HHsearch results for GI: 254780285 and protein with PDBid: 2csx_A
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.83 E-value=9.3e-18 Score=142.02 Aligned_cols=348 Identities=18% Similarity=0.145 Sum_probs=202.9
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 55410002234432244117777785689999999985066641020147753145556789875322210245000660
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPE 198 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e 198 (586)
.-||.+|.-.=|.||+++|+||+|+.++.|.++|.++..||+|.-.--.+|-|..+-.-+. + .
T Consensus 3 ~~~~~~i~~~~py~nG~lHlGHa~~~i~~Di~~R~~r~~G~~V~~v~g~Dd~g~~i~~~a~-------~-~--------- 65 (497)
T 2csx_A 3 LMKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAE-------E-L--------- 65 (497)
T ss_dssp SSCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHH-------H-S---------
T ss_pred CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH-------H-C---------
T ss_conf 8888799689988889710010487999999999998239987564753416699999999-------8-5---------
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHH
Q ss_conf 11024100001278888875764134302379999999789988754555887087521000158873010457999999
Q gi|254780285|r 199 GYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIID 278 (586)
Q Consensus 199 ~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~ 278 (586)
|.. .+++ .+...+.++++++.+||.+|.+.....- .....+..++.
T Consensus 66 ----g~~----~~e~------------------------~~~~~~~~~~~~~~l~i~~d~~~~t~~~--~~~~~~~~~~~ 111 (497)
T 2csx_A 66 ----GIS----PKEL------------------------VDRNAERFKKLWEFLKIEYTKFIRTTDP--YHVKFVQKVFE 111 (497)
T ss_dssp ----SSC----HHHH------------------------HHHHHHHHHHHHHHTTCCCSEEEETTSH--HHHHHHHHHHH
T ss_pred ----CCC----HHHH------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHH
T ss_conf ----999----9999------------------------9999999999999859888767625887--87655889999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCC--------------------CCCEEEEHHHCCC--------------------
Q ss_conf 999749851134267555654200024--------------------7815651011022--------------------
Q gi|254780285|r 279 NLARQGYVYEGILPPPKSKTTQKCDMD--------------------RKQLLFRSTMVGD-------------------- 318 (586)
Q Consensus 279 ~l~~~g~~~e~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~-------------------- 318 (586)
++.++|++|+.......+........+ ....+++.....+
T Consensus 112 ~l~~~g~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 191 (497)
T 2csx_A 112 ECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRN 191 (497)
T ss_dssp HHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHH
T ss_pred HHHHCCCEEECCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 98762660001025223424343356023203565554444521367875032313208999999984997648588999
Q ss_pred ---------CCC-------------CCCCCCCCCHHHHHHHHHHHHHHH-----HCCCCCCCCCCCCCHH-HHHHHHHHH
Q ss_conf ---------222-------------221024652135688899999975-----2255543336777613-689999999
Q gi|254780285|r 319 ---------DVD-------------RPLLKSDGSYTYFAADLAYFKCKY-----ERGFDNMIYVMGSDHS-GYVKRLEAV 370 (586)
Q Consensus 319 ---------~~d-------------~vl~rsDGt~~Y~t~DiA~~~~k~-----e~~~d~~iyVv~~~Q~-~h~~~v~~~ 370 (586)
..+ .++-..+|-..|..-|.+.+.... +..+.--+++.|.||. .|+--..+.
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~~wgi~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~p~di~~~G~D~~~~h~~~~~a~ 271 (497)
T 2csx_A 192 EIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAF 271 (497)
T ss_dssp HHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 99999970364357775422468886777789962020113332211120011244788722306765300579999999
Q ss_pred HHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCC
Q ss_conf 99722663451153110110122110000012233024567777763211234555420-00123334477765320244
Q gi|254780285|r 371 AAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR-KNSELLDFDFCKVKEQSKEN 449 (586)
Q Consensus 371 ~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~-~~~~~~~Fd~d~~l~~~~~n 449 (586)
+..+|...++ .+++.+++.+ +|+ |||+..||+|..+|++++.|.+++||.+++. ....+..|+++.........
T Consensus 272 ~~a~~~~~p~-~~~~~g~~~~--~G~--KmSKS~gn~i~~~~~l~~~g~D~lR~~l~~~~~~~~d~~f~~~~~~~~~~~~ 346 (497)
T 2csx_A 272 LMSLGYELPK-KVFAHGWWTV--EGK--KMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGE 346 (497)
T ss_dssp HHHHTCCCCS-CEEEECCEES--SSS--BCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHT
T ss_pred HHHCCCCCCC-EEEECCCEEE--CCC--CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9984999998-8985584863--685--2335688657999998732985889899860887776554799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 36788888888999987533200246832234223552114998999999998421899999998528127999999999
Q gi|254780285|r 450 PVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLA 529 (586)
Q Consensus 450 t~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La 529 (586)
-..-+.....|+.....|....... ... ...+...+......+.++.+++..+..+..+++++
T Consensus 347 l~~~~~~~~~~~~~~~~k~~~~~~~------------~~~-----~~~~~~~~~~~~~~~~~~~d~~~f~~Al~~i~~~~ 409 (497)
T 2csx_A 347 LANEIGNLYSRVVNMAHKFLGGEVS------------GAR-----DEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT 409 (497)
T ss_dssp CCCCCHHHHHHHHHHHHHHSTTCBC------------CCC-----CTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHH------------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999888876444310233321001------------234-----67899999988878999887468999999999999
Q ss_pred HHHHHHHHHC
Q ss_conf 9889998706
Q gi|254780285|r 530 SVFHGHWSHG 539 (586)
Q Consensus 530 ~~Fn~fY~~~ 539 (586)
...|.|.+..
T Consensus 410 ~~~N~yi~~~ 419 (497)
T 2csx_A 410 SYLNKYVDEK 419 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
T ss_conf 9999999967