HHsearch alignment for GI: 254780286 and conserved domain: PRK13480

>PRK13480 3'-5' exoribonuclease YhaM; Provisional.
Probab=96.81  E-value=0.0019  Score=45.20  Aligned_cols=137  Identities=17%  Similarity=0.212  Sum_probs=76.3

Q ss_pred             CCCEEEECCCCCCC---CCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC---C
Q ss_conf             57478716999870---662088899999999999883-9998899999988862899886547899999973125---5
Q gi|254780286|r   58 DKTQVFFHRQRDHY---RTRLMHTIEVSQIARSLARAL-RIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG---G  130 (410)
Q Consensus        58 ~KTQVf~~~~~d~~---rtRLtHslEVa~i~rsi~~~l-~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~---g  130 (410)
T Consensus       141 ~~f~~~PAA~~~HHay~gGLLEHtlsv~~la~~l~~~Yp~ldrDLllaGalLHDIGKv----------~El~~~~~~~yT  210 (314)
T PRK13480        141 EEFLDYPAATKNHHEFVSGLAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLGKV----------RELSGPVSTTYT  210 (314)
T ss_pred             HHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----------HHHCCCCCCCCC
T ss_conf             9998397888604133226999999999999999976454479999999999877778----------763278788867


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH----HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             45776577887543211467010002478887----76347577886444552100145776676402231336673217
Q gi|254780286|r  131 FDHNIQSFRIVTELECSYADFDGINLTWETLE----GLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQ  206 (410)
Q Consensus       131 FegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~----~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~  206 (410)
T Consensus       211 ~~G~LlGHi~lg~~~v~-~~a~~l~~~~e~~~~L~HiILSHHG~~E~---------------------GSPv~P~t~EA~  268 (314)
T PRK13480        211 LEGNLLGHISIMVNEIG-KAADELQIDGEEVLILQHMVLSHHGKAEW---------------------GSPKPPLVKEAE  268 (314)
T ss_pred             CCCEECCCHHHHHHHHH-HHHHHHCCCHHHHHHHHHEEECCCCCCCC---------------------CCCCCCCCHHHH
T ss_conf             76844384999999999-99987099978999876436636996668---------------------999999989999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q ss_conf             98656554432120798998
Q gi|254780286|r  207 VAAIADDIAYDAHDIDDGVR  226 (410)
Q Consensus       207 iveaADDIAY~~hDlEDai~  226 (410)
T Consensus       269 ilh~~D~lDAk~~~~~~al~  288 (314)
T PRK13480        269 ILHYIDNIDAKMNMMDRALK  288 (314)
T ss_pred             HHHHHHHHCCHHHHHHHHHH
T ss_conf             99978873538999999981