HHsearch results for GI: 254780285 and protein with PDBid: 2x1l_A

>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.85  E-value=5e-18  Score=143.90  Aligned_cols=351  Identities=18%  Similarity=0.208  Sum_probs=203.4

Q ss_pred             CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r  118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP  197 (586)
Q Consensus       118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~  197 (586)
                      |..++..|.-.=|+|++++|+||+|+.++.|.++|-++..||+|.=.--.++.|+.+-.-+       .+          
T Consensus         9 ~~~~~~~i~~~~Py~nG~lHiGHa~~~~~~Dii~R~~r~~G~~v~~v~G~D~hG~~i~~~A-------~k----------   71 (524)
T 2x1l_A            9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETA-------AK----------   71 (524)
T ss_dssp             --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHH-------HH----------
T ss_pred             CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHH-------HH----------
T ss_conf             9999989958998888971004027799999999999823997142581173479999999-------98----------


Q ss_pred             HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHH
Q ss_conf             01102410000127888887576413430237999999978998875455588708752100015887301045799999
Q gi|254780285|r  198 EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDII  277 (586)
Q Consensus       198 e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i  277 (586)
                      +    |.                    .    .   +++ .+...+.+++++++|||.||.+..-++-  .....+.+++
T Consensus        72 ~----g~--------------------~----~---~e~-~~~~~~~~~~~~~~l~i~~D~~~~T~~~--~~~~~~~~~~  117 (524)
T 2x1l_A           72 E----GI--------------------P----A---AEL-ARRNSDVFQRLQEKLNISFDRFIRTSDA--DHYEASKAIW  117 (524)
T ss_dssp             H----TS--------------------C----H---HHH-HHHHHHHHHHHHHHTTCCCSEEEETTSH--HHHHHHHHHH
T ss_pred             C----CC--------------------C----H---HHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHHHHHHH
T ss_conf             4----99--------------------9----9---999-9999999999999969947888116988--9999999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCC------------------------CCCCCCCCCEEEEHHHCCCC--------------
Q ss_conf             9999749851134267555654------------------------20002478156510110222--------------
Q gi|254780285|r  278 DNLARQGYVYEGILPPPKSKTT------------------------QKCDMDRKQLLFRSTMVGDD--------------  319 (586)
Q Consensus       278 ~~l~~~g~~~e~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~g~~--------------  319 (586)
                      .+|.++|++|++.....-+...                        .....+....+++.+...+.              
T Consensus       118 ~~l~~~G~iy~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p  197 (524)
T 2x1l_A          118 KRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGP  197 (524)
T ss_dssp             HHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEES
T ss_pred             HHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             88986494897054145532453352000114568851000336986656405642013077799999999848654585


Q ss_pred             ---------------CCCCCCC-----------CCCCHHHHHHHHH--H---HHHHH------HCCCCCCCCCCCCCHHH
Q ss_conf             ---------------2222102-----------4652135688899--9---99975------22555433367776136
Q gi|254780285|r  320 ---------------VDRPLLK-----------SDGSYTYFAADLA--Y---FKCKY------ERGFDNMIYVMGSDHSG  362 (586)
Q Consensus       320 ---------------~d~vl~r-----------sDGt~~Y~t~DiA--~---~~~k~------e~~~d~~iyVv~~~Q~~  362 (586)
                                     .+..+-|           -++..+|.--|-.  +   ..|..      +...-..+.+.|.|+..
T Consensus       198 ~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~v~~~Wfds~~~~~~~~~~~~~~~~~~~~~~p~di~~~G~D~~~  277 (524)
T 2x1l_A          198 DARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIR  277 (524)
T ss_dssp             HHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCHHHHHCCCCEEEEECCEEHH
T ss_conf             66665468876554644455677788899999975633333101002311336888657576772488507883123007


Q ss_pred             -HHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHH
Q ss_conf             -89999999997226634511531101101221100000122330245677777632112345554200-0123334477
Q gi|254780285|r  363 -YVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK-NSELLDFDFC  440 (586)
Q Consensus       363 -h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~-~~~~~~Fd~d  440 (586)
                       |.-..-+.+...|.+.++ .++..|++.+  +|+  |||+..||+|.++|++++.|.+++||++++.. ...+..|+++
T Consensus       278 fh~~~~~a~~~~~~~~~~~-~i~~~g~l~~--~G~--KMSKSlGN~i~~~~~l~~ygaD~lR~~l~~~~~~~~d~~f~~~  352 (524)
T 2x1l_A          278 FHTVYWPAFLMSAGLPLPK-RIFAHGWLLN--RGE--KMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNED  352 (524)
T ss_dssp             HHHTHHHHHHHHHTCCCCS-CEEEECCEEE--CSC--SEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHH
T ss_pred             HHHHHHHHHHHHCCCCCCC-EEEECEEEEC--CCC--EECCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf             9999999999847999885-8996418963--885--7137799547869999863943999999870876777656689


Q ss_pred             HHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             765320---24436788888888999987533200246832234223552114998999999998421899999998528
Q gi|254780285|r  441 KVKEQS---KENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQE  517 (586)
Q Consensus       441 ~~l~~~---~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~  517 (586)
                      ......   --|..   ....-|+.....+....            ........++....++..+......+..+...+.
T Consensus       353 ~~~~~~n~~l~~~~---~n~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~d~~~  417 (524)
T 2x1l_A          353 AIIGRVNADLANEL---GNLAQRSLSMVAKNLGA------------AVPDPGEFTDEDTALLAAADALLERVREHFDVPA  417 (524)
T ss_dssp             HHHHHHHHCCCCCC---HHHHHHHHHHHHHHSTT------------BCCCCCCCCHHHHHHHHHHHTHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999---99998888876521466------------5565200134565665556777777666677678


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             1279999999999889998706
Q gi|254780285|r  518 PYKLAFYLYDLASVFHGHWSHG  539 (586)
Q Consensus       518 P~~l~~Yl~~La~~Fn~fY~~~  539 (586)
                      ++..++.+++++...|.|++..
T Consensus       418 ~~~Al~~i~~~i~~~N~Yl~~~  439 (524)
T 2x1l_A          418 MHLALEAIWSVLGAANRYFSAQ  439 (524)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC
T ss_conf             9999999999999999999966