RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (586 letters) >3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni} Length = 464 Score = 387 bits (996), Expect = e-108 Identities = 148/494 (29%), Positives = 257/494 (52%), Gaps = 41/494 (8%) Query: 93 LSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLAS 152 LS ++L ++ + + + ++ + K +E+VSANPTGP+H+GH R AV GDTL Sbjct: 3 LSKTFLNELANQALTNPNDFTKGE-KKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTR 61 Query: 153 LMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKE 212 L GY+ EYY+NDAG QI L LS+ ++++ + + + PE YY G Y+ + KE Sbjct: 62 LARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKE 121 Query: 213 LADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSP 272 +K+ E F E+ +P + D++ M+ +I+ +L+ I+ D ++SE ++ Sbjct: 122 AFEKFGKE---FFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD----A 174 Query: 273 IRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYT 332 + +++L +YE ++ S+ GD+ DR +++ DG T Sbjct: 175 LNATLESLKEHKGIYE----------------QEGKIWLASSQKGDEKDRVIIREDGRGT 218 Query: 333 YFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLY 392 Y AAD+ Y K K RG+ I + G+DH GY+ R++A + + ++L ++V L Sbjct: 219 YLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLL 278 Query: 393 RDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVF 452 +DG P KMSKRAG+FI + VVDE+GSD++R++ L +K L+FD ++++ NPV+ Sbjct: 279 KDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVY 338 Query: 453 YVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENA 512 Y+ YA+AR +F +A D+ + + L+ V+ +A Sbjct: 339 YINYAHARIHQVFAKAGKKIDDVMKADL--------QSLNQDGVNLLFEALNLKAVLNDA 390 Query: 513 TIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINS 572 A+ K+ YL +LA+ FH ++ + V + N L+L VA I + Sbjct: 391 FEARALQKIPDYLKNLAANFHKFYNEN------KVVGSANEND---LLKLFSLVALSIKT 441 Query: 573 GLNIIGVESPNEMS 586 +++G+E+ N+M Sbjct: 442 AFSLMGIEAKNKME 455 >1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A* Length = 607 Score = 370 bits (952), Expect = e-103 Identities = 127/611 (20%), Positives = 226/611 (36%), Gaps = 74/611 (12%) Query: 11 LKNYLKEIDCKIK-VEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIV 69 ++NY+ + KI V+ ++ +E G L + G +P +A Sbjct: 35 MRNYISQELSKISGVDSSLIFPA-LEWTNTMERGDLLIPIPRLRI--KGANPKDLAVQWA 91 Query: 70 ARIKIDPDVDSVFIAGKGFINLYLSPSYLRK-ILSSIVVSGIEYGRNLIGKGTKVNIEFV 128 + ++ V G FI + +P +L K ++ I+ +YG + + KV IEF Sbjct: 92 EKFPCGDFLEKVEANG-PFIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFS 150 Query: 129 SANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQA 188 S N P H GH R ++G LA+L G+EV R Y+ D G Q LA+ + Sbjct: 151 SPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEE 210 Query: 189 LYNNDSD---------LPEGYYPGVYLKHVGKELADKYSSELLNF--PEEKWLPIVKDYS 237 D + + + + K +E+ L I K + Sbjct: 211 ALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRF- 269 Query: 238 VQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSK 297 + ++ D LNI++D++ E + + ID +G +E Sbjct: 270 REFSIEKYIDTYARLNIKYDVYSGESQVSKES---MLKAIDLFKEKGLTHE--------- 317 Query: 298 TTQKCDMDRKQLLFRSTMVGDDVDRPLL-KSDGSYTYFAADLAYFKCKYER-GFDNMIYV 355 D+ +L T + + ++ KSDG+ Y D+ +YE+ FD MIYV Sbjct: 318 -------DKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYV 370 Query: 356 MGSDHSGYVKRLEAVAAAVSEKKAQI------------------NVLLCELVRLYRDGMP 397 + S + + + + + A+ V L ++ ++ M Sbjct: 371 IASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMVQGMSTRKGTVVFLDNILEETKEKMH 430 Query: 398 IKMSKRAGDFITLRH---VVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYV 454 M K + + H V D VG +V + K +F + ++ + Y+ Sbjct: 431 EVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTG-PYL 489 Query: 455 QYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATI 514 QYA++R RS+ R A I + + + + LI L +YP V+ NA Sbjct: 490 QYAHSRLRSVERNASGITQEKWIN------ADFSLLKEPAAKLLIRLLGQYPDVLRNAIK 543 Query: 515 AQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGL 574 EP + YL+ L + V +L RL L A ++ +G+ Sbjct: 544 THEPTTVVTYLFKLTHQVSSCYDVLW-------VAGQTEELATARLALYGAARQVLYNGM 596 Query: 575 NIIGVESPNEM 585 ++G+ M Sbjct: 597 RLLGLTPVERM 607 >1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 Length = 592 Score = 336 bits (861), Expect = 1e-92 Identities = 126/627 (20%), Positives = 226/627 (36%), Gaps = 88/627 (14%) Query: 11 LKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVA 70 L+ L+E + E + R+ + R G L++ L P IA+ + Sbjct: 2 LRRALEEAIAQALKEMGVPVRLKVARAPKDKPGDYGVPL-FALAKELRKPPQAIAQELKD 60 Query: 71 RIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSA 130 R+ + V+ G G++N L L L + + R + V +E S Sbjct: 61 RLPLPEFVEEAVPVG-GYLNFRLRTEAL---LREALRPKAPFPR----RPGVVLVEHTSV 112 Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALY 190 NP +HVGH R +GD +A ++A++G EV YI+D G Q ++ Sbjct: 113 NPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDG 172 Query: 191 NNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLK 250 D G + E E+L+ E L V ++ + Sbjct: 173 KEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGEL----REEVNRILLAQMATMH 228 Query: 251 ALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLL 310 ALN ++D+ + E D R ++ + L + +V+ Sbjct: 229 ALNARYDLLVWESDIVRAGL--LQKALALLEQSPHVFRPREGKYAGALVMDASPV----- 281 Query: 311 FRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCK-----------YERGFDNMIYVMGSD 359 +D LL+S+G+ TY+A D+A+ K YE + + + Sbjct: 282 ---IPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPE 338 Query: 360 HSGYVKRLEAVAAAVSEKKAQINVL----------------LCELVRLYRDGMPIKMSKR 403 Y + E V +++ L L +MS R Sbjct: 339 GEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGR 398 Query: 404 AGDFITLRHVVDE-------------------------VGSDSVRFMMLWRKNSELLDFD 438 G +++ V++E V ++RF M+ + + +DF Sbjct: 399 KGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFR 458 Query: 439 FCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQL 498 + + + YVQYA+AR SI R+A + P S+ E L Sbjct: 459 YQEALSFEGDTG-PYVQYAHARAHSILRKAGEWG------------APDLSQATPYERAL 505 Query: 499 IVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMM 558 + L ++ + A + P+ LA YL DLA+ ++ +++ V L + Sbjct: 506 ALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLREL 565 Query: 559 RLQLVHAVASIINSGLNIIGVESPNEM 585 RL LV ++ + +GL+++G+ +P M Sbjct: 566 RLSLVQSLQRTLATGLDLLGIPAPEVM 592 >2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A Length = 629 Score = 321 bits (824), Expect = 2e-88 Identities = 134/652 (20%), Positives = 259/652 (39%), Gaps = 92/652 (14%) Query: 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLD 60 M + R++ +KEI + + E I ++ D G T A L++ L Sbjct: 3 MEIRESVKERIEEIIKEIAPQWEGE------IELKETPDPKLGDFGTPIAFKLAKLLKRP 56 Query: 61 PLTIAELIVARIKID-PDVDSVFIAGKGFINLYLSPSYL-RKILSSIVVSGIEYGRNLIG 118 P+ IAE IV ++K++ P+ A G+IN+++ + R +++ I+ G +G + IG Sbjct: 57 PIEIAEKIVEKLKLNLPEGIKDVKAVNGYINVFIDYPHFARILINDILAKGDRFGSSEIG 116 Query: 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLA 178 KG KV +E S NPT P+H+GH R A++GD +A ++ F GYEV + YI+D G Q + Sbjct: 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVY 176 Query: 179 LSVFWRYQQALYNNDSDLPEGYYPG---------VYLKHVGKELADKYSSELLNFPEEKW 229 + R ++ ++L E +Y++ + + + +K Sbjct: 177 WG-YLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKL 235 Query: 230 LPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEG 289 A + + + + + ++ L++ Y Sbjct: 236 ESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIP 295 Query: 290 ILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYER-- 347 + L + + L +SDG+ TY D+AY K+ + Sbjct: 296 SDGKYR--------GAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKID 347 Query: 348 ---------------------------GFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQ 380 + +I V+G++ ++ + + A Sbjct: 348 VDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQLAIKYALQLLGFEDAA 407 Query: 381 IN-----------------VLLCELVRLYRDGMPIKMSKRAGDFI----------TLRHV 413 N V D + + KRA + I V Sbjct: 408 ANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEV 467 Query: 414 VDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFP 473 ++VG ++R+ ++ + + F + V E+ Y+QYA+ARC SI R+A++ Sbjct: 468 AEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGES-APYIQYAHARCSSILRKAEEEGI 526 Query: 474 DLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFH 533 +D + +N ++ E +L++ L+++PR++E A +P+ +A++ +LAS+F+ Sbjct: 527 KVDPETLFKNA--DFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFN 584 Query: 534 GHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 + V + RL LV AV ++ + L ++G+E+P M Sbjct: 585 KFYMDHP-------VLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAPERM 629 >1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1 Length = 523 Score = 129 bits (325), Expect = 1e-30 Identities = 45/322 (13%), Positives = 96/322 (29%), Gaps = 19/322 (5%) Query: 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTL 177 G+ K +E P+G +HVG+ R + + GYEV + +D Sbjct: 17 GEKEKYVVES-GITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKV- 74 Query: 178 ALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYS 237 +V ++ L S++P+ + ++ +L + + + Y Sbjct: 75 PRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLY--ASELYK 132 Query: 238 VQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSK 297 + IR + + +I + + P P + + P + Sbjct: 133 RGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPEN----------WWPAMVYCPEHRR 182 Query: 298 TTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMG 357 + + D + G + + + + F G Sbjct: 183 EAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDW-----PMRWSHFGVDFEPAG 237 Query: 358 SDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEV 417 DH + + E + L + G KMS G+ I L + + + Sbjct: 238 KDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVL 297 Query: 418 GSDSVRFMMLWRKNSELLDFDF 439 VRF+ + ++ + D Sbjct: 298 EPGLVRFIYARHRPNKEIKIDL 319 >3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumoniae MGH 78578, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Klebsiella pneumoniae subsp} Length = 109 Score = 77.3 bits (190), Expect = 9e-15 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 6/106 (5%) Query: 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLD 60 M + A S ++ L E + + G N M +++ LG+ Sbjct: 4 MNIQALLSEKVSQALIAAGAPADCE------PQVRQSAKVQFGDYQANGVMAVAKKLGMA 57 Query: 61 PLTIAELIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIV 106 P +AE +++ + ++ + V IAG GFIN++L P++L ++ + Sbjct: 58 PRQLAEQVLSHLDLNGIANKVEIAGPGFINIFLDPAFLADNVNRAL 103 >3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis} Length = 414 Score = 62.9 bits (152), Expect = 2e-10 Identities = 42/315 (13%), Positives = 84/315 (26%), Gaps = 40/315 (12%) Query: 132 PT--GPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQAL 189 T H+GH + D + L +G+ V + D + A ++ Sbjct: 47 ITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRT-- 104 Query: 190 YNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDY---SVQAMMKIIR 246 L D+ + + L ++ + + + + Sbjct: 105 -----------------------LGDRETQLFRE--DMAALRVLPPHDYVAATDAIAEVV 139 Query: 247 DDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDR 306 + ++ L +I ED + GY + +L + + Sbjct: 140 EMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGK 199 Query: 307 KQLLFRSTMVGDDVDRPLLKS---DGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGY 363 L + P S G + A + G D I GSD Sbjct: 200 SDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLD--IQGGGSDLIFP 257 Query: 364 VKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-VGSDSV 422 A A + + + DG MSK G+ + + + + V ++ Sbjct: 258 HHEYSAAHAESVTGERRFARHYVHTGMIGWDGHK--MSKSRGNLVLVSQLRAQGVDPSAI 315 Query: 423 RFMMLWRKNSELLDF 437 R + E + Sbjct: 316 RLGLFSGHYREDRFW 330 >1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B Length = 461 Score = 58.2 bits (140), Expect = 5e-09 Identities = 65/418 (15%), Positives = 131/418 (31%), Gaps = 73/418 (17%) Query: 132 PT--GPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQAL 189 T H+GH R V D +A + F GY++ I D +I ++A Sbjct: 30 ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKII----------KRAN 79 Query: 190 YNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDL 249 N +S + D+ I + + + I+R D+ Sbjct: 80 ENGESF---------------VAMVDRM--------------IAEMHKDFDALNILRPDM 110 Query: 250 K---ALNIQHDIFISEDDFHRGD-----PSPIRDIIDNLARQGYVYEGILPPPKSKTTQK 301 + +I I ++E +G + + G + L ++ Sbjct: 111 EPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVD 170 Query: 302 CDMDRKQ----LLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMG 357 D++ +L++ + G+ + + + CK N + G Sbjct: 171 VVDDKRNPMDFVLWKMSKEGEP--SWPSPWGAGRPGWHIECSAMNCKQ---LGNHFDIHG 225 Query: 358 SDHSGYVKRLEAVAAAVSEKKAQINV-LLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE 416 E A + V + D KMSK G+F T+R V+ Sbjct: 226 GGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDR--EKMSKSLGNFFTVRDVLKY 283 Query: 417 VGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLD 476 +++VR+ ++ L++ +K+ Y ++ K + P Sbjct: 284 YDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLY--------TALRGTDKTVAPAGG 335 Query: 477 FDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIEN--ATIAQEPYKLAFYLYDLASVF 532 R + + +F+T + L + R + A +A +L L++V Sbjct: 336 EAFEARFIEAMDDDFNTP--EAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVL 391 >3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A Length = 560 Score = 40.6 bits (94), Expect = 0.001 Identities = 59/434 (13%), Positives = 116/434 (26%), Gaps = 73/434 (16%) Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV----------------------TREYYIN 168 G +H+GH + D G+EV T E I Sbjct: 28 YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIG 87 Query: 169 DAGAQINTL--ALSVFW------------RYQQALYN---NDSDLPEGYYPGVYLKHVGK 211 + + T ++ + + + +Y+ + + +Y G Sbjct: 88 EMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGM 147 Query: 212 ELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDL---KALNIQHDIFISEDDFHRG 268 L D++ P+ K D +L K++ + + + Sbjct: 148 FLPDRFVKG--TCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFF 205 Query: 269 DPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSD 328 D +++ R G + +K + + +Q + P Sbjct: 206 DLPSFSEMLQAWTRSGALQ----EQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGK 261 Query: 329 GSYTYFAADLAYFKCKYERGFDN-----------------MIYVMGSDHSGYVKRLEAVA 371 Y + A + + + +G D ++ Sbjct: 262 YFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAM 321 Query: 372 AAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN 431 S + N+ + V +G MSK G FI ++ +DS+R+ + + Sbjct: 322 LEGSNFRKPSNLFVHGYV--TVNGAK--MSKSRGTFIKASTWLNHFDADSLRYYYTAKLS 377 Query: 432 SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEF 491 S + D D + N R A I D L PQ + Sbjct: 378 SRIDDIDLNLEDFVQRVNADI----VNKVVNLASRNAGFINKRFDGVLASELADPQLYKT 433 Query: 492 DTSELQLIVHLAEY 505 T ++I E Sbjct: 434 FTDAAEVIGEAWES 447 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 39.9 bits (93), Expect = 0.002 Identities = 94/632 (14%), Positives = 155/632 (24%), Gaps = 341/632 (53%) Query: 36 RPRDCAHGHLST----------NA-------AMILSRP---LGLD--PLTIAELIVARIK 73 RP +HG L A IL P D P T AEL V + Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL-VGK-- 63 Query: 74 IDPDVDSVFIAGKGFINLYLSP---SYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSA 130 F+ G+++ + P ++L+ + T+ ++ Sbjct: 64 --------FL---GYVSSLVEPSKVGQFDQVLNLCL--------------TEFENCYLEG 98 Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSG------YEVTREYY--INDAGAQINTLALSVF 182 N +H A+ A L+ + E+ + Y A + + S Sbjct: 99 ND---IH------ALA----AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145 Query: 183 WRYQQ-------ALYN---NDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPI 232 +R A++ N D Y + EL D Y + + + Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDD---------YFE----ELRDLYQT----YH-----VL 183 Query: 233 VKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRG--------DPSPIRDIIDNLARQG 284 V D +K + L L E F +G +PS D + Sbjct: 184 VGDL-----IKFSAETLSELIRTTLDA--EKVFTQGLNILEWLENPSNTPD-------KD 229 Query: 285 YVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFK-- 342 Y +L P S C PL+ G LA++ Sbjct: 230 Y----LLSIPIS-----C--------------------PLI---G-----VIQLAHYVVT 252 Query: 343 CKYERGFDNMIYVMGSD-------------HS-GYVKRLEAVAAAVSEKKAQINVLLCEL 388 K ++G HS G V A A++E Sbjct: 253 AK----------LLGFTPGELRSYLKGATGHSQGLV-----TAVAIAE------------ 285 Query: 389 VRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR---KNS----ELLDFDFCK 441 +DS W + +L Sbjct: 286 ------------------------------TDS------WESFFVSVRKAITVL------ 303 Query: 442 VKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVH 501 F++ RC +A +P +P Sbjct: 304 ----------FFIGV---RCY----EA-----------YPNTSLP--------------- 320 Query: 502 LAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRL-----------RFVQA 550 P ++E D S+ + G +P L +V Sbjct: 321 ----PSILE----------------D--SLENNE---GVPSPMLSISNLTQEQVQDYVNK 355 Query: 551 NNRKLTMMRLQLVHAVASIINSGLNIIGVESP 582 N L + S++N N++ V P Sbjct: 356 TNSHLPAGK----QVEISLVNGAKNLV-VSGP 382 Score = 38.4 bits (89), Expect = 0.005 Identities = 62/283 (21%), Positives = 109/283 (38%), Gaps = 82/283 (28%) Query: 6 DFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCA-H------GHLSTN-AAMILSRPL 57 D +R N+ K+ ILD IVI P + H + N +AMI Sbjct: 1644 DVWNRADNHFKD-----TYGFSILD-IVINNPVNLTIHFGGEKGKRIRENYSAMIFE--- 1694 Query: 58 GLDPLTIAELIVARIKIDPDVDS-----VFIAGKGFINLYLSPSYLRKILSSIVVSGIEY 112 TI + + KI +++ F + KG ++ + + + L+ + + E Sbjct: 1695 -----TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS---ATQFTQPALTLMEKAAFE- 1745 Query: 113 GRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGD-----TLASLMAFSGYEVTREYYI 167 +L KG + A+ T GH +G+ +LA +M+ Sbjct: 1746 --DLKSKG------LIPADAT---FAGHS----LGEYAALASLADVMS------------ 1778 Query: 168 NDAGAQINTLALSVFWR--YQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFP 225 I +L VF+R Q D +L Y G+ + G+ +A +S E L + Sbjct: 1779 ------IESLVEVVFYRGMTMQVAVPRD-ELGRSNY-GMIAINPGR-VAASFSQEALQYV 1829 Query: 226 EEK------WLPIVKDYSVQAMMKIIRDDLKALNIQHDI--FI 260 E+ WL + +Y+V+ + DL+AL+ ++ FI Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872 Score = 33.0 bits (75), Expect = 0.20 Identities = 50/366 (13%), Positives = 96/366 (26%), Gaps = 150/366 (40%) Query: 253 NIQHDIFISE----------DDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKC 302 +++H + + + F++ P P + A P + Sbjct: 15 SLEHVLLVPTASFFIASQLQEQFNKILPEPT----EGFAAD--------DEPTTPA---- 58 Query: 303 DMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYF-AADLAYFKCKYERGFDNMIYVMGSDHS 361 +L+ + +G G + L F+ Y G D I H+ Sbjct: 59 -----ELVGK--FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--I------HA 103 Query: 362 GYVKRLEA-VAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSD 420 +L + + K EL++ Y I A + Sbjct: 104 -LAAKLLQENDTTLVKTK--------ELIKNY-----ITARIMAKRPFDKKS-------- 141 Query: 421 SVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFR-QAKDIFPDLDFDL 479 NS L + ++ A IF Q Sbjct: 142 ----------NSALFR---AVGEGNAQ---------LVA----IFGGQG----------- 164 Query: 480 FPRNVIPQESEFDTSELQLIVHLAEYPRVIEN--ATIAQEPYKL------AFYLY----D 527 N + F+ EL+ + Y ++ + A+ +L A ++ + Sbjct: 165 ---NT---DDYFE--ELRDLYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214 Query: 528 LASVFHGHWSHGREN-PRLRFVQANNRKLTM---MRL----QLVHAVASIINSGLNIIGV 579 + W N P ++ L++ L QL H V + G Sbjct: 215 ILE-----WLENPSNTPDKDYL------LSIPISCPLIGVIQLAHYVVTAKLLGF----- 258 Query: 580 ESPNEM 585 +P E+ Sbjct: 259 -TPGEL 263 Score = 29.9 bits (67), Expect = 1.7 Identities = 35/186 (18%), Positives = 47/186 (25%), Gaps = 89/186 (47%) Query: 7 FSSRLKNYLKEIDCKIKVEKKILD--RIVI-ERPRDCAHGHLSTNAAMILSRPLGLDP-- 61 + L+ K K LD RI ER ++ L + P Sbjct: 389 LNLTLR--------KAKAPSG-LDQSRIPFSERKLKFSNRFLPVAS-----------PFH 428 Query: 62 ---LTIAELIVARIKIDPDVDSVFIAGKGF-INLYLSPSY-------LRK----ILSSIV 106 L A I D ++V K I P Y LR I IV Sbjct: 429 SHLLVPAS---DLINKDLVKNNVSFNAKDIQI-----PVYDTFDGSDLRVLSGSISERIV 480 Query: 107 ----------------------------VSGIEYG----RNLIGKGTKVNIEFVSANPTG 134 SG+ G RN G G +V + A G Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGL--GVLTHRNKDGTGVRV----IVA---G 531 Query: 135 PMHVGH 140 + + Sbjct: 532 TLDINP 537 >2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A* Length = 524 Score = 38.5 bits (89), Expect = 0.004 Identities = 58/387 (14%), Positives = 106/387 (27%), Gaps = 77/387 (19%) Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEVT-----------------------REY-- 165 P G H+GH + D +A GY+V E Sbjct: 22 YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELAR 81 Query: 166 -YINDAGAQINTLALS---------------VFWRYQQALYNNDSDLPEGYYPGVYLKHV 209 + L +S +++ D+ Y G Y Sbjct: 82 RNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAG--DIYLDAYKGWYSIRD 139 Query: 210 GKELADKYSSELLNFPEEKWL---PIVKDYSVQAMMKI--IRDDLKALNIQHDIFISEDD 264 + + ++E + P+ ++ D L AL +H FI D Sbjct: 140 ERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDA 199 Query: 265 FHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPL 324 S + + +L+ ++ +P P Sbjct: 200 RRNEIVSFVSGGLKDLSISRTTFDWGVPVP----------------------DHPDHVMY 237 Query: 325 LKSDGSYTYFAADLAYFKCK--YERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQIN 382 + D Y + R + ++++G D R V A + Sbjct: 238 VWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDII----RFHTVYWPAFLMSAGLP 293 Query: 383 VLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKV 442 + + KMSK G+ + ++VD G D VR+ +L R+ D + + Sbjct: 294 LPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLL-REVPFGQDGSYNED 352 Query: 443 KEQSKENPVFYVQYAYARCRSIFRQAK 469 + N + RS+ AK Sbjct: 353 AIIGRVNADLANELGNLAQRSLSMVAK 379 >1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A Length = 862 Score = 38.4 bits (88), Expect = 0.004 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 4/103 (3%) Query: 327 SDGSYTYFAADLAYFKCKYERGFDNMIYVMGSD-HSGYVKRLEAVAAAVSEKKAQINVLL 385 S + + + + V G D +V R+E ++ Sbjct: 458 SSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKT--- 514 Query: 386 CELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLW 428 L L D KMSK G+ I +V+ G+D++RF +++ Sbjct: 515 VLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIY 557 Score = 32.2 bits (72), Expect = 0.37 Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161 N TG +H+GH + D L G+E Sbjct: 44 NVTGSLHMGHALDNSLQDALIRYKRMRGFEA 74 >1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A* Length = 917 Score = 37.7 bits (86), Expect = 0.007 Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 13/180 (7%) Query: 391 LYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENP 450 DG KMSK G+ I VV + G+D R + + +K+ S Sbjct: 587 FVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD--- 643 Query: 451 VFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIE 510 Y + R+ R D P ESE + L+ L E+ Sbjct: 644 ------DYRKIRNTLRF----MLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTI 693 Query: 511 NATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASII 570 N + + + + +V ++ L Q ++ M+ L + + Sbjct: 694 NNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMT 753 Score = 31.1 bits (69), Expect = 0.61 Identities = 6/31 (19%), Positives = 12/31 (38%) Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161 G +H+GH ++ D + G+ Sbjct: 58 YANGNLHMGHALNKILKDFIVRYKTMQGFYA 88 >2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A Length = 500 Score = 37.4 bits (85), Expect = 0.008 Identities = 37/324 (11%), Positives = 86/324 (26%), Gaps = 36/324 (11%) Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTR--------------------------E 164 H+GH VV D LA GY + Sbjct: 13 YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVD 72 Query: 165 YYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNF 224 + L ++ + + + E D Y E Sbjct: 73 RVSGRFKRAWDLLGIAYDDFIR-------TTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125 Query: 225 PEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQG 284 + + + I + + F + + I++ D + +G Sbjct: 126 YCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEG 185 Query: 285 YVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCK 344 Y E + + + ++ + + D+ + D Y +A Sbjct: 186 YRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEA 245 Query: 345 YERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRA 404 Y + + +++G D + ++ + + MSK Sbjct: 246 YRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRK---MSKTL 302 Query: 405 GDFITLRHVVDEVGSDSVRFMMLW 428 G+ + ++++ G D++R+ +L Sbjct: 303 GNVVDPFALLEKYGRDALRYYLLR 326 >1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A* Length = 821 Score = 36.5 bits (83), Expect = 0.018 Identities = 28/229 (12%), Positives = 60/229 (26%), Gaps = 11/229 (4%) Query: 265 FHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPL 324 + I + + + P ++ + V Sbjct: 459 WVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVW 518 Query: 325 LKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHS-GYVKRLEAVAAAVSEKKAQINV 383 S + + F G D + G+ L + + A NV Sbjct: 519 YDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNV 578 Query: 384 LLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVK 443 + L+ D KMSK G+ + ++ + G+D++R+ + E + Sbjct: 579 ICHGLIL---DEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPE-------ADR 628 Query: 444 EQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFD 492 V+ + +++ DL + E D Sbjct: 629 RFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMD 677 Score = 31.9 bits (71), Expect = 0.44 Identities = 8/31 (25%), Positives = 9/31 (29%) Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161 G HVGH + D GY Sbjct: 48 TANGLPHVGHAQARSYKDLFPRYKTMRGYYA 78 >2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A* Length = 497 Score = 36.1 bits (82), Expect = 0.024 Identities = 8/33 (24%), Positives = 12/33 (36%) Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTR 163 H+GH + DT+A Y+V Sbjct: 15 YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFF 47 >3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major} Length = 564 Score = 34.3 bits (78), Expect = 0.082 Identities = 23/187 (12%), Positives = 42/187 (22%), Gaps = 75/187 (40%) Query: 132 PTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYN 191 H+GH ++ D L G EV Sbjct: 37 VNASPHIGHVYSTLIVDVLGRYHRVKGEEV---------------------------FVM 69 Query: 192 NDSD---LP-------EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAM 241 +D +G P + S Sbjct: 70 TGTDEHGQKVAEAAAKQGVSP--------MDFTTSVS----------------------- 98 Query: 242 MKIIRDDLKALNIQHDIFI--SEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTT 299 + + +N + FI + + ++DI LA +G +Y G S + Sbjct: 99 -SEFKQCFQEMNYDMNYFIRTTNPTHEKL----VQDIWKKLAAKGDIYLGKYEGWYSVSD 153 Query: 300 QKCDMDR 306 + + Sbjct: 154 ESFLTAQ 160 >3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 592 Score = 33.8 bits (77), Expect = 0.12 Identities = 33/227 (14%), Positives = 62/227 (27%), Gaps = 49/227 (21%) Query: 237 SVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIR---------DIIDNLARQGYVY 287 S + + I + L+ + D E GD P R + + L Y Sbjct: 176 SSREYEQQILESLRWCGLDWD----EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 231 Query: 288 --------------EGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDV------------D 321 P + K + ++L T D + D Sbjct: 232 YVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLED 291 Query: 322 RPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQI 381 ++KS+G TY + A + ++ G DH + + A + Sbjct: 292 FIIMKSNGFPTY---NFAVVVDDHLMRISHVF--RGEDHLSNTPKQLMIYEAFGWEAPV- 345 Query: 382 NVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLW 428 + L +SKR G + + S ++ + Sbjct: 346 ----FMHIPLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLAL 388 Score = 31.1 bits (70), Expect = 0.69 Identities = 8/15 (53%), Positives = 11/15 (73%) Query: 131 NPTGPMHVGHCRCAV 145 +PTG +HVG R A+ Sbjct: 137 SPTGHLHVGGARTAL 151 >1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii} Length = 810 Score = 33.5 bits (75), Expect = 0.12 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 386 CELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDF 439 V + KMSK G+ + ++E G+D VR ++ DFD+ Sbjct: 637 GIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIM-SLAEHDSDFDW 689 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/31 (35%), Positives = 15/31 (48%) Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161 +G +HVGH R + D +A GY V Sbjct: 44 YLSGHLHVGHARTYTIPDVIARFKRMQGYNV 74 >3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 553 Score = 31.9 bits (72), Expect = 0.35 Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 131 NPTGPMHVGHCRCAVVGDTLA 151 NP+GP+H+GH R A++ A Sbjct: 104 NPSGPLHIGHARAAILNHEYA 124 >1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1 Length = 722 Score = 31.8 bits (71), Expect = 0.42 Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 6/54 (11%) Query: 238 VQAMMKIIRDDLKALNIQHDIFI--SEDDFHRGDPSPIRDIIDNLARQGYVYEG 289 V + I+ + I D F ++ ++ G++ + Sbjct: 71 VDEFHEQIKITFQRAKISFDFFGRTELPIHYKL----SQEFFLKAYENGHLVKK 120 Score = 29.1 bits (64), Expect = 2.6 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%) Query: 131 NPTGPMHVGHCR-CAVVGDTLASLMAFSGYEV 161 GP+H GH + D + G +V Sbjct: 12 YANGPIHAGHLAGAYLPADIFVRYLRLKGEDV 43 >1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 3.21A {Pyrococcus horikoshii OT3} Length = 967 Score = 31.5 bits (70), Expect = 0.45 Identities = 11/31 (35%), Positives = 15/31 (48%) Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161 +G +HVGH R + D +A GY V Sbjct: 44 YLSGHLHVGHARTYTIPDVIARFKRMQGYNV 74 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 31.5 bits (70), Expect = 0.52 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 6/31 (19%) Query: 226 EEKWLPIVKDYSVQAMMKIIRDD-LKALNIQ 255 E++ L K +QA +K+ DD AL I+ Sbjct: 18 EKQAL---K--KLQASLKLYADDSAPALAIK 43 Score = 30.7 bits (68), Expect = 0.97 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 6/30 (20%) Query: 376 EKKAQINVLLCELVRLYR-DGMP---IKMS 401 EK+A + L L +LY D P IK + Sbjct: 18 EKQA-LKKLQASL-KLYADDSAPALAIKAT 45 Score = 28.4 bits (62), Expect = 5.0 Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 9/24 (37%) Query: 187 QA---LYNNDSDLPEGYYPGVYLK 207 QA LY +DS P + +K Sbjct: 26 QASLKLYADDSA------PALAIK 43 >1xd7_A YWNA; structural genomics, protein structure initiative, winged helix DNA binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55 Length = 145 Score = 31.5 bits (71), Expect = 0.58 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 10/61 (16%) Query: 50 AMILSRPLGLDPLTIAELIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSG 109 ++I SR L +A I++ I +D S IA ++ +P +R+++S + + Sbjct: 2 SLINSR------LAVAIHILSLISMDEKTSSEIIAD----SVNTNPVVVRRMISLLKKAD 51 Query: 110 I 110 I Sbjct: 52 I 52 >2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A* Length = 878 Score = 31.3 bits (70), Expect = 0.61 Identities = 13/31 (41%), Positives = 18/31 (58%) Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161 P+G +H+GH + +GD LA GYEV Sbjct: 43 YPSGDLHMGHLKNYTMGDVLARFRRMQGYEV 73 >1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A Length = 553 Score = 30.8 bits (69), Expect = 0.91 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%) Query: 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLA 151 GK T V+ F P G +H+GH + + +A Sbjct: 22 GKHTTVHTRF-PPEPNGYLHIGHAKSICLNFGIA 54 >3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} Length = 488 Score = 30.7 bits (69), Expect = 0.94 Identities = 8/15 (53%), Positives = 11/15 (73%) Query: 131 NPTGPMHVGHCRCAV 145 +PTG +HVG R A+ Sbjct: 33 SPTGHLHVGGARTAL 47 >1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* Length = 298 Score = 30.4 bits (68), Expect = 1.0 Identities = 6/21 (28%), Positives = 10/21 (47%) Query: 131 NPTGPMHVGHCRCAVVGDTLA 151 +P+G +H G A+ A Sbjct: 13 SPSGELHFGSLIAALGSYLQA 33 >2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans} Length = 851 Score = 30.4 bits (68), Expect = 1.0 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 118 GKGTKVNIEFVSANPTGPMHVGHCRCAV 145 GK +V F +P+G H+GH ++ Sbjct: 62 GKYPRVVTRF-PPDPSGYAHLGHVFASL 88 >1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444 Score = 30.5 bits (68), Expect = 1.1 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 37/115 (32%) Query: 249 LKALNIQHDIFISEDDF-----HRGDPSPIRDIIDN---LARQGYVYEGILPPPKSKTTQ 300 + AL IQH ++S +F ++ P+PI I R VY +LPPP+ + T+ Sbjct: 304 VSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVY--VLPPPEEEMTK 361 Query: 301 K--------------------CDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFA 335 K + + +L +++T P+L SDGSY ++ Sbjct: 362 KQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT-------EPVLDSDGSYFMYS 409 >2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- binding, protein biosynthesis; HET: GLU; 2.45A {Synechococcus elongatus} Length = 492 Score = 30.2 bits (67), Expect = 1.1 Identities = 9/21 (42%), Positives = 12/21 (57%) Query: 131 NPTGPMHVGHCRCAVVGDTLA 151 +PTG +H+G R AV A Sbjct: 9 SPTGNLHIGTARTAVFNWLYA 29 >2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate- tRNA ligase 1, glurs 1, structural genomics; 2.34A {Thermotoga maritima} Length = 481 Score = 30.1 bits (67), Expect = 1.2 Identities = 9/21 (42%), Positives = 12/21 (57%) Query: 131 NPTGPMHVGHCRCAVVGDTLA 151 +PTG +HVG R A+ A Sbjct: 21 SPTGFLHVGGARTALFNFLFA 41 >2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} Length = 498 Score = 29.9 bits (66), Expect = 1.6 Identities = 9/21 (42%), Positives = 11/21 (52%) Query: 131 NPTGPMHVGHCRCAVVGDTLA 151 +PTG HVG R A+ A Sbjct: 14 SPTGTPHVGLVRTALFNWAYA 34 >1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A Length = 468 Score = 29.7 bits (66), Expect = 2.0 Identities = 8/21 (38%), Positives = 10/21 (47%) Query: 131 NPTGPMHVGHCRCAVVGDTLA 151 +PTG HVG A+ A Sbjct: 9 SPTGDPHVGTAYIALFNYAWA 29 >2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 172 Score = 29.3 bits (65), Expect = 2.4 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%) Query: 313 STMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERG 348 G ++D PL K+DG+ A YF+C+ + G Sbjct: 66 GEWCGVELDEPLGKNDGAV----AGTRYFQCQPKYG 97 >2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Aeropyrum pernix} Length = 364 Score = 28.7 bits (63), Expect = 3.5 Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 1/34 (2%) Query: 107 VSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGH 140 + E + L+ G ++ ++ P+G H+G Sbjct: 20 IVTEEELKGLLASGARIKG-YIGYEPSGVAHIGW 52 >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A Length = 852 Score = 28.8 bits (63), Expect = 3.6 Identities = 9/36 (25%), Positives = 14/36 (38%) Query: 266 HRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQK 301 + D + + L R G + GI K T+K Sbjct: 242 YNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKK 277 >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359 Score = 27.7 bits (61), Expect = 7.3 Identities = 7/67 (10%), Positives = 21/67 (31%), Gaps = 4/67 (5%) Query: 6 DFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIA 65 F +++ + K + + A + + P+ ++ L Sbjct: 96 LFKDHVEDVNFQPV---KYSALTSNNEECTAVVARGGTANAIRIAAVDN-PVNVNKLAQD 151 Query: 66 ELIVARI 72 + +A+I Sbjct: 152 SINIAQI 158 >2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 100 Score = 27.9 bits (62), Expect = 7.4 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%) Query: 312 RSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERG 348 T VG ++D P K+DGS YF+C G Sbjct: 50 EGTWVGVELDLPSGKNDGSI----GGKQYFRCNPGYG 82 >2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 95 Score = 27.8 bits (62), Expect = 7.5 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%) Query: 314 TMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERG 348 VG ++D P K+DGS + YF C ++G Sbjct: 45 QWVGVELDEPEGKNDGSV----GGVRYFICPPKQG 75 >3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae} Length = 295 Score = 27.6 bits (60), Expect = 7.8 Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 6/158 (3%) Query: 230 LPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEG 289 L V S+ + K I+D L + D + GD S + + L G Sbjct: 8 LQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVV 67 Query: 290 ILPPPKSKTTQKCDMDRKQLLFRSTM-VGDDVDRPLLKSDGSYTYFAADLAY-----FKC 343 + P ++ D ++ T +G ++ + L K G+ T + Sbjct: 68 GIATPAAQGLASATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIK 127 Query: 344 KYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQI 381 + + S ++E A + + Sbjct: 128 ALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTV 165 >1nex_A Centromere DNA-binding protein complex CBF3 subunit D; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, ligase, cell cycle; HET: TPO; 2.70A {Saccharomyces cerevisiae} SCOP: a.157.1.1 d.42.1.1 Length = 169 Score = 27.6 bits (61), Expect = 7.9 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 1/68 (1%) Query: 440 CKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLI 499 V S E F V A + + + D D + V+P +S LQ + Sbjct: 7 SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPV-PNVRSSVLQKV 65 Query: 500 VHLAEYPR 507 + AE+ R Sbjct: 66 IEWAEHHR 73 >2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus horikoshii OT3} Length = 375 Score = 27.5 bits (60), Expect = 8.3 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Query: 98 LRKILSSIV--VSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGH 140 + +L V +E R+L G + ++ +G +H+G Sbjct: 7 INLVLKKPTEEVLTVENLRHLFEIGAPLQH-YIGFEISGYIHLGT 50 >1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Length = 468 Score = 27.5 bits (60), Expect = 8.9 Identities = 9/46 (19%), Positives = 19/46 (41%) Query: 37 PRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDSVF 82 P AH + ++ + ++ L++ +L + DV VF Sbjct: 385 PFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVF 430 >2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 Length = 84 Score = 27.4 bits (61), Expect = 9.1 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%) Query: 314 TMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERG 348 G ++D PL K+DG+ A YF+C + G Sbjct: 36 EWCGVELDEPLGKNDGAV----AGTRYFQCPPKFG 66 >1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, aspartase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Length = 457 Score = 27.2 bits (59), Expect = 9.3 Identities = 11/46 (23%), Positives = 18/46 (39%) Query: 37 PRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDSVF 82 P AH + + + L+ L ++EL ID DV + Sbjct: 380 PFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPIL 425 >2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A Length = 119 Score = 27.5 bits (61), Expect = 9.6 Identities = 4/27 (14%), Positives = 19/27 (70%) Query: 4 FADFSSRLKNYLKEIDCKIKVEKKILD 30 + + +S+ ++ LK+++ +++ +K ++ Sbjct: 73 YQELASKYEDALKKLEAEMEQQKAVIS 99 >2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS guanine nucleotide releasing factor, RAS-specific nucleotide exchange factor; 2.20A {Mus musculus} Length = 240 Score = 27.3 bits (60), Expect = 9.7 Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 20/130 (15%) Query: 342 KCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMS 401 C+ ++ ++ + S + + RL+ VS++ + L +LV Sbjct: 86 ICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDG-------- 137 Query: 402 KRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARC 461 F LR + V ++ ++ + ++ E N +++ Sbjct: 138 ----RFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVN--------FSKM 185 Query: 462 RSIFRQAKDI 471 R I ++I Sbjct: 186 RMISHIIREI 195 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.322 0.139 0.412 Gapped Lambda K H 0.267 0.0434 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 5,267,547 Number of extensions: 255143 Number of successful extensions: 810 Number of sequences better than 10.0: 1 Number of HSP's gapped: 777 Number of HSP's successfully gapped: 77 Length of query: 586 Length of database: 5,693,230 Length adjustment: 98 Effective length of query: 488 Effective length of database: 3,317,318 Effective search space: 1618851184 Effective search space used: 1618851184 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 59 (27.3 bits)