Query gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 410 No_of_seqs 191 out of 1457 Neff 8.0 Searched_HMMs 33803 Date Wed Jun 1 12:05:00 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780286.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >3bg2_A DGTP triphosphohydrola 100.0 0 0 399.4 15.2 258 12-325 3-300 (300) 2 >2pgs_A Putative deoxyguanosin 100.0 0 0 377.8 11.3 220 14-325 3-239 (239) 3 >2dqb_A Deoxyguanosinetriphosp 100.0 1.5E-43 0 341.2 22.7 282 25-325 1-282 (282) 4 >2pgs_A Putative deoxyguanosin 100.0 9.3E-40 2.8E-44 313.1 3.0 175 111-402 1-207 (212) 5 >3irh_A HD domain protein; pho 100.0 3.4E-39 1E-43 309.0 -6.6 216 3-229 14-246 (247) 6 >2hek_A Hypothetical protein; 100.0 1.3E-34 3.7E-39 275.2 -3.2 201 35-235 10-220 (221) 7 >3bg2_A DGTP triphosphohydrola 100.0 2.6E-30 7.6E-35 243.3 6.0 74 326-399 61-142 (144) 8 >2q14_A Phosphohydrolase; BT42 99.9 1.4E-26 4E-31 215.8 -2.0 147 23-169 3-184 (190) 9 >2pjq_A Uncharacterized protei 99.8 1.2E-21 3.6E-26 179.2 5.1 187 43-235 2-189 (231) 10 >2dqb_A Deoxyguanosinetriphosp 99.6 1.1E-15 3.3E-20 135.1 4.4 67 326-396 1-67 (68) 11 >2pq7_A Predicted HD superfami 99.1 1.4E-10 4.1E-15 97.5 4.4 133 49-222 10-142 (220) 12 >2o08_A BH1327 protein; NP_242 98.7 5.3E-08 1.6E-12 78.4 8.4 115 68-217 13-133 (134) 13 >3dto_A BH2835 protein; all al 98.7 5.7E-08 1.7E-12 78.1 7.1 119 55-215 5-125 (126) 14 >3b57_A LIN1889 protein; Q92AN 98.6 8.3E-08 2.4E-12 76.9 5.7 111 68-219 20-130 (209) 15 >3gw7_A Uncharacterized protei 98.5 9E-08 2.6E-12 76.7 4.7 115 64-215 16-130 (131) 16 >2qgs_A Protein Se1688; alpha- 98.5 9.8E-07 2.9E-11 69.0 10.0 59 66-124 18-77 (128) 17 >2ogi_A Hypothetical protein S 98.4 1.8E-06 5.4E-11 67.0 9.4 128 71-227 24-152 (159) 18 >3djb_A Hydrolase, HD family; 98.4 1.2E-07 3.5E-12 75.8 3.1 82 61-142 13-94 (126) 19 >3ccg_A HD superfamily hydrola 98.3 4E-06 1.2E-10 64.5 8.2 113 73-215 19-133 (135) 20 >3i7a_A Putative metal-depende 97.5 0.00028 8.2E-09 50.9 6.2 133 54-223 14-162 (199) 21 >3hc1_A Uncharacterized HDOD d 97.3 0.00012 3.5E-09 53.7 2.8 121 72-218 32-159 (220) 22 >2paq_A 5'-deoxynucleotidase Y 96.3 0.0055 1.6E-07 41.3 4.5 38 72-109 30-73 (201) 23 >1vqr_A Hypothetical protein C 95.4 0.0074 2.2E-07 40.3 2.0 38 75-112 126-164 (297) 24 >3kh1_A Predicted metal-depend 95.4 0.015 4.3E-07 38.2 3.4 51 73-123 18-76 (178) 25 >1u6z_A Exopolyphosphatase; al 93.7 0.093 2.8E-06 32.2 4.3 112 73-217 16-136 (139) 26 >3ibj_A CGMP-dependent 3',5'-c 93.1 0.086 2.5E-06 32.5 3.3 83 68-170 92-183 (252) 27 >1taz_A Calcium/calmodulin-dep 92.9 0.12 3.7E-06 31.3 3.9 75 70-145 80-167 (233) 28 >3hr1_A CAMP and CAMP-inhibite 92.9 0.13 3.9E-06 31.1 4.0 73 70-143 44-126 (156) 29 >3dyn_A High affinity CGMP-spe 92.8 0.072 2.1E-06 33.0 2.6 60 66-126 69-135 (232) 30 >3ljx_A MMOQ response regulato 92.6 0.17 4.9E-06 30.3 4.2 34 75-108 13-47 (140) 31 >3itu_A CGMP-dependent 3',5'-c 92.5 0.11 3.4E-06 31.5 3.3 52 64-116 74-132 (238) 32 >1xx7_A Oxetanocin-like protei 92.1 0.23 6.9E-06 29.3 4.4 37 73-109 9-50 (156) 33 >2our_A CAMP and CAMP-inhibite 91.7 0.13 3.8E-06 31.1 2.8 78 66-144 74-161 (190) 34 >3g4g_A DPDE3, PDE43, CAMP-spe 91.7 0.1 3.1E-06 31.9 2.2 41 71-112 161-208 (324) 35 >1tbf_A CGMP-specific 3',5'-cy 91.6 0.15 4.4E-06 30.7 3.0 56 69-125 98-160 (257) 36 >1y2k_A DPDE3, PDE43, CAMP-spe 91.6 0.12 3.6E-06 31.3 2.5 55 70-125 94-155 (258) 37 >1f0j_A PDE4B, phosphodiestera 90.6 0.18 5.2E-06 30.2 2.5 45 70-115 81-132 (245) 38 >2cqz_A 177AA long hypothetica 88.8 0.68 2E-05 25.8 4.4 37 73-109 10-51 (131) 39 >1ynb_A Hypothetical protein A 88.5 0.41 1.2E-05 27.4 3.2 39 71-109 36-77 (173) 40 >1zkl_A HCP1, TM22, high-affin 87.6 0.11 3.2E-06 31.7 -0.3 43 70-113 81-130 (237) 41 >3ecm_A High affinity CAMP-spe 87.0 0.18 5.3E-06 30.1 0.6 57 69-126 72-135 (188) 42 >2r8q_A Class I phosphodiester 83.9 0.36 1.1E-05 27.8 0.9 14 100-113 13-26 (137) 43 >3bjc_A CGMP-specific 3',5'-cy 83.4 1.2 3.7E-05 23.9 3.5 16 378-393 702-717 (771) 44 >1so2_A CGMP-inhibited 3',5'-c 81.5 0.51 1.5E-05 26.7 0.9 13 76-88 87-99 (288) 45 >2gz4_A Hypothetical protein A 80.7 1.1 3.1E-05 24.4 2.3 34 73-109 29-62 (181) 46 >3hi0_A Putative exopolyphosph 77.6 0.96 2.9E-05 24.7 1.3 13 97-109 48-60 (62) 47 >1vj7_A Bifunctional RELA/SPOT 51.3 13 0.00038 16.4 2.8 11 76-86 52-62 (156) 48 >1ccw_B Protein (glutamate mut 49.4 6.1 0.00018 18.8 0.9 38 105-142 21-58 (74) 49 >2okc_A Type I restriction enz 47.1 5.6 0.00017 19.1 0.4 11 338-348 319-329 (445) 50 >3l4q_A NS1, NS1A, non-structu 45.2 4.6 0.00014 19.7 -0.2 32 114-145 102-133 (164) 51 >3d6r_B NS1, NS1A, non-structu 43.4 5.1 0.00015 19.3 -0.2 33 114-146 96-128 (158) 52 >3lkd_A Type I restriction-mod 40.9 7.8 0.00023 18.0 0.4 10 108-117 106-115 (346) 53 >3ke8_A 4-hydroxy-3-methylbut- 39.1 10 0.00031 17.1 0.8 18 210-227 21-38 (145) 54 >2zxq_A Endo-alpha-N-acetylgal 37.0 7.3 0.00022 18.2 -0.3 16 105-120 54-69 (158) 55 >2rhk_A NS1, NS1A, non-structu 36.8 6.1 0.00018 18.8 -0.7 32 114-145 85-116 (140) 56 >1qm9_A Polypyrimidine tract-b 33.2 26 0.00078 14.1 2.4 23 108-130 8-30 (108) 57 >2jak_A Serine/threonine-prote 30.4 29 0.00086 13.8 2.1 18 156-174 1-18 (100) 58 >1u8b_A ADA polyprotein; prote 30.2 28 0.00083 13.9 1.8 22 380-401 34-55 (65) 59 >3ldu_A Putative methylase; st 29.5 22 0.00066 14.6 1.2 11 109-119 136-146 (214) 60 >1x4d_A Matrin 3; structural g 28.7 30 0.00088 13.7 1.7 23 108-130 20-42 (102) 61 >1o9g_A RRNA methyltransferase 27.8 12 0.00036 16.5 -0.4 14 205-218 64-77 (250) 62 >3eu6_A NS1, nonstructural pro 27.5 11 0.00032 16.9 -0.7 12 152-163 50-61 (215) 63 >3djl_A Protein AIDB; alpha he 24.1 24 0.00071 14.4 0.6 24 35-58 19-42 (54) 64 >3k0b_A Predicted N6-adenine-s 20.1 43 0.0013 12.5 1.2 10 109-118 136-145 (216) No 1 >>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217} (A:1-119,A:180-360) Probab=100.00 E-value=0 Score=399.39 Aligned_cols=258 Identities=26% Similarity=0.344 Sum_probs=197.8 Q ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 46585438703337734778889999843400001102734623275747871699987066208889999999999988 Q gi|254780286|r 12 QKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARA 91 (410) Q Consensus 12 ~~~~~~a~~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~ 91 (410) +|..++++.+..+.++......+..|.+|++|++|||+|++||||++||||||+..+|++|||+||||||+++||+|++. T Consensus 3 ~~~~~~~~~~~~~~~~i~d~v~~~i~~~~~~d~~rii~s~~fqRL~~~~Ql~~~~~~~a~htR~~HSlgV~~la~~~~~~ 82 (300) T 3bg2_A 3 NWEHLLSLKRQGDTAKRLRIEQDDTRLGFEVDYDRIIFSAPFRSLQDKTQVIPLSKTDFVHTRLTHSLEVSVVGRSLGRM 82 (300) T ss_dssp CHHHHTCCCCTTCSSCCCGGGCCGGGCHHHHHHHHHHHSHHHHHGGGCBCSCC---CCCCCBHHHHHHHHHHHHHHHHHH T ss_pred CHHHHHCHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 66665061114676577788889989806423118765897762657772514799987717304999999999999999 Q ss_pred CCCC-------------------HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC Q ss_conf 3999-------------------889999998886289988654789999997312554577657788754321146701 Q gi|254780286|r 92 LRID-------------------EDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFD 152 (410) Q Consensus 92 l~~~-------------------~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~ 152 (410) ++.+ .++|++|||+|||| T Consensus 83 l~~~~~~~~~~~~~~~~~~~~~~~~~v~~A~L~HDiG------------------------------------------- 119 (300) T 3bg2_A 83 VGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIG------------------------------------------- 119 (300) T ss_dssp HHHHHHHHSTHHHHTTCCCHHHHHHHHHHHHHHTTTT------------------------------------------- T ss_pred HHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHCCCCCC------------------------------------------- T ss_conf 9999988471123212222343588998850155458------------------------------------------- Q ss_pred CCCHHHHHHHHHHCCCCCCCCCCCC------CCCCCH---HHHHHHHHHHCCC-------CCCCCCHHHHHHHHHHHHHH Q ss_conf 0002478887763475778864445------521001---4577667640223-------13366732179865655443 Q gi|254780286|r 153 GINLTWETLEGLIGHNGPILPQDLD------KPRIIP---RIFSDYYHIHGLS-------LANFASLEGQVAAIADDIAY 216 (410) Q Consensus 153 GLNLT~atL~~iiKyp~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~-------~~~~~slEa~iveaADDIAY 216 (410) |||||||+|++||||++...+.. |++.+. ..+.......++. ....+++++||||||||||| T Consensus 120 --NLT~atL~ailKYP~~~~~~~~~~~~~~~K~G~f~sE~~~~~~i~~~~gl~~~~~~~~~~~~Rhpl~~iMEaADDIaY 197 (300) T 3bg2_A 120 --RLSYATLGAFMKYPKESLPHKPSDHIADKKYGFFQSERALFEDVAQELGLLKRSTTDDVSWSRHPLAYLVEAADDICY 197 (300) T ss_dssp --CCCHHHHHHHCSSCBCCC-----------CCSCCGGGHHHHHHHHHHHTCCBC----CCBBCCCTTHHHHHHHHHHHH T ss_pred --HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf --556999999996486546677655433122465465789988688652032045222335578919999998775511 Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--HHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH Q ss_conf 212079899875306776300156688899--9886548-8998999999999999999997888678778751545467 Q gi|254780286|r 217 DAHDIDDGVRAGLLTVDMLKEISFLEKHIA--SLHDLYG-HLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIH 293 (410) Q Consensus 217 ~~hDlEDai~~gli~~~~l~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~~~~~~~~~ 293 (410) ++||||||+++|+|+++++.+. +..... ....... ..+.......++...|+.+|+.++..+..+... T Consensus 198 ~i~DLEDai~~glit~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~lv~~~~~~F~~~~~~------- 268 (300) T 3bg2_A 198 TIIDFEDGINLGLIPEEYALEY--MVKLVGQTIDRNKYNALQETSDRVSYLRALAIGTLINESVDTFMKYEEE------- 268 (300) T ss_dssp HHHHHHHHHHHSSSCC---------------------CCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH------- T ss_pred CCEEHHHHHHHCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------- T ss_conf 0311876665033789999988--9998755556766520014999999899999999999999999996898------- Q ss_pred HHHHC--CCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 64426--852111470357999999999999851 Q gi|254780286|r 294 DIRSA--GYRIIDFSDEMTLVDKEIKSMLVKYVY 325 (410) Q Consensus 294 di~~~--~~~li~fs~~~~~~~k~LK~~l~~~Vy 325 (410) +..+ +..|+.. .+....++.||++++++|| T Consensus 269 -i~~g~~~~~Ll~~-~~~~~~l~~lK~~a~~~Iy 300 (300) T 3bg2_A 269 -ILAGTFDQSLIDK-SNYQAQITDIINLSIERIY 300 (300) T ss_dssp -HHHTCCCSCTGGG-CTTHHHHHHHHHHHHHHTT T ss_pred -HHCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCC T ss_conf -8525666664477-7999999999999999801 No 2 >>2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase; deoxyguanosinetriphosphate triphsphohydrolase; 2.35A {Pseudomonas syringae PV} (A:1-113,A:229-354) Probab=100.00 E-value=0 Score=377.80 Aligned_cols=220 Identities=25% Similarity=0.283 Sum_probs=187.9 Q ss_pred CCCCCCCHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC Q ss_conf 58543870333773477888999984340000110273462327574787169998706620888999999999998839 Q gi|254780286|r 14 KVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALR 93 (410) Q Consensus 14 ~~~~a~~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~ 93 (410) ..+|++.+.++++|...++..++|++|++|++|||+|++|||||+||||||+..+|++||||||||||+|+||+|+..|+ T Consensus 3 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~d~~rii~s~~frRL~~~~Q~~~~~~~~~~~tR~~Hsl~v~~~a~~~~~~l~ 82 (239) T 2pgs_A 3 LDWQTLLNRERLGKTLHSPEELGRSPFHKDHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEVSCVGRSLGXRVG 82 (239) T ss_dssp CCTTTTTCCCBC-------------CHHHHHHHHHHSHHHHGGGGCCCCCC-------CCHHHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHCCHHHCCCCCCCCCCCCCCCHHHCCHHHHCCHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH T ss_conf 87564638110388878877889980531511886489776165687054279998880707799999999999999999 Q ss_pred C--------------CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf 9--------------98899999988862899886547899999973125545776577887543211467010002478 Q gi|254780286|r 94 I--------------DEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWE 159 (410) Q Consensus 94 ~--------------~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~a 159 (410) . +.++|++|||+|||||-= T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~a~L~HDiGh~~----------------------------------------------- 115 (239) T 2pgs_A 83 ETLRAALPDWCDPSDLGXVVQSACLAHDIGNRW----------------------------------------------- 115 (239) T ss_dssp HHTGGGSCTTCCHHHHHHHHHHHHHHTTTTCBC----------------------------------------------- T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC----------------------------------------------- T ss_conf 889763700024410788999999872289923----------------------------------------------- Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH Q ss_conf 88776347577886444552100145776676402231336673217986565544321207989987530677630015 Q gi|254780286|r 160 TLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEIS 239 (410) Q Consensus 160 tL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~hDlEDai~~gli~~~~l~~~~ 239 (410) .+++|||||||||||||++||||||+++|+|+++++.+.. T Consensus 116 ----------------------------------------~r~p~~~ImeaADDIAY~vhDlEDAi~~glit~~~l~~~l 155 (239) T 2pgs_A 116 ----------------------------------------ARHPLVYLXEAADDICYALIDLEDGLEXDLLDYAEVESLL 155 (239) T ss_dssp ----------------------------------------CCCTTHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHH T ss_pred ----------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH T ss_conf ----------------------------------------3685899999989999899989856651778799999989 Q ss_pred --HH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf --66-888999886548899899999999999999999788867877875154546764426852111470357999999 Q gi|254780286|r 240 --FL-EKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEI 316 (410) Q Consensus 240 --~~-~~~~~~~~~~~~~~~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~~~~~~~~~di~~~~~~li~fs~~~~~~~k~L 316 (410) .+ +...+......+.........++++++|+.||++++..+..++.. +.+....+..++.+|+++...++.| T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lI~~lV~~~i~~f~~n~~~-----i~~g~~~~~Ll~~~s~e~~~~~k~L 230 (239) T 2pgs_A 156 LGLVGDDLPETYRQLGPGDSRRRKLAILRGKAIEHLTNAAARAFVEQQDA-----LLAGTLPGDLVEHXHGPAKRCVLNA 230 (239) T ss_dssp HTTCC----------------CHHHHHHHHHHHHHHHHHHHHHHTTTSHH-----HHSSCCSSCGGGGSCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCHHHHCCHHHHHHHHHH T ss_conf 99987778999864031246789999999999999999999999984899-----8721123520432268999999999 Q ss_pred HHHHHHHHH Q ss_conf 999999851 Q gi|254780286|r 317 KSMLVKYVY 325 (410) Q Consensus 317 K~~l~~~Vy 325 (410) |+|++++|| T Consensus 231 K~~~~~~VY 239 (239) T 2pgs_A 231 KDXARKKIF 239 (239) T ss_dssp HHHHHHHTT T ss_pred HHHHHHHHH T ss_conf 999999974 No 3 >>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily; 2.20A {Thermus thermophilus HB8} (A:27-308) Probab=100.00 E-value=1.5e-43 Score=341.19 Aligned_cols=282 Identities=43% Similarity=0.667 Sum_probs=242.3 Q ss_pred CCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 77347788899998434000011027346232757478716999870662088899999999999883999889999998 Q gi|254780286|r 25 LGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIAL 104 (410) Q Consensus 25 ~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L 104 (410) |+|...++-..++++|++|..|||+|++|+||++++|++++.-++++|||++|||+||++|+.+++.++.|+++|++||| T Consensus 1 r~k~~~d~~~~~i~~~~~~~~~ii~t~~~qRL~~i~Qlg~~~~~~~~htR~eHSlgV~~la~~~~~~l~~~~~lv~~aaL 80 (282) T 2dqb_A 1 RGRAHPEPESLYRTPYQKDRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRSIARALGLNEDLTEAIAL 80 (282) T ss_dssp CCCSSCCCCCSSCCHHHHHHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCHHHCCHHHHCCHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 38887888999999133141388648988604678878436999853666789999999999999998520204788887 Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHH Q ss_conf 88628998865478999999731255457765778875432114670100024788877634757788644455210014 Q gi|254780286|r 105 AHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPR 184 (410) Q Consensus 105 ~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~ 184 (410) .|||||+||||.||.+++.++.+.++|+||+||+|+++.++.......++|||.+++++|++|+++....... T Consensus 81 lHDiGh~pfsH~~e~~~~~~~~~~~~~~he~~~~~i~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~------- 153 (282) T 2dqb_A 81 SHDLGHPPFGHTGEHVLNALXQDHGGFEHNAQALRILTHLEVRYPGFRGLNLTYEVLEGIATHEAAYSPGFKP------- 153 (282) T ss_dssp HTTTTCCSSTTHHHHHHHHHTTTTTCCCHHHHHHHHHHTTCBCBTTBSBCCCCHHHHHHHHHSCC--------------- T ss_pred HHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH------- T ss_conf 4222789852139999899876259900207899999755216777798402354454432033222620456------- Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH Q ss_conf 57766764022313366732179865655443212079899875306776300156688899988654889989999999 Q gi|254780286|r 185 IFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLDDKRLVHEL 264 (410) Q Consensus 185 ~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~hDlEDai~~gli~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 264 (410) ......+.+++++..||+|+|..+|++||++.|+++.+++.....+......+....+.+.... .... T Consensus 154 -----------~~~~~~~~~~~~~~daD~~dY~~rD~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e-~~~~ 221 (282) T 2dqb_A 154 -----------LYEGQGTLEAQVVDLSDAIAYAAHDLDDGFRAGLLHPEELKEVELLQALALEEGLDLLRLPELD-RRVL 221 (282) T ss_dssp --------------CCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCGGGGGGSHHHHHHHHHTTCCTTTCCHHH-HHHH T ss_pred -----------HHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHH T ss_conf -----------7642687789985325428731766888975065778888876788999998754102323888-8878 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 9999999999788867877875154546764426852111470357999999999999851 Q gi|254780286|r 265 VRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVY 325 (410) Q Consensus 265 ~r~~I~~~i~d~i~~s~~~i~~~~~~~~~di~~~~~~li~fs~~~~~~~k~LK~~l~~~Vy 325 (410) .+..+...+.+........+.........+++......+.++++.....+.+|+++.++|| T Consensus 222 ~r~~l~~~vy~h~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~lk~i~~~~iy 282 (282) T 2dqb_A 222 VRQLLGYFITAAIEATHRRVEEAGVQSAEAVRRHPSRLAALGEEAEKALKALKAFLXERFY 282 (282) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHTT T ss_pred HHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 8875131668889888887520012208988614421332021000002378999999980 No 4 >>2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase; deoxyguanosinetriphosphate triphsphohydrolase; 2.35A {Pseudomonas syringae PV} (A:114-228,A:355-451) Probab=100.00 E-value=9.3e-40 Score=313.12 Aligned_cols=175 Identities=21% Similarity=0.226 Sum_probs=121.5 Q ss_pred CCCCCCHHHHHHHHHHH-----------------CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC Q ss_conf 98865478999999731-----------------2554577657788754321146701000247888776347577886 Q gi|254780286|r 111 PPFGHVGEDVLQELLSS-----------------YGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILP 173 (410) Q Consensus 111 pPFGH~GE~al~~~~~~-----------------~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~ 173 (410) |||||+||+||++||++ +++||||||||||||+||.+ .+.+|||||||||+||+||||++.. T Consensus 1 PPFGH~GE~aI~~wf~~~~~~~~~~~l~~~~~~D~~~FEGNAQ~lRilt~Le~~-~~~~GlnLT~atL~~ilKYp~~s~~ 79 (212) T 2pgs_A 1 PPFGHSGEDAIRNWFNQAAGRGWLDAXSETERNDFLNFEGNAQGFRVLTQLEYH-QFDGGTRLTYATLGTYLKYPWTARH 79 (212) T ss_dssp CTTHHHHHHHHHHHHHHHHTTTTTTTSCHHHHHHHHTCCHHHHHHHHHHTTSSB-TTTTBTCCBHHHHHHHCSSCBBCC- T ss_pred CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCC T ss_conf 997794899999998861684113221066640136765458886886415335-7886302567753130016865566 Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 44455210014577667640223133667321798656554432120798998753067763001566888999886548 Q gi|254780286|r 174 QDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYG 253 (410) Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~hDlEDai~~gli~~~~l~~~~~~~~~~~~~~~~~~ 253 (410) .+.... ..+++ |++.-| .+++ T Consensus 80 ~~~~~~--~~kK~-----------------------------------------g~f~sE----~~~f------------ 100 (212) T 2pgs_A 80 ADSLGY--KKHKF-----------------------------------------GCYQSE----LPIL------------ 100 (212) T ss_dssp ---------CCCC-----------------------------------------CBCTTT----HHHH------------ T ss_pred CCCCCC--CCCCC-----------------------------------------HHHHHH----HHHH------------ T ss_conf 543220--00231-----------------------------------------110000----5899------------ Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH Q ss_conf 89989999999999999999978886787787515454676442685211147035799999999999985178999999 Q gi|254780286|r 254 HLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTC 333 (410) Q Consensus 254 ~~~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~~~~~~~~~di~~~~~~li~fs~~~~~~~k~LK~~l~~~Vy~~~~v~~~ 333 (410) . ++.... -++.. ...+|++|+.+ T Consensus 101 ----------------~----~i~~~~--------------------gl~~~-----------------~~~~~~~v~~~ 123 (212) T 2pgs_A 101 ----------------E----QIAGKL--------------------GLPQL-----------------EEQQDKRKTLH 123 (212) T ss_dssp ----------------H----HHHHHH--------------------TCCCC-----------------BTTTCHHHHHH T ss_pred ----------------H----HHHHHC--------------------CCCCC-----------------HHCCCHHHHHH T ss_conf ----------------9----998762--------------------78430-----------------01068999999 Q ss_pred HHHHHHHHHHHHHHHHHCHH------HCCCCHHHHH--------HHCCCHHCCCEEEHHEECCCCHHHHHHHHHHHHCC- Q ss_conf 99999999999999987888------4574106776--------60258000010302000673369999999998188- Q gi|254780286|r 334 CNQIANVIRNLFSAYMSDPR------KMRGCNQLEY--------ERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGY- 398 (410) Q Consensus 334 e~~g~~iI~~Lf~~f~~~p~------~l~~~~~~~~--------~~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~G~- 398 (410) |.+|++||.+||+.|++... .+...++... ....+.|.++|.|+||||||||+||+++||+|+|+ T Consensus 124 El~g~~ii~~LLd~f~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~Y~r~~~v~DyISGMTD~yA~~ly~~l~Gi~ 203 (212) T 2pgs_A 124 EIGAYTTLEILLNAFCGAAVEQFGGRTPSFKHRRILDLLGNSAPDPKAPLHASFLRXIDFIAGXTDSYASEXAREXTGRS 203 (212) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTGGGCCCCTTHHHHHHTTTTSSCCTTSCHHHHHHHHHHHHHTSCHHHHHHHHHTC---- T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC T ss_conf 99999999999999988487520113742668999976311055644576779989986410562879999999804939 Q ss_pred CCCC Q ss_conf 9885 Q gi|254780286|r 399 IPDF 402 (410) Q Consensus 399 ~p~~ 402 (410) +|+. T Consensus 204 lp~~ 207 (212) T 2pgs_A 204 GEGH 207 (212) T ss_dssp ---- T ss_pred CCCC T ss_conf 8987 No 5 >>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, PSI-2, protein structure initiative; HET: DGT DTP; 2.40A {Enterococcus faecalis V583} PDB: 2o6i_A* (A:1-247) Probab=100.00 E-value=3.4e-39 Score=308.96 Aligned_cols=216 Identities=13% Similarity=0.083 Sum_probs=171.5 Q ss_pred EEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEE--ECCCCCCCCCCHHHHHH Q ss_conf 4311367864658543870333773477888999984340000110273462327574787--16999870662088899 Q gi|254780286|r 3 VVRKLGFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVF--FHRQRDHYRTRLMHTIE 80 (410) Q Consensus 3 ~~~~~~~~~~~~~~~a~~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf--~~~~~d~~rtRLtHslE 80 (410) ....++..-++++........+++|...+|-..+++.|++|++|||+|++|+||++||||+ ++...+.+|||+||||+ T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~k~i~Dpv~g~i~~~~~~~~rIidt~~fqRLr~i~Qlg~~~lv~p~a~htRfeHSLG 93 (247) T 3irh_A 14 GTENLYFQSNAMTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLG 93 (247) T ss_dssp ------------CCCGGGCEEEEEEEEEETTTEEEEEEEHHHHHHHTSHHHHGGGGSBSSTTGGGTSTTCCCBHHHHHHH T ss_pred CCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCCEEECHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH T ss_conf 73124421100248555445887746846987418958799998629987732255754777766478981472209999 Q ss_pred HHHHHHHHHHHCCC---------------CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 99999999988399---------------988999999888628998865478999999731255457765778875432 Q gi|254780286|r 81 VSQIARSLARALRI---------------DEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145 (410) Q Consensus 81 Va~i~rsi~~~l~~---------------~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE 145 (410) |+++||++++.|+. ..+++++|||+||||||||||+||+++.+|+.+.++|.+|.++.++++.|+ T Consensus 94 V~~la~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~AaLlHDiGH~PFsH~~E~~~~~~~~~~~~~~~~~~~~~~~~~l~ 173 (247) T 3irh_A 94 VYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIFDTNHEAITVQIITSPETEVYQILN 173 (247) T ss_dssp HHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTTCCTTHHHHHHHHCCCHHHHHHHHHHCTTSHHHHHHH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999986065211244567778999999999985247660244035431334378999999712256889998 Q ss_pred HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11467010002478887763475778864445521001457766764022313366732179865655443212079899 Q gi|254780286|r 146 CSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGV 225 (410) Q Consensus 146 ~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~hDlEDai 225 (410) . .|+|+|.+++++|.||||+......-. ......-.++.... ..+.++ .+.+..+|+|+|+++|+||++ T Consensus 174 ~-----~~~~~~~~v~~~i~~~~~~~~~~~~~s-~~ld~Dr~Dyl~RD----s~~~g~-~~~~~d~drI~~~~~~~ed~l 242 (247) T 3irh_A 174 R-----VSADFPEKVASVITKQYPNPQVVQMIS-SQIDADRMDYLLRD----AYFTGT-EYGTFDLTRILRVIRPYKGGI 242 (247) T ss_dssp H-----HCTTHHHHHHHHHTTCSSCHHHHHHHS-STTCHHHHHHHHHH----HHHHTC-STTCCCHHHHHHHEEEETTEE T ss_pred H-----CCCCCHHHHHHHHCCCCCCCHHHHHHC-CCCCCCHHHHHHHH----HHHHCC-CCCCCHHHHHHHHCEECCCEE T ss_conf 7-----256409999765327875300001201-56340167666403----467514-557625999997476601120 Q ss_pred HHHH Q ss_conf 8753 Q gi|254780286|r 226 RAGL 229 (410) Q Consensus 226 ~~gl 229 (410) ++|+ T Consensus 243 ~~~~ 246 (247) T 3irh_A 243 AFAM 246 (247) T ss_dssp EEEG T ss_pred EEHH T ss_conf 2067 No 6 >>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site and active site being FAR from EACH other, structural genomics; HET: GDP; 2.00A {Aquifex aeolicus} (A:1-221) Probab=99.97 E-value=1.3e-34 Score=275.16 Aligned_cols=201 Identities=19% Similarity=0.227 Sum_probs=167.3 Q ss_pred CCCCHHHCCCCEEECCHHHHHHCCCCEEEEC--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHCCCC Q ss_conf 9998434000011027346232757478716--9998706620888999999999998839998-899999988862899 Q gi|254780286|r 35 LTRSEFQRDRDRMIHTTAFRRLKDKTQVFFH--RQRDHYRTRLMHTIEVSQIARSLARALRIDE-DLVEAIALAHDFGHP 111 (410) Q Consensus 35 ~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~--~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~-dlvea~~L~HDiGhp 111 (410) --|.+|.++..+||.|++|+||+++||+.+. .-.+..|||++|||+|+++|+.+++.+..+. +++++|||.|||||| T Consensus 10 hg~i~~~~~~~~ii~t~~fqRLr~i~Qlg~~~~v~p~a~htRfeHSLGV~~la~~~~~~l~~~~~~~i~~AaLLHDiGH~ 89 (221) T 2hek_A 10 YGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHP 89 (221) T ss_dssp TEEEEEEHHHHHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCC T ss_pred CCCEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC T ss_conf 78886288999981997671545662478563427998366110999999999999999854348899999998612541 Q ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCH---HHH-H Q ss_conf 886547899999973125545776577887543211467010002478887763475778864445521001---457-7 Q gi|254780286|r 112 PFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIP---RIF-S 187 (410) Q Consensus 112 PFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~---~~~-~ 187 (410) ||||.+|++++.++...++|++|++++|+++.++.......|.++++.+++++.|||++.........-... ... . T Consensus 90 PfsH~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ld~D~~Dyl~RD 169 (221) T 2hek_A 90 PFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPEDEEEKLLSEIITGEFGSDRMDYLRRD 169 (221) T ss_dssp SSSSCHHHHSTTSSSCCCHHHHHHHHSHHHHHHHTTSCHHHHHHHHHHHHTCCSSHHHHHHHHHHHSTTCHHHHHHHHHH T ss_pred CCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHCCCC T ss_conf 11441245521013211678999720179999987512035999999985245675125588875044211134300321 Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCHHHH Q ss_conf 66764022313366732179865655443---2120798998753067763 Q gi|254780286|r 188 DYYHIHGLSLANFASLEGQVAAIADDIAY---DAHDIDDGVRAGLLTVDML 235 (410) Q Consensus 188 ~~~~~~~~~~~~~~slEa~iveaADDIAY---~~hDlEDai~~gli~~~~l 235 (410) .+....+........+++++|+++|+||| .++|+||.+.++...++++ T Consensus 170 ~~~~g~~~~~~d~~~l~~~~~~~~d~i~~~~k~~~~ie~~~~~R~~~~~~v 220 (221) T 2hek_A 170 AYFCGVSYGFFDYDRLISTLRVYENKVVVDESGLRALENFLISRYFMYVQV 220 (221) T ss_dssp HHHHTCCSSCCCCHHHHHTEEEETTEEEEEGGGHHHHHHHHHHHHHHHHHT T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 133056667358999998766423001122405999999999999989999 No 7 >>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217} (A:120-179,A:361-444) Probab=99.96 E-value=2.6e-30 Score=243.32 Aligned_cols=74 Identities=11% Similarity=0.008 Sum_probs=63.2 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHH--------HHCCCHHCCCEEEHHEECCCCHHHHHHHHHHHHC Q ss_conf 78999999999999999999999878884574106776--------6025800001030200067336999999999818 Q gi|254780286|r 326 RHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEY--------ERDMTDSIKARHVGDYLAGMTDSYAIREHHILFG 397 (410) Q Consensus 326 ~~~~v~~~e~~g~~iI~~Lf~~f~~~p~~l~~~~~~~~--------~~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~G 397 (410) +|++|+.++.+|++||+.||+.|+++|..++..+.... ....+.+.++|+||||||||||+||+++|++|+| T Consensus 61 ~~~~v~~~e~~g~~ii~~Lfd~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~V~DyISGMTD~yA~~~y~~L~g 140 (144) T 3bg2_A 61 NSREVIEKEIAGYEILSTLLEARCRALDNNDTHYNQLIQQLLAPNDHSEKSLYENLIQICAEVSTMTDGKALRNYKKIKG 140 (144) T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHC------CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC T ss_conf 88999999999999999999999986763726699999986075320001646645012315327839899999999659 Q ss_pred CC Q ss_conf 89 Q gi|254780286|r 398 YI 399 (410) Q Consensus 398 ~~ 399 (410) +. T Consensus 141 ~~ 142 (144) T 3bg2_A 141 LD 142 (144) T ss_dssp C- T ss_pred CC T ss_conf 77 No 8 >>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:1-190) Probab=99.91 E-value=1.4e-26 Score=215.78 Aligned_cols=147 Identities=17% Similarity=0.079 Sum_probs=120.5 Q ss_pred HCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECC--CCCCCCCCHHHHHHHHHHHHHHHHHCCCC----- Q ss_conf 33773477888999984340000110273462327574787169--99870662088899999999999883999----- Q gi|254780286|r 23 QSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHR--QRDHYRTRLMHTIEVSQIARSLARALRID----- 95 (410) Q Consensus 23 ~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~--~~d~~rtRLtHslEVa~i~rsi~~~l~~~----- 95 (410) .+.+|...+|-..+++.|++|+.|||.|++|+||+++||+.+.. -++.+|||++|||.|+.+|+.+++.++.+ T Consensus 3 ~~~~k~i~Dpvhg~i~~~~~~~~~Ii~tp~fqRLr~i~Qlg~~~~v~p~a~htRfeHSLGV~~la~~~~~~l~~~~~~~~ 82 (190) T 2q14_A 3 PYERKIINDPVFGFINIPKGLLYDIVRHPLLQRLTRIKQVGLSSVVYPGAQHTRFQHSLGAFYLXSEAITQLTSKGNFIF 82 (190) T ss_dssp --CEEEEEETTTEEEEEETTHHHHHHHSHHHHGGGGSBTTTTTTTTCTTCCCBHHHHHHHHHHHHHHHHHHHHHTTCCCC T ss_pred CCCCEEEECCCCCCEEECHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 99970786189874896879999872997672006866478776658998447000999999999999999986188888 Q ss_pred ---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH----------------------CCCCCCCCCHHHHHHHHHHCCC- Q ss_conf ---88999999888628998865478999999731----------------------2554577657788754321146- Q gi|254780286|r 96 ---EDLVEAIALAHDFGHPPFGHVGEDVLQELLSS----------------------YGGFDHNIQSFRIVTELECSYA- 149 (410) Q Consensus 96 ---~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~----------------------~~gFegNaQ~~Rilt~LE~~~~- 149 (410) ..+|++|||.||||||||||.+|+++++|+.. ...++||+|.+++++.+..... T Consensus 83 ~~~~~~v~~AaLLHDiGH~PFsH~~E~~~~~~~~he~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~~~~~~~ld~ 162 (190) T 2q14_A 83 DSEAEAVQAAILLHDIGHGPFSHVLEDTIVQGVSHEEISLXLXERXNKEXNGQLSLAIQIFKDEYPKRFLHQLVSGQLDX 162 (190) T ss_dssp HHHHHHHHHHHHHTTTTCCTTHHHHHTTTSTTCCHHHHHHHHHHHHHHHTTTTTHHHHHHHTTCSSSTHHHHHHSSTTCH T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCC T ss_conf 78999999999987158641012267775048750568999999876642520556775405776401788870488562 Q ss_pred C--CCCCCHHHHHHHHHHCCCC Q ss_conf 7--0100024788877634757 Q gi|254780286|r 150 D--FDGINLTWETLEGLIGHNG 169 (410) Q Consensus 150 ~--~~GLNLT~atL~~iiKyp~ 169 (410) + -.+||.+|+|..++.||+. T Consensus 163 Dr~Dyl~RDs~~~g~~~g~~d~ 184 (190) T 2q14_A 163 DRLDYLRRDSFYTGVTEGNIGS 184 (190) T ss_dssp HHHHHHHHHHHHHCCGGGCCCH T ss_pred HHHHHHHHHHHHHCCCCCCCCH T ss_conf 1687776778874666676229 No 9 >>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} (A:) Probab=99.84 E-value=1.2e-21 Score=179.21 Aligned_cols=187 Identities=15% Similarity=0.074 Sum_probs=127.9 Q ss_pred CCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 00011027346232757478716999870662088899999999999883999889999998886289988654789999 Q gi|254780286|r 43 DRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQ 122 (410) Q Consensus 43 D~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~ 122 (410) -|||||+|+.|+||+.+||||+ .+++.+||+|||++|+++|+.||+.+++|++++++|||.||||+|||||.||..+. T Consensus 2 ~r~r~i~~~~~~~l~~~~~~~~--~~~~~~~r~~Hsl~V~~~a~~ia~~~~~d~~~~~~AaLlHDIGk~~~~~~~e~~~~ 79 (231) T 2pjq_A 2 AGDPXITETQLTAIQTYALQKL--AHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKLXANPAKAHQ 79 (231) T ss_dssp ----CCCHHHHHHHHHHHHTSS--TTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC---------CHH T ss_pred CCCHHHHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHH T ss_conf 9870404999999999999984--56977678799999999999999884999999999999975212113588677899 Q ss_pred HHHHHCCCCCCCCCHHHHH-HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC Q ss_conf 9973125545776577887-543211467010002478887763475778864445521001457766764022313366 Q gi|254780286|r 123 ELLSSYGGFDHNIQSFRIV-TELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFA 201 (410) Q Consensus 123 ~~~~~~~gFegNaQ~~Ril-t~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (410) .|.+...++..+.+-...+ .-+........+.|++..++.+.+++...... ........................ T Consensus 80 ~~~~~~~~~~~~~~~~~~v~~~I~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 155 (231) T 2pjq_A 80 DLIVQLNAQNVTADDQTAIFAIIDHXSFSKSFNGPQKLSLEGQVVQDADRLD----AIGAIGIARALYYSGHVGEKIYDP 155 (231) T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTSCCTGGGGGCCCCCCSHHHHHHHHHHHT----TSHHHHHHHHHHHHHHHTCCSCCT T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 9999987199898999999999994898823678987689999999888987----432177999999988608866686 Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH Q ss_conf 7321798656554432120798998753067763 Q gi|254780286|r 202 SLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDML 235 (410) Q Consensus 202 slEa~iveaADDIAY~~hDlEDai~~gli~~~~l 235 (410) +.+...+..++++++...+..+....+++...+. T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (231) T 2pjq_A 156 AIAPREHXTREQYRHQPGTAINHFYEKLFKLAAL 189 (231) T ss_dssp TSCCCSSCCHHHHHHSCCCTTHHHHHTGGGHHHH T ss_pred CCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHH T ss_conf 5566654347776318851889999999977876 No 10 >>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily; 2.20A {Thermus thermophilus HB8} (A:309-376) Probab=99.58 E-value=1.1e-15 Score=135.10 Aligned_cols=67 Identities=30% Similarity=0.464 Sum_probs=60.7 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHCCCHHCCCEEEHHEECCCCHHHHHHHHHHHH Q ss_conf 78999999999999999999999878884574106776602580000103020006733699999999981 Q gi|254780286|r 326 RHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILF 396 (410) Q Consensus 326 ~~~~v~~~e~~g~~iI~~Lf~~f~~~p~~l~~~~~~~~~~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~ 396 (410) +||.|+..+.+|.+||++||+.|+++|+.||..|+.. .++..+.|+||||||||||+||+++|++|| T Consensus 1 r~p~v~~~~~k~~~ii~~Lf~~~~~~p~~lP~~~~~~----~~~~~~~R~V~DYIAGMTDryAi~~y~~lf 67 (68) T 2dqb_A 1 RHPEVLRERRKAEAVLEGLFAAYTRYPELLPREVQAK----IPEEGLERAVCDYIAGXTDRFALEAYRRLS 67 (68) T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHTT----HHHHCHHHHHHHHHHTCCHHHHHHHHHHTC T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHH----CCCCCHHEEEEEECCCCHHHHHHHHHHHCC T ss_conf 8999999999999999999999985998589999963----677663407412322671889999999719 No 11 >>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} (A:) Probab=99.06 E-value=1.4e-10 Score=97.47 Aligned_cols=133 Identities=17% Similarity=0.108 Sum_probs=101.5 Q ss_pred CCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC Q ss_conf 27346232757478716999870662088899999999999883999889999998886289988654789999997312 Q gi|254780286|r 49 HTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSY 128 (410) Q Consensus 49 ~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~ 128 (410) +-..|+|+...+|++ +...+..++++.||+.|+.+|+.||+.+++|++++.+|||.||||+++++|.+++....- T Consensus 10 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~Hs~~V~~~a~~ia~~l~ld~~~l~~aaLlHDiGk~~~~~~~~~~~~~~---- 84 (220) T 2pq7_A 10 RIPHLREILNIVREA-FKDYDDPAHDISHTFRVXENASEIASREKCDLQKAIIAALLHDIKRPHEALTGVDHAESG---- 84 (220) T ss_dssp HSTTHHHHHHHHHHH-HTTCCCTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHHHHHHCCCHHHHH---- T ss_pred HHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH---- T ss_conf 719999999999999-744899875669999999999999988498999999999987642022057765689999---- Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 55457765778875432114670100024788877634757788644455210014577667640223133667321798 Q gi|254780286|r 129 GGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVA 208 (410) Q Consensus 129 ~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iv 208 (410) ...+-.++.... .-...+-+++..+.+|+++..+.. .+++++++ T Consensus 85 -----~~~~~~~l~~~~------~~~~~~~~v~~h~e~~~~~~~~~~-------------------------~~~~a~ii 128 (220) T 2pq7_A 85 -----AEYASGLLPTXG------FDISFVAEVSKAIRSHRYSGGLTP-------------------------TSLTGKIL 128 (220) T ss_dssp -----HHHHHHHGGGGT------CCHHHHHHHHHHHHHCC-----CC-------------------------CSHHHHHH T ss_pred -----HHHHHHHHHHCC------CCHHHHHHHHHHHHHHCCCCCCCC-------------------------CCHHHHHH T ss_conf -----999999898769------999999999999998187557776-------------------------67899999 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 65655443212079 Q gi|254780286|r 209 AIADDIAYDAHDID 222 (410) Q Consensus 209 eaADDIAY~~hDlE 222 (410) ..||.+....-+-. T Consensus 129 ~~aD~~d~~~~~~~ 142 (220) T 2pq7_A 129 QDADRLDAIGAVAI 142 (220) T ss_dssp HHHHHGGGSSHHHH T ss_pred HHHHHHHHCCCCCH T ss_conf 99999810565103 No 12 >>2o08_A BH1327 protein; NP_242193.1, hypothetical protein, structural genomics, joint center for structural genomics, JCSG, PSI-2; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} (A:1-134) Probab=98.74 E-value=5.3e-08 Score=78.37 Aligned_cols=115 Identities=23% Similarity=0.139 Sum_probs=91.2 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC------CCCCCCCHHHHH Q ss_conf 98706620888999999999998839998899999988862899886547899999973125------545776577887 Q gi|254780286|r 68 RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG------GFDHNIQSFRIV 141 (410) Q Consensus 68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~------gFegNaQ~~Ril 141 (410) ...-.++..||+.|+.+++.||+.++++++.+..|||.||||..++.+..++.+........ .+.|..-|.+++ T Consensus 13 ~~~~~~~~~Hs~~Va~~a~~la~~~~ld~~~~~~aalLHDiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~g~~~l 92 (134) T 2o08_A 13 PHLTEHRYQHTIGVXETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEXRTLIREKLSQQDILFYGDELLHAPCGAYYV 92 (134) T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGSHHHHHHHHH T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 86784342699999999999999909399999999999860565686999999863799556999754322799999999 Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 5432114670100024788877634757788644455210014577667640223133667321798656554432 Q gi|254780286|r 142 TELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYD 217 (410) Q Consensus 142 t~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~ 217 (410) .+. +.++.-.+..++..|-++..+ .++|++|+.+||.++.. T Consensus 93 ~~~--------~~~~~~~v~~~i~~h~~~~~~---------------------------~~~~~~Il~~aD~~dal 133 (134) T 2o08_A 93 REE--------VGIEDEDVLQAIRFHTTGRPN---------------------------XSLLEKIIFLADYIEPN 133 (134) T ss_dssp HHH--------HCCCCHHHHHHHHTTTTCCTT---------------------------CCHHHHHHHHHHHHSTT T ss_pred HHH--------CCCCHHHHHHHHHHHCCCCCC---------------------------CCCHHHHHHHHHHCCCC T ss_conf 988--------189809999999975889999---------------------------87177898988524641 No 13 >>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} (A:1-126) Probab=98.68 E-value=5.7e-08 Score=78.14 Aligned_cols=119 Identities=15% Similarity=0.073 Sum_probs=86.1 Q ss_pred HHCCCCEEEE--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC Q ss_conf 3275747871--69998706620888999999999998839998899999988862899886547899999973125545 Q gi|254780286|r 55 RLKDKTQVFF--HRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFD 132 (410) Q Consensus 55 RL~~KTQVf~--~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFe 132 (410) ++-++++.+. .-...+..++++||+.|+++++.||+.+|+|++++.+|||.||||..+..+.++........-..... T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~Hs~~Va~~a~~ia~~~g~~~~~l~~aallHDIG~~~~~~~~~~~~~~~~~~~~~~~ 84 (126) T 3dto_A 5 AILQSAEAWVKKQLXDEYSGHDWYHIRRVTLXAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAKQQLIDWXEAAG 84 (126) T ss_dssp HHHHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC-------CHHHHHHHHHHHTTT T ss_pred HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC T ss_conf 99999999999997368887787999999999999998849999999999997203013457773768999999998779 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77657788754321146701000247888776347577886444552100145776676402231336673217986565 Q gi|254780286|r 133 HNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIAD 212 (410) Q Consensus 133 gNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaAD 212 (410) - ..++.-.+..+|.-|.+|..-. ...-|++++|+-.|| T Consensus 85 ~-------------------~~~~~~~v~~~I~~H~~~~~~~-----------------------~~~~t~~~~ii~~AD 122 (126) T 3dto_A 85 V-------------------PSQKIDHTXDIINTISFKGGHG-----------------------QSLATREAXVVQDAD 122 (126) T ss_dssp C-------------------CHHHHHHHHHHHHCC---------------------------------CCHHHHHHHHHH T ss_pred C-------------------CHHHHHHHHHHHHHHHCCCCCC-----------------------CCCCCHHHHHHHHHH T ss_conf 9-------------------9999999999999976426889-----------------------999999999999989 Q ss_pred HHH Q ss_conf 544 Q gi|254780286|r 213 DIA 215 (410) Q Consensus 213 DIA 215 (410) -++ T Consensus 123 ~~d 125 (126) T 3dto_A 123 RLD 125 (126) T ss_dssp HGG T ss_pred HHH T ss_conf 986 No 14 >>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} (A:) Probab=98.59 E-value=8.3e-08 Score=76.95 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=77.0 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 98706620888999999999998839998899999988862899886547899999973125545776577887543211 Q gi|254780286|r 68 RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECS 147 (410) Q Consensus 68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~ 147 (410) ...-.+|.+||+.|+.++..||+.+++|++++..|||.||||..+++|.++.....+..-...... T Consensus 20 ~~~~~~~~~Hs~~Va~~a~~ia~~lg~d~~~l~~AalLHDiGk~~~~~~~~~~~~~~~~~~~~~~~-------------- 85 (209) T 3b57_A 20 NETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIKLTTDEQEATKTLINWXETKEI-------------- 85 (209) T ss_dssp -----CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC-------CHHHHHHHHHHHHTTC-------------- T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC-------------- T ss_conf 799887989999999999999988599899999999975413345787455668999999987899-------------- Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 467010002478887763475778864445521001457766764022313366732179865655443212 Q gi|254780286|r 148 YADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAH 219 (410) Q Consensus 148 ~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~h 219 (410) |.++.-.+..+|.-|-....... ....+.++.|+..+|.+.-... T Consensus 86 -----~~~~~~~v~~~I~~Hhe~~~g~g----------------------~p~~~~~~~i~~~~d~~~~~~~ 130 (209) T 3b57_A 86 -----PSELIKKIIRIIQSVSFKKGKNT----------------------FKALTIEEKIVQDADRLDAIGA 130 (209) T ss_dssp -----CHHHHHHHHHHHHHHC-------------------------------CCCHHHHHHHHHHHHTTSHH T ss_pred -----CHHHHHHHHHHHHHHHHCCCCCC----------------------CCCCCHHHHHHHHHHHHHHCCC T ss_conf -----99999999999998774035788----------------------8975789999997888860376 No 15 >>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} (A:1-131) Probab=98.54 E-value=9e-08 Score=76.69 Aligned_cols=115 Identities=16% Similarity=0.067 Sum_probs=79.5 Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 16999870662088899999999999883999889999998886289988654789999997312554577657788754 Q gi|254780286|r 64 FHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTE 143 (410) Q Consensus 64 ~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~ 143 (410) .........+++.||+.|+.++..||+.+++|++++..+||.||||..+.-+.+...-...-.+ ..-.+... T Consensus 16 ~~~~~~~~~~~~~H~~~V~~~a~~ia~~~~~d~~~l~~aallHDiG~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 87 (131) T 3gw7_A 16 NHHQHQDAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAE--------ETRRLLRE 87 (131) T ss_dssp CC---------CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC--------CCSSHHHHH--------HHHHHHHH T ss_pred HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHH--------HHHHHHHH T ss_conf 9862688767879999999999999987498899999999973433131268721025777999--------99999986 Q ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 321146701000247888776347577886444552100145776676402231336673217986565544 Q gi|254780286|r 144 LECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIA 215 (410) Q Consensus 144 LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIA 215 (410) . .-..+.+.+-.++.+|..|.++.... ..+++++|+..||.+. T Consensus 88 ~----~~~~~~~~~~~v~~~I~~H~~~~~~~-------------------------~~~~~~~Iv~~AD~~d 130 (131) T 3gw7_A 88 E----FEQFPAEKIEAVCHAIAAHSFSAQIA-------------------------PLTTEAKIVQDADRLE 130 (131) T ss_dssp H----TTSSCTTTTTSTTTGGGSSCTTSCCC-------------------------CCSHHHHHHHHHTGGG T ss_pred H----CCCCCHHHHHHHHHHHHHHCCCCCCC-------------------------CCCHHHHHHHHHHHHH T ss_conf 4----14899999999999998532578988-------------------------7635899999988886 No 16 >>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Staphylococcus epidermidis atcc 12228} (A:1-128) Probab=98.54 E-value=9.8e-07 Score=69.03 Aligned_cols=59 Identities=22% Similarity=0.098 Sum_probs=52.2 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 99987066208889999999999988399-988999999888628998865478999999 Q gi|254780286|r 66 RQRDHYRTRLMHTIEVSQIARSLARALRI-DEDLVEAIALAHDFGHPPFGHVGEDVLQEL 124 (410) Q Consensus 66 ~~~d~~rtRLtHslEVa~i~rsi~~~l~~-~~dlvea~~L~HDiGhpPFGH~GE~al~~~ 124 (410) ...++..+.+.||+.|+.+|..||+.+++ +++++..+||.||||..+.+|.++.+.... T Consensus 18 ~~~~~~~~~~~Hs~~Va~la~~la~~l~~~~~~ll~~aaLlHDiG~~~~~~~~~~~~~~~ 77 (128) T 2qgs_A 18 HQHDTTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSKLTDEILAYDQLK 77 (128) T ss_dssp TTTCSSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCCSSSCHHHHHHHHH T ss_pred HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH T ss_conf 628988778799999999999999884987399999999986214312354278899999 No 17 >>2ogi_A Hypothetical protein SAG1661; NP_688652.1, conserved hypothetical protein TIGR00488, structural genomics; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} (A:1-159) Probab=98.44 E-value=1.8e-06 Score=66.99 Aligned_cols=128 Identities=14% Similarity=0.035 Sum_probs=80.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 06620888999999999998839998899999988862899886547899999973125545776577887543211467 Q gi|254780286|r 71 YRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYAD 150 (410) Q Consensus 71 ~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~ 150 (410) -..+..||+.||.+++.||+.++++++.+..+||.||||..+..+...+...+.... .+....+-.+....+...... T Consensus 24 ~~~~~~Hs~~va~~a~~ia~~~~~~~~~~~~a~lLHDIGk~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~~~~~l~ 101 (159) T 2ogi_A 24 SDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQPD--PDLKKWGNNIWHGLVGIYKIQ 101 (159) T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTCCHHHHHHHHHHHCCC--TGGGGSCHHHHHHHTHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--CHHHHHHHCCCHHHHHHHHHH T ss_conf 824649999999999999999791999999999999816646879999998754897--439887400100388999986 Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHH Q ss_conf 0100024788877634757788644455210014577667640223133667321798656554-4321207989987 Q gi|254780286|r 151 FDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDI-AYDAHDIDDGVRA 227 (410) Q Consensus 151 ~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDI-AY~~hDlEDai~~ 227 (410) .. -++.......++.|..+-.+ ..+++++|+-+||.+ ++...+--+-++. T Consensus 102 ~~-~~~~~~~~~~~~~hh~~~~~--------------------------~~~~~a~ii~~AD~~d~~~~~~~~~~l~~ 152 (159) T 2ogi_A 102 ED-LAIKDQDILAAIAKHTVGSA--------------------------QXSTLDKIVYVADYIEHNRDFPGVEEARE 152 (159) T ss_dssp HH-SCCCCHHHHHHHHTTTTCCS--------------------------SCCHHHHHHHHHHHHCTTCCSTTHHHHHH T ss_pred HH-CCCCCHHHHHHHHHCCCCCC--------------------------CCCCHHHHHHHHHHHCCCCCCCCHHHHHH T ss_conf 32-59997999999996188999--------------------------85469999999998623799862999999 No 18 >>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} (A:1-126) Probab=98.43 E-value=1.2e-07 Score=75.78 Aligned_cols=82 Identities=17% Similarity=0.108 Sum_probs=61.7 Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf 78716999870662088899999999999883999889999998886289988654789999997312554577657788 Q gi|254780286|r 61 QVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRI 140 (410) Q Consensus 61 QVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Ri 140 (410) ++.......+..+|..||+.|++++..||+.+++|++++.++||.||||..+.++..+.....-.+-...+.-+.+-.++ T Consensus 13 ~l~~~~~~~~~~~~~~H~~~V~~~a~~la~~~~~d~~~~~~aallHDiGk~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~ 92 (126) T 3djb_A 13 FVKHILEKDASGHDWYHIRRVHKXAISLSEQEGGNRFIIEXAALLHDVADEKLNESEEAGXKKVSDWLEELHVEEEESKH 92 (126) T ss_dssp HHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--CCSSSTTTHHHHHHHHHHTCCCHHHHHH T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH T ss_conf 99998707987788699999999999999884998999999999974043001340777899999999887989999999 Q ss_pred HH Q ss_conf 75 Q gi|254780286|r 141 VT 142 (410) Q Consensus 141 lt 142 (410) +. T Consensus 93 i~ 94 (126) T 3djb_A 93 VL 94 (126) T ss_dssp HH T ss_pred HH T ss_conf 99 No 19 >>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} (A:1-135) Probab=98.29 E-value=4e-06 Score=64.46 Aligned_cols=113 Identities=18% Similarity=0.076 Sum_probs=77.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHCCCC Q ss_conf 620888999999999998839998899999988862899886547899999973125--545776577887543211467 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG--GFDHNIQSFRIVTELECSYAD 150 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~--gFegNaQ~~Rilt~LE~~~~~ 150 (410) .+.-||+.||.+++.||+.+++|++.+..|||.||||-......--........+.. .-.|...|.++|..+.... T Consensus 19 ~~~~Hs~~Va~la~~ia~~l~ld~~~~~~aaLlHDIGk~~~~~~~~~~~~~l~~~~~~~~~~h~~~g~~~l~~~~~~~-- 96 (135) T 3ccg_A 19 KRYKHSLGVXDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRNSYLLHGLAGRILAKK-- 96 (135) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHTTCCCCHHHHTTTTC-CHHHHHHHHHH-- T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHH-- T ss_conf 072899999999999999829499999999999985354686999998875367314999986732247999999875-- Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 01000247888776347577886444552100145776676402231336673217986565544 Q gi|254780286|r 151 FDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIA 215 (410) Q Consensus 151 ~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIA 215 (410) ..++..-...+++..|..+. ...+++++|+-+||.++ T Consensus 97 -~~~~~~e~~~~~~~~~~~~~---------------------------~~~~~~a~Ii~~AD~~d 133 (135) T 3ccg_A 97 -VIGIDDEDVLNAIEFHTTGR---------------------------PNXSLLEKIIYIADYIE 133 (135) T ss_dssp -TTCCCCHHHHHHHHTTTTCC---------------------------SSCCHHHHHHHHHHHHS T ss_pred -HCCCCHHHHHHHHHHHCCCC---------------------------CCCCHHHHHHHHHHHHC T ss_conf -43687599999999728899---------------------------99687999999999716 No 20 >>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, structural genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} (A:1-23,A:106-281) Probab=97.49 E-value=0.00028 Score=50.90 Aligned_cols=133 Identities=15% Similarity=0.063 Sum_probs=82.3 Q ss_pred HHHCCCCEEEECCCCCCCCCC----HHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 232757478716999870662----088899999999999883-------999889999998886289988654789999 Q gi|254780286|r 54 RRLKDKTQVFFHRQRDHYRTR----LMHTIEVSQIARSLARAL-------RIDEDLVEAIALAHDFGHPPFGHVGEDVLQ 122 (410) Q Consensus 54 RRL~~KTQVf~~~~~d~~rtR----LtHslEVa~i~rsi~~~l-------~~~~dlvea~~L~HDiGhpPFGH~GE~al~ 122 (410) ..|.+..-+ +..++.++.+ -.||+.||.+++.||+.+ +.+++.+-.+||.||||.++.-..-.+.-. T Consensus 14 ~~~~~~~~~--~s~~~~~~~~~~~~w~HS~~va~~a~~ia~~l~l~~~~~~~~~~~a~~agLLHDIGk~~~~~~~~~~~~ 91 (199) T 3i7a_A 14 KKLKDDALI--LSTNEXVWEVXDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALPVLTEAEAHPE 91 (199) T ss_dssp HHHHTTCSC--CCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHHHHHHHHHCGG T ss_pred HHHHHCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 999838888--947705567899999999999999999999962347533136999998551530148999888587676 Q ss_pred -----HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC Q ss_conf -----997312554577657788754321146701000247888776347577886444552100145776676402231 Q gi|254780286|r 123 -----ELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSL 197 (410) Q Consensus 123 -----~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (410) +|-....++.|...|..++.+ .++.-....+|.-|..+.... T Consensus 92 ~~~~~e~e~~~~~~~H~~~ga~ll~~----------w~~p~~i~~~I~~Hhe~~d~~----------------------- 138 (199) T 3i7a_A 92 XFTTIEHLRSLVRKXQGPIGRAVLKS----------WDFAPEVXEVVERWADLPYLG----------------------- 138 (199) T ss_dssp GCCCHHHHHHHHHHHHHHHHHHHHHH----------TTCCHHHHHHHHHTTCTTCCC----------------------- T ss_pred HCCHHHHHHHHHCCCHHHHHHHHHHH----------CCCCHHHHHHHHHHCCCCCCC----------------------- T ss_conf 44679999998652278999999987----------599999999999870855477----------------------- Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 33667321798656554432120798 Q gi|254780286|r 198 ANFASLEGQVAAIADDIAYDAHDIDD 223 (410) Q Consensus 198 ~~~~slEa~iveaADDIAY~~hDlED 223 (410) ..+.++.|+.+||.++-.+..-.+ T Consensus 139 --~~~~l~~ii~lAd~~~~l~~~~~~ 162 (199) T 3i7a_A 139 --DHVSYLDFIRAAAFYTGELRAGNE 162 (199) T ss_dssp --SSCCHHHHHHHHHHHHTSSCCGGG T ss_pred --CCCHHHHHHHHHHHHHHHCCCCCC T ss_conf --531299999999999865378876 No 21 >>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, structural genomics; 1.90A {Geobacter sulfurreducens} (A:1-25,A:111-305) Probab=97.35 E-value=0.00012 Score=53.67 Aligned_cols=121 Identities=17% Similarity=0.074 Sum_probs=69.9 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCC----CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 66208889999999999988399-98899999988862899----88654789999997312554577657788754321 Q gi|254780286|r 72 RTRLMHTIEVSQIARSLARALRI-DEDLVEAIALAHDFGHP----PFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC 146 (410) Q Consensus 72 rtRLtHslEVa~i~rsi~~~l~~-~~dlvea~~L~HDiGhp----PFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~ 146 (410) -++.-||+.||.+++.||+.+++ +++++..++|.||||-. .|++..+..........+.+ +..|. T Consensus 32 ~~~~~HS~~vA~~A~~iA~~l~~~d~e~a~~agLLHDIGk~~l~~~~~~~~~~~~~~~~~~~~~l----------~~~E~ 101 (220) T 3hc1_A 32 STLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITF----------GQAEE 101 (220) T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCH----------HHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH----------HHHHH T ss_conf 88899999999999999998036899999999999846999997766698999999986579998----------99999 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH--HHHHCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 1467010002478887763475778864445521001457766--76402231336673217986565544321 Q gi|254780286|r 147 SYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDY--YHIHGLSLANFASLEGQVAAIADDIAYDA 218 (410) Q Consensus 147 ~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~slEa~iveaADDIAY~~ 218 (410) .=+..+.+.+++.+.-.|...+. .... ..-..+.....++..+.++-+||.++=.. T Consensus 102 -----~~~~~~h~~~g~~l~~~~~~p~~-----------i~~~I~~Hhe~~~~~~~~~~la~~v~iAd~~~~~~ 159 (220) T 3hc1_A 102 -----RLFGTSHCEVGFALAKRWSLNEF-----------ICDTILYHHDIEAVPYKQAAIVAXVAFADEYCTLR 159 (220) T ss_dssp -----HHHSSCHHHHHHHHHHHTTCCHH-----------HHHHHHHTTCGGGCSSSCCHHHHHHHHHHHHHHHT T ss_pred -----HHHCCCHHHHHHHHHHHCCCCHH-----------HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf -----99688999999999998699999-----------99999986592427755035979999999999970 No 22 >>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphohydrolase, structural genomics, PSI, protein structure initiative; 2.10A {Escherichia coli K12} (A:) Probab=96.32 E-value=0.0055 Score=41.30 Aligned_cols=38 Identities=21% Similarity=0.363 Sum_probs=33.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHCC Q ss_conf 662088899999999999883------99988999999888628 Q gi|254780286|r 72 RTRLMHTIEVSQIARSLARAL------RIDEDLVEAIALAHDFG 109 (410) Q Consensus 72 rtRLtHslEVa~i~rsi~~~l------~~~~dlvea~~L~HDiG 109 (410) -|-..||+.||.+++.||..+ ++|.+.+-.+||.|||| T Consensus 30 esva~Hs~~Va~la~~la~~l~~~~~~~id~~~~~~~aLlHDig 73 (201) T 2paq_A 30 ENVSEHSLQVAXVAHALAAIKNRKFGGNVNAERIALLAXYHDAS 73 (201) T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 78999999999999999878877346677999999999970069 No 23 >>1vqr_A Hypothetical protein CJ0248; 6967725, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.25A {Campylobacter jejuni subsp} (A:) Probab=95.41 E-value=0.0074 Score=40.33 Aligned_cols=38 Identities=13% Similarity=-0.033 Sum_probs=33.8 Q ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCC Q ss_conf 08889999999999988399-988999999888628998 Q gi|254780286|r 75 LMHTIEVSQIARSLARALRI-DEDLVEAIALAHDFGHPP 112 (410) Q Consensus 75 LtHslEVa~i~rsi~~~l~~-~~dlvea~~L~HDiGhpP 112 (410) ..||+.||.+++.+|+.++. +++++..+||.||||=.. T Consensus 126 ~~hs~~~A~la~~la~~l~~~~~~~~~~agllhdiGkl~ 164 (297) T 1vqr_A 126 LKTCNEEATFIANWLNDEDKKLSHLLVPCAXLLRLGIVI 164 (297) T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHH T ss_conf 999789999999998762542689999867775302999 No 24 >>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} (A:23-200) Probab=95.38 E-value=0.015 Score=38.17 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=39.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHCC------CCCCCCCHHHHHHH Q ss_conf 620888999999999998839--9988999999888628------99886547899999 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALR--IDEDLVEAIALAHDFG------HPPFGHVGEDVLQE 123 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~--~~~dlvea~~L~HDiG------hpPFGH~GE~al~~ 123 (410) |=..||.-||.+|..||..++ +|.+.|-..||.|||| -|+++..+...+.. T Consensus 18 svaeHs~~vA~~a~~la~~~g~~~d~~~~~~~aLlHDi~E~~~gDi~~~~k~~~~~~~~ 76 (178) T 3kh1_A 18 NDAEHSWHIATXAFLLAEYADEAVQIGRVARXLLIHDIVEIDAGDTFIHDEAGNEDKEE 76 (178) T ss_dssp EHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHHHHCCCCTTCCC---CHHH T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH T ss_conf 59999999999999877764898898999999999888987637877777534888899 No 25 >>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} (A:313-451) Probab=93.74 E-value=0.093 Score=32.21 Aligned_cols=112 Identities=12% Similarity=-0.045 Sum_probs=60.5 Q ss_pred CCHHHHHHHHHHHHHHHHH------CCCCHH---HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 6208889999999999988------399988---9999998886289988654789999997312554577657788754 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARA------LRIDED---LVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTE 143 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~------l~~~~d---lvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~ 143 (410) .-.+||+.|+.++..|++. ++++++ .+..|||.||||.--- .-..+.+++.++.. T Consensus 16 ~~~~H~~~v~~la~~l~~~l~~~~~~~l~~~~~~~l~~AallhdiG~~~~----------------~~~l~~~~~~~i~~ 79 (139) T 1u6z_A 16 IDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNIN----------------HSGLHRHSAYILQN 79 (139) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHTTTTTTTC----------------STTHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC----------------HHHHHHHHHHHHHC T ss_conf 58888888899999999988653256799679999999999856160038----------------66799989999974 Q ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 32114670100024788877634757788644455210014577667640223133667321798656554432 Q gi|254780286|r 144 LECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYD 217 (410) Q Consensus 144 LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~ 217 (410) .+..+=-.+-...+..++.|--...+.. +.|. .. ++.. ..-...++|+.+||..... T Consensus 80 ----h~~~g~~~~~~~~ia~ii~~hhe~~dg~-g~p~-~~----------~l~~-~~i~~~a~il~iad~~d~l 136 (139) T 1u6z_A 80 ----SDLPGFNQEQQLMMATLVRYHRKAIKLD-DLPR-FT----------LFKK-KQFLPLIQLLRLGVLLNNQ 136 (139) T ss_dssp ----SCCTTCCHHHHHHHHHHHHTSSSCCCCT-TCCC-CS----------SCCH-HHHHHHHHHHHHHHHTTTT T ss_pred ----CCCCCCCHHHHHHHHHHHHHHCCCCCCH-HHHH-HC----------CCCH-HHHHHHHHHHHHHHHHHCC T ss_conf ----9889989999999999999847899804-4444-25----------0039-9999999999999997373 No 26 >>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation, alternative splicing, hydrolase, membrane, polymorphism; 3.02A {Homo sapiens} (A:348-599) Probab=93.06 E-value=0.086 Score=32.48 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=49.1 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf 98706620888999999999998839998-----89--999998886289988654789999997312554577657788 Q gi|254780286|r 68 RDHYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRI 140 (410) Q Consensus 68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Ri 140 (410) +--+|| -.|+..|.|..-.+-...++.. ++ .=.|||+||+|||.+-- .|--|.|+- T Consensus 92 ~npYHN-~~HA~dv~q~~~~~l~~~~~~~~l~~~e~~alliAal~HD~~HpG~~N--------------~fl~~~~~~-- 154 (252) T 3ibj_A 92 DPPYHN-WMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNN--------------SFQVASKSV-- 154 (252) T ss_dssp CCSSSB-HHHHHHHHHHHHHHHHHHTGGGTSCHHHHHHHHHHHHHTTTTCCCCCC--------------SCSSSSSCC-- T ss_pred CCCCCC-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC--------------HHHHHCCCH-- T ss_conf 998837-899999999999999716874326879999999999726779999897--------------788744677-- Q ss_pred HHHHHHCCCC-C-CCCCHHHHHHHHHHCCCCC Q ss_conf 7543211467-0-1000247888776347577 Q gi|254780286|r 141 VTELECSYAD-F-DGINLTWETLEGLIGHNGP 170 (410) Q Consensus 141 lt~LE~~~~~-~-~GLNLT~atL~~iiKyp~~ 170 (410) |...|.+ . -==|-..++.-.++..|+. T Consensus 155 ---La~lY~nd~svlE~~H~~~~~~ll~~~~~ 183 (252) T 3ibj_A 155 ---LAALYSSEGSVMERHHFAQAIAILNTHGC 183 (252) T ss_dssp ---GGGTTTCSSSHHHHHHHHHHHHHHTSTTT T ss_pred ---HHHHHCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf ---88882899627889899999999856465 No 27 >>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} (A:1-233) Probab=92.92 E-value=0.12 Score=31.30 Aligned_cols=75 Identities=16% Similarity=0.167 Sum_probs=47.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCH-----H--HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC-CCC-----CCCCC Q ss_conf 706620888999999999998839998-----8--9999998886289988654789999997312-554-----57765 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRIDE-----D--LVEAIALAHDFGHPPFGHVGEDVLQELLSSY-GGF-----DHNIQ 136 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----d--lvea~~L~HDiGhpPFGH~GE~al~~~~~~~-~gF-----egNaQ 136 (410) -+|| -.|+..|+|-.-.+-...++.+ + ..=-|||+||+|||-+--.....-+.+..-. ++- -|-+. T Consensus 80 pyHN-~~Ha~dV~q~~~~~l~~~~~~~~l~~~e~~alliAal~HDv~HpG~tN~fli~~~~~la~~y~d~svlE~~H~~~ 158 (233) T 1taz_A 80 PYHN-QIHAADVTQTVHXFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISS 158 (233) T ss_dssp SSSS-HHHHHHHHHHHHHHHHHHSGGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHH T ss_pred CCCC-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHCCCCCHHHHHHHHH T ss_conf 7545-999999999999999704611228999999999999987158899657789855876888649987789999999 Q ss_pred HHHHHHHHH Q ss_conf 778875432 Q gi|254780286|r 137 SFRIVTELE 145 (410) Q Consensus 137 ~~Rilt~LE 145 (410) ++++|.+-| T Consensus 159 ~~~lL~~~~ 167 (233) T 1taz_A 159 VFRLMQDDE 167 (233) T ss_dssp HHHHTTSGG T ss_pred HHHHHHCCC T ss_conf 999982700 No 28 >>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* (A:66-221) Probab=92.90 E-value=0.13 Score=31.14 Aligned_cols=73 Identities=16% Similarity=0.221 Sum_probs=47.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCC--H-HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC---CC--CCCCHHH Q ss_conf 70662088899999999999883999--8-89--99999888628998865478999999731255---45--7765778 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRID--E-DL--VEAIALAHDFGHPPFGHVGEDVLQELLSSYGG---FD--HNIQSFR 139 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~--~-dl--vea~~L~HDiGhpPFGH~GE~al~~~~~~~~g---Fe--gNaQ~~R 139 (410) =+|| -.|+..|.|..-.+-...+.. + ++ .=.|||.||+|||-+-=.....-+.+.....+ -| |=+.+++ T Consensus 44 pyHN-~~Ha~dv~q~~~~ll~~~~~~~~~~e~~all~Aal~HDi~HpG~~N~fli~~~~~la~~y~dsvLE~~H~~~~~~ 122 (156) T 3hr1_A 44 PYHN-WKHAVTVAHCMYAILQNNNGLFTDLERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVS 122 (156) T ss_dssp SSSS-HHHHHHHHHHHHHHHHTSTTTSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHHTCHHHHHCSSSHHHHHHHHHHHH T ss_pred CCCH-HHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHCCCHHHHHHHHHHHHH T ss_conf 8722-867757883312377538833475899999999996057999987524423688587761828888889999999 Q ss_pred HHHH Q ss_conf 8754 Q gi|254780286|r 140 IVTE 143 (410) Q Consensus 140 ilt~ 143 (410) +|.+ T Consensus 123 lL~~ 126 (156) T 3hr1_A 123 ILQL 126 (156) T ss_dssp HHTS T ss_pred HHCC T ss_conf 9717 No 29 >>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphodiesterase 9A; crystallography, phophodiestrase, enzyme mechanism, alternative splicing, hydrolase; HET: PCG IBM; 2.10A {Homo sapiens} (A:1-232) Probab=92.84 E-value=0.072 Score=33.03 Aligned_cols=60 Identities=20% Similarity=0.361 Sum_probs=39.4 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 9998706620888999999999998839998-----89--9999988862899886547899999973 Q gi|254780286|r 66 RQRDHYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELLS 126 (410) Q Consensus 66 ~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~~ 126 (410) ..+--+|| -.|+..|.|..-.+-...++.. ++ .=.|||+||+|||.+--..-..-+.+.. T Consensus 69 Y~~npyHN-~~HA~dv~q~~~~~l~~~~~~~~~~~~e~~alliAal~HDv~HpG~tN~fli~~~~~la 135 (232) T 3dyn_A 69 YRNNPFHN-FRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELA 135 (232) T ss_dssp SCCCSSSS-HHHHHHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHH T ss_pred CCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHH T ss_conf 79999717-99999999999999985374332898999999999998617899878999987387688 No 30 >>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} (A:98-143,A:195-288) Probab=92.61 E-value=0.17 Score=30.34 Aligned_cols=34 Identities=9% Similarity=0.068 Sum_probs=31.0 Q ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHC Q ss_conf 0888999999999998839-998899999988862 Q gi|254780286|r 75 LMHTIEVSQIARSLARALR-IDEDLVEAIALAHDF 108 (410) Q Consensus 75 LtHslEVa~i~rsi~~~l~-~~~dlvea~~L~HDi 108 (410) -.||+.||-++|-||+.++ .+++-+=+++|.||- T Consensus 13 WeHSL~VAiIAR~IAkklg~~DpEEAFTAGLLHD~ 47 (140) T 3ljx_A 13 WQKSLARAVALQSITAQASTVAPKEAFTLGLLADP 47 (140) T ss_dssp HHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC T ss_conf 99999999999999998399888899888888447 No 31 >>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A (A:1-238) Probab=92.53 E-value=0.11 Score=31.55 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=36.3 Q ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH-----H--HHHHHHHHHHCCCCCCCCC Q ss_conf 169998706620888999999999998839998-----8--9999998886289988654 Q gi|254780286|r 64 FHRQRDHYRTRLMHTIEVSQIARSLARALRIDE-----D--LVEAIALAHDFGHPPFGHV 116 (410) Q Consensus 64 ~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~-----d--lvea~~L~HDiGhpPFGH~ 116 (410) ....+--+|| -.|+..|.|..-.+-...++.+ + -.=.|||+||+|||.+-=. T Consensus 74 ~~Y~~npYHN-~~Ha~dv~q~~~~~l~~~~~~~~l~~~e~~alliAal~HD~~HpG~~N~ 132 (238) T 3itu_A 74 KGYRDPPYHN-WMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNS 132 (238) T ss_dssp HTCCCCSSSS-HHHHHHHHHHHHHHHHHHCGGGTSCHHHHHHHHHHHHHTTTTCCSCCHH T ss_pred HCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH T ss_conf 6279998736-9999999999999996368543378899999999999714689987689 No 32 >>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} (A:29-184) Probab=92.07 E-value=0.23 Score=29.26 Aligned_cols=37 Identities=35% Similarity=0.433 Sum_probs=31.8 Q ss_pred CCHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHCC Q ss_conf 62088899999999999883-----99988999999888628 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARAL-----RIDEDLVEAIALAHDFG 109 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l-----~~~~dlvea~~L~HDiG 109 (410) |=-.||..||.+|-.|+..+ ++|.+-|-+.||.||+| T Consensus 9 svAeHs~~va~~a~~l~~~~~~~g~~vd~~~~~~~aL~HDl~ 50 (156) T 1xx7_A 9 SVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLG 50 (156) T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTT T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 499999999999999998987635556899999999986389 No 33 >>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 2o8h_A* 2ovv_A* 2ovy_A* (A:1-190) Probab=91.71 E-value=0.13 Score=31.15 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=44.2 Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--H-HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC-----CCCCC Q ss_conf 999870662088899999999999883999--8-89--99999888628998865478999999731255-----45776 Q gi|254780286|r 66 RQRDHYRTRLMHTIEVSQIARSLARALRID--E-DL--VEAIALAHDFGHPPFGHVGEDVLQELLSSYGG-----FDHNI 135 (410) Q Consensus 66 ~~~d~~rtRLtHslEVa~i~rsi~~~l~~~--~-dl--vea~~L~HDiGhpPFGH~GE~al~~~~~~~~g-----FegNa 135 (410) ..+--+|| -.|+..|.|..-.+-..++.. + ++ .=.|||+||+|||=+-=.....-+.+.....| =-|-+ T Consensus 74 Y~~~pyHN-~~HA~dv~q~~~~~l~~~~~~~~~~e~~alliAal~HD~~HpG~~N~fli~~~~~la~~y~~svLE~~H~~ 152 (190) T 2our_A 74 YRRVPYHN-WKHAVTVAHCMYAILQNNHTLFTDLERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFS 152 (190) T ss_dssp SCSCSSSS-HHHHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHTTCHHHHHSCSSHHHHHHHH T ss_pred CCCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHCCCCHHHHHHHH T ss_conf 79999807-89999999999999817864589899999999999834489998748998718818988298578878999 Q ss_pred CHHHHHHHH Q ss_conf 577887543 Q gi|254780286|r 136 QSFRIVTEL 144 (410) Q Consensus 136 Q~~Rilt~L 144 (410) .++++|.+- T Consensus 153 ~~~~lL~~~ 161 (190) T 2our_A 153 QTVSILQLE 161 (190) T ss_dssp HHHHHHTST T ss_pred HHHHHHHCC T ss_conf 999998233 No 34 >>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* (A:1-324) Probab=91.65 E-value=0.1 Score=31.85 Aligned_cols=41 Identities=22% Similarity=0.391 Sum_probs=17.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCC Q ss_conf 06620888999999999998839998-----89--99999888628998 Q gi|254780286|r 71 YRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPP 112 (410) Q Consensus 71 ~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpP 112 (410) +|| -+|+..|+|..-.+-...++.. ++ .=.|||+||+|||- T Consensus 161 yHN-~~HA~dv~q~~~~~l~~~~l~~~l~~~e~~alliAal~HDv~HpG 208 (324) T 3g4g_A 161 YHN-NIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPG 208 (324) T ss_dssp SSS-HHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCS T ss_pred CCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC T ss_conf 765-999999999999999654711118888999999999981168999 No 35 >>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} (A:1-257) Probab=91.58 E-value=0.15 Score=30.72 Aligned_cols=56 Identities=21% Similarity=0.241 Sum_probs=36.6 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 8706620888999999999998839998-----89--999998886289988654789999997 Q gi|254780286|r 69 DHYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELL 125 (410) Q Consensus 69 d~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~ 125 (410) --+|| -.|+..|+|..-.+-+..++.+ ++ .=.|||+||+|||-+-=...-.-+.+. T Consensus 98 npyHN-~~HA~dv~q~~~~~l~~~~~~~~l~~~e~~all~Aal~HDi~HpG~~N~fli~~~~~l 160 (257) T 1tbf_A 98 VAYHN-WRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHPGVSNQFLINTNSEL 160 (257) T ss_dssp SSSSS-HHHHHHHHHHHHHHHHTTCCGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHH T ss_pred CCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHH T ss_conf 98726-9999999999999997578665699999999999988505699998788999739878 No 36 >>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} (A:1-258) Probab=91.57 E-value=0.12 Score=31.34 Aligned_cols=55 Identities=18% Similarity=0.209 Sum_probs=36.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 706620888999999999998839998-----89--999998886289988654789999997 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELL 125 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~ 125 (410) -+|| -.|+..|.|..-.+-...++.. ++ .=-|||+||+|||..-=.-...-+.+. T Consensus 94 pyHN-~~Ha~dv~q~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~HpG~tN~fl~~~~~~l 155 (258) T 1y2k_A 94 AYHN-NIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSEL 155 (258) T ss_dssp SSSS-HHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHH T ss_pred CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHH T ss_conf 9866-9999999999999996668654598899999999999860289998857888548878 No 37 >>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} (A:1-245) Probab=90.56 E-value=0.18 Score=30.19 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=30.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCC Q ss_conf 706620888999999999998839998-----89--99999888628998865 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGH 115 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH 115 (410) =+|| -.|+..|.|..-.+-...++.+ ++ .=.|||+||+|||..-= T Consensus 81 pyHN-~~HA~dV~q~~~~~l~~~~~~~~l~~~e~~alliAal~HDi~HpG~~N 132 (245) T 1f0j_A 81 AYHN-SLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDHPGVSN 132 (245) T ss_dssp SSSS-HHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCSSCH T ss_pred CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 8643-999999999999999554600128989999999999980479999886 No 38 >>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.60A {Pyrococcus horikoshii OT3} (A:23-153) Probab=88.78 E-value=0.68 Score=25.82 Aligned_cols=37 Identities=30% Similarity=0.362 Sum_probs=31.4 Q ss_pred CCHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHCC Q ss_conf 6208889999999999988-----399988999999888628 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARA-----LRIDEDLVEAIALAHDFG 109 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~-----l~~~~dlvea~~L~HDiG 109 (410) |=-.||.-||-+|-.||.. -++|.+-|=+.||.||+| T Consensus 10 svAeHs~~~A~ia~~la~~~~~~~~~vd~~k~i~~aL~HDl~ 51 (131) T 2cqz_A 10 SIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLA 51 (131) T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTT T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 599999999999999998987725565899999999985699 No 39 >>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.76A {Archaeoglobus fulgidus dsm 4304} (A:) Probab=88.52 E-value=0.41 Score=27.44 Aligned_cols=39 Identities=23% Similarity=0.094 Sum_probs=32.1 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHCC Q ss_conf 066208889999999999988399---988999999888628 Q gi|254780286|r 71 YRTRLMHTIEVSQIARSLARALRI---DEDLVEAIALAHDFG 109 (410) Q Consensus 71 ~rtRLtHslEVa~i~rsi~~~l~~---~~dlvea~~L~HDiG 109 (410) --|=..||..||.+|-.|+..++. |.+-+=.+||.||++ T Consensus 36 ~EsVAeHs~~va~la~~l~~~~~~~~~d~~~~i~~aL~HDl~ 77 (173) T 1ynb_A 36 PESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLH 77 (173) T ss_dssp CCBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTT T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 987899999999999999867088510099999999999999 No 40 >>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* (A:1-237) Probab=87.57 E-value=0.11 Score=31.70 Aligned_cols=43 Identities=23% Similarity=0.441 Sum_probs=25.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCC----CCH-HH--HHHHHHHHHCCCCCC Q ss_conf 706620888999999999998839----998-89--999998886289988 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALR----IDE-DL--VEAIALAHDFGHPPF 113 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~----~~~-dl--vea~~L~HDiGhpPF 113 (410) -+|| -.|+..|.|..-.+-...+ +++ ++ .=.|||+||+|||=. T Consensus 81 pyHN-~~HA~dv~q~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~HpG~ 130 (237) T 1zkl_A 81 PYHN-AVHAADVTQAMHCYLKEPKLANSVTPWDILLSLIAAATHDLDHPGV 130 (237) T ss_dssp SSSS-HHHHHHHHHHHHHHHTSHHHHTTCCHHHHHHHHHHHHHTTTTCCSS T ss_pred CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC T ss_conf 8866-9999999999999992656000199999999999999802689986 No 41 >>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A* (A:1-188) Probab=87.03 E-value=0.18 Score=30.12 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=35.6 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCC----CCH-HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 8706620888999999999998839----998-89--9999988862899886547899999973 Q gi|254780286|r 69 DHYRTRLMHTIEVSQIARSLARALR----IDE-DL--VEAIALAHDFGHPPFGHVGEDVLQELLS 126 (410) Q Consensus 69 d~~rtRLtHslEVa~i~rsi~~~l~----~~~-dl--vea~~L~HDiGhpPFGH~GE~al~~~~~ 126 (410) --+|| -.|+..|.|..-.+-+..+ +++ ++ .=.|||+||+|||=+--......+.++. T Consensus 72 ~pyHN-~~HA~dV~q~~~~ll~~~~~~~~~~~~e~~alliAal~HD~~HpG~~N~fl~~~~~~la 135 (188) T 3ecm_A 72 NPYHN-STHSADVLHATAYFLSKERIKETLDPIDEVAALIAATIHDVDHPGRTNSFLCNAGSELA 135 (188) T ss_dssp SSSSS-HHHHHHHHHHHHHHHTSHHHHTTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHH T ss_pred CCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHH T ss_conf 98765-99999999999999973560013998999999999998337999998789988289188 No 42 >>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} (A:122-258) Probab=83.90 E-value=0.36 Score=27.84 Aligned_cols=14 Identities=36% Similarity=0.432 Sum_probs=11.0 Q ss_pred HHHHHHHHCCCCCC Q ss_conf 99998886289988 Q gi|254780286|r 100 EAIALAHDFGHPPF 113 (410) Q Consensus 100 ea~~L~HDiGhpPF 113 (410) =-|||+||+|||=+ T Consensus 13 liAal~HDv~HpG~ 26 (137) T 2r8q_A 13 LVTALVHDLDHMGV 26 (137) T ss_dssp HHHHHHTTTTCCSC T ss_pred HHHHHHHCCCCCCC T ss_conf 99999806799988 No 43 >>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} (A:1-771) Probab=83.36 E-value=1.2 Score=23.91 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=6.0 Q ss_pred HEECCCCHHHHHHHHH Q ss_conf 0006733699999999 Q gi|254780286|r 378 DYLAGMTDSYAIREHH 393 (410) Q Consensus 378 DYIAGMTD~YAi~ly~ 393 (410) ++-+++++..-..+.+ T Consensus 702 ~~~~~~~~~~~~~~~~ 717 (771) T 3bjc_A 702 QILSGLSIEEYKTTLK 717 (771) T ss_dssp CTTTTSCHHHHHHHHH T ss_pred CHHHCCCHHHHHHHHH T ss_conf 2110699999999999 No 44 >>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} (A:1-288) Probab=81.49 E-value=0.51 Score=26.74 Aligned_cols=13 Identities=23% Similarity=0.348 Sum_probs=5.8 Q ss_pred HHHHHHHHHHHHH Q ss_conf 8889999999999 Q gi|254780286|r 76 MHTIEVSQIARSL 88 (410) Q Consensus 76 tHslEVa~i~rsi 88 (410) .|..-|+|..-.+ T Consensus 87 ~HA~~V~~~~~~l 99 (288) T 1so2_A 87 IHATDVLHAVWYL 99 (288) T ss_dssp HHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999999 No 45 >>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Agrobacterium tumefaciens str} (A:27-207) Probab=80.74 E-value=1.1 Score=24.41 Aligned_cols=34 Identities=24% Similarity=0.100 Sum_probs=28.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC Q ss_conf 6208889999999999988399988999999888628 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiG 109 (410) |=..||..||.++.-++ ++|++-+-.+||.||+| T Consensus 29 sVAeHS~~va~ia~~l~---~~d~~~~~~~aL~HD~~ 62 (181) T 2gz4_A 29 TVAQHCLIVETIFCRMC---PGATPDEMQMALLHDAP 62 (181) T ss_dssp BHHHHHHHHHHHHHHHC---TTCCHHHHHHHHTTTTT T ss_pred CHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHCCCH T ss_conf 19999999999999867---89998999999864779 No 46 >>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str} (A:313-374) Probab=77.57 E-value=0.96 Score=24.71 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=12.0 Q ss_pred HHHHHHHHHHHCC Q ss_conf 8999999888628 Q gi|254780286|r 97 DLVEAIALAHDFG 109 (410) Q Consensus 97 dlvea~~L~HDiG 109 (410) -|+.||||.|||| T Consensus 48 RLr~AAClLsDig 60 (62) T 3hi0_A 48 RYRQAACLLADIS 60 (62) T ss_dssp HHHHHHHHHTTTT T ss_pred HHHHHHHHHHHHH T ss_conf 9999999999850 No 47 >>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, manganese, GDP, PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} (A:1-156) Probab=51.28 E-value=13 Score=16.39 Aligned_cols=11 Identities=36% Similarity=0.579 Sum_probs=4.4 Q ss_pred HHHHHHHHHHH Q ss_conf 88899999999 Q gi|254780286|r 76 MHTIEVSQIAR 86 (410) Q Consensus 76 tHslEVa~i~r 86 (410) .|.++||+|-. T Consensus 52 ~H~l~va~il~ 62 (156) T 1vj7_A 52 VHPIQVAGILA 62 (156) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 99999999998 No 48 >>1ccw_B Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold; HET: TAR CNC; 1.60A {Clostridium cochlearium} (B:410-483) Probab=49.45 E-value=6.1 Score=18.78 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=29.4 Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 88628998865478999999731255457765778875 Q gi|254780286|r 105 AHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVT 142 (410) Q Consensus 105 ~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt 142 (410) -+|.||=||-+.=.+.=++..++-+.+||-.++|.++- T Consensus 21 ~l~~GnlP~~~dik~fh~~kl~eRa~~EgR~~sFqMvi 58 (74) T 1ccw_B 21 YLEFGNVPFTEEIKNYNRERLQERAKFEGRDVSFQMVI 58 (74) T ss_dssp EEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCHHHHH T ss_pred ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH T ss_conf 03467888883789999999999987506517788879 No 49 >>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:) Probab=47.14 E-value=5.6 Score=19.07 Aligned_cols=11 Identities=9% Similarity=0.461 Sum_probs=4.5 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999999 Q gi|254780286|r 338 ANVIRNLFSAY 348 (410) Q Consensus 338 ~~iI~~Lf~~f 348 (410) ..+-+.|++.+ T Consensus 319 ~~lR~~Ll~~~ 329 (445) T 2okc_A 319 ETIRKRLLQDF 329 (445) T ss_dssp HHHHHHHHHHE T ss_pred HHHHHHHHHHC T ss_conf 88999999838 No 50 >>3l4q_A NS1, NS1A, non-structural protein 1; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Influenza a virus} (A:) Probab=45.22 E-value=4.6 Score=19.68 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=21.8 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 65478999999731255457765778875432 Q gi|254780286|r 114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145 (410) Q Consensus 114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE 145 (410) ||.+|++-+..=--.||+|-|-++.|+-..|+ T Consensus 102 Ght~eDVknAigvLIgGleWndNtvrvse~lQ 133 (164) T 3l4q_A 102 GHTAEDVKNAVGVLIGGLEWNDNTVRVSETLQ 133 (164) T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCEEEECHHHH T ss_pred CCCHHHHHHHHHHEECCEEECCCEEEHHHHHH T ss_conf 98617887668744411156596675567788 No 51 >>3d6r_B NS1, NS1A, non-structural protein 1; effector domain, alternative splicing, cytoplasm, HOST-virus interaction; 2.00A {Influenza a virus} (B:) Probab=43.44 E-value=5.1 Score=19.35 Aligned_cols=33 Identities=30% Similarity=0.421 Sum_probs=26.1 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 654789999997312554577657788754321 Q gi|254780286|r 114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC 146 (410) Q Consensus 114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~ 146 (410) ||.+|++-+..=--.||+|-|-++.|+-..|+. T Consensus 96 Ght~eDVknAigvLIgGleWndntvrvse~lQr 128 (158) T 3d6r_B 96 GHSTEDVKNAIGILIGGLEWNDNSIRASENIQR 128 (158) T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCEEEECHHHHH T ss_pred CCCHHHHHHHHHHEECCEEECCCEEEHHHHHHH T ss_conf 986177876687544110465965656678888 No 52 >>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} (A:197-542) Probab=40.89 E-value=7.8 Score=17.98 Aligned_cols=10 Identities=20% Similarity=0.580 Sum_probs=8.1 Q ss_pred CCCCCCCCCH Q ss_conf 2899886547 Q gi|254780286|r 108 FGHPPFGHVG 117 (410) Q Consensus 108 iGhpPFGH~G 117 (410) |||||||... T Consensus 106 i~NPPy~~~~ 115 (346) T 3lkd_A 106 LXNPPYSAKW 115 (346) T ss_dssp EECCCTTCCC T ss_pred EECCCCCCCC T ss_conf 8348877776 No 53 >>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A (A:1-20,A:202-326) Probab=39.13 E-value=10 Score=17.07 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=15.7 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 565544321207989987 Q gi|254780286|r 210 IADDIAYDAHDIDDGVRA 227 (410) Q Consensus 210 aADDIAY~~hDlEDai~~ 227 (410) -.|+|||.+.+-++|++. T Consensus 21 ~~dTIC~AT~~RQ~Av~~ 38 (145) T 3ke8_A 21 RKDDICYATTNRQEAVRA 38 (145) T ss_dssp SSCSCCHHHHHHHHHHHH T ss_pred CCCCEEHHHHHHHHHHHH T ss_conf 747730626879999999 No 54 >>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} (A:309-403,A:464-526) Probab=36.95 E-value=7.3 Score=18.21 Aligned_cols=16 Identities=44% Similarity=1.101 Sum_probs=14.8 Q ss_pred HHHCCCCCCCCCHHHH Q ss_conf 8862899886547899 Q gi|254780286|r 105 AHDFGHPPFGHVGEDV 120 (410) Q Consensus 105 ~HDiGhpPFGH~GE~a 120 (410) +||=+||-+|..|++| T Consensus 54 GHDSaHPDY~~i~~RA 69 (158) T 2zxq_A 54 GHDSGHPDYGDIGQRL 69 (158) T ss_dssp STTSSTTCTTCBCGGG T ss_pred CCCCCCCCHHHHCCCC T ss_conf 8666897523303346 No 55 >>2rhk_A NS1, NS1A, non-structural protein 1; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Influenza a virus} PDB: 2kkz_A 3ee9_A 3ee8_A 2gx9_A (A:) Probab=36.85 E-value=6.1 Score=18.78 Aligned_cols=32 Identities=31% Similarity=0.469 Sum_probs=23.6 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 65478999999731255457765778875432 Q gi|254780286|r 114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145 (410) Q Consensus 114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE 145 (410) ||.+|++-+..=--.||+|-|-++.|+-..|+ T Consensus 85 ght~edvknaigvLIgGleWndntvrvse~lQ 116 (140) T 2rhk_A 85 GHTIEDVKNAIGVLIGGLEWNDNTVRVSKTLQ 116 (140) T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCEEEECHHHH T ss_pred CCCHHHHHHHHHHEECCEEECCCEEEHHHHHH T ss_conf 98607888768754410046596575567788 No 56 >>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} (A:1-108) Probab=33.20 E-value=26 Score=14.11 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=20.8 Q ss_pred CCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 28998865478999999731255 Q gi|254780286|r 108 FGHPPFGHVGEDVLQELLSSYGG 130 (410) Q Consensus 108 iGhpPFGH~GE~al~~~~~~~~g 130 (410) |||-|..+.-|+-|.+.|..+|. T Consensus 8 V~nl~~~~~te~~l~~~F~~~G~ 30 (108) T 1qm9_A 8 VSNLNPERVTPQSLFILFGVYGD 30 (108) T ss_dssp EECCCSSSCCHHHHHHHHHTTCC T ss_pred EECCCCCCCCHHHHHHHHHCCCC T ss_conf 97898577999999998544698 No 57 >>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation, PP2A regulatory subunit; 2.60A {Homo sapiens} (A:293-392) Probab=30.45 E-value=29 Score=13.79 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=13.2 Q ss_pred HHHHHHHHHHCCCCCCCCC Q ss_conf 2478887763475778864 Q gi|254780286|r 156 LTWETLEGLIGHNGPILPQ 174 (410) Q Consensus 156 LT~atL~~iiKyp~~~~~~ 174 (410) ||..++.|++|| ||.+.. T Consensus 1 L~~~vi~~llk~-WP~tns 18 (100) T 2jak_A 1 LTEPVVMALLKY-WPKTHS 18 (100) T ss_dssp GHHHHHHHHHHS-SCSSCC T ss_pred HHHHHHHHHHHH-CCCCCC T ss_conf 289999999983-899882 No 58 >>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A (A:69-133) Probab=30.25 E-value=28 Score=13.88 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=17.5 Q ss_pred ECCCCHHHHHHHHHHHHCCCCC Q ss_conf 0673369999999998188988 Q gi|254780286|r 380 LAGMTDSYAIREHHILFGYIPD 401 (410) Q Consensus 380 IAGMTD~YAi~ly~kL~G~~p~ 401 (410) .+||+=+|..+++++.+|.+|- T Consensus 34 ~~~~S~~~l~r~Fk~~~G~sp~ 55 (65) T 1u8b_A 34 QVAXSPFHLHRLFKATTGXTPK 55 (65) T ss_dssp HHTSCHHHHHHHHHHHTSSCHH T ss_pred HCCCCHHHHHHHHHHHHCCCHH T ss_conf 7199989999999999892999 No 59 >>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} (A:172-385) Probab=29.53 E-value=22 Score=14.62 Aligned_cols=11 Identities=45% Similarity=0.887 Sum_probs=5.2 Q ss_pred CCCCCCCCHHH Q ss_conf 89988654789 Q gi|254780286|r 109 GHPPFGHVGED 119 (410) Q Consensus 109 GhpPFGH~GE~ 119 (410) .||||+|..+. T Consensus 136 ~npP~~~~~~~ 146 (214) T 3ldu_A 136 TNPPYGERLED 146 (214) T ss_dssp ECCCCCCSHHH T ss_pred ECCCCCCCCCC T ss_conf 48982000376 No 60 >>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:) Probab=28.71 E-value=30 Score=13.72 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=19.8 Q ss_pred CCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 28998865478999999731255 Q gi|254780286|r 108 FGHPPFGHVGEDVLQELLSSYGG 130 (410) Q Consensus 108 iGhpPFGH~GE~al~~~~~~~~g 130 (410) |||-|+...-|+-|.+.|..+|. T Consensus 20 V~nl~~~~~~e~~l~~~F~~~G~ 42 (102) T 1x4d_A 20 IMDFQRGKNLRYQLLQLVEPFGV 42 (102) T ss_dssp EESCCCSSSHHHHHHTTTGGGSC T ss_pred EECCCCCCCCHHHHHHHHHHHCC T ss_conf 97899877789999999983287 No 61 >>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} (A:) Probab=27.81 E-value=12 Score=16.54 Aligned_cols=14 Identities=0% Similarity=-0.308 Sum_probs=8.5 Q ss_pred HHHHHHHHHHHHHH Q ss_conf 17986565544321 Q gi|254780286|r 205 GQVAAIADDIAYDA 218 (410) Q Consensus 205 a~iveaADDIAY~~ 218 (410) +.+.|||.-.+... T Consensus 64 tfLiEA~~~~~~~~ 77 (250) T 1o9g_A 64 YLLTVLGLLHRRSL 77 (250) T ss_dssp HHHHHHHHHTGGGE T ss_pred HHHHHHHHHCHHHH T ss_conf 89999988430577 No 62 >>3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus interaction, interferon antiviral system evasion, nucleus, RNA-binding; 2.70A {Influenza virus} PDB: 3f5t_A (A:) Probab=27.54 E-value=11 Score=16.94 Aligned_cols=12 Identities=25% Similarity=0.382 Sum_probs=9.8 Q ss_pred CCCCHHHHHHHH Q ss_conf 100024788877 Q gi|254780286|r 152 DGINLTWETLEG 163 (410) Q Consensus 152 ~GLNLT~atL~~ 163 (410) -||++--||+.| T Consensus 50 lGldie~aT~~G 61 (215) T 3eu6_A 50 LGLDIETATRAG 61 (215) T ss_dssp HTCCHHHHHHHH T ss_pred CCCCCHHHHHHH T ss_conf 442403876767 No 63 >>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} (A:52-105) Probab=24.08 E-value=24 Score=14.37 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=20.2 Q ss_pred CCCCHHHCCCCEEECCHHHHHHCC Q ss_conf 999843400001102734623275 Q gi|254780286|r 35 LTRSEFQRDRDRMIHTTAFRRLKD 58 (410) Q Consensus 35 ~~R~~f~rD~dRIi~S~afRRL~~ 58 (410) -..+.|-+..|+|.|++++..|+. T Consensus 19 ~~~D~~G~RiD~v~~hpawh~L~~ 42 (54) T 3djl_A 19 LRYDAQGRRLDDVRFHPAWHLLMQ 42 (54) T ss_dssp EEECTTSCEEEEEECCHHHHHHHH T ss_pred ECCCCCCCCCCEEEECHHHHHHHH T ss_conf 054999888853765889999999 No 64 >>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structural genomics; 1.50A {Listeria monocytogenes str} (A:178-393) Probab=20.08 E-value=43 Score=12.49 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=3.9 Q ss_pred CCCCCCCCHH Q ss_conf 8998865478 Q gi|254780286|r 109 GHPPFGHVGE 118 (410) Q Consensus 109 GhpPFGH~GE 118 (410) -||||+|..+ T Consensus 136 ~npP~~~~~~ 145 (216) T 3k0b_A 136 ANPPYGERLE 145 (216) T ss_dssp ECCCCCCSHH T ss_pred ECCCCCCCCC T ss_conf 5797100047 Done!