HHsearch results for GI: 254780285 and protein with PDBid: 1ffy_A

>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.69  E-value=4.2e-14  Score=116.37  Aligned_cols=170  Identities=20%  Similarity=0.240  Sum_probs=110.3

Q ss_pred             CCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             336777613-6899999999972266345115311011012211000001223302456777776321123455542000
Q gi|254780285|r  353 IYVMGSDHS-GYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN  431 (586)
Q Consensus       353 iyVv~~~Q~-~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~  431 (586)
                      +|+.|.||- .||.........+....+--.++..||| +.++|+  |||+.+||+|..++++++-|.+++|+..++..+
T Consensus       551 l~i~G~D~~r~wf~~~l~~~~~~~~~~Pfk~v~~hG~v-ld~~G~--KMSKS~GNvi~P~~ii~~yGaD~lRl~~~~~~~  627 (917)
T 1ffy_A          551 MYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFV-MDGEGK--KMSKSLGNVIVPDQVVKQKGADIARLWVSSTDY  627 (917)
T ss_dssp             EEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCE-ECTTSC--CCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCT
T ss_pred             EEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEE-ECCCCC--CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCC
T ss_conf             03336079750789998776641798851078741329-999988--776678897795675343081699999970985


Q ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             12333447776532024436788888888999987533200246832234223552114998999999998421899999
Q gi|254780285|r  432 SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIEN  511 (586)
Q Consensus       432 ~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~  511 (586)
                      ..++.|+.+.+... . +.       +-++...+|-.-......+.   .....+ ...+....+-++..+..+-..+.+
T Consensus       628 ~~d~~~~~~~~~~~-~-~~-------~~kl~n~~r~~~~~~~~~~~---~~~~~~-~~~l~~lD~~il~~l~~~i~~v~~  694 (917)
T 1ffy_A          628 LADVRISDEILKQT-S-DD-------YRKIRNTLRFMLGNINDFNP---DTDSIP-ESELLEVDRYLLNRLREFTASTIN  694 (917)
T ss_dssp             TSCEECCHHHHHHH-H-HH-------HHHHHHHHHHHHHTSTTCCH---HHHCCC-GGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH-H-HH-------HHHHHHHHHHHHHCCCCCCC---CCCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             46741178889999-9-99-------99999999999850123474---224554-344338889999999999999999


Q ss_pred             HHHHCCCHHHHHHHHHHHH-HHHHHHHH
Q ss_conf             9985281279999999999-88999870
Q gi|254780285|r  512 ATIAQEPYKLAFYLYDLAS-VFHGHWSH  538 (586)
Q Consensus       512 a~~~~~P~~l~~Yl~~La~-~Fn~fY~~  538 (586)
                      +++++.-|..+.-+++... .+++||-.
T Consensus       695 ~~e~~~f~~~~~~l~~F~~~~ls~~Y~~  722 (917)
T 1ffy_A          695 NYENFDYLNIYQEVQNFINVELSNFYLD  722 (917)
T ss_dssp             HHHTTCHHHHHHHHHHHHHCCCCCCHHH
T ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9971228999999999999988899999