PSIBLAST alignment of GI: 254780285 and protein with PDB id: 1iq0
gi|17942832|pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase Length = 592
Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats.
Identities = 110/623 (17%), Positives = 206/623 (33%), Gaps = 76/623 (12%)
Query: 7 FSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAE 66
L+ + + ++ V R+ + R G L++ L P IA+
Sbjct: 2 LRRALEEAIAQALKEMGVPV----RLKVARAPKDKPGDYGVPL-FALAKELRKPPQAIAQ 56
Query: 67 LIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIE 126
+ R+ + V+ G G++N L L L + + R + V +E
Sbjct: 57 ELKDRLPLPEFVEEAVPVG-GYLNFRLRTEAL---LREALRPKAPFPR----RPGVVLVE 108
Query: 127 FVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQ 186
S NP +HVGH R +GD +A ++A++G EV YI+D G Q ++
Sbjct: 109 HTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGL 168
Query: 187 QALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIR 246
D G + E E+L+ E L V ++
Sbjct: 169 TWDGKEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGEL----REEVNRILLAQM 224
Query: 247 DDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGY---VYEGILPPPKSKTTQKCD 303
+ ALN ++D+ + E D R ++ + L + + EG
Sbjct: 225 ATMHALNARYDLLVWESDIVRA--GLLQKALALLEQSPHVFRPREGKYAGALVMDASPVI 282
Query: 304 MDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGY 363
+ F + YE + + + Y
Sbjct: 283 PGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAY 342
Query: 364 VKRLEAVAAAVSEKKAQIN----------------------------------------- 382
+ E V +++
Sbjct: 343 TPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGRKGLA 402
Query: 383 VLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKV 442
V + E++ + ++ D V ++RF M+ + + +DF + +
Sbjct: 403 VSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEA 462
Query: 443 KEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHL 502
+ + YVQYA+AR SI R+A + P S+ E L + L
Sbjct: 463 LSF-EGDTGPYVQYAHARAHSILRKAGEWG------------APDLSQATPYERALALDL 509
Query: 503 AEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQL 562
++ + A + P+ LA YL DLA+ ++ +++ V L +RL L
Sbjct: 510 LDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLSL 569
Query: 563 VHAVASIINSGLNIIGVESPNEM 585
V ++ + +GL+++G+ +P M
Sbjct: 570 VQSLQRTLATGLDLLGIPAPEVM 592