HHsearch results for GI: 254780285 and protein with PDBid: 1j09_A
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.27 E-value=3.3e-10 Score=89.08 Aligned_cols=273 Identities=22% Similarity=0.177 Sum_probs=139.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHH------HHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 0223443224411777778568999999998506664102014775314------5556789875322210245000660
Q gi|254780285|r 125 IEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQ------INTLALSVFWRYQQALYNNDSDLPE 198 (586)
Q Consensus 125 VE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q------~~~li~~~~~~~~~~~~~~~~~~~e 198 (586)
|==.-|.|||+||+||+|++++-.-+||- .-|-=+.| +.|.-.+ ...+.-.+.|...++......
T Consensus 3 vtRfaPsPtG~lHiG~~rtal~n~~~ak~--~~G~f~LR---ieDtD~~R~~~~~~~~I~~~l~wlGl~wDegp~~---- 73 (468)
T 1j09_A 3 VTRIAPSPTGDPHVGTAYIALFNYAWARR--NGGRFIVR---IEDTDRARYVPGAEERILAALKWLGLSYDEGPDV---- 73 (468)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHHH--TTCEEEEC---BCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTT----
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC----
T ss_conf 68438898974107999999999999998--39989998---6879977478799999999999869976658677----
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHH
Q ss_conf 110241000012788888757641343-------0237999999978998875455588708752100015887301045
Q gi|254780285|r 199 GYYPGVYLKHVGKELADKYSSELLNFP-------EEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPS 271 (586)
Q Consensus 199 ~~~~~~y~~~~~~e~~~~~~~~~~~~~-------e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~ 271 (586)
+.-.+.|......+.+.++..++.+.. .++.... .+.. . ..++. ... .
T Consensus 74 ~~~~~~~~QS~r~~~y~~~~~~L~~~g~aY~c~cs~~~l~~------------~r~~--~--~~~~~---~~~------~ 128 (468)
T 1j09_A 74 GGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQ------------IRKE--K--GGYDG---RAR------N 128 (468)
T ss_dssp BCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHH------------HHHH--H--SSCCC---GGG------G
T ss_pred CCCCCCEEHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHH------------HHHH--C--CCCCC---CCC------C
T ss_conf 88988643862799999999999974996642687899998------------8752--3--78874---344------4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 79999999997498511342675556542000247815651011022222221024652135688899999975225554
Q gi|254780285|r 272 PIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDN 351 (586)
Q Consensus 272 ~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~ 351 (586)
...+.......+|..+.-.+..+........+.-.+.+.++....+ |.|+.|+||++|| ++|...+=..-+...
T Consensus 129 ~~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~i~g~~~~~~~~~~---D~vi~r~dg~p~y---~~a~~vdD~~~~ith 202 (468)
T 1j09_A 129 IPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIP---DVVLLKSDGYPTY---HLANVVDDHLMGVTD 202 (468)
T ss_dssp SCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSC---CCEEECTTSCBCH---HHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHCCEEEECCCCCC---CEEEECCCCCCCE---EECCCCCCCCCCCCH
T ss_conf 6888888888579973899864766676456200332663455589---9699833787131---203203641037654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HH
Q ss_conf 33367776136899999999972266345115311011012211000001223302456777776-------------32
Q gi|254780285|r 352 MIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VG 418 (586)
Q Consensus 352 ~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg 418 (586)
+ |=|.|+-....+=..+.+.+|++.+.+.|+.. + +..+|+ |+|+|.|... +.+.-++ +|
T Consensus 203 v--irg~d~~~~~~~~~~l~~~l~~~~p~~~h~pl--~-~~~~g~--klsKr~~~~~-~~~~~~~G~~p~a~~NyLa~LG 274 (468)
T 1j09_A 203 V--IRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL--L-RNPDKT--KISKRKSHTS-LDWYKAEGFLPEALRNYLCLMG 274 (468)
T ss_dssp E--EEEGGGGGGHHHHHHHHHHHTCCCCEEEEECC--C-BCTTSC--BCCTTTSCCB-HHHHHHTTCCHHHHHHHHHHHS
T ss_pred H--HHCCCCCCCCHHHHHHHHHCCCCCCCCEECCC--E-ECCCCC--CCCCCCCCCC-CHHHHHCCCCHHHHHHHHHHHC
T ss_conf 5--41134200678999999962689983101375--2-357997--0467689733-1127545998799999999936
Q ss_pred ------------HHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf ------------112345554200012333447776532
Q gi|254780285|r 419 ------------SDSVRFMMLWRKNSELLDFDFCKVKEQ 445 (586)
Q Consensus 419 ------------~~aiky~~L~~~~~~~~~Fd~d~~l~~ 445 (586)
...+..|+|++=..+.-.||++++...
T Consensus 275 ws~~d~~Ei~sl~eli~~Fdl~~i~ks~A~FD~~KL~~l 313 (468)
T 1j09_A 275 FSMPDGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWM 313 (468)
T ss_dssp CCCTTCCSCCCHHHHHHHCCGGGCCCSCCBCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 998750255667778887423026777654659999999