HHsearch results for GI: 254780285 and protein with PDBid: 1ffy_A
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.69 E-value=4.2e-14 Score=116.37 Aligned_cols=170 Identities=20% Similarity=0.240 Sum_probs=110.3
Q ss_pred CCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 336777613-6899999999972266345115311011012211000001223302456777776321123455542000
Q gi|254780285|r 353 IYVMGSDHS-GYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN 431 (586)
Q Consensus 353 iyVv~~~Q~-~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~ 431 (586)
+|+.|.||- .||.........+....+--.++..||| +.++|+ |||+.+||+|..++++++-|.+++|+..++..+
T Consensus 551 l~i~G~D~~r~wf~~~l~~~~~~~~~~Pfk~v~~hG~v-ld~~G~--KMSKS~GNvi~P~~ii~~yGaD~lRl~~~~~~~ 627 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFV-MDGEGK--KMSKSLGNVIVPDQVVKQKGADIARLWVSSTDY 627 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCE-ECTTSC--CCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCT
T ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEE-ECCCCC--CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 03336079750789998776641798851078741329-999988--776678897795675343081699999970985
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 12333447776532024436788888888999987533200246832234223552114998999999998421899999
Q gi|254780285|r 432 SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIEN 511 (586)
Q Consensus 432 ~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~ 511 (586)
..++.|+.+.+... . +. +-++...+|-.-......+. .....+ ...+....+-++..+..+-..+.+
T Consensus 628 ~~d~~~~~~~~~~~-~-~~-------~~kl~n~~r~~~~~~~~~~~---~~~~~~-~~~l~~lD~~il~~l~~~i~~v~~ 694 (917)
T 1ffy_A 628 LADVRISDEILKQT-S-DD-------YRKIRNTLRFMLGNINDFNP---DTDSIP-ESELLEVDRYLLNRLREFTASTIN 694 (917)
T ss_dssp TSCEECCHHHHHHH-H-HH-------HHHHHHHHHHHHHTSTTCCH---HHHCCC-GGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-H-HH-------HHHHHHHHHHHHHCCCCCCC---CCCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46741178889999-9-99-------99999999999850123474---224554-344338889999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 9985281279999999999-88999870
Q gi|254780285|r 512 ATIAQEPYKLAFYLYDLAS-VFHGHWSH 538 (586)
Q Consensus 512 a~~~~~P~~l~~Yl~~La~-~Fn~fY~~ 538 (586)
+++++.-|..+.-+++... .+++||-.
T Consensus 695 ~~e~~~f~~~~~~l~~F~~~~ls~~Y~~ 722 (917)
T 1ffy_A 695 NYENFDYLNIYQEVQNFINVELSNFYLD 722 (917)
T ss_dssp HHHTTCHHHHHHHHHHHHHCCCCCCHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9971228999999999999988899999