HHsearch results for GI: 254780285 and protein with PDBid: 3al0_C

>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.44  E-value=2.8e-12  Score=103.59  Aligned_cols=126  Identities=19%  Similarity=0.210  Sum_probs=82.7

Q ss_pred             CCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf             78156510110222222210246521356888999999752255543336777613689999999997226634511531
Q gi|254780285|r  306 RKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLL  385 (586)
Q Consensus       306 ~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~  385 (586)
                      .|.+.+.+...+   |.||+|+||++||   ++|...+-...+..++|=  |.||-....+-..+.+.||+..+.+.|+.
T Consensus       279 ~G~i~~~~~~l~---D~Vi~R~Dg~ptY---~~a~vvdD~~~~ithviR--g~d~~~~t~~~~~l~~alg~~~P~faHlP  350 (592)
T 3al0_C          279 KGYMEFDNSTLE---DFIIMKSNGFPTY---NFAVVVDDHLMRISHVFR--GEDHLSNTPKQLMIYEAFGWEAPVFMHIP  350 (592)
T ss_dssp             TCSEECCSSSSC---CEEEECTTSCCCH---HHHHHHHHHHTTCSBCCE--EGGGGGGHHHHHHHHTTTTCCCCBCCEEC
T ss_pred             CCEEEECCCCCC---CEEEEECCCCCCE---EEEEEECCCCCCCCEEEC--CCCCCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf             111553644479---8189952898110---011245066578874406--52021470999999998277997116611


Q ss_pred             CCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH-----------HHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             1011012211000001223302456777776-------------321-----------1234555420001233344777
Q gi|254780285|r  386 CELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS-----------DSVRFMMLWRKNSELLDFDFCK  441 (586)
Q Consensus       386 ~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~-----------~aiky~~L~~~~~~~~~Fd~d~  441 (586)
                      .  + +..||+  |||+|.|.. .+.+.-++             +|-           ..+.-|+|+.=..+.-.||+++
T Consensus       351 L--I-l~~dg~--KLSKR~ga~-sV~~yre~GylPeAllNYLalLGWS~~~~EifsLdELIe~FdL~~IsKS~A~FD~~K  424 (592)
T 3al0_C          351 L--I-LGSDRT--PLSKRHGAT-SVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFDPKDISNKGVIFDYQK  424 (592)
T ss_dssp             C--C-BCTTSS--BCCTTTCSS-BHHHHHHTTCCHHHHHHHHTTTTBCCCSCSCCCTTTTGGGCCTTSBCSSCCBCCHHH
T ss_pred             C--E-ECCCCC--CCCCCCCCC-CHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHH
T ss_conf             0--2-368987--555567975-278998779994899999998368986311331999998369120267752041999


Q ss_pred             HHHH
Q ss_conf             6532
Q gi|254780285|r  442 VKEQ  445 (586)
Q Consensus       442 ~l~~  445 (586)
                      +...
T Consensus       425 L~wi  428 (592)
T 3al0_C          425 LEWV  428 (592)
T ss_dssp             HHHH
T ss_pred             HHHH
T ss_conf             9999