HHsearch results for GI: 254780285 and protein with PDBid: 3al0_C
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.44 E-value=2.8e-12 Score=103.59 Aligned_cols=126 Identities=19% Similarity=0.210 Sum_probs=82.7
Q ss_pred CCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 78156510110222222210246521356888999999752255543336777613689999999997226634511531
Q gi|254780285|r 306 RKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLL 385 (586)
Q Consensus 306 ~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~ 385 (586)
.|.+.+.+...+ |.||+|+||++|| ++|...+-...+..++|= |.||-....+-..+.+.||+..+.+.|+.
T Consensus 279 ~G~i~~~~~~l~---D~Vi~R~Dg~ptY---~~a~vvdD~~~~ithviR--g~d~~~~t~~~~~l~~alg~~~P~faHlP 350 (592)
T 3al0_C 279 KGYMEFDNSTLE---DFIIMKSNGFPTY---NFAVVVDDHLMRISHVFR--GEDHLSNTPKQLMIYEAFGWEAPVFMHIP 350 (592)
T ss_dssp TCSEECCSSSSC---CEEEECTTSCCCH---HHHHHHHHHHTTCSBCCE--EGGGGGGHHHHHHHHTTTTCCCCBCCEEC
T ss_pred CCEEEECCCCCC---CEEEEECCCCCCE---EEEEEECCCCCCCCEEEC--CCCCCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 111553644479---8189952898110---011245066578874406--52021470999999998277997116611
Q ss_pred CCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH-----------HHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 1011012211000001223302456777776-------------321-----------1234555420001233344777
Q gi|254780285|r 386 CELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS-----------DSVRFMMLWRKNSELLDFDFCK 441 (586)
Q Consensus 386 ~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~-----------~aiky~~L~~~~~~~~~Fd~d~ 441 (586)
. + +..||+ |||+|.|.. .+.+.-++ +|- ..+.-|+|+.=..+.-.||+++
T Consensus 351 L--I-l~~dg~--KLSKR~ga~-sV~~yre~GylPeAllNYLalLGWS~~~~EifsLdELIe~FdL~~IsKS~A~FD~~K 424 (592)
T 3al0_C 351 L--I-LGSDRT--PLSKRHGAT-SVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFDPKDISNKGVIFDYQK 424 (592)
T ss_dssp C--C-BCTTSS--BCCTTTCSS-BHHHHHHTTCCHHHHHHHHTTTTBCCCSCSCCCTTTTGGGCCTTSBCSSCCBCCHHH
T ss_pred C--E-ECCCCC--CCCCCCCCC-CHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHH
T ss_conf 0--2-368987--555567975-278998779994899999998368986311331999998369120267752041999
Q ss_pred HHHH
Q ss_conf 6532
Q gi|254780285|r 442 VKEQ 445 (586)
Q Consensus 442 ~l~~ 445 (586)
+...
T Consensus 425 L~wi 428 (592)
T 3al0_C 425 LEWV 428 (592)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999