HHsearch results for GI: 254780285 and protein with PDBid: 1li5_A
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.61 E-value=4.4e-12 Score=102.20 Aligned_cols=349 Identities=19% Similarity=0.225 Sum_probs=178.7
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
-.+.+|-+=-+.|-|..+.||||+|+.|..|.|+|.|++.||+|.-.-=+-|.+-.+
T Consensus 18 ~~~~~v~~Y~CGpTvy~~~HiGhar~~v~~D~l~R~l~~~G~~V~~v~nitDiddKi----------------------- 74 (461)
T 1li5_A 18 IHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI----------------------- 74 (461)
T ss_dssp SSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHH-----------------------
T ss_pred CCCCEEEEEECCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH-----------------------
T ss_conf 899958999468857898441014029999999999997599518997416123899-----------------------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CEECHHHHHHCCHHHHHHH
Q ss_conf 011024100001278888875764134302379999999789988754555887087521-0001588730104579999
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHD-IFISEDDFHRGDPSPIRDI 276 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD-~~~~Es~~~~~~~~~i~~~ 276 (586)
.....+. ..... ++ .+...+.+.+.++.|||..+ .+...++.. ..+-++
T Consensus 75 ----------------~~~A~~~------g~~~~---e~-~~~~~~~f~~~~~~L~i~~~~~~~r~t~~i----~~~i~~ 124 (461)
T 1li5_A 75 ----------------IKRANEN------GESFV---AM-VDRMIAEMHKDFDALNILRPDMEPRATHHI----AEIIEL 124 (461)
T ss_dssp ----------------HHHHHHT------TCCHH---HH-HHHHHHHHHHHHHHTTCCCCSBCCBGGGCH----HHHHHH
T ss_pred ----------------HHHHHHH------CCCHH---HH-HHHHHHHHHHHHHHHCCCCCCEEECCCHHH----HHHHHH
T ss_conf ----------------9999984------95999---99-999999999999995799998741114899----999999
Q ss_pred HHHHHHCCCCCCCCCC-----CCCCCCCCCCC------CCCCCEEEEHHHCC-CCCCCCCCC--CCCCHHHHH-------
Q ss_conf 9999974985113426-----75556542000------24781565101102-222222102--465213568-------
Q gi|254780285|r 277 IDNLARQGYVYEGILP-----PPKSKTTQKCD------MDRKQLLFRSTMVG-DDVDRPLLK--SDGSYTYFA------- 335 (586)
Q Consensus 277 i~~l~~~g~~~e~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~g-~~~d~vl~r--sDGt~~Y~t------- 335 (586)
+++|.++|++|..... ..+........ ...+.-. ...... ...|.+|-| ..|-+-.-+
T Consensus 125 i~~L~~~g~aY~~~~g~vyf~~~~~~~yg~l~~~~~~~~~~~~~~-~~~~~K~~~~DF~Lwk~~~~~e~~w~spWG~grP 203 (461)
T 1li5_A 125 TEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARV-DVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRP 203 (461)
T ss_dssp HHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC-----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEE
T ss_pred HHHHHHCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 999986798897268867335655301155110020001246765-6565678836466538788998766788775589
Q ss_pred ---HHHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHHHHHHHH-CCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf ---889999997522555433367776136-899999999972-266345115311011012211000001223302456
Q gi|254780285|r 336 ---ADLAYFKCKYERGFDNMIYVMGSDHSG-YVKRLEAVAAAV-SEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITL 410 (586)
Q Consensus 336 ---~DiA~~~~k~e~~~d~~iyVv~~~Q~~-h~~~v~~~~~~l-g~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l 410 (586)
...+|...++ .+..--|..-|.|... |-..-.+..+.. |.+.++ .-++.|++.. +|. |||+..||++++
T Consensus 204 gWhiecs~m~~~~-lg~~~Dih~gG~Dl~fpHhene~aq~~a~~g~~~~~-~w~h~g~~~~--~g~--KMSKSlgn~~~~ 277 (461)
T 1li5_A 204 GWHIECSAMNCKQ-LGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVN-YWMHSGMVMV--DRE--KMSKSLGNFFTV 277 (461)
T ss_dssp CSSHHHHHHHHHH-HCSSEEEEECBGGGTTTHHHHHHHHHHHHSSSCCEE-EECCBCCEEE--TTB--CCCGGGTCCCBH
T ss_pred CHHHHHHHHHHHH-HCHHHHCCCCCHHHCCCCCCCHHHHHHHHHCCCCCH-HHHHCCCCCC--CCC--CCCCCCCCEEEH
T ss_conf 7266758999988-270532265754106886435999999875588500-7763582225--876--446446887448
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 77777632112345554200012333447776532024436788888888999987533200246832234223552114
Q gi|254780285|r 411 RHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESE 490 (586)
Q Consensus 411 ~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~ 490 (586)
.|+++..+..++||++|+..-.+.++|+++.+.. .. ++ ..|+.+-++.+..... +
T Consensus 278 ~~~~~~~~~~~~R~~lLs~hYR~pl~fs~e~L~~-A~-~~-------l~rl~~~l~~~~~~~~-------~--------- 332 (461)
T 1li5_A 278 RDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQ-AR-AA-------LERLYTALRGTDKTVA-------P--------- 332 (461)
T ss_dssp HHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHH-HH-HH-------HHHHHHHHTTCCTTSC-------C---------
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH-HH-HH-------HHHHHHHHHHHHHCCC-------C---------
T ss_conf 8864127769999999853678864457046999-99-99-------9999999985552147-------5---------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999842189999999852812799999999998899987068666665435787899999999999999999
Q gi|254780285|r 491 FDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASII 570 (586)
Q Consensus 491 ~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL 570 (586)
....+ + ...+++.-..++.-......++++++..|+.=.. +.. ...+.+..|
T Consensus 333 ~~~~~--~------~~~f~~aL~DDlNTp~Ala~l~~lvk~in~~~~~-------------~~~-------~~~~~~~~L 384 (461)
T 1li5_A 333 AGGEA--F------EARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE-------------DMA-------AANAMASHL 384 (461)
T ss_dssp CSCHH--H------HHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH-------------CHH-------HHHHHHHHH
T ss_pred CCHHH--H------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC-------------CHH-------HHHHHHHHH
T ss_conf 21125--8------9999999876226799999999999998752233-------------589-------999999999
Q ss_pred HHHHHHCCC
Q ss_conf 998731587
Q gi|254780285|r 571 NSGLNIIGV 579 (586)
Q Consensus 571 ~~~L~LLGI 579 (586)
.....+|||
T Consensus 385 ~~~~~vLGl 393 (461)
T 1li5_A 385 RKLSAVLGL 393 (461)
T ss_dssp HHHHTTTTC
T ss_pred HHHHHHCCC
T ss_conf 999996378