HHsearch results for GI: 254780285 and protein with PDBid: 1rqg_A
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.81 E-value=1e-16 Score=134.63 Aligned_cols=351 Identities=16% Similarity=0.172 Sum_probs=198.7
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 1000223443224411777778568-999999998506664102014775314555678987532221024500066011
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVV-GDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiI-Gdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
|.+|.-.=|+||+++|+||+.++.| .|+++|-.|-.|++|.-.---++-|+.+..-+. +.
T Consensus 3 k~~Ittp~Py~NG~lHiGH~~~~~l~aDi~~Ry~rm~G~~v~~~~GtDeHG~~i~~~a~-------~~------------ 63 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL-------KE------------ 63 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHH-------HH------------
T ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEECCCHHHHHHHHH-------HC------------
T ss_conf 49996589898988566743337899999999998079955863866620799999999-------82------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHH
Q ss_conf 02410000127888887576413430237999999978998875455588708752100015887301045799999999
Q gi|254780285|r 201 YPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNL 280 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l 280 (586)
|. . . +++ .+...+.+++.+++|||.||.+..-++- .....+.+++.+|
T Consensus 64 --g~--------------------~----p---~e~-~d~~~~~~~~~~~~lgis~D~f~rT~~~--~~~~~v~~~f~~L 111 (722)
T 1rqg_A 64 --GR--------------------S----P---REI-VDEFHEQIKITFQRAKISFDFFGRTELP--IHYKLSQEFFLKA 111 (722)
T ss_dssp --TC--------------------C----H---HHH-HHHHHHHHHHHHHHHTCCCSEEEETTSH--HHHHHHHHHHHHH
T ss_pred --CC--------------------C----H---HHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHHHH
T ss_conf --99--------------------9----9---999-9999999999999839805589757998--9999999999999
Q ss_pred HHCCCCCCCCCCCCCC---CCC---------------------------------------------CCCCCCCCCEEEE
Q ss_conf 9749851134267555---654---------------------------------------------2000247815651
Q gi|254780285|r 281 ARQGYVYEGILPPPKS---KTT---------------------------------------------QKCDMDRKQLLFR 312 (586)
Q Consensus 281 ~~~g~~~e~~~~~~~~---~~~---------------------------------------------~~~~~~~~~~~~~ 312 (586)
.++|++|++.....-+ ... ........+++++
T Consensus 112 ~~~G~Iy~~~~~~~yc~~~~~~l~d~~v~g~cp~~~~~d~~g~~c~~~~~~~~~~~~~~p~c~r~~~~ve~~~~~qwF~k 191 (722)
T 1rqg_A 112 YENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIK 191 (722)
T ss_dssp HHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEEC
T ss_pred HHCCCCCCCCEEECCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEHHHHHHH
T ss_conf 97799831463545677635261562034524665654455542024577467200368855777974069851334430
Q ss_pred HHHCCC--------------------------CCCCCCC--------------CCCCCHHHHHHHH--HHHHHH---H--
Q ss_conf 011022--------------------------2222210--------------2465213568889--999997---5--
Q gi|254780285|r 313 STMVGD--------------------------DVDRPLL--------------KSDGSYTYFAADL--AYFKCK---Y-- 345 (586)
Q Consensus 313 ~~~~g~--------------------------~~d~vl~--------------rsDGt~~Y~t~Di--A~~~~k---~-- 345 (586)
.+.+.+ -.|..|- ...|-..|.--|- .|.-.. .
T Consensus 192 l~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~l~Dw~ISRq~~WGipiP~~~~~~~~~v~yvw~da~~~y~s~~~~~~~~ 271 (722)
T 1rqg_A 192 MQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKR 271 (722)
T ss_dssp GGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCHHCCCCCCC
T ss_conf 68888888652025799812323110443057633222344777539783357899859998434542100001345311
Q ss_pred -HCC------------CCCCCCCCCCCHHHHHHHHH--HHHHHHCCC---------CCCCEEEECCHHHCCCCCCCCCCC
Q ss_conf -225------------55433367776136899999--999972266---------345115311011012211000001
Q gi|254780285|r 346 -ERG------------FDNMIYVMGSDHSGYVKRLE--AVAAAVSEK---------KAQINVLLCELVRLYRDGMPIKMS 401 (586)
Q Consensus 346 -e~~------------~d~~iyVv~~~Q~~h~~~v~--~~~~~lg~~---------~~~~~~~~~~~v~l~~dg~~~kms 401 (586)
... .-..+.++|-|- ..|..++ +.+...|.. ...-.++..+++ ..+|+ |||
T Consensus 272 ~g~~~~~~~~w~~~~~~~~~~~~~gkDi-~~fh~~~~pa~l~~~G~~~~~~~~~~~~~~~~v~~hg~l--~~~G~--KMS 346 (722)
T 1rqg_A 272 IGKPNEWKKYWLNIDGQTRVIHFIGKDN-IPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYL--TLEGK--KFS 346 (722)
T ss_dssp TTCTTTTHHHHBCSSCCEEEEEEEEGGG-HHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCE--EETTE--ECB
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEECCCC-HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCEE--EECCC--EEE
T ss_conf 4982056676421368842377525763-544203136999873743002223456785289864189--61685--411
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 223302456777776321123455542000-1233344777653202443678888888899998753320024683223
Q gi|254780285|r 402 KRAGDFITLRHVVDEVGSDSVRFMMLWRKN-SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLF 480 (586)
Q Consensus 402 tR~G~~v~l~dll~evg~~aiky~~L~~~~-~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~ 480 (586)
+.+||+|...|++++.|.+++||++++..+ ..+.+|+++........+-+--+--..-|+.+.+.|....
T Consensus 347 KS~GNvIdp~dli~~ygaD~lR~~l~~~~~~~~d~df~~~~~~~~~n~~l~~~l~N~~~r~~~~~~k~~~~--------- 417 (722)
T 1rqg_A 347 TSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDG--------- 417 (722)
T ss_dssp TTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTT---------
T ss_pred CCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------
T ss_conf 03787378899875058278999999708887775302789999988887765547999999745521478---------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 422355211499899999999842189999999852812799999999998899987068
Q gi|254780285|r 481 PRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGR 540 (586)
Q Consensus 481 ~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~ 540 (586)
.++.....++..+.++..+......+.++.++++.+..++.+++++..-|.|++.+.
T Consensus 418 ---~~p~~~~~~~~d~~il~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~~n~yi~~~~ 474 (722)
T 1rqg_A 418 ---VVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQ 474 (722)
T ss_dssp ---BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ---778731000246999999999999999998635899999999999999999999708