HHsearch alignment for GI: 254780285 and conserved domain: pfam00749
>pfam00749 tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain. Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Probab=99.22 E-value=4.8e-11 Score=96.43 Aligned_cols=238 Identities=20% Similarity=0.206 Sum_probs=100.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHH------HHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf 344322441177777856899999999850666410201477531455------56789875322210245000660110
Q gi|254780285|r 128 VSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQIN------TLALSVFWRYQQALYNNDSDLPEGYY 201 (586)
Q Consensus 128 sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~------~li~~~~~~~~~~~~~~~~~~~e~~~ 201 (586)
T Consensus 6 FAPSPTG~lHiG~~rtAl~n~l~Ar~~--~G~fiLR---IEDtD~~R~~~e~~~~I~~dL~wLGl~w--D------e--- 69 (314)
T pfam00749 6 FAPSPTGYLHIGHARTALFNYLFAKNY--NGKFILR---FDDTDPEREKPEYEESILEDLKWLGIKW--D------E--- 69 (314)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH--CCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHHCCCC--C------C---
T ss_conf 288989864489999999999999980--9989999---6878988687689999999999953789--9------8---
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEECHHHHHHCCHHHHHHHHHHH
Q ss_conf 241000012788888757641343023799999997899887545558870875-2100015887301045799999999
Q gi|254780285|r 202 PGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQ-HDIFISEDDFHRGDPSPIRDIIDNL 280 (586)
Q Consensus 202 ~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~-fD~~~~Es~~~~~~~~~i~~~i~~l 280 (586)
T Consensus 70 -~~~~QS~r~~~Y~~~~~~L~~~g~-a----Y~C~cs~~el~~~r~~~~~~~~~~~~~y~~~~~------~l~~~~~~~~ 137 (314)
T pfam00749 70 -KPYYQSDRFDIYYKYAEELIEKGL-A----YVCFCTPEELEEEREEQEALGSPERPRYDEECL------RLFEEEMRKG 137 (314)
T ss_pred -CCEEHHCCHHHHHHHHHHHHHCCC-C----CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHC------CCCHHHHHCC
T ss_conf -835520209999999999997499-5----225899999999998776359998998832202------2799998615
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCC
Q ss_conf 97498511342675556542000247815651011022222221024652135688899999975225554333-67776
Q gi|254780285|r 281 ARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIY-VMGSD 359 (586)
Q Consensus 281 ~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iy-Vv~~~ 359 (586)
T Consensus 138 ~~~~~~~~~R~k~~~~~~~~~~D~v~G~i~~~~~~~~---D~vi~R~dg~ptY~---lA~vVDD~---~~~IThViRG~D 208 (314)
T pfam00749 138 EAEGGKATLRFKIPMESPYVMRDLVRGRIKFEPSALH---DRTGLKWDGYPTYD---FAVVIDDA---IMGITHVLRGEE 208 (314)
T ss_pred CCCCCCCEEEEECCCCCCEEEECCCCCEEEECHHHCC---CCEEECCEEEEEEE---EEEEECCC---CCCCCEEECCCC
T ss_conf 0258872278850688862676576653884445388---61764460545652---30587255---688883756601
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCH
Q ss_conf 136899999999972266345115311011012211000001223302
Q gi|254780285|r 360 HSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDF 407 (586)
Q Consensus 360 Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~ 407 (586)
T Consensus 209 ~l~~T~~Q~~l~~aLg~~~P~y~H~pl---i~~~~G~--kLSKR~~~~ 251 (314)
T pfam00749 209 HLDNTPKQIWIYQALGWEVPPFIHEYL---RLNLDGT--KLSKRKLSL 251 (314)
T ss_pred CCCCCHHHHHHHHHCCCCCCCEEEEEE---EECCCCC--CCCCCCCHH
T ss_conf 001889999999963999985698870---8989998--533727621