HHsearch alignment for GI: 254780285 and conserved domain: pfam01921
>pfam01921 tRNA-synt_1f tRNA synthetases class I (K). This family includes only lysyl tRNA synthetases from prokaryotes.
Probab=98.81 E-value=6.2e-08 Score=74.60 Aligned_cols=275 Identities=19% Similarity=0.324 Sum_probs=142.7
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 41000223443224411777778568999999998506664102014775314555678987532221024500066011
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
T Consensus 19 ~~~v~~-tG~~PSG~~HIGnfrEv~~~~~V~~al~~~g~~~~~i~~~DD~D~----------------lRKVP~nlp~~- 80 (355)
T pfam01921 19 GEILVE-TGIGPSGLPHIGNFREVLRTDAVRRALRKRGFETRLIYFSDDMDG----------------LRKVPDNVPNS- 80 (355)
T ss_pred CCEEEE-CCCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCEEEEEEECCCCC----------------CCCCCCCCCCH-
T ss_conf 858995-266899886421560179999999999974987699998215651----------------01378899998-
Q ss_pred CCCCCHHHHHHHHHHHHH-HHHHCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCH--------
Q ss_conf 024100001278888875-764134302-3799999997899887545558870875210001588730104--------
Q gi|254780285|r 201 YPGVYLKHVGKELADKYS-SELLNFPEE-KWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDP-------- 270 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~-~~~~~~~e~-~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~-------- 270 (586)
T Consensus 81 -----------e~~~~ylg~Pl~~IPdP~g~~~---Sy-a~h~~~~~~~~L~~~gi~~ef~s-~te~Y~sG~~~~~i~~~ 144 (355)
T pfam01921 81 -----------EMLEKYLGKPLTRIPDPFGCHE---SY-AEHFNAPFLEFLDRFGIEYEFIS-ATELYKSGLYDEAILIA 144 (355)
T ss_pred -----------HHHHHCCCCCCEECCCCCCCCC---CH-HHHHHHHHHHHHHHCCCEEEEEE-HHHHHHCCCHHHHHHHH
T ss_conf -----------9998736975213479888745---59-99999999999998398289986-78855246559999999
Q ss_pred ----HHHHHHHHHHHHCCCC--CCCCCCC--CCCCC--CCC--CCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ----5799999999974985--1134267--55565--420--0024781565101102222222102465213568889
Q gi|254780285|r 271 ----SPIRDIIDNLARQGYV--YEGILPP--PKSKT--TQK--CDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADL 338 (586)
Q Consensus 271 ----~~i~~~i~~l~~~g~~--~e~~~~~--~~~~~--~~~--~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~Di 338 (586)
T Consensus 145 l~~~~~I~~Il~~~~g~e~~~~y~Pf~piC~~cGrv~~t~v~~~d~~~~~v~Y~c-~cG~~~~~~~~~g~---------- 213 (355)
T pfam01921 145 LENRDEIMEILLPYRGEERQETYSPFLPICPKCGRVLTTPVVEYDAEGGTITYRC-ECGHEGEVDITGGN---------- 213 (355)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCEEEEEEEEEECCCCEEEEEC-CCCCEEEEEECCCC----------
T ss_conf 9858999999998528666887368988858889372568999967898799986-99988998411576----------
Q ss_pred HHHHHHHHCCCCCCCC-C----CCCCHHH---HHHHHHHHH-HHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHH
Q ss_conf 9999975225554333-6----7776136---899999999-97226634511531101101221100000122330245
Q gi|254780285|r 339 AYFKCKYERGFDNMIY-V----MGSDHSG---YVKRLEAVA-AAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFIT 409 (586)
Q Consensus 339 A~~~~k~e~~~d~~iy-V----v~~~Q~~---h~~~v~~~~-~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~ 409 (586)
T Consensus 214 ~KL~WkvDW~mRW~~lgVdfEp~GKDh~~~GGS~~~~~~I~~~i~g~~pP--~~~~YE~~~~-kgg~--KmSsSkGn~is 288 (355)
T pfam01921 214 GKLQWKVDWAMRWAALGVDFEPFGKDHAAPGGSYDTSSRIAREILGGEPP--EPFPYELILL-KGGG--KMSSSKGNGIT 288 (355)
T ss_pred CCCCCCCCCHHEEEEECCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCC--CCCCEEEEEE-CCCC--CCCCCCCCCCC
T ss_conf 66787566333057856348625743246787622289999997099999--9886578996-6997--10468898769
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 677777632112345554200012333447776532
Q gi|254780285|r 410 LRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQ 445 (586)
Q Consensus 410 l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~ 445 (586)
T Consensus 289 ~~e~L~~~~pE~Lr~l~~~~~P~~a~~l~fd~ip~~ 324 (355)
T pfam01921 289 IEEWLEYAPPESLRFLMFRVKPKKAKRLDFDVIPKL 324 (355)
T ss_pred HHHHHHHCCHHHHHHHHCCCCCCCCEEECCCHHHHH
T ss_conf 999998669999999980428884512073044668