RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (586 letters)



>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural
           genomics, protein structure initiative; 2.20A
           {Campylobacter jejuni}
          Length = 464

 Score =  387 bits (996), Expect = e-108
 Identities = 148/494 (29%), Positives = 257/494 (52%), Gaps = 41/494 (8%)

Query: 93  LSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLAS 152
           LS ++L ++ +  + +  ++ +    K     +E+VSANPTGP+H+GH R AV GDTL  
Sbjct: 3   LSKTFLNELANQALTNPNDFTKGE-KKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTR 61

Query: 153 LMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKE 212
           L    GY+   EYY+NDAG QI  L LS+    ++++ + + + PE YY G Y+  + KE
Sbjct: 62  LARHLGYKFNTEYYVNDAGNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKE 121

Query: 213 LADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSP 272
             +K+  E   F  E+ +P + D++   M+ +I+ +L+   I+ D ++SE  ++      
Sbjct: 122 AFEKFGKE---FFSEENIPSLADWAKDKMLVLIKQNLEQAKIKIDSYVSERSYYD----A 174

Query: 273 IRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYT 332
           +   +++L     +YE                   ++   S+  GD+ DR +++ DG  T
Sbjct: 175 LNATLESLKEHKGIYE----------------QEGKIWLASSQKGDEKDRVIIREDGRGT 218

Query: 333 YFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLY 392
           Y AAD+ Y K K  RG+   I + G+DH GY+ R++A    +      + ++L ++V L 
Sbjct: 219 YLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLL 278

Query: 393 RDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVF 452
           +DG P KMSKRAG+FI +  VVDE+GSD++R++ L +K    L+FD   ++++   NPV+
Sbjct: 279 KDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVY 338

Query: 453 YVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENA 512
           Y+ YA+AR   +F +A     D+                +   + L+        V+ +A
Sbjct: 339 YINYAHARIHQVFAKAGKKIDDVMKADL--------QSLNQDGVNLLFEALNLKAVLNDA 390

Query: 513 TIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINS 572
             A+   K+  YL +LA+ FH  ++        + V + N       L+L   VA  I +
Sbjct: 391 FEARALQKIPDYLKNLAANFHKFYNEN------KVVGSANEND---LLKLFSLVALSIKT 441

Query: 573 GLNIIGVESPNEMS 586
             +++G+E+ N+M 
Sbjct: 442 AFSLMGIEAKNKME 455


>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation,
           ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC
           5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP:
           a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
          Length = 607

 Score =  370 bits (952), Expect = e-103
 Identities = 127/611 (20%), Positives = 226/611 (36%), Gaps = 74/611 (12%)

Query: 11  LKNYLKEIDCKIK-VEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIV 69
           ++NY+ +   KI  V+  ++    +E       G L      +     G +P  +A    
Sbjct: 35  MRNYISQELSKISGVDSSLIFPA-LEWTNTMERGDLLIPIPRLRI--KGANPKDLAVQWA 91

Query: 70  ARIKIDPDVDSVFIAGKGFINLYLSPSYLRK-ILSSIVVSGIEYGRNLIGKGTKVNIEFV 128
            +      ++ V   G  FI  + +P +L K ++  I+    +YG   + +  KV IEF 
Sbjct: 92  EKFPCGDFLEKVEANG-PFIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFS 150

Query: 129 SANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQA 188
           S N   P H GH R  ++G  LA+L    G+EV R  Y+ D G Q   LA+       + 
Sbjct: 151 SPNIAKPFHAGHLRSTIIGGFLANLYEKLGWEVIRMNYLGDWGKQFGLLAVGFERYGNEE 210

Query: 189 LYNNDSD---------LPEGYYPGVYLKHVGKELADKYSSELLNF--PEEKWLPIVKDYS 237
               D           + +          + +    K           +E+ L I K + 
Sbjct: 211 ALVKDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMEDGDEEALKIWKRF- 269

Query: 238 VQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSK 297
            +  ++   D    LNI++D++  E    +     +   ID    +G  +E         
Sbjct: 270 REFSIEKYIDTYARLNIKYDVYSGESQVSKES---MLKAIDLFKEKGLTHE--------- 317

Query: 298 TTQKCDMDRKQLLFRSTMVGDDVDRPLL-KSDGSYTYFAADLAYFKCKYER-GFDNMIYV 355
                  D+  +L   T     + + ++ KSDG+  Y   D+     +YE+  FD MIYV
Sbjct: 318 -------DKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYV 370

Query: 356 MGSDHSGYVKRLEAVAAAVSEKKAQI------------------NVLLCELVRLYRDGMP 397
           + S    +  +   +   +  + A+                    V L  ++   ++ M 
Sbjct: 371 IASQQDLHAAQFFEILKQMGFEWAKDLQHVNFGMVQGMSTRKGTVVFLDNILEETKEKMH 430

Query: 398 IKMSKRAGDFITLRH---VVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYV 454
             M K    +  + H   V D VG  +V    +  K     +F + ++     +    Y+
Sbjct: 431 EVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRINNYEFKWERMLSFEGDTG-PYL 489

Query: 455 QYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATI 514
           QYA++R RS+ R A  I  +   +             + +   LI  L +YP V+ NA  
Sbjct: 490 QYAHSRLRSVERNASGITQEKWIN------ADFSLLKEPAAKLLIRLLGQYPDVLRNAIK 543

Query: 515 AQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGL 574
             EP  +  YL+ L       +           V     +L   RL L  A   ++ +G+
Sbjct: 544 THEPTTVVTYLFKLTHQVSSCYDVLW-------VAGQTEELATARLALYGAARQVLYNGM 596

Query: 575 NIIGVESPNEM 585
            ++G+     M
Sbjct: 597 RLLGLTPVERM 607


>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics
           initiative, RSGI, structural genomics, ligase; 2.30A
           {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
          Length = 592

 Score =  336 bits (861), Expect = 1e-92
 Identities = 126/627 (20%), Positives = 226/627 (36%), Gaps = 88/627 (14%)

Query: 11  LKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVA 70
           L+  L+E   +   E  +  R+ + R      G         L++ L   P  IA+ +  
Sbjct: 2   LRRALEEAIAQALKEMGVPVRLKVARAPKDKPGDYGVPL-FALAKELRKPPQAIAQELKD 60

Query: 71  RIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSA 130
           R+ +   V+     G G++N  L    L   L   +     + R    +   V +E  S 
Sbjct: 61  RLPLPEFVEEAVPVG-GYLNFRLRTEAL---LREALRPKAPFPR----RPGVVLVEHTSV 112

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALY 190
           NP   +HVGH R   +GD +A ++A++G EV    YI+D G Q      ++         
Sbjct: 113 NPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDG 172

Query: 191 NNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLK 250
               D   G       +    E       E+L+  E   L       V  ++      + 
Sbjct: 173 KEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGEL----REEVNRILLAQMATMH 228

Query: 251 ALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLL 310
           ALN ++D+ + E D  R     ++  +  L +  +V+                       
Sbjct: 229 ALNARYDLLVWESDIVRAGL--LQKALALLEQSPHVFRPREGKYAGALVMDASPV----- 281

Query: 311 FRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCK-----------YERGFDNMIYVMGSD 359
                  +D    LL+S+G+ TY+A D+A+   K           YE  +   +     +
Sbjct: 282 ---IPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPE 338

Query: 360 HSGYVKRLEAVAAAVSEKKAQINVL----------------LCELVRLYRDGMPIKMSKR 403
              Y  + E     V  +++    L                   L          +MS R
Sbjct: 339 GEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGR 398

Query: 404 AGDFITLRHVVDE-------------------------VGSDSVRFMMLWRKNSELLDFD 438
            G  +++  V++E                         V   ++RF M+  +  + +DF 
Sbjct: 399 KGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFR 458

Query: 439 FCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQL 498
           + +      +    YVQYA+AR  SI R+A +               P  S+    E  L
Sbjct: 459 YQEALSFEGDTG-PYVQYAHARAHSILRKAGEWG------------APDLSQATPYERAL 505

Query: 499 IVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMM 558
            + L ++   +  A   + P+ LA YL DLA+ ++ +++          V      L  +
Sbjct: 506 ALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLREL 565

Query: 559 RLQLVHAVASIINSGLNIIGVESPNEM 585
           RL LV ++   + +GL+++G+ +P  M
Sbjct: 566 RLSLVQSLQRTLATGLDLLGIPAPEVM 592


>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding,
           cytoplasm, ligase, nucleotide-binding, protein
           biosynthesis, ligase/RNA complex; HET: ANP; 2.00A
           {Pyrococcus horikoshii} PDB: 2zuf_A
          Length = 629

 Score =  321 bits (824), Expect = 2e-88
 Identities = 134/652 (20%), Positives = 259/652 (39%), Gaps = 92/652 (14%)

Query: 1   MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLD 60
           M +      R++  +KEI  + + E      I ++   D   G   T  A  L++ L   
Sbjct: 3   MEIRESVKERIEEIIKEIAPQWEGE------IELKETPDPKLGDFGTPIAFKLAKLLKRP 56

Query: 61  PLTIAELIVARIKID-PDVDSVFIAGKGFINLYLSPSYL-RKILSSIVVSGIEYGRNLIG 118
           P+ IAE IV ++K++ P+      A  G+IN+++   +  R +++ I+  G  +G + IG
Sbjct: 57  PIEIAEKIVEKLKLNLPEGIKDVKAVNGYINVFIDYPHFARILINDILAKGDRFGSSEIG 116

Query: 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLA 178
           KG KV +E  S NPT P+H+GH R A++GD +A ++ F GYEV  + YI+D G Q   + 
Sbjct: 117 KGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFLGYEVEVQNYIDDLGIQFAQVY 176

Query: 179 LSVFWRYQQALYNNDSDLPEGYYPG---------VYLKHVGKELADKYSSELLNFPEEKW 229
              + R ++      ++L E              +Y++   +   +      +    +K 
Sbjct: 177 WG-YLRLKEEFERIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKKL 235

Query: 230 LPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEG 289
                     A   +    +    +     +   +            ++ L++    Y  
Sbjct: 236 ESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVRRKLFEIALELLSKNENFYIP 295

Query: 290 ILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYER-- 347
                +              L +      +    L +SDG+ TY   D+AY   K+ +  
Sbjct: 296 SDGKYR--------GAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKID 347

Query: 348 ---------------------------GFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQ 380
                                        + +I V+G++       ++     +  + A 
Sbjct: 348 VDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVINVIGAEQKHPQLAIKYALQLLGFEDAA 407

Query: 381 IN-----------------VLLCELVRLYRDGMPIKMSKRAGDFI----------TLRHV 413
            N                       V    D +  +  KRA + I              V
Sbjct: 408 ANLYHLAYEHVERPEGKFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNPALSDEEKAEV 467

Query: 414 VDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFP 473
            ++VG  ++R+ ++     + + F +  V     E+   Y+QYA+ARC SI R+A++   
Sbjct: 468 AEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNFEGES-APYIQYAHARCSSILRKAEEEGI 526

Query: 474 DLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFH 533
            +D +   +N     ++    E +L++ L+++PR++E A    +P+ +A++  +LAS+F+
Sbjct: 527 KVDPETLFKNA--DFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFN 584

Query: 534 GHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585
             +           V      +   RL LV AV  ++ + L ++G+E+P  M
Sbjct: 585 KFYMDHP-------VLKAEEGVREARLLLVMAVEQVLKNALYLMGIEAPERM 629


>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure,
           rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus
           horikoshii} SCOP: a.97.1.2 c.26.1.1
          Length = 523

 Score =  129 bits (325), Expect = 1e-30
 Identities = 45/322 (13%), Positives = 96/322 (29%), Gaps = 19/322 (5%)

Query: 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTL 177
           G+  K  +E     P+G +HVG+ R       +   +   GYEV   +  +D        
Sbjct: 17  GEKEKYVVES-GITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRKV- 74

Query: 178 ALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYS 237
             +V   ++  L    S++P+ +              ++   +L    +  +    + Y 
Sbjct: 75  PRNVPQEWKDYLGMPISEVPDPWGCHESYAEHFMRKFEEEVEKLGIEVDLLY--ASELYK 132

Query: 238 VQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSK 297
                + IR   +  +   +I     +  +  P P            +    +  P   +
Sbjct: 133 RGEYSEEIRLAFEKRDKIMEILNKYREIAKQPPLPEN----------WWPAMVYCPEHRR 182

Query: 298 TTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMG 357
             +  + D    +      G +    +   +    +               F       G
Sbjct: 183 EAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDW-----PMRWSHFGVDFEPAG 237

Query: 358 SDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEV 417
            DH       +     + E   +   L      +   G   KMS   G+ I L  + + +
Sbjct: 238 KDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGIKGQKGKMSGSKGNVILLSDLYEVL 297

Query: 418 GSDSVRFMMLWRKNSELLDFDF 439
               VRF+    + ++ +  D 
Sbjct: 298 EPGLVRFIYARHRPNKEIKIDL 319


>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumoniae
           MGH 78578, structural genomics, PSI-2, protein structure
           initiative; HET: MSE; 2.20A {Klebsiella pneumoniae
           subsp}
          Length = 109

 Score = 77.3 bits (190), Expect = 9e-15
 Identities = 24/106 (22%), Positives = 48/106 (45%), Gaps = 6/106 (5%)

Query: 1   MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLD 60
           M + A  S ++   L         E        + +      G    N  M +++ LG+ 
Sbjct: 4   MNIQALLSEKVSQALIAAGAPADCE------PQVRQSAKVQFGDYQANGVMAVAKKLGMA 57

Query: 61  PLTIAELIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIV 106
           P  +AE +++ + ++   + V IAG GFIN++L P++L   ++  +
Sbjct: 58  PRQLAEQVLSHLDLNGIANKVEIAGPGFINIFLDPAFLADNVNRAL 103


>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA
           inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA
           synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium
           smegmatis}
          Length = 414

 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 42/315 (13%), Positives = 84/315 (26%), Gaps = 40/315 (12%)

Query: 132 PT--GPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQAL 189
            T     H+GH    +  D +  L   +G+ V     + D    +   A      ++   
Sbjct: 47  ITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAERDGIDWRT-- 104

Query: 190 YNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDY---SVQAMMKIIR 246
                                  L D+ +       +   L ++  +   +    +  + 
Sbjct: 105 -----------------------LGDRETQLFRE--DMAALRVLPPHDYVAATDAIAEVV 139

Query: 247 DDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDR 306
           + ++ L      +I ED  +                 GY  + +L     +        +
Sbjct: 140 EMVEKLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGK 199

Query: 307 KQLLFRSTMVGDDVDRPLLKS---DGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGY 363
              L       +    P   S    G   +     A    +   G D  I   GSD    
Sbjct: 200 SDQLDALLWRAERPGEPSWPSPFGRGRPGWHVECSAIALTRIGTGLD--IQGGGSDLIFP 257

Query: 364 VKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-VGSDSV 422
                A  A     + +          +  DG    MSK  G+ + +  +  + V   ++
Sbjct: 258 HHEYSAAHAESVTGERRFARHYVHTGMIGWDGHK--MSKSRGNLVLVSQLRAQGVDPSAI 315

Query: 423 RFMMLWRKNSELLDF 437
           R  +      E   +
Sbjct: 316 RLGLFSGHYREDRFW 330


>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine,
           E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1
           c.26.1.1 PDB: 1li7_A 1u0b_B
          Length = 461

 Score = 58.2 bits (140), Expect = 5e-09
 Identities = 65/418 (15%), Positives = 131/418 (31%), Gaps = 73/418 (17%)

Query: 132 PT--GPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQAL 189
            T     H+GH R  V  D +A  + F GY++     I D   +I           ++A 
Sbjct: 30  ITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKII----------KRAN 79

Query: 190 YNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDL 249
            N +S                  + D+               I + +     + I+R D+
Sbjct: 80  ENGESF---------------VAMVDRM--------------IAEMHKDFDALNILRPDM 110

Query: 250 K---ALNIQHDIFISEDDFHRGD-----PSPIRDIIDNLARQGYVYEGILPPPKSKTTQK 301
           +     +I   I ++E    +G         +   +      G +    L   ++     
Sbjct: 111 EPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVD 170

Query: 302 CDMDRKQ----LLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMG 357
              D++     +L++ +  G+               +  + +   CK      N   + G
Sbjct: 171 VVDDKRNPMDFVLWKMSKEGEP--SWPSPWGAGRPGWHIECSAMNCKQ---LGNHFDIHG 225

Query: 358 SDHSGYVKRLEAVAAAVSEKKAQINV-LLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE 416
                     E   A  +       V        +  D    KMSK  G+F T+R V+  
Sbjct: 226 GGSDLMFPHHENEIAQSTCAHDGQYVNYWMHSGMVMVDR--EKMSKSLGNFFTVRDVLKY 283

Query: 417 VGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLD 476
             +++VR+ ++       L++    +K+        Y         ++    K + P   
Sbjct: 284 YDAETVRYFLMSGHYRSQLNYSEENLKQARAALERLY--------TALRGTDKTVAPAGG 335

Query: 477 FDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIEN--ATIAQEPYKLAFYLYDLASVF 532
                R +   + +F+T   +    L +  R +    A        +A +L  L++V 
Sbjct: 336 EAFEARFIEAMDDDFNTP--EAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVL 391


>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA
           synthetase, ATP-binding, cytoplasm, ligase,
           metal-binding, nucleotide-binding; HET: CIT; 1.40A
           {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A
           3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A*
           1pg2_A* 1qqt_A 1mea_A 1med_A
          Length = 560

 Score = 40.6 bits (94), Expect = 0.001
 Identities = 59/434 (13%), Positives = 116/434 (26%), Gaps = 73/434 (16%)

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV----------------------TREYYIN 168
              G +H+GH    +  D         G+EV                      T E  I 
Sbjct: 28  YANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIG 87

Query: 169 DAGAQINTL--ALSVFW------------RYQQALYN---NDSDLPEGYYPGVYLKHVGK 211
           +   +  T     ++ +            +  + +Y+    +  +       +Y    G 
Sbjct: 88  EMSQEHQTDFAGFNISYDNYHSTHSEENRQLSELIYSRLKENGFIKNRTISQLYDPEKGM 147

Query: 212 ELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDL---KALNIQHDIFISEDDFHRG 268
            L D++       P+ K      D            +L   K++       + + +    
Sbjct: 148 FLPDRFVKG--TCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVMRDSEHFFF 205

Query: 269 DPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSD 328
           D     +++    R G +         +K  +  +   +Q            + P     
Sbjct: 206 DLPSFSEMLQAWTRSGALQ----EQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGK 261

Query: 329 GSYTYFAADLAYFKCKYERGFDN-----------------MIYVMGSDHSGYVKRLEAVA 371
             Y +  A +                              + + +G D   ++       
Sbjct: 262 YFYVWLDAPIGLMGSFKNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAM 321

Query: 372 AAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN 431
              S  +   N+ +   V    +G    MSK  G FI     ++   +DS+R+    + +
Sbjct: 322 LEGSNFRKPSNLFVHGYV--TVNGAK--MSKSRGTFIKASTWLNHFDADSLRYYYTAKLS 377

Query: 432 SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEF 491
           S + D D        + N                R A  I    D  L      PQ  + 
Sbjct: 378 SRIDDIDLNLEDFVQRVNADI----VNKVVNLASRNAGFINKRFDGVLASELADPQLYKT 433

Query: 492 DTSELQLIVHLAEY 505
            T   ++I    E 
Sbjct: 434 FTDAAEVIGEAWES 447


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 94/632 (14%), Positives = 155/632 (24%), Gaps = 341/632 (53%)

Query: 36  RPRDCAHGHLST----------NA-------AMILSRP---LGLD--PLTIAELIVARIK 73
           RP   +HG L             A         IL  P      D  P T AEL V +  
Sbjct: 7   RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL-VGK-- 63

Query: 74  IDPDVDSVFIAGKGFINLYLSP---SYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSA 130
                   F+   G+++  + P       ++L+  +              T+    ++  
Sbjct: 64  --------FL---GYVSSLVEPSKVGQFDQVLNLCL--------------TEFENCYLEG 98

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSG------YEVTREYY--INDAGAQINTLALSVF 182
           N    +H      A+     A L+  +        E+ + Y      A    +  + S  
Sbjct: 99  ND---IH------ALA----AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145

Query: 183 WRYQQ-------ALYN---NDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPI 232
           +R          A++    N  D         Y +    EL D Y +    +       +
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDD---------YFE----ELRDLYQT----YH-----VL 183

Query: 233 VKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRG--------DPSPIRDIIDNLARQG 284
           V D      +K   + L  L         E  F +G        +PS   D       + 
Sbjct: 184 VGDL-----IKFSAETLSELIRTTLDA--EKVFTQGLNILEWLENPSNTPD-------KD 229

Query: 285 YVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFK-- 342
           Y    +L  P S     C                    PL+   G        LA++   
Sbjct: 230 Y----LLSIPIS-----C--------------------PLI---G-----VIQLAHYVVT 252

Query: 343 CKYERGFDNMIYVMGSD-------------HS-GYVKRLEAVAAAVSEKKAQINVLLCEL 388
            K          ++G               HS G V      A A++E            
Sbjct: 253 AK----------LLGFTPGELRSYLKGATGHSQGLV-----TAVAIAE------------ 285

Query: 389 VRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR---KNS----ELLDFDFCK 441
                                         +DS      W     +      +L      
Sbjct: 286 ------------------------------TDS------WESFFVSVRKAITVL------ 303

Query: 442 VKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVH 501
                     F++     RC     +A           +P   +P               
Sbjct: 304 ----------FFIGV---RCY----EA-----------YPNTSLP--------------- 320

Query: 502 LAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRL-----------RFVQA 550
               P ++E                D  S+ +     G  +P L            +V  
Sbjct: 321 ----PSILE----------------D--SLENNE---GVPSPMLSISNLTQEQVQDYVNK 355

Query: 551 NNRKLTMMRLQLVHAVASIINSGLNIIGVESP 582
            N  L   +        S++N   N++ V  P
Sbjct: 356 TNSHLPAGK----QVEISLVNGAKNLV-VSGP 382



 Score = 38.4 bits (89), Expect = 0.005
 Identities = 62/283 (21%), Positives = 109/283 (38%), Gaps = 82/283 (28%)

Query: 6    DFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCA-H------GHLSTN-AAMILSRPL 57
            D  +R  N+ K+          ILD IVI  P +   H        +  N +AMI     
Sbjct: 1644 DVWNRADNHFKD-----TYGFSILD-IVINNPVNLTIHFGGEKGKRIRENYSAMIFE--- 1694

Query: 58   GLDPLTIAELIVARIKIDPDVDS-----VFIAGKGFINLYLSPSYLRKILSSIVVSGIEY 112
                 TI +  +   KI  +++       F + KG ++   +  + +  L+ +  +  E 
Sbjct: 1695 -----TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS---ATQFTQPALTLMEKAAFE- 1745

Query: 113  GRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGD-----TLASLMAFSGYEVTREYYI 167
              +L  KG       + A+ T     GH     +G+     +LA +M+            
Sbjct: 1746 --DLKSKG------LIPADAT---FAGHS----LGEYAALASLADVMS------------ 1778

Query: 168  NDAGAQINTLALSVFWR--YQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFP 225
                  I +L   VF+R    Q     D +L    Y G+   + G+ +A  +S E L + 
Sbjct: 1779 ------IESLVEVVFYRGMTMQVAVPRD-ELGRSNY-GMIAINPGR-VAASFSQEALQYV 1829

Query: 226  EEK------WLPIVKDYSVQAMMKIIRDDLKALNIQHDI--FI 260
             E+      WL  + +Y+V+    +   DL+AL+   ++  FI
Sbjct: 1830 VERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFI 1872



 Score = 33.0 bits (75), Expect = 0.20
 Identities = 50/366 (13%), Positives = 96/366 (26%), Gaps = 150/366 (40%)

Query: 253 NIQHDIFISE----------DDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKC 302
           +++H + +            + F++  P P     +  A            P +      
Sbjct: 15  SLEHVLLVPTASFFIASQLQEQFNKILPEPT----EGFAAD--------DEPTTPA---- 58

Query: 303 DMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYF-AADLAYFKCKYERGFDNMIYVMGSDHS 361
                +L+ +   +G           G +       L  F+  Y  G D  I      H+
Sbjct: 59  -----ELVGK--FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--I------HA 103

Query: 362 GYVKRLEA-VAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSD 420
               +L       + + K        EL++ Y     I     A      +         
Sbjct: 104 -LAAKLLQENDTTLVKTK--------ELIKNY-----ITARIMAKRPFDKKS-------- 141

Query: 421 SVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFR-QAKDIFPDLDFDL 479
                     NS L        +  ++           A    IF  Q            
Sbjct: 142 ----------NSALFR---AVGEGNAQ---------LVA----IFGGQG----------- 164

Query: 480 FPRNVIPQESEFDTSELQLIVHLAEYPRVIEN--ATIAQEPYKL------AFYLY----D 527
              N    +  F+  EL+ +     Y  ++ +     A+   +L      A  ++    +
Sbjct: 165 ---NT---DDYFE--ELRDLYQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214

Query: 528 LASVFHGHWSHGREN-PRLRFVQANNRKLTM---MRL----QLVHAVASIINSGLNIIGV 579
           +       W     N P   ++      L++     L    QL H V +    G      
Sbjct: 215 ILE-----WLENPSNTPDKDYL------LSIPISCPLIGVIQLAHYVVTAKLLGF----- 258

Query: 580 ESPNEM 585
            +P E+
Sbjct: 259 -TPGEL 263



 Score = 29.9 bits (67), Expect = 1.7
 Identities = 35/186 (18%), Positives = 47/186 (25%), Gaps = 89/186 (47%)

Query: 7   FSSRLKNYLKEIDCKIKVEKKILD--RIVI-ERPRDCAHGHLSTNAAMILSRPLGLDP-- 61
            +  L+        K K     LD  RI   ER    ++  L   +           P  
Sbjct: 389 LNLTLR--------KAKAPSG-LDQSRIPFSERKLKFSNRFLPVAS-----------PFH 428

Query: 62  ---LTIAELIVARIKIDPDVDSVFIAGKGF-INLYLSPSY-------LRK----ILSSIV 106
              L  A      I  D   ++V    K   I     P Y       LR     I   IV
Sbjct: 429 SHLLVPAS---DLINKDLVKNNVSFNAKDIQI-----PVYDTFDGSDLRVLSGSISERIV 480

Query: 107 ----------------------------VSGIEYG----RNLIGKGTKVNIEFVSANPTG 134
                                        SG+  G    RN  G G +V    + A   G
Sbjct: 481 DCIIRLPVKWETTTQFKATHILDFGPGGASGL--GVLTHRNKDGTGVRV----IVA---G 531

Query: 135 PMHVGH 140
            + +  
Sbjct: 532 TLDINP 537


>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein
           biosynthesis, ligase, aminoacyl- synthetase; HET: ADN
           CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
          Length = 524

 Score = 38.5 bits (89), Expect = 0.004
 Identities = 58/387 (14%), Positives = 106/387 (27%), Gaps = 77/387 (19%)

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEVT-----------------------REY-- 165
            P G  H+GH    +  D +A      GY+V                         E   
Sbjct: 22  YPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELAR 81

Query: 166 -YINDAGAQINTLALS---------------VFWRYQQALYNNDSDLPEGYYPGVYLKHV 209
              +        L +S                   +++       D+    Y G Y    
Sbjct: 82  RNSDVFQRLQEKLNISFDRFIRTSDADHYEASKAIWKRMADAG--DIYLDAYKGWYSIRD 139

Query: 210 GKELADKYSSELLNFPEEKWL---PIVKDYSVQAMMKI--IRDDLKALNIQHDIFISEDD 264
            +   +  ++E  +          P+          ++    D L AL  +H  FI  D 
Sbjct: 140 ERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGPDA 199

Query: 265 FHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPL 324
                 S +   + +L+     ++  +P P                              
Sbjct: 200 RRNEIVSFVSGGLKDLSISRTTFDWGVPVP----------------------DHPDHVMY 237

Query: 325 LKSDGSYTYFAADLAYFKCK--YERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQIN 382
           +  D    Y             + R +   ++++G D      R   V        A + 
Sbjct: 238 VWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDII----RFHTVYWPAFLMSAGLP 293

Query: 383 VLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKV 442
           +        +      KMSK  G+ +   ++VD  G D VR+ +L R+     D  + + 
Sbjct: 294 LPKRIFAHGWLLNRGEKMSKSIGNVVDPVNLVDTFGLDQVRYFLL-REVPFGQDGSYNED 352

Query: 443 KEQSKENPVFYVQYAYARCRSIFRQAK 469
               + N     +      RS+   AK
Sbjct: 353 AIIGRVNADLANELGNLAQRSLSMVAK 379


>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
           coiled coil, riken structural genomics/proteomics
           initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
           SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
           1iyw_A
          Length = 862

 Score = 38.4 bits (88), Expect = 0.004
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 4/103 (3%)

Query: 327 SDGSYTYFAADLAYFKCKYERGFDNMIYVMGSD-HSGYVKRLEAVAAAVSEKKAQINVLL 385
           S   +              +  +   + V G D    +V R+E        ++       
Sbjct: 458 SSALWPLSTLGWPEETEDLKAFYPGDVLVTGYDILFLWVSRMEVSGYHFMGERPFKT--- 514

Query: 386 CELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLW 428
             L  L  D    KMSK  G+ I    +V+  G+D++RF +++
Sbjct: 515 VLLHGLVLDEKGQKMSKSKGNVIDPLEMVERYGADALRFALIY 557



 Score = 32.2 bits (72), Expect = 0.37
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161
           N TG +H+GH     + D L       G+E 
Sbjct: 44  NVTGSLHMGHALDNSLQDALIRYKRMRGFEA 74


>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing
           tRNA synthetase, double-sieve, ligase/RNA, mupiroci;
           HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1
           b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
          Length = 917

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 13/180 (7%)

Query: 391 LYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENP 450
              DG   KMSK  G+ I    VV + G+D  R  +        +      +K+ S    
Sbjct: 587 FVMDGEGKKMSKSLGNVIVPDQVVKQKGADIARLWVSSTDYLADVRISDEILKQTSD--- 643

Query: 451 VFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIE 510
                  Y + R+  R           D  P      ESE    +  L+  L E+     
Sbjct: 644 ------DYRKIRNTLRF----MLGNINDFNPDTDSIPESELLEVDRYLLNRLREFTASTI 693

Query: 511 NATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASII 570
           N     +   +   + +  +V   ++        L   Q ++     M+  L   +  + 
Sbjct: 694 NNYENFDYLNIYQEVQNFINVELSNFYLDYGKDILYIEQRDSHIRRSMQTVLYQILVDMT 753



 Score = 31.1 bits (69), Expect = 0.61
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161
              G +H+GH    ++ D +       G+  
Sbjct: 58  YANGNLHMGHALNKILKDFIVRYKTMQGFYA 88


>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase,
           structural genomics, NPPSFA; 1.80A {Thermus
           thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A
           2d54_A
          Length = 500

 Score = 37.4 bits (85), Expect = 0.008
 Identities = 37/324 (11%), Positives = 86/324 (26%), Gaps = 36/324 (11%)

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTR--------------------------E 164
                 H+GH    VV D LA      GY                              +
Sbjct: 13  YVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVD 72

Query: 165 YYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNF 224
                     + L ++     +       +           +     E  D Y  E    
Sbjct: 73  RVSGRFKRAWDLLGIAYDDFIR-------TTEERHKKVVQLVLKKVYEAGDIYYGEYEGL 125

Query: 225 PEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQG 284
                     +  +   +  I         + + F   + +       I++  D +  +G
Sbjct: 126 YCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEG 185

Query: 285 YVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCK 344
           Y  E +    +          + ++ +   +  D+     +  D    Y +A        
Sbjct: 186 YRNEVLAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEA 245

Query: 345 YERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRA 404
           Y   + +  +++G D               +      ++ +   +          MSK  
Sbjct: 246 YRTFWPHAWHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPDGRK---MSKTL 302

Query: 405 GDFITLRHVVDEVGSDSVRFMMLW 428
           G+ +    ++++ G D++R+ +L 
Sbjct: 303 GNVVDPFALLEKYGRDALRYYLLR 326


>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken
           structural genomics/proteomics initiative, RSGI; 2.50A
           {Thermus thermophilus HB8} SCOP: a.27.1.1 b.51.1.1
           c.26.1.1 PDB: 1jzq_A* 1jzs_A*
          Length = 821

 Score = 36.5 bits (83), Expect = 0.018
 Identities = 28/229 (12%), Positives = 60/229 (26%), Gaps = 11/229 (4%)

Query: 265 FHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPL 324
           +          I      +    + +  P          ++       +      V    
Sbjct: 459 WVCQACGKEEAIGSFQELKARATKPLPEPFDPHRPYVDQVELACACGGTMRRVPYVIDVW 518

Query: 325 LKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHS-GYVKRLEAVAAAVSEKKAQINV 383
             S              +  +   F       G D + G+   L  +   +    A  NV
Sbjct: 519 YDSGAMPFASLHYPFEHEEVFRESFPADFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNV 578

Query: 384 LLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVK 443
           +   L+    D    KMSK  G+ +    ++ + G+D++R+ +      E         +
Sbjct: 579 ICHGLIL---DEKGQKMSKSKGNVVDPWDIIRKFGADALRWYIYVSAPPE-------ADR 628

Query: 444 EQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFD 492
                     V+  +    +++            DL       +  E D
Sbjct: 629 RFGPNLVRETVRDYFLTLWNVYSFFVTYANLDRPDLKNPPPPEKRPEMD 677



 Score = 31.9 bits (71), Expect = 0.44
 Identities = 8/31 (25%), Positives = 9/31 (29%)

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161
              G  HVGH +     D         GY  
Sbjct: 48  TANGLPHVGHAQARSYKDLFPRYKTMRGYYA 78


>2csx_A Methionyl-tRNA synthetase; ligase, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus}
           PDB: 2ct8_A*
          Length = 497

 Score = 36.1 bits (82), Expect = 0.024
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTR 163
                 H+GH    +  DT+A       Y+V  
Sbjct: 15  YVNDVPHLGHAYTTIAADTIARYYRLRDYDVFF 47


>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase,
           tRNA ligase metrs, methionine, translation, ATP-binding;
           HET: ME8; 2.00A {Leishmania major}
          Length = 564

 Score = 34.3 bits (78), Expect = 0.082
 Identities = 23/187 (12%), Positives = 42/187 (22%), Gaps = 75/187 (40%)

Query: 132 PTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYN 191
                H+GH    ++ D L       G EV                              
Sbjct: 37  VNASPHIGHVYSTLIVDVLGRYHRVKGEEV---------------------------FVM 69

Query: 192 NDSD---LP-------EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAM 241
             +D            +G  P         +     S                       
Sbjct: 70  TGTDEHGQKVAEAAAKQGVSP--------MDFTTSVS----------------------- 98

Query: 242 MKIIRDDLKALNIQHDIFI--SEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTT 299
               +   + +N   + FI  +     +     ++DI   LA +G +Y G      S + 
Sbjct: 99  -SEFKQCFQEMNYDMNYFIRTTNPTHEKL----VQDIWKKLAAKGDIYLGKYEGWYSVSD 153

Query: 300 QKCDMDR 306
           +     +
Sbjct: 154 ESFLTAQ 160


>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase
           2; protein-RNA complex, ligase-RNA complex; HET: GSU;
           3.37A {Thermotoga maritima}
          Length = 592

 Score = 33.8 bits (77), Expect = 0.12
 Identities = 33/227 (14%), Positives = 62/227 (27%), Gaps = 49/227 (21%)

Query: 237 SVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIR---------DIIDNLARQGYVY 287
           S +   + I + L+   +  D    E     GD  P R         +  + L      Y
Sbjct: 176 SSREYEQQILESLRWCGLDWD----EGPDIGGDFGPYRQSERLEIYREYAEKLVEDKRAY 231

Query: 288 --------------EGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDV------------D 321
                              P + K        + ++L   T   D +            D
Sbjct: 232 YVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLED 291

Query: 322 RPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQI 381
             ++KS+G  TY   + A     +     ++    G DH     +   +  A   +    
Sbjct: 292 FIIMKSNGFPTY---NFAVVVDDHLMRISHVF--RGEDHLSNTPKQLMIYEAFGWEAPV- 345

Query: 382 NVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLW 428
                  + L        +SKR G         + + S ++   +  
Sbjct: 346 ----FMHIPLILGSDRTPLSKRHGATSVEHFRREGILSRALMNYLAL 388



 Score = 31.1 bits (70), Expect = 0.69
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 131 NPTGPMHVGHCRCAV 145
           +PTG +HVG  R A+
Sbjct: 137 SPTGHLHVGGARTAL 151


>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino
           acid, aminoacylation, trnaLeu, structural genomics;
           2.05A {Pyrococcus horikoshii}
          Length = 810

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 386 CELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDF 439
              V  +      KMSK  G+ +     ++E G+D VR  ++        DFD+
Sbjct: 637 GIAVNGFGTLEGQKMSKSKGNVLNFIDAIEENGADVVRLYIM-SLAEHDSDFDW 689



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161
             +G +HVGH R   + D +A      GY V
Sbjct: 44  YLSGHLHVGHARTYTIPDVIARFKRMQGYNV 74


>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
           {Methanothermobacter thermautotrophicusorganism_taxid}
          Length = 553

 Score = 31.9 bits (72), Expect = 0.35
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 131 NPTGPMHVGHCRCAVVGDTLA 151
           NP+GP+H+GH R A++    A
Sbjct: 104 NPSGPLHIGHARAAILNHEYA 124


>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A
           {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
          Length = 722

 Score = 31.8 bits (71), Expect = 0.42
 Identities = 6/54 (11%), Positives = 16/54 (29%), Gaps = 6/54 (11%)

Query: 238 VQAMMKIIRDDLKALNIQHDIFI--SEDDFHRGDPSPIRDIIDNLARQGYVYEG 289
           V    + I+   +   I  D F        ++      ++        G++ + 
Sbjct: 71  VDEFHEQIKITFQRAKISFDFFGRTELPIHYKL----SQEFFLKAYENGHLVKK 120



 Score = 29.1 bits (64), Expect = 2.6
 Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 1/32 (3%)

Query: 131 NPTGPMHVGHCR-CAVVGDTLASLMAFSGYEV 161
              GP+H GH     +  D     +   G +V
Sbjct: 12  YANGPIHAGHLAGAYLPADIFVRYLRLKGEDV 43


>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, ligase/RNA complex; 3.21A {Pyrococcus
           horikoshii OT3}
          Length = 967

 Score = 31.5 bits (70), Expect = 0.45
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161
             +G +HVGH R   + D +A      GY V
Sbjct: 44  YLSGHLHVGHARTYTIPDVIARFKRMQGYNV 74


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.5 bits (70), Expect = 0.52
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 6/31 (19%)

Query: 226 EEKWLPIVKDYSVQAMMKIIRDD-LKALNIQ 255
           E++ L   K   +QA +K+  DD   AL I+
Sbjct: 18  EKQAL---K--KLQASLKLYADDSAPALAIK 43



 Score = 30.7 bits (68), Expect = 0.97
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 6/30 (20%)

Query: 376 EKKAQINVLLCELVRLYR-DGMP---IKMS 401
           EK+A +  L   L +LY  D  P   IK +
Sbjct: 18  EKQA-LKKLQASL-KLYADDSAPALAIKAT 45



 Score = 28.4 bits (62), Expect = 5.0
 Identities = 8/24 (33%), Positives = 11/24 (45%), Gaps = 9/24 (37%)

Query: 187 QA---LYNNDSDLPEGYYPGVYLK 207
           QA   LY +DS       P + +K
Sbjct: 26  QASLKLYADDSA------PALAIK 43


>1xd7_A YWNA; structural genomics, protein structure initiative, winged
           helix DNA binding, hypothetical protein, PSI; 2.30A
           {Bacillus subtilis subsp} SCOP: a.4.5.55
          Length = 145

 Score = 31.5 bits (71), Expect = 0.58
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 10/61 (16%)

Query: 50  AMILSRPLGLDPLTIAELIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSG 109
           ++I SR      L +A  I++ I +D    S  IA     ++  +P  +R+++S +  + 
Sbjct: 2   SLINSR------LAVAIHILSLISMDEKTSSEIIAD----SVNTNPVVVRRMISLLKKAD 51

Query: 110 I 110
           I
Sbjct: 52  I 52


>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein
           biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus}
           PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
          Length = 878

 Score = 31.3 bits (70), Expect = 0.61
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161
            P+G +H+GH +   +GD LA      GYEV
Sbjct: 43  YPSGDLHMGHLKNYTMGDVLARFRRMQGYEV 73


>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E.
           coli, complex, ligase/RNA complex; HET: QSI; 2.25A
           {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P*
           1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A*
           1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
          Length = 553

 Score = 30.8 bits (69), Expect = 0.91
 Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLA 151
           GK T V+  F    P G +H+GH +   +   +A
Sbjct: 22  GKHTTVHTRF-PPEPNGYLHIGHAKSICLNFGIA 54


>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex,
           aminoacyl-tRNA synthetase, ATP-binding, ligase,
           nucleotide-binding; HET: GSU; 2.00A {Thermotoga
           maritima}
          Length = 488

 Score = 30.7 bits (69), Expect = 0.94
 Identities = 8/15 (53%), Positives = 11/15 (73%)

Query: 131 NPTGPMHVGHCRCAV 145
           +PTG +HVG  R A+
Sbjct: 33  SPTGHLHVGGARTAL 47


>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase,
           structural genomics, unknown function; 1.50A
           {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A*
          Length = 298

 Score = 30.4 bits (68), Expect = 1.0
 Identities = 6/21 (28%), Positives = 10/21 (47%)

Query: 131 NPTGPMHVGHCRCAVVGDTLA 151
           +P+G +H G    A+     A
Sbjct: 13  SPSGELHFGSLIAALGSYLQA 33


>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
           aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
           radiodurans}
          Length = 851

 Score = 30.4 bits (68), Expect = 1.0
 Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 118 GKGTKVNIEFVSANPTGPMHVGHCRCAV 145
           GK  +V   F   +P+G  H+GH   ++
Sbjct: 62  GKYPRVVTRF-PPDPSGYAHLGHVFASL 88


>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C
           region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC;
           2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2
           b.1.1.2
          Length = 444

 Score = 30.5 bits (68), Expect = 1.1
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 37/115 (32%)

Query: 249 LKALNIQHDIFISEDDF-----HRGDPSPIRDIIDN---LARQGYVYEGILPPPKSKTTQ 300
           + AL IQH  ++S  +F     ++  P+PI   I       R   VY  +LPPP+ + T+
Sbjct: 304 VSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVY--VLPPPEEEMTK 361

Query: 301 K--------------------CDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFA 335
           K                     +  + +L +++T        P+L SDGSY  ++
Sbjct: 362 KQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT-------EPVLDSDGSYFMYS 409


>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase,
           ATP-binding, nucleotide- binding, protein biosynthesis;
           HET: GLU; 2.45A {Synechococcus elongatus}
          Length = 492

 Score = 30.2 bits (67), Expect = 1.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 131 NPTGPMHVGHCRCAVVGDTLA 151
           +PTG +H+G  R AV     A
Sbjct: 9   SPTGNLHIGTARTAVFNWLYA 29


>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate- tRNA
           ligase 1, glurs 1, structural genomics; 2.34A
           {Thermotoga maritima}
          Length = 481

 Score = 30.1 bits (67), Expect = 1.2
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 131 NPTGPMHVGHCRCAVVGDTLA 151
           +PTG +HVG  R A+     A
Sbjct: 21  SPTGFLHVGGARTALFNFLFA 41


>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA
           aminoacylation, protein biosynthesis, aminoacyl-tRNA
           synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
          Length = 498

 Score = 29.9 bits (66), Expect = 1.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 131 NPTGPMHVGHCRCAVVGDTLA 151
           +PTG  HVG  R A+     A
Sbjct: 14  SPTGTPHVGLVRTALFNWAYA 34


>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural
           genomics/proteomics initiative, RSGI, structural
           genomics, ligase; HET: GLU ATP; 1.80A {Thermus
           thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A*
           1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A*
           1g59_A 1gln_A
          Length = 468

 Score = 29.7 bits (66), Expect = 2.0
 Identities = 8/21 (38%), Positives = 10/21 (47%)

Query: 131 NPTGPMHVGHCRCAVVGDTLA 151
           +PTG  HVG    A+     A
Sbjct: 9   SPTGDPHVGTAYIALFNYAWA 29


>2cp6_A Restin; microtubule binding, cytoskeleton associated protein,
           structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
           b.34.10.1
          Length = 172

 Score = 29.3 bits (65), Expect = 2.4
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 4/36 (11%)

Query: 313 STMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERG 348
               G ++D PL K+DG+     A   YF+C+ + G
Sbjct: 66  GEWCGVELDEPLGKNDGAV----AGTRYFQCQPKYG 97


>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; 2.20A {Aeropyrum pernix}
          Length = 364

 Score = 28.7 bits (63), Expect = 3.5
 Identities = 7/34 (20%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 107 VSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGH 140
           +   E  + L+  G ++   ++   P+G  H+G 
Sbjct: 20  IVTEEELKGLLASGARIKG-YIGYEPSGVAHIGW 52


>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
           regulator, histone inhibitor binding, methylation,
           nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
           {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
           2xas_A* 2com_A
          Length = 852

 Score = 28.8 bits (63), Expect = 3.6
 Identities = 9/36 (25%), Positives = 14/36 (38%)

Query: 266 HRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQK 301
           +  D   +  +   L R G +  GI    K   T+K
Sbjct: 242 YNSDTVLVHRVHSYLERHGLINFGIYKRIKPLPTKK 277


>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
           HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
          Length = 359

 Score = 27.7 bits (61), Expect = 7.3
 Identities = 7/67 (10%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 6   DFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIA 65
            F   +++   +     K      +               +   A + + P+ ++ L   
Sbjct: 96  LFKDHVEDVNFQPV---KYSALTSNNEECTAVVARGGTANAIRIAAVDN-PVNVNKLAQD 151

Query: 66  ELIVARI 72
            + +A+I
Sbjct: 152 SINIAQI 158


>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton
           associated protein, KIAA0639, kinesin-like protein
           gakin, structural genomics; NMR {Homo sapiens} SCOP:
           b.34.10.1
          Length = 100

 Score = 27.9 bits (62), Expect = 7.4
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 4/37 (10%)

Query: 312 RSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERG 348
             T VG ++D P  K+DGS         YF+C    G
Sbjct: 50  EGTWVGVELDLPSGKNDGSI----GGKQYFRCNPGYG 82


>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton
           associated protein, structural genomics, NPPSFA; NMR
           {Homo sapiens} SCOP: b.34.10.1
          Length = 95

 Score = 27.8 bits (62), Expect = 7.5
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 314 TMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERG 348
             VG ++D P  K+DGS       + YF C  ++G
Sbjct: 45  QWVGVELDEPEGKNDGSV----GGVRYFICPPKQG 75


>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG,
           structural genomics, midwest center for structural
           genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
          Length = 295

 Score = 27.6 bits (60), Expect = 7.8
 Identities = 24/158 (15%), Positives = 48/158 (30%), Gaps = 6/158 (3%)

Query: 230 LPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEG 289
           L  V   S+  + K I+D L     + D    +     GD S +  +   L   G     
Sbjct: 8   LQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVV 67

Query: 290 ILPPPKSKTTQKCDMDRKQLLFRSTM-VGDDVDRPLLKSDGSYTYFAADLAY-----FKC 343
            +  P ++       D   ++   T  +G ++ + L K  G+ T  +             
Sbjct: 68  GIATPAAQGLASATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVSDHNPAQQQVELIK 127

Query: 344 KYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQI 381
                   +  +  S       ++E   A   +    +
Sbjct: 128 ALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTV 165


>1nex_A Centromere DNA-binding protein complex CBF3 subunit D; WD 40
           domain, phospho-peptide complex, E3 ubiquitin ligase,
           ligase, cell cycle; HET: TPO; 2.70A {Saccharomyces
           cerevisiae} SCOP: a.157.1.1 d.42.1.1
          Length = 169

 Score = 27.6 bits (61), Expect = 7.9
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 1/68 (1%)

Query: 440 CKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLI 499
             V   S E   F V    A    + +   +   D D +     V+P      +S LQ +
Sbjct: 7   SNVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPV-PNVRSSVLQKV 65

Query: 500 VHLAEYPR 507
           +  AE+ R
Sbjct: 66  IEWAEHHR 73


>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation,
           structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus
           horikoshii OT3}
          Length = 375

 Score = 27.5 bits (60), Expect = 8.3
 Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 98  LRKILSSIV--VSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGH 140
           +  +L      V  +E  R+L   G  +   ++    +G +H+G 
Sbjct: 7   INLVLKKPTEEVLTVENLRHLFEIGAPLQH-YIGFEISGYIHLGT 50


>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
           enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
           SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
           1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
           1k62_A
          Length = 468

 Score = 27.5 bits (60), Expect = 8.9
 Identities = 9/46 (19%), Positives = 19/46 (41%)

Query: 37  PRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDSVF 82
           P   AH        +  ++ + ++ L++ +L     +   DV  VF
Sbjct: 385 PFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVF 430


>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated
           protein, CYLN2, structural genomics, NPPSFA; NMR {Homo
           sapiens} SCOP: b.34.10.1
          Length = 84

 Score = 27.4 bits (61), Expect = 9.1
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 4/35 (11%)

Query: 314 TMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERG 348
              G ++D PL K+DG+     A   YF+C  + G
Sbjct: 36  EWCGVELDEPLGKNDGAV----AGTRYFQCPPKFG 66


>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, aspartase;
           2.44A {Escherichia coli} SCOP: a.127.1.1
          Length = 457

 Score = 27.2 bits (59), Expect = 9.3
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 37  PRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDSVF 82
           P   AH  +       + +   L+ L ++EL      ID DV  + 
Sbjct: 380 PFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPIL 425


>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET:
          FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A
          2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
          Length = 119

 Score = 27.5 bits (61), Expect = 9.6
 Identities = 4/27 (14%), Positives = 19/27 (70%)

Query: 4  FADFSSRLKNYLKEIDCKIKVEKKILD 30
          + + +S+ ++ LK+++ +++ +K ++ 
Sbjct: 73 YQELASKYEDALKKLEAEMEQQKAVIS 99


>2ije_S Guanine nucleotide-releasing protein; rasgrf1, CDC25 domain, RAS
           guanine nucleotide releasing factor, RAS-specific
           nucleotide exchange factor; 2.20A {Mus musculus}
          Length = 240

 Score = 27.3 bits (60), Expect = 9.7
 Identities = 18/130 (13%), Positives = 44/130 (33%), Gaps = 20/130 (15%)

Query: 342 KCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMS 401
            C+    ++ ++ +  S +   + RL+     VS++   +   L +LV            
Sbjct: 86  ICRCLHNYNAVLEITSSINRSAIFRLKKTWLKVSKQTKSLLDKLQKLVSSDG-------- 137

Query: 402 KRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARC 461
                F  LR  +       V ++ ++  +   ++       E    N        +++ 
Sbjct: 138 ----RFKNLRESLRNCDPPCVPYLGMYLTDLVFIEEGTPNYTEDGLVN--------FSKM 185

Query: 462 RSIFRQAKDI 471
           R I    ++I
Sbjct: 186 RMISHIIREI 195


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.322    0.139    0.412 

Gapped
Lambda     K      H
   0.267   0.0434    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 5,267,547
Number of extensions: 255143
Number of successful extensions: 810
Number of sequences better than 10.0: 1
Number of HSP's gapped: 777
Number of HSP's successfully gapped: 77
Length of query: 586
Length of database: 5,693,230
Length adjustment: 98
Effective length of query: 488
Effective length of database: 3,317,318
Effective search space: 1618851184
Effective search space used: 1618851184
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)