FERM domain is found in the cytoskeletal-associated proteins such as ezrin, moesin, radixin, 4.1R, and merlin. These proteins provide a link between the membrane and cytoskeleton and are involved in signal transduction pathways. The FERM_C domain is also found in protein tyrosine phosphatases (PTPs) , the tryosine kinases FAKand JAK, in addition to other proteins involved in signaling. This domain is structuraly similar to the PH and PTB domains and consequently is capable of binding to both peptides and phospholipids at different sites.
Probab=22.64 E-value=43 Score=12.57 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=16.2
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 81279999999999889998
Q gi|254780285|r 517 EPYKLAFYLYDLASVFHGHW 536 (586)
Q Consensus 517 ~P~~l~~Yl~~La~~Fn~fY 536 (586)
.-+..|+|++.+|...|+||
T Consensus 72 ~~~~~ak~lwk~cve~H~Ff 91 (92)
T cd00836 72 PSHRACKYLWKLCVEQHAFF 91 (92)
T ss_pred CCHHHHHHHHHHHHHHHHHC
T ss_conf 98799999999998755143
No 179
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase; InterPro: IPR006539 These sequences represent the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other . These ATPases are found only in eukaryotes. ; GO: 0000287 magnesium ion binding, 0004012 phospholipid-translocating ATPase activity, 0005524 ATP binding, 0015914 phospholipid transport, 0016021 integral to membrane.
Probab=22.10 E-value=44 Score=12.50 Aligned_cols=39 Identities=10% Similarity=-0.093 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999984218999999985281279999999999889998706
Q gi|254780285|r 496 LQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHG 539 (586)
Q Consensus 496 ~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~ 539 (586)
++++..|.+|... .+..+.|..+=++- +...||-||..-
T Consensus 1026 kN~i~~~~~fWY~---~~~~F~g~~l~~~w--~~~~Yn~~FT~l 1064 (1249)
T TIGR01652 1026 KNLIFALILFWYS---FYNGFSGQTLYEDW--YMVLYNVFFTAL 1064 (1249)
T ss_pred HHHHHHHHHHHHH---HHHCCCCHHHHHHH--HHHHHHHHHHHH
T ss_conf 7899999999999---97418835678789--999999999742
No 180
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=22.03 E-value=44 Score=12.49 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=29.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 32244117777785689999999985066641020147
Q gi|254780285|r 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYIN 168 (586)
Q Consensus 131 Np~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvg 168 (586)
++-.|++=||.-|-++ ..++|.|.-.|+.+.|-||-|
T Consensus 34 ~HPHPl~gGtm~nkvv-~~la~~l~~~G~atlRfNfRg 70 (210)
T COG2945 34 CHPHPLFGGTMNNKVV-QTLARALVKRGFATLRFNFRG 70 (210)
T ss_pred CCCCCCCCCCCCCHHH-HHHHHHHHHCCCEEEEECCCC
T ss_conf 3898122676677999-999999986896389640332
No 181
>pfam04028 DUF374 Domain of unknown function (DUF374). Bacterial domain of unknown function.
Probab=21.99 E-value=44 Score=12.48 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=10.0
Q ss_pred HHHHHHHHHHCCCCCCEEE
Q ss_conf 9999999985066641020
Q gi|254780285|r 147 GDTLASLMAFSGYEVTREY 165 (586)
Q Consensus 147 Gdsi~ril~~~G~~V~r~n 165 (586)
|+-++++++..|++++|-.
T Consensus 22 Gei~a~~~~~~G~~~IrGS 40 (74)
T pfam04028 22 GELIARVLERLGIGTIRGS 40 (74)
T ss_pred HHHHHHHHHHCCCCEEECC
T ss_conf 7899999998098726644
No 182
>pfam08264 Anticodon_1 Anticodon-binding domain. This domain is found valyl and leucyl tRNA synthetases. It binds to the anticodon of the tRNA.
Probab=21.95 E-value=44 Score=12.48 Aligned_cols=20 Identities=20% Similarity=0.154 Sum_probs=7.9
Q ss_pred HHHHHHHHHCCC--HHHHHHHH
Q ss_conf 999999985281--27999999
Q gi|254780285|r 507 RVIENATIAQEP--YKLAFYLY 526 (586)
Q Consensus 507 ~vi~~a~~~~~P--~~l~~Yl~ 526 (586)
.++.....-+.| -.+|.+++
T Consensus 68 ~~l~~~l~ll~P~~PfitEeiw 89 (148)
T pfam08264 68 EVLETLLRLLAPFMPFITEELW 89 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998331088899999
No 183
>pfam02948 Amelogenin Amelogenin. Amelogenins play a role in biomineralisation. They seem to regulate the formation of crystallites during the secretory stage of tooth enamel development. thought to play a major role in the structural organisation and mineralisation of developing enamel. They are found in the extracellular matrix. Mutations in X-chromosomal amelogenin can cause Amelogenesis imperfecta.
Probab=21.85 E-value=42 Score=12.63 Aligned_cols=31 Identities=19% Similarity=0.529 Sum_probs=18.7
Q ss_pred CCCEEEEEE---CH-HHHHHHHHHHHHCCHHCCCCCCC
Q ss_conf 797687888---88-89999999998562213887656
Q gi|254780285|r 85 GKGFINLYL---SP-SYLRKILSSIVVSGIEYGRNLIG 118 (586)
Q Consensus 85 gpGfIN~~l---~~-~~~~~~l~~i~~~~~~yG~~~~~ 118 (586)
-||||||.- +. +|..+.++ ..-.+||-..+|
T Consensus 9 hpgy~n~syevltplkwyqsm~~---~~ypsygyepmg 43 (174)
T pfam02948 9 HPGYVNFSYEVLTPLKWYQSLMR---HQYPSYGYEPMG 43 (174)
T ss_pred CCCEEEEEEEECCHHHHHHHHHC---CCCCCCCCCCCC
T ss_conf 98745655553244789998761---778776756563
No 184
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=21.82 E-value=40 Score=12.79 Aligned_cols=28 Identities=32% Similarity=0.623 Sum_probs=14.7
Q ss_pred CCCCEECC--CCCCCCCCCCCHHHHHHHHH
Q ss_conf 55410002--23443224411777778568
Q gi|254780285|r 119 KGTKVNIE--FVSANPTGPMHVGHCRCAVV 146 (586)
Q Consensus 119 ~~~kVvVE--~sSpNp~KplHVGHlRsaiI 146 (586)
+|.-+.|| |.+-|+--.+-||++|.+++
T Consensus 59 ~P~~vaiE~~f~~~n~~tal~lg~arGvi~ 88 (154)
T cd00529 59 QPDVVAIERVFFAKNPDSALKLGQARGALI 88 (154)
T ss_pred CCCEEEEEHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 997898654656018888999999999999
No 185
>COG0649 NuoD NADH:ubiquinone oxidoreductase 49 kD subunit 7 [Energy production and conversion]
Probab=21.59 E-value=42 Score=12.62 Aligned_cols=12 Identities=17% Similarity=0.066 Sum_probs=4.3
Q ss_pred CEEEEEEECCCEE
Q ss_conf 7314885479768
Q gi|254780285|r 77 DVDSVFIAGKGFI 89 (586)
Q Consensus 77 ~i~~vevagpGfI 89 (586)
.|.+++.. +||+
T Consensus 40 ~Vv~~~p~-iGyl 51 (398)
T COG0649 40 IVVDADPD-IGYL 51 (398)
T ss_pred EEEEECCC-CCCC
T ss_conf 88860586-6630
No 186
>pfam03192 DUF257 Pyrococcus protein of unknown function, DUF257.
Probab=21.46 E-value=43 Score=12.58 Aligned_cols=39 Identities=18% Similarity=0.148 Sum_probs=20.8
Q ss_pred CCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 5655410002234432244117777785689999999985066641020
Q gi|254780285|r 117 IGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREY 165 (586)
Q Consensus 117 ~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~n 165 (586)
..-|++|+|||+|.-|. |. +- ..+.+-.+-.|+.|.-.-
T Consensus 8 ~k~GEtVLvEysS~~~~---~l--~~-----~~ii~~~~e~g~~ilI~D 46 (210)
T pfam03192 8 IKFGETVLIEYSSSSIP---EL--LF-----YEIIKWAKEKGIPIVIDD 46 (210)
T ss_pred CCCCCEEEEEECCCCCH---HH--HH-----HHHHHHHHHCCCCEEEEE
T ss_conf 88998899994799847---88--99-----999999997699389995
No 187
>TIGR01616 nitro_assoc nitrogenase-associated protein; InterPro: IPR006503 This set of sequences describe a small family of uncharacterised proteins only found so far in alpha and gamma proteobacteria and in the Cyanobacterium Nostoc sp. PCC 7120. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. .
Probab=20.28 E-value=45 Score=12.41 Aligned_cols=16 Identities=25% Similarity=0.324 Sum_probs=12.2
Q ss_pred HHHHHCCCCCCEEECC
Q ss_conf 9998506664102014
Q gi|254780285|r 152 SLMAFSGYEVTREYYI 167 (586)
Q Consensus 152 ril~~~G~~V~r~nyv 167 (586)
-+|+++||+|+.+|-.
T Consensus 19 a~L~asGH~v~v~dil 34 (131)
T TIGR01616 19 ALLKASGHDVEVRDIL 34 (131)
T ss_pred HHHHHCCCEEEEEECC
T ss_conf 9998559846541000
No 188
>cd02039 cytidylyltransferase_like Cytidylyltransferase-like domain.Many ofthese proteins are known to use CTP or ATP and release pyrophosphate. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown.
Probab=20.11 E-value=42 Score=12.63 Aligned_cols=10 Identities=40% Similarity=0.869 Sum_probs=7.2
Q ss_pred CCCCHHHHHH
Q ss_conf 4411777778
Q gi|254780285|r 134 GPMHVGHCRC 143 (586)
Q Consensus 134 KplHVGHlRs 143 (586)
=|+|.||++=
T Consensus 8 Dp~H~GH~~l 17 (141)
T cd02039 8 DPVHLGHLAL 17 (141)
T ss_pred CCCCHHHHHH
T ss_conf 8767999999
Done!