HHsearch alignment for GI: 254780285 and conserved domain: pfam03485

>pfam03485 Arg_tRNA_synt_N Arginyl tRNA synthetase N terminal domain. This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.
Probab=99.71  E-value=4.8e-17  Score=138.55  Aligned_cols=83  Identities=33%  Similarity=0.470  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf             99999999999998604888212245277417880127411048999888828997999999998345789731488547
Q gi|254780285|r    6 DFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDSVFIAG   85 (586)
Q Consensus         6 ~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~vevag   85 (586)
T Consensus         2 ~l~~~i~~al~~~----~~~~~-~~~~~ie~~~~~~~GD~~~n~a~~lak~~~~~P~~iA~~i~~~l~~~~~i~~v~vag   76 (84)
T pfam03485         2 LLKKAIAAALAKA----GLDLE-EIDPVIETPKDPEFGDYATNVAMLLAKKLKKNPREIAEEIAEKLPKSDLIEKVEIAG   76 (84)
T ss_pred             HHHHHHHHHHHHC----CCCCC-CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf             7899999999986----99823-176588779999776525689999852237998999999999725678676999958


Q ss_pred             CCEEEEEE
Q ss_conf             97687888
Q gi|254780285|r   86 KGFINLYL   93 (586)
Q Consensus        86 pGfIN~~l   93 (586)
T Consensus        77 pGfiN~~l   84 (84)
T pfam03485        77 PGFINFFL   84 (84)
T ss_pred             CCEEEEEC
T ss_conf             97798869