HHsearch alignment for GI: 254780286 and conserved domain: PRK13480
>PRK13480 3'-5' exoribonuclease YhaM; Provisional.
Probab=96.81 E-value=0.0019 Score=45.20 Aligned_cols=137 Identities=17% Similarity=0.212 Sum_probs=76.3
Q ss_pred CCCEEEECCCCCCC---CCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC---C
Q ss_conf 57478716999870---662088899999999999883-9998899999988862899886547899999973125---5
Q gi|254780286|r 58 DKTQVFFHRQRDHY---RTRLMHTIEVSQIARSLARAL-RIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG---G 130 (410)
Q Consensus 58 ~KTQVf~~~~~d~~---rtRLtHslEVa~i~rsi~~~l-~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~---g 130 (410)
T Consensus 141 ~~f~~~PAA~~~HHay~gGLLEHtlsv~~la~~l~~~Yp~ldrDLllaGalLHDIGKv----------~El~~~~~~~yT 210 (314)
T PRK13480 141 EEFLDYPAATKNHHEFVSGLAYHVVSMLRLAKSICDLYPSLNKDLLYAGIILHDLGKV----------RELSGPVSTTYT 210 (314)
T ss_pred HHHHHCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH----------HHHCCCCCCCCC
T ss_conf 9998397888604133226999999999999999976454479999999999877778----------763278788867
Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHH----HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf 45776577887543211467010002478887----76347577886444552100145776676402231336673217
Q gi|254780286|r 131 FDHNIQSFRIVTELECSYADFDGINLTWETLE----GLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQ 206 (410)
Q Consensus 131 FegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~----~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~ 206 (410)
T Consensus 211 ~~G~LlGHi~lg~~~v~-~~a~~l~~~~e~~~~L~HiILSHHG~~E~---------------------GSPv~P~t~EA~ 268 (314)
T PRK13480 211 LEGNLLGHISIMVNEIG-KAADELQIDGEEVLILQHMVLSHHGKAEW---------------------GSPKPPLVKEAE 268 (314)
T ss_pred CCCEECCCHHHHHHHHH-HHHHHHCCCHHHHHHHHHEEECCCCCCCC---------------------CCCCCCCCHHHH
T ss_conf 76844384999999999-99987099978999876436636996668---------------------999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 98656554432120798998
Q gi|254780286|r 207 VAAIADDIAYDAHDIDDGVR 226 (410)
Q Consensus 207 iveaADDIAY~~hDlEDai~ 226 (410)
T Consensus 269 ilh~~D~lDAk~~~~~~al~ 288 (314)
T PRK13480 269 ILHYIDNIDAKMNMMDRALK 288 (314)
T ss_pred HHHHHHHHCCHHHHHHHHHH
T ss_conf 99978873538999999981