BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] (586 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 586 Score = 1214 bits (3141), Expect = 0.0, Method: Compositional matrix adjust. Identities = 586/586 (100%), Positives = 586/586 (100%) Query: 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLD 60 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLD Sbjct: 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLD 60 Query: 61 PLTIAELIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKG 120 PLTIAELIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKG Sbjct: 61 PLTIAELIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKG 120 Query: 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALS 180 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALS Sbjct: 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALS 180 Query: 181 VFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQA 240 VFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQA Sbjct: 181 VFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQA 240 Query: 241 MMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQ 300 MMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQ Sbjct: 241 MMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQ 300 Query: 301 KCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDH 360 KCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDH Sbjct: 301 KCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDH 360 Query: 361 SGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSD 420 SGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSD Sbjct: 361 SGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSD 420 Query: 421 SVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLF 480 SVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLF Sbjct: 421 SVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLF 480 Query: 481 PRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGR 540 PRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGR Sbjct: 481 PRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGR 540 Query: 541 ENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEMS 586 ENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEMS Sbjct: 541 ENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEMS 586 >gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 869 Score = 37.7 bits (86), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 15/30 (50%), Positives = 20/30 (66%) Query: 132 PTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161 P+G +H+GH R V+GD +A M SGY V Sbjct: 45 PSGNIHMGHLRNYVIGDVVARFMRASGYSV 74 >gi|254780289|ref|YP_003064702.1| RNA polymerase sigma factor RpoD [Candidatus Liberibacter asiaticus str. psy62] Length = 682 Score = 33.5 bits (75), Expect = 0.009, Method: Compositional matrix adjust. Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 3/65 (4%) Query: 199 GYYPGVYL-KHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHD 257 G V+L +H G+EL + S +FPE +W V V +++K IR+++K+++++ Sbjct: 364 GIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKNFVA-CEVDSILK-IRNEIKSISVETG 421 Query: 258 IFISE 262 I ISE Sbjct: 422 ISISE 426 >gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 947 Score = 29.3 bits (64), Expect = 0.17, Method: Compositional matrix adjust. Identities = 14/34 (41%), Positives = 21/34 (61%) Query: 391 LYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRF 424 L RD KMSK G+ + V+D+ G+D++RF Sbjct: 584 LVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRF 617 >gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 963 Score = 28.9 bits (63), Expect = 0.26, Method: Compositional matrix adjust. Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%) Query: 353 IYVMGSD-HSGYVKR--LEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFIT 409 +Y+ GSD H G+ + LE+ A S L+ + +G KMSK G+ + Sbjct: 589 VYLEGSDQHRGWFQHSLLESCATRGS---TPFTSLITHGFSVDENGE--KMSKSKGNVVF 643 Query: 410 LRHVVDEVGSDSVRFMMLWRKNSELLD 436 ++ E G+D +R+ W NS+ D Sbjct: 644 PEEIISESGADVLRY---WAVNSDYHD 667 >gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 461 Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%) Query: 399 KMSKRAGDFITLRHVVD--EVGSDS-----VRFMMLWRKNSELLDFDFCKVKE 444 KMSK G+FIT+ +++ + G S +R ML E +DF ++ E Sbjct: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329 >gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62] Length = 370 Score = 25.8 bits (55), Expect = 1.9, Method: Compositional matrix adjust. Identities = 10/16 (62%), Positives = 12/16 (75%) Query: 80 SVFIAGKGFINLYLSP 95 SVF+ GKGFI Y+ P Sbjct: 293 SVFLGGKGFIKGYMVP 308 >gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str. psy62] Length = 652 Score = 24.6 bits (52), Expect = 4.1, Method: Compositional matrix adjust. Identities = 8/18 (44%), Positives = 13/18 (72%) Query: 121 TKVNIEFVSANPTGPMHV 138 T++N+ F+SAN G H+ Sbjct: 274 TEINLPFISANSAGAQHL 291 >gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus Liberibacter asiaticus str. psy62] Length = 386 Score = 24.6 bits (52), Expect = 5.1, Method: Compositional matrix adjust. Identities = 12/30 (40%), Positives = 19/30 (63%) Query: 81 VFIAGKGFINLYLSPSYLRKILSSIVVSGI 110 VF+ G + L PS+ RK L+SI++ G+ Sbjct: 122 VFLTGSILLTPMLIPSFPRKFLNSILLFGL 151 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.322 0.139 0.412 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 379,199 Number of Sequences: 1233 Number of extensions: 15949 Number of successful extensions: 42 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 30 Number of HSP's gapped (non-prelim): 14 length of query: 586 length of database: 328,796 effective HSP length: 79 effective length of query: 507 effective length of database: 231,389 effective search space: 117314223 effective search space used: 117314223 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 41 (20.4 bits)