HHsearch results for GI: 254780285 and protein with PDBid: 2x1l_A
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.85 E-value=5e-18 Score=143.90 Aligned_cols=351 Identities=18% Similarity=0.208 Sum_probs=203.4
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
|..++..|.-.=|+|++++|+||+|+.++.|.++|-++..||+|.=.--.++.|+.+-.-+ .+
T Consensus 9 ~~~~~~~i~~~~Py~nG~lHiGHa~~~~~~Dii~R~~r~~G~~v~~v~G~D~hG~~i~~~A-------~k---------- 71 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETA-------AK---------- 71 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHH-------HH----------
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHH-------HH----------
T ss_conf 9999989958998888971004027799999999999823997142581173479999999-------98----------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHH
Q ss_conf 01102410000127888887576413430237999999978998875455588708752100015887301045799999
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDII 277 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i 277 (586)
+ |. . . +++ .+...+.+++++++|||.||.+..-++- .....+.+++
T Consensus 72 ~----g~--------------------~----~---~e~-~~~~~~~~~~~~~~l~i~~D~~~~T~~~--~~~~~~~~~~ 117 (524)
T 2x1l_A 72 E----GI--------------------P----A---AEL-ARRNSDVFQRLQEKLNISFDRFIRTSDA--DHYEASKAIW 117 (524)
T ss_dssp H----TS--------------------C----H---HHH-HHHHHHHHHHHHHHTTCCCSEEEETTSH--HHHHHHHHHH
T ss_pred C----CC--------------------C----H---HHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHHHHHHH
T ss_conf 4----99--------------------9----9---999-9999999999999969947888116988--9999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCC------------------------CCCCCCCCCEEEEHHHCCCC--------------
Q ss_conf 9999749851134267555654------------------------20002478156510110222--------------
Q gi|254780285|r 278 DNLARQGYVYEGILPPPKSKTT------------------------QKCDMDRKQLLFRSTMVGDD-------------- 319 (586)
Q Consensus 278 ~~l~~~g~~~e~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~g~~-------------- 319 (586)
.+|.++|++|++.....-+... .....+....+++.+...+.
T Consensus 118 ~~l~~~G~iy~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p 197 (524)
T 2x1l_A 118 KRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGP 197 (524)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEES
T ss_pred HHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 88986494897054145532453352000114568851000336986656405642013077799999999848654585
Q ss_pred ---------------CCCCCCC-----------CCCCHHHHHHHHH--H---HHHHH------HCCCCCCCCCCCCCHHH
Q ss_conf ---------------2222102-----------4652135688899--9---99975------22555433367776136
Q gi|254780285|r 320 ---------------VDRPLLK-----------SDGSYTYFAADLA--Y---FKCKY------ERGFDNMIYVMGSDHSG 362 (586)
Q Consensus 320 ---------------~d~vl~r-----------sDGt~~Y~t~DiA--~---~~~k~------e~~~d~~iyVv~~~Q~~ 362 (586)
.+..+-| -++..+|.--|-. + ..|.. +...-..+.+.|.|+..
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~v~~~Wfds~~~~~~~~~~~~~~~~~~~~~~p~di~~~G~D~~~ 277 (524)
T 2x1l_A 198 DARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIR 277 (524)
T ss_dssp HHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCHHHHHCCCCEEEEECCEEHH
T ss_conf 66665468876554644455677788899999975633333101002311336888657576772488507883123007
Q ss_pred -HHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHH
Q ss_conf -89999999997226634511531101101221100000122330245677777632112345554200-0123334477
Q gi|254780285|r 363 -YVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK-NSELLDFDFC 440 (586)
Q Consensus 363 -h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~-~~~~~~Fd~d 440 (586)
|.-..-+.+...|.+.++ .++..|++.+ +|+ |||+..||+|.++|++++.|.+++||++++.. ...+..|+++
T Consensus 278 fh~~~~~a~~~~~~~~~~~-~i~~~g~l~~--~G~--KMSKSlGN~i~~~~~l~~ygaD~lR~~l~~~~~~~~d~~f~~~ 352 (524)
T 2x1l_A 278 FHTVYWPAFLMSAGLPLPK-RIFAHGWLLN--RGE--KMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNED 352 (524)
T ss_dssp HHHTHHHHHHHHHTCCCCS-CEEEECCEEE--CSC--SEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHH
T ss_pred HHHHHHHHHHHHCCCCCCC-EEEECEEEEC--CCC--EECCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 9999999999847999885-8996418963--885--7137799547869999863943999999870876777656689
Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 765320---24436788888888999987533200246832234223552114998999999998421899999998528
Q gi|254780285|r 441 KVKEQS---KENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQE 517 (586)
Q Consensus 441 ~~l~~~---~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~ 517 (586)
...... --|.. ....-|+.....+.... ........++....++..+......+..+...+.
T Consensus 353 ~~~~~~n~~l~~~~---~n~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~d~~~ 417 (524)
T 2x1l_A 353 AIIGRVNADLANEL---GNLAQRSLSMVAKNLGA------------AVPDPGEFTDEDTALLAAADALLERVREHFDVPA 417 (524)
T ss_dssp HHHHHHHHCCCCCC---HHHHHHHHHHHHHHSTT------------BCCCCCCCCHHHHHHHHHHHTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999---99998888876521466------------5565200134565665556777777666677678
Q ss_pred CHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1279999999999889998706
Q gi|254780285|r 518 PYKLAFYLYDLASVFHGHWSHG 539 (586)
Q Consensus 518 P~~l~~Yl~~La~~Fn~fY~~~ 539 (586)
++..++.+++++...|.|++..
T Consensus 418 ~~~Al~~i~~~i~~~N~Yl~~~ 439 (524)
T 2x1l_A 418 MHLALEAIWSVLGAANRYFSAQ 439 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999966