HHsearch alignment for GI: 254780285 and conserved domain: pfam03485
>pfam03485 Arg_tRNA_synt_N Arginyl tRNA synthetase N terminal domain. This domain is found at the amino terminus of Arginyl tRNA synthetase, also called additional domain 1 (Add-1). It is about 140 residues long and it has been suggested that this domain will be involved in tRNA recognition.
Probab=99.71 E-value=4.8e-17 Score=138.55 Aligned_cols=83 Identities=33% Similarity=0.470 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEEC
Q ss_conf 99999999999998604888212245277417880127411048999888828997999999998345789731488547
Q gi|254780285|r 6 DFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDSVFIAG 85 (586)
Q Consensus 6 ~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~vevag 85 (586)
T Consensus 2 ~l~~~i~~al~~~----~~~~~-~~~~~ie~~~~~~~GD~~~n~a~~lak~~~~~P~~iA~~i~~~l~~~~~i~~v~vag 76 (84)
T pfam03485 2 LLKKAIAAALAKA----GLDLE-EIDPVIETPKDPEFGDYATNVAMLLAKKLKKNPREIAEEIAEKLPKSDLIEKVEIAG 76 (84)
T ss_pred HHHHHHHHHHHHC----CCCCC-CCCEEEECCCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEEC
T ss_conf 7899999999986----99823-176588779999776525689999852237998999999999725678676999958
Q ss_pred CCEEEEEE
Q ss_conf 97687888
Q gi|254780285|r 86 KGFINLYL 93 (586)
Q Consensus 86 pGfIN~~l 93 (586)
T Consensus 77 pGfiN~~l 84 (84)
T pfam03485 77 PGFINFFL 84 (84)
T ss_pred CCEEEEEC
T ss_conf 97798869