HHsearch results for GI: 254780285 and protein with PDBid: 1gax_A
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.71 E-value=5e-15 Score=122.82 Aligned_cols=163 Identities=23% Similarity=0.242 Sum_probs=98.7
Q ss_pred CCCCCCHH-HHHHHHHHH-HHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 36777613-689999999-997226634511531101101221100000122330245677777632112345554200-
Q gi|254780285|r 354 YVMGSDHS-GYVKRLEAV-AAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK- 430 (586)
Q Consensus 354 yVv~~~Q~-~h~~~v~~~-~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~- 430 (586)
+++|-|+- .|+...... +...|.... -.++..|+| +..+|+ |||+-+||+|..+|++++-|.+|+||++++..
T Consensus 485 ~~~G~Dii~~w~~~~~~~~~~~~~~~p~-k~v~~hG~v-l~~~G~--KMSKS~GNvi~p~~~i~kyGaDalR~~l~~~~~ 560 (862)
T 1gax_A 485 LVTGYDILFLWVSRMEVSGYHFMGERPF-KTVLLHGLV-LDEKGQ--KMSKSKGNVIDPLEMVERYGADALRFALIYLAT 560 (862)
T ss_dssp EEEEGGGTTTTHHHHHHHHHHHSSSCSB-SEEEEECCE-ECTTSC--BCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCC
T ss_pred EEEEEHHHHHHHHHHHHHHHHHCCCCCC-CEEEEECEE-ECCCCC--CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 9862567777999999975764498886-668871419-988986--677889997998999988197198888887506
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 01233344777653202443678888888899998753320024683223422355211499899999999842189999
Q gi|254780285|r 431 NSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIE 510 (586)
Q Consensus 431 ~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~ 510 (586)
+..+..||++.+... .|-+--+..+...+ +.... .... .....+...+.++..+......+.
T Consensus 561 ~~~D~~~~~~~~~~~--~n~~~kl~n~~~~~---~~~~~----~~~~---------~~~~~~~~d~wils~l~~~~~~v~ 622 (862)
T 1gax_A 561 GGQDIRLDLRWLEMA--RNFANKLYNAARFV---LLSRE----GFQA---------KEDTPTLADRFMRSRLSRGVEEIT 622 (862)
T ss_dssp TTCCEECCHHHHHHH--HHHHHHHHHHHHHH---HHHSS----SCCC---------CBCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHH--HHHHHHHHHHHHHH---HHCCC----CCCC---------CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 776422556999999--99999999999999---96213----4666---------667751778999988899999999
Q ss_pred HHHHHCCCHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 9998528127999999999-988999870
Q gi|254780285|r 511 NATIAQEPYKLAFYLYDLA-SVFHGHWSH 538 (586)
Q Consensus 511 ~a~~~~~P~~l~~Yl~~La-~~Fn~fY~~ 538 (586)
.+.+.+..+..++.+++.. ..|..+|-.
T Consensus 623 ~~~~~~~~~~a~~~i~~f~~~~~~~~y~e 651 (862)
T 1gax_A 623 ALYEALDLAQAAREVYELVWSEFCDWYLE 651 (862)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87774689999999999889999888998