Query         gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 410
No_of_seqs    191 out of 1457
Neff          8.0 
Searched_HMMs 33803
Date          Wed Jun  1 12:05:00 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780286.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >3bg2_A DGTP triphosphohydrola 100.0       0       0  399.4  15.2  258   12-325     3-300 (300)
  2 >2pgs_A Putative deoxyguanosin 100.0       0       0  377.8  11.3  220   14-325     3-239 (239)
  3 >2dqb_A Deoxyguanosinetriphosp 100.0 1.5E-43       0  341.2  22.7  282   25-325     1-282 (282)
  4 >2pgs_A Putative deoxyguanosin 100.0 9.3E-40 2.8E-44  313.1   3.0  175  111-402     1-207 (212)
  5 >3irh_A HD domain protein; pho 100.0 3.4E-39   1E-43  309.0  -6.6  216    3-229    14-246 (247)
  6 >2hek_A Hypothetical protein;  100.0 1.3E-34 3.7E-39  275.2  -3.2  201   35-235    10-220 (221)
  7 >3bg2_A DGTP triphosphohydrola 100.0 2.6E-30 7.6E-35  243.3   6.0   74  326-399    61-142 (144)
  8 >2q14_A Phosphohydrolase; BT42  99.9 1.4E-26   4E-31  215.8  -2.0  147   23-169     3-184 (190)
  9 >2pjq_A Uncharacterized protei  99.8 1.2E-21 3.6E-26  179.2   5.1  187   43-235     2-189 (231)
 10 >2dqb_A Deoxyguanosinetriphosp  99.6 1.1E-15 3.3E-20  135.1   4.4   67  326-396     1-67  (68)
 11 >2pq7_A Predicted HD superfami  99.1 1.4E-10 4.1E-15   97.5   4.4  133   49-222    10-142 (220)
 12 >2o08_A BH1327 protein; NP_242  98.7 5.3E-08 1.6E-12   78.4   8.4  115   68-217    13-133 (134)
 13 >3dto_A BH2835 protein; all al  98.7 5.7E-08 1.7E-12   78.1   7.1  119   55-215     5-125 (126)
 14 >3b57_A LIN1889 protein; Q92AN  98.6 8.3E-08 2.4E-12   76.9   5.7  111   68-219    20-130 (209)
 15 >3gw7_A Uncharacterized protei  98.5   9E-08 2.6E-12   76.7   4.7  115   64-215    16-130 (131)
 16 >2qgs_A Protein Se1688; alpha-  98.5 9.8E-07 2.9E-11   69.0  10.0   59   66-124    18-77  (128)
 17 >2ogi_A Hypothetical protein S  98.4 1.8E-06 5.4E-11   67.0   9.4  128   71-227    24-152 (159)
 18 >3djb_A Hydrolase, HD family;   98.4 1.2E-07 3.5E-12   75.8   3.1   82   61-142    13-94  (126)
 19 >3ccg_A HD superfamily hydrola  98.3   4E-06 1.2E-10   64.5   8.2  113   73-215    19-133 (135)
 20 >3i7a_A Putative metal-depende  97.5 0.00028 8.2E-09   50.9   6.2  133   54-223    14-162 (199)
 21 >3hc1_A Uncharacterized HDOD d  97.3 0.00012 3.5E-09   53.7   2.8  121   72-218    32-159 (220)
 22 >2paq_A 5'-deoxynucleotidase Y  96.3  0.0055 1.6E-07   41.3   4.5   38   72-109    30-73  (201)
 23 >1vqr_A Hypothetical protein C  95.4  0.0074 2.2E-07   40.3   2.0   38   75-112   126-164 (297)
 24 >3kh1_A Predicted metal-depend  95.4   0.015 4.3E-07   38.2   3.4   51   73-123    18-76  (178)
 25 >1u6z_A Exopolyphosphatase; al  93.7   0.093 2.8E-06   32.2   4.3  112   73-217    16-136 (139)
 26 >3ibj_A CGMP-dependent 3',5'-c  93.1   0.086 2.5E-06   32.5   3.3   83   68-170    92-183 (252)
 27 >1taz_A Calcium/calmodulin-dep  92.9    0.12 3.7E-06   31.3   3.9   75   70-145    80-167 (233)
 28 >3hr1_A CAMP and CAMP-inhibite  92.9    0.13 3.9E-06   31.1   4.0   73   70-143    44-126 (156)
 29 >3dyn_A High affinity CGMP-spe  92.8   0.072 2.1E-06   33.0   2.6   60   66-126    69-135 (232)
 30 >3ljx_A MMOQ response regulato  92.6    0.17 4.9E-06   30.3   4.2   34   75-108    13-47  (140)
 31 >3itu_A CGMP-dependent 3',5'-c  92.5    0.11 3.4E-06   31.5   3.3   52   64-116    74-132 (238)
 32 >1xx7_A Oxetanocin-like protei  92.1    0.23 6.9E-06   29.3   4.4   37   73-109     9-50  (156)
 33 >2our_A CAMP and CAMP-inhibite  91.7    0.13 3.8E-06   31.1   2.8   78   66-144    74-161 (190)
 34 >3g4g_A DPDE3, PDE43, CAMP-spe  91.7     0.1 3.1E-06   31.9   2.2   41   71-112   161-208 (324)
 35 >1tbf_A CGMP-specific 3',5'-cy  91.6    0.15 4.4E-06   30.7   3.0   56   69-125    98-160 (257)
 36 >1y2k_A DPDE3, PDE43, CAMP-spe  91.6    0.12 3.6E-06   31.3   2.5   55   70-125    94-155 (258)
 37 >1f0j_A PDE4B, phosphodiestera  90.6    0.18 5.2E-06   30.2   2.5   45   70-115    81-132 (245)
 38 >2cqz_A 177AA long hypothetica  88.8    0.68   2E-05   25.8   4.4   37   73-109    10-51  (131)
 39 >1ynb_A Hypothetical protein A  88.5    0.41 1.2E-05   27.4   3.2   39   71-109    36-77  (173)
 40 >1zkl_A HCP1, TM22, high-affin  87.6    0.11 3.2E-06   31.7  -0.3   43   70-113    81-130 (237)
 41 >3ecm_A High affinity CAMP-spe  87.0    0.18 5.3E-06   30.1   0.6   57   69-126    72-135 (188)
 42 >2r8q_A Class I phosphodiester  83.9    0.36 1.1E-05   27.8   0.9   14  100-113    13-26  (137)
 43 >3bjc_A CGMP-specific 3',5'-cy  83.4     1.2 3.7E-05   23.9   3.5   16  378-393   702-717 (771)
 44 >1so2_A CGMP-inhibited 3',5'-c  81.5    0.51 1.5E-05   26.7   0.9   13   76-88     87-99  (288)
 45 >2gz4_A Hypothetical protein A  80.7     1.1 3.1E-05   24.4   2.3   34   73-109    29-62  (181)
 46 >3hi0_A Putative exopolyphosph  77.6    0.96 2.9E-05   24.7   1.3   13   97-109    48-60  (62)
 47 >1vj7_A Bifunctional RELA/SPOT  51.3      13 0.00038   16.4   2.8   11   76-86     52-62  (156)
 48 >1ccw_B Protein (glutamate mut  49.4     6.1 0.00018   18.8   0.9   38  105-142    21-58  (74)
 49 >2okc_A Type I restriction enz  47.1     5.6 0.00017   19.1   0.4   11  338-348   319-329 (445)
 50 >3l4q_A NS1, NS1A, non-structu  45.2     4.6 0.00014   19.7  -0.2   32  114-145   102-133 (164)
 51 >3d6r_B NS1, NS1A, non-structu  43.4     5.1 0.00015   19.3  -0.2   33  114-146    96-128 (158)
 52 >3lkd_A Type I restriction-mod  40.9     7.8 0.00023   18.0   0.4   10  108-117   106-115 (346)
 53 >3ke8_A 4-hydroxy-3-methylbut-  39.1      10 0.00031   17.1   0.8   18  210-227    21-38  (145)
 54 >2zxq_A Endo-alpha-N-acetylgal  37.0     7.3 0.00022   18.2  -0.3   16  105-120    54-69  (158)
 55 >2rhk_A NS1, NS1A, non-structu  36.8     6.1 0.00018   18.8  -0.7   32  114-145    85-116 (140)
 56 >1qm9_A Polypyrimidine tract-b  33.2      26 0.00078   14.1   2.4   23  108-130     8-30  (108)
 57 >2jak_A Serine/threonine-prote  30.4      29 0.00086   13.8   2.1   18  156-174     1-18  (100)
 58 >1u8b_A ADA polyprotein; prote  30.2      28 0.00083   13.9   1.8   22  380-401    34-55  (65)
 59 >3ldu_A Putative methylase; st  29.5      22 0.00066   14.6   1.2   11  109-119   136-146 (214)
 60 >1x4d_A Matrin 3; structural g  28.7      30 0.00088   13.7   1.7   23  108-130    20-42  (102)
 61 >1o9g_A RRNA methyltransferase  27.8      12 0.00036   16.5  -0.4   14  205-218    64-77  (250)
 62 >3eu6_A NS1, nonstructural pro  27.5      11 0.00032   16.9  -0.7   12  152-163    50-61  (215)
 63 >3djl_A Protein AIDB; alpha he  24.1      24 0.00071   14.4   0.6   24   35-58     19-42  (54)
 64 >3k0b_A Predicted N6-adenine-s  20.1      43  0.0013   12.5   1.2   10  109-118   136-145 (216)

No 1  
>>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217} (A:1-119,A:180-360)
Probab=100.00  E-value=0  Score=399.39  Aligned_cols=258  Identities=26%  Similarity=0.344  Sum_probs=197.8

Q ss_pred             CCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             46585438703337734778889999843400001102734623275747871699987066208889999999999988
Q gi|254780286|r   12 QKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARA   91 (410)
Q Consensus        12 ~~~~~~a~~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~   91 (410)
                      +|..++++.+..+.++......+..|.+|++|++|||+|++||||++||||||+..+|++|||+||||||+++||+|++.
T Consensus         3 ~~~~~~~~~~~~~~~~i~d~v~~~i~~~~~~d~~rii~s~~fqRL~~~~Ql~~~~~~~a~htR~~HSlgV~~la~~~~~~   82 (300)
T 3bg2_A            3 NWEHLLSLKRQGDTAKRLRIEQDDTRLGFEVDYDRIIFSAPFRSLQDKTQVIPLSKTDFVHTRLTHSLEVSVVGRSLGRM   82 (300)
T ss_dssp             CHHHHTCCCCTTCSSCCCGGGCCGGGCHHHHHHHHHHHSHHHHHGGGCBCSCC---CCCCCBHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHCHHHCCCCCCCCCCCCCCCCCCHHHCCCHHHCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             66665061114676577788889989806423118765897762657772514799987717304999999999999999


Q ss_pred             CCCC-------------------HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             3999-------------------889999998886289988654789999997312554577657788754321146701
Q gi|254780286|r   92 LRID-------------------EDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFD  152 (410)
Q Consensus        92 l~~~-------------------~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~  152 (410)
                      ++.+                   .++|++|||+||||                                           
T Consensus        83 l~~~~~~~~~~~~~~~~~~~~~~~~~v~~A~L~HDiG-------------------------------------------  119 (300)
T 3bg2_A           83 VGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIG-------------------------------------------  119 (300)
T ss_dssp             HHHHHHHHSTHHHHTTCCCHHHHHHHHHHHHHHTTTT-------------------------------------------
T ss_pred             HHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHCCCCCC-------------------------------------------
T ss_conf             9999988471123212222343588998850155458-------------------------------------------


Q ss_pred             CCCHHHHHHHHHHCCCCCCCCCCCC------CCCCCH---HHHHHHHHHHCCC-------CCCCCCHHHHHHHHHHHHHH
Q ss_conf             0002478887763475778864445------521001---4577667640223-------13366732179865655443
Q gi|254780286|r  153 GINLTWETLEGLIGHNGPILPQDLD------KPRIIP---RIFSDYYHIHGLS-------LANFASLEGQVAAIADDIAY  216 (410)
Q Consensus       153 GLNLT~atL~~iiKyp~~~~~~~~~------~~~~~~---~~~~~~~~~~~~~-------~~~~~slEa~iveaADDIAY  216 (410)
                        |||||||+|++||||++...+..      |++.+.   ..+.......++.       ....+++++|||||||||||
T Consensus       120 --NLT~atL~ailKYP~~~~~~~~~~~~~~~K~G~f~sE~~~~~~i~~~~gl~~~~~~~~~~~~Rhpl~~iMEaADDIaY  197 (300)
T 3bg2_A          120 --RLSYATLGAFMKYPKESLPHKPSDHIADKKYGFFQSERALFEDVAQELGLLKRSTTDDVSWSRHPLAYLVEAADDICY  197 (300)
T ss_dssp             --CCCHHHHHHHCSSCBCCC-----------CCSCCGGGHHHHHHHHHHHTCCBC----CCBBCCCTTHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             --556999999996486546677655433122465465789988688652032045222335578919999998775511


Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--HHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
Q ss_conf             212079899875306776300156688899--9886548-8998999999999999999997888678778751545467
Q gi|254780286|r  217 DAHDIDDGVRAGLLTVDMLKEISFLEKHIA--SLHDLYG-HLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIH  293 (410)
Q Consensus       217 ~~hDlEDai~~gli~~~~l~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~~~~~~~~~  293 (410)
                      ++||||||+++|+|+++++.+.  +.....  ....... ..+.......++...|+.+|+.++..+..+...       
T Consensus       198 ~i~DLEDai~~glit~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~i~~lv~~~~~~F~~~~~~-------  268 (300)
T 3bg2_A          198 TIIDFEDGINLGLIPEEYALEY--MVKLVGQTIDRNKYNALQETSDRVSYLRALAIGTLINESVDTFMKYEEE-------  268 (300)
T ss_dssp             HHHHHHHHHHHSSSCC---------------------CCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH-------
T ss_pred             CCEEHHHHHHHCCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_conf             0311876665033789999988--9998755556766520014999999899999999999999999996898-------


Q ss_pred             HHHHC--CCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             64426--852111470357999999999999851
Q gi|254780286|r  294 DIRSA--GYRIIDFSDEMTLVDKEIKSMLVKYVY  325 (410)
Q Consensus       294 di~~~--~~~li~fs~~~~~~~k~LK~~l~~~Vy  325 (410)
                       +..+  +..|+.. .+....++.||++++++||
T Consensus       269 -i~~g~~~~~Ll~~-~~~~~~l~~lK~~a~~~Iy  300 (300)
T 3bg2_A          269 -ILAGTFDQSLIDK-SNYQAQITDIINLSIERIY  300 (300)
T ss_dssp             -HHHTCCCSCTGGG-CTTHHHHHHHHHHHHHHTT
T ss_pred             -HHCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCC
T ss_conf             -8525666664477-7999999999999999801


No 2  
>>2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase; deoxyguanosinetriphosphate triphsphohydrolase; 2.35A {Pseudomonas syringae PV} (A:1-113,A:229-354)
Probab=100.00  E-value=0  Score=377.80  Aligned_cols=220  Identities=25%  Similarity=0.283  Sum_probs=187.9

Q ss_pred             CCCCCCCHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf             58543870333773477888999984340000110273462327574787169998706620888999999999998839
Q gi|254780286|r   14 KVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALR   93 (410)
Q Consensus        14 ~~~~a~~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~   93 (410)
                      ..+|++.+.++++|...++..++|++|++|++|||+|++|||||+||||||+..+|++||||||||||+|+||+|+..|+
T Consensus         3 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~d~~rii~s~~frRL~~~~Q~~~~~~~~~~~tR~~Hsl~v~~~a~~~~~~l~   82 (239)
T 2pgs_A            3 LDWQTLLNRERLGKTLHSPEELGRSPFHKDHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEVSCVGRSLGXRVG   82 (239)
T ss_dssp             CCTTTTTCCCBC-------------CHHHHHHHHHHSHHHHGGGGCCCCCC-------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHCCHHHCCCCCCCCCCCCCCCHHHCCHHHHCCHHHHHCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             87564638110388878877889980531511886489776165687054279998880707799999999999999999


Q ss_pred             C--------------CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             9--------------98899999988862899886547899999973125545776577887543211467010002478
Q gi|254780286|r   94 I--------------DEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWE  159 (410)
Q Consensus        94 ~--------------~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~a  159 (410)
                      .              +.++|++|||+|||||-=                                               
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~a~L~HDiGh~~-----------------------------------------------  115 (239)
T 2pgs_A           83 ETLRAALPDWCDPSDLGXVVQSACLAHDIGNRW-----------------------------------------------  115 (239)
T ss_dssp             HHTGGGSCTTCCHHHHHHHHHHHHHHTTTTCBC-----------------------------------------------
T ss_pred             HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCC-----------------------------------------------
T ss_conf             889763700024410788999999872289923-----------------------------------------------


Q ss_pred             HHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             88776347577886444552100145776676402231336673217986565544321207989987530677630015
Q gi|254780286|r  160 TLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEIS  239 (410)
Q Consensus       160 tL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~hDlEDai~~gli~~~~l~~~~  239 (410)
                                                              .+++|||||||||||||++||||||+++|+|+++++.+..
T Consensus       116 ----------------------------------------~r~p~~~ImeaADDIAY~vhDlEDAi~~glit~~~l~~~l  155 (239)
T 2pgs_A          116 ----------------------------------------ARHPLVYLXEAADDICYALIDLEDGLEXDLLDYAEVESLL  155 (239)
T ss_dssp             ----------------------------------------CCCTTHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred             ----------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf             ----------------------------------------3685899999989999899989856651778799999989


Q ss_pred             --HH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             --66-888999886548899899999999999999999788867877875154546764426852111470357999999
Q gi|254780286|r  240 --FL-EKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEI  316 (410)
Q Consensus       240 --~~-~~~~~~~~~~~~~~~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~~~~~~~~~di~~~~~~li~fs~~~~~~~k~L  316 (410)
                        .+ +...+......+.........++++++|+.||++++..+..++..     +.+....+..++.+|+++...++.|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lI~~lV~~~i~~f~~n~~~-----i~~g~~~~~Ll~~~s~e~~~~~k~L  230 (239)
T 2pgs_A          156 LGLVGDDLPETYRQLGPGDSRRRKLAILRGKAIEHLTNAAARAFVEQQDA-----LLAGTLPGDLVEHXHGPAKRCVLNA  230 (239)
T ss_dssp             HTTCC----------------CHHHHHHHHHHHHHHHHHHHHHHTTTSHH-----HHSSCCSSCGGGGSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHCCCCHHHHCCHHHHHHHHHH
T ss_conf             99987778999864031246789999999999999999999999984899-----8721123520432268999999999


Q ss_pred             HHHHHHHHH
Q ss_conf             999999851
Q gi|254780286|r  317 KSMLVKYVY  325 (410)
Q Consensus       317 K~~l~~~Vy  325 (410)
                      |+|++++||
T Consensus       231 K~~~~~~VY  239 (239)
T 2pgs_A          231 KDXARKKIF  239 (239)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHH
T ss_conf             999999974


No 3  
>>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily; 2.20A {Thermus thermophilus HB8} (A:27-308)
Probab=100.00  E-value=1.5e-43  Score=341.19  Aligned_cols=282  Identities=43%  Similarity=0.667  Sum_probs=242.3

Q ss_pred             CCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             77347788899998434000011027346232757478716999870662088899999999999883999889999998
Q gi|254780286|r   25 LGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIAL  104 (410)
Q Consensus        25 ~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L  104 (410)
                      |+|...++-..++++|++|..|||+|++|+||++++|++++.-++++|||++|||+||++|+.+++.++.|+++|++|||
T Consensus         1 r~k~~~d~~~~~i~~~~~~~~~ii~t~~~qRL~~i~Qlg~~~~~~~~htR~eHSlgV~~la~~~~~~l~~~~~lv~~aaL   80 (282)
T 2dqb_A            1 RGRAHPEPESLYRTPYQKDRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRSIARALGLNEDLTEAIAL   80 (282)
T ss_dssp             CCCSSCCCCCSSCCHHHHHHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCHHHCCHHHHCCHHHHHCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             38887888999999133141388648988604678878436999853666789999999999999998520204788887


Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHH
Q ss_conf             88628998865478999999731255457765778875432114670100024788877634757788644455210014
Q gi|254780286|r  105 AHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPR  184 (410)
Q Consensus       105 ~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~  184 (410)
                      .|||||+||||.||.+++.++.+.++|+||+||+|+++.++.......++|||.+++++|++|+++.......       
T Consensus        81 lHDiGh~pfsH~~e~~~~~~~~~~~~~~he~~~~~i~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~~~~-------  153 (282)
T 2dqb_A           81 SHDLGHPPFGHTGEHVLNALXQDHGGFEHNAQALRILTHLEVRYPGFRGLNLTYEVLEGIATHEAAYSPGFKP-------  153 (282)
T ss_dssp             HTTTTCCSSTTHHHHHHHHHTTTTTCCCHHHHHHHHHHTTCBCBTTBSBCCCCHHHHHHHHHSCC---------------
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHH-------
T ss_conf             4222789852139999899876259900207899999755216777798402354454432033222620456-------


Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf             57766764022313366732179865655443212079899875306776300156688899988654889989999999
Q gi|254780286|r  185 IFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLDDKRLVHEL  264 (410)
Q Consensus       185 ~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~hDlEDai~~gli~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  264 (410)
                                 ......+.+++++..||+|+|..+|++||++.|+++.+++.....+......+....+.+.... ....
T Consensus       154 -----------~~~~~~~~~~~~~~daD~~dY~~rD~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~e-~~~~  221 (282)
T 2dqb_A          154 -----------LYEGQGTLEAQVVDLSDAIAYAAHDLDDGFRAGLLHPEELKEVELLQALALEEGLDLLRLPELD-RRVL  221 (282)
T ss_dssp             --------------CCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCGGGGGGSHHHHHHHHHTTCCTTTCCHHH-HHHH
T ss_pred             -----------HHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHH
T ss_conf             -----------7642687789985325428731766888975065778888876788999998754102323888-8878


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999788867877875154546764426852111470357999999999999851
Q gi|254780286|r  265 VRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVY  325 (410)
Q Consensus       265 ~r~~I~~~i~d~i~~s~~~i~~~~~~~~~di~~~~~~li~fs~~~~~~~k~LK~~l~~~Vy  325 (410)
                      .+..+...+.+........+.........+++......+.++++.....+.+|+++.++||
T Consensus       222 ~r~~l~~~vy~h~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~lk~i~~~~iy  282 (282)
T 2dqb_A          222 VRQLLGYFITAAIEATHRRVEEAGVQSAEAVRRHPSRLAALGEEAEKALKALKAFLXERFY  282 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             8875131668889888887520012208988614421332021000002378999999980


No 4  
>>2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase; deoxyguanosinetriphosphate triphsphohydrolase; 2.35A {Pseudomonas syringae PV} (A:114-228,A:355-451)
Probab=100.00  E-value=9.3e-40  Score=313.12  Aligned_cols=175  Identities=21%  Similarity=0.226  Sum_probs=121.5

Q ss_pred             CCCCCCHHHHHHHHHHH-----------------CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf             98865478999999731-----------------2554577657788754321146701000247888776347577886
Q gi|254780286|r  111 PPFGHVGEDVLQELLSS-----------------YGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILP  173 (410)
Q Consensus       111 pPFGH~GE~al~~~~~~-----------------~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~  173 (410)
                      |||||+||+||++||++                 +++||||||||||||+||.+ .+.+|||||||||+||+||||++..
T Consensus         1 PPFGH~GE~aI~~wf~~~~~~~~~~~l~~~~~~D~~~FEGNAQ~lRilt~Le~~-~~~~GlnLT~atL~~ilKYp~~s~~   79 (212)
T 2pgs_A            1 PPFGHSGEDAIRNWFNQAAGRGWLDAXSETERNDFLNFEGNAQGFRVLTQLEYH-QFDGGTRLTYATLGTYLKYPWTARH   79 (212)
T ss_dssp             CTTHHHHHHHHHHHHHHHHTTTTTTTSCHHHHHHHHTCCHHHHHHHHHHTTSSB-TTTTBTCCBHHHHHHHCSSCBBCC-
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             997794899999998861684113221066640136765458886886415335-7886302567753130016865566


Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             44455210014577667640223133667321798656554432120798998753067763001566888999886548
Q gi|254780286|r  174 QDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYG  253 (410)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~hDlEDai~~gli~~~~l~~~~~~~~~~~~~~~~~~  253 (410)
                      .+....  ..+++                                         |++.-|    .+++            
T Consensus        80 ~~~~~~--~~kK~-----------------------------------------g~f~sE----~~~f------------  100 (212)
T 2pgs_A           80 ADSLGY--KKHKF-----------------------------------------GCYQSE----LPIL------------  100 (212)
T ss_dssp             ---------CCCC-----------------------------------------CBCTTT----HHHH------------
T ss_pred             CCCCCC--CCCCC-----------------------------------------HHHHHH----HHHH------------
T ss_conf             543220--00231-----------------------------------------110000----5899------------


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             89989999999999999999978886787787515454676442685211147035799999999999985178999999
Q gi|254780286|r  254 HLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTC  333 (410)
Q Consensus       254 ~~~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~~~~~~~~~di~~~~~~li~fs~~~~~~~k~LK~~l~~~Vy~~~~v~~~  333 (410)
                                      .    ++....                    -++..                 ...+|++|+.+
T Consensus       101 ----------------~----~i~~~~--------------------gl~~~-----------------~~~~~~~v~~~  123 (212)
T 2pgs_A          101 ----------------E----QIAGKL--------------------GLPQL-----------------EEQQDKRKTLH  123 (212)
T ss_dssp             ----------------H----HHHHHH--------------------TCCCC-----------------BTTTCHHHHHH
T ss_pred             ----------------H----HHHHHC--------------------CCCCC-----------------HHCCCHHHHHH
T ss_conf             ----------------9----998762--------------------78430-----------------01068999999


Q ss_pred             HHHHHHHHHHHHHHHHHCHH------HCCCCHHHHH--------HHCCCHHCCCEEEHHEECCCCHHHHHHHHHHHHCC-
Q ss_conf             99999999999999987888------4574106776--------60258000010302000673369999999998188-
Q gi|254780286|r  334 CNQIANVIRNLFSAYMSDPR------KMRGCNQLEY--------ERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGY-  398 (410)
Q Consensus       334 e~~g~~iI~~Lf~~f~~~p~------~l~~~~~~~~--------~~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~G~-  398 (410)
                      |.+|++||.+||+.|++...      .+...++...        ....+.|.++|.|+||||||||+||+++||+|+|+ 
T Consensus       124 El~g~~ii~~LLd~f~~a~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~Y~r~~~v~DyISGMTD~yA~~ly~~l~Gi~  203 (212)
T 2pgs_A          124 EIGAYTTLEILLNAFCGAAVEQFGGRTPSFKHRRILDLLGNSAPDPKAPLHASFLRXIDFIAGXTDSYASEXAREXTGRS  203 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTGGGCCCCTTHHHHHHTTTTSSCCTTSCHHHHHHHHHHHHHTSCHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf             99999999999999988487520113742668999976311055644576779989986410562879999999804939


Q ss_pred             CCCC
Q ss_conf             9885
Q gi|254780286|r  399 IPDF  402 (410)
Q Consensus       399 ~p~~  402 (410)
                      +|+.
T Consensus       204 lp~~  207 (212)
T 2pgs_A          204 GEGH  207 (212)
T ss_dssp             ----
T ss_pred             CCCC
T ss_conf             8987


No 5  
>>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, PSI-2, protein structure initiative; HET: DGT DTP; 2.40A {Enterococcus faecalis V583} PDB: 2o6i_A* (A:1-247)
Probab=100.00  E-value=3.4e-39  Score=308.96  Aligned_cols=216  Identities=13%  Similarity=0.083  Sum_probs=171.5

Q ss_pred             EEECCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEE--ECCCCCCCCCCHHHHHH
Q ss_conf             4311367864658543870333773477888999984340000110273462327574787--16999870662088899
Q gi|254780286|r    3 VVRKLGFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVF--FHRQRDHYRTRLMHTIE   80 (410)
Q Consensus         3 ~~~~~~~~~~~~~~~a~~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf--~~~~~d~~rtRLtHslE   80 (410)
                      ....++..-++++........+++|...+|-..+++.|++|++|||+|++|+||++||||+  ++...+.+|||+||||+
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~k~i~Dpv~g~i~~~~~~~~rIidt~~fqRLr~i~Qlg~~~lv~p~a~htRfeHSLG   93 (247)
T 3irh_A           14 GTENLYFQSNAMTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGAEHSRFSHSLG   93 (247)
T ss_dssp             ------------CCCGGGCEEEEEEEEEETTTEEEEEEEHHHHHHHTSHHHHGGGGSBSSTTGGGTSTTCCCBHHHHHHH
T ss_pred             CCCCCCCHHCCCCCCCCCCCCCCCCEEECCCCCCEEECHHHHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
T ss_conf             73124421100248555445887746846987418958799998629987732255754777766478981472209999


Q ss_pred             HHHHHHHHHHHCCC---------------CHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             99999999988399---------------988999999888628998865478999999731255457765778875432
Q gi|254780286|r   81 VSQIARSLARALRI---------------DEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELE  145 (410)
Q Consensus        81 Va~i~rsi~~~l~~---------------~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE  145 (410)
                      |+++||++++.|+.               ..+++++|||+||||||||||+||+++.+|+.+.++|.+|.++.++++.|+
T Consensus        94 V~~la~~~~~~l~~~~~~~~~~~~~~~~~~~~li~~AaLlHDiGH~PFsH~~E~~~~~~~~~~~~~~~~~~~~~~~~~l~  173 (247)
T 3irh_A           94 VYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAALLHDVGHGPYSHTFEHIFDTNHEAITVQIITSPETEVYQILN  173 (247)
T ss_dssp             HHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHHHHTTTTCCTTHHHHHHHHCCCHHHHHHHHHHCTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999986065211244567778999999999985247660244035431334378999999712256889998


Q ss_pred             HCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             11467010002478887763475778864445521001457766764022313366732179865655443212079899
Q gi|254780286|r  146 CSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGV  225 (410)
Q Consensus       146 ~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~hDlEDai  225 (410)
                      .     .|+|+|.+++++|.||||+......-. ......-.++....    ..+.++ .+.+..+|+|+|+++|+||++
T Consensus       174 ~-----~~~~~~~~v~~~i~~~~~~~~~~~~~s-~~ld~Dr~Dyl~RD----s~~~g~-~~~~~d~drI~~~~~~~ed~l  242 (247)
T 3irh_A          174 R-----VSADFPEKVASVITKQYPNPQVVQMIS-SQIDADRMDYLLRD----AYFTGT-EYGTFDLTRILRVIRPYKGGI  242 (247)
T ss_dssp             H-----HCTTHHHHHHHHHTTCSSCHHHHHHHS-STTCHHHHHHHHHH----HHHHTC-STTCCCHHHHHHHEEEETTEE
T ss_pred             H-----CCCCCHHHHHHHHCCCCCCCHHHHHHC-CCCCCCHHHHHHHH----HHHHCC-CCCCCHHHHHHHHCEECCCEE
T ss_conf             7-----256409999765327875300001201-56340167666403----467514-557625999997476601120


Q ss_pred             HHHH
Q ss_conf             8753
Q gi|254780286|r  226 RAGL  229 (410)
Q Consensus       226 ~~gl  229 (410)
                      ++|+
T Consensus       243 ~~~~  246 (247)
T 3irh_A          243 AFAM  246 (247)
T ss_dssp             EEEG
T ss_pred             EEHH
T ss_conf             2067


No 6  
>>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site and active site being FAR from EACH other, structural genomics; HET: GDP; 2.00A {Aquifex aeolicus} (A:1-221)
Probab=99.97  E-value=1.3e-34  Score=275.16  Aligned_cols=201  Identities=19%  Similarity=0.227  Sum_probs=167.3

Q ss_pred             CCCCHHHCCCCEEECCHHHHHHCCCCEEEEC--CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHCCCC
Q ss_conf             9998434000011027346232757478716--9998706620888999999999998839998-899999988862899
Q gi|254780286|r   35 LTRSEFQRDRDRMIHTTAFRRLKDKTQVFFH--RQRDHYRTRLMHTIEVSQIARSLARALRIDE-DLVEAIALAHDFGHP  111 (410)
Q Consensus        35 ~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~--~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~-dlvea~~L~HDiGhp  111 (410)
                      --|.+|.++..+||.|++|+||+++||+.+.  .-.+..|||++|||+|+++|+.+++.+..+. +++++|||.||||||
T Consensus        10 hg~i~~~~~~~~ii~t~~fqRLr~i~Qlg~~~~v~p~a~htRfeHSLGV~~la~~~~~~l~~~~~~~i~~AaLLHDiGH~   89 (221)
T 2hek_A           10 YGFVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHP   89 (221)
T ss_dssp             TEEEEEEHHHHHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCC
T ss_pred             CCCEECCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
T ss_conf             78886288999981997671545662478563427998366110999999999999999854348899999998612541


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCH---HHH-H
Q ss_conf             886547899999973125545776577887543211467010002478887763475778864445521001---457-7
Q gi|254780286|r  112 PFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIP---RIF-S  187 (410)
Q Consensus       112 PFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~---~~~-~  187 (410)
                      ||||.+|++++.++...++|++|++++|+++.++.......|.++++.+++++.|||++.........-...   ... .
T Consensus        90 PfsH~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ld~D~~Dyl~RD  169 (221)
T 2hek_A           90 PFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIERLVRITLGKPEDEEEKLLSEIITGEFGSDRMDYLRRD  169 (221)
T ss_dssp             SSSSCHHHHSTTSSSCCCHHHHHHHHSHHHHHHHTTSCHHHHHHHHHHHHTCCSSHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHCCCC
T ss_conf             11441245521013211678999720179999987512035999999985245675125588875044211134300321


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHCCHHHH
Q ss_conf             66764022313366732179865655443---2120798998753067763
Q gi|254780286|r  188 DYYHIHGLSLANFASLEGQVAAIADDIAY---DAHDIDDGVRAGLLTVDML  235 (410)
Q Consensus       188 ~~~~~~~~~~~~~~slEa~iveaADDIAY---~~hDlEDai~~gli~~~~l  235 (410)
                      .+....+........+++++|+++|+|||   .++|+||.+.++...++++
T Consensus       170 ~~~~g~~~~~~d~~~l~~~~~~~~d~i~~~~k~~~~ie~~~~~R~~~~~~v  220 (221)
T 2hek_A          170 AYFCGVSYGFFDYDRLISTLRVYENKVVVDESGLRALENFLISRYFMYVQV  220 (221)
T ss_dssp             HHHHTCCSSCCCCHHHHHTEEEETTEEEEEGGGHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             133056667358999998766423001122405999999999999989999


No 7  
>>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217} (A:120-179,A:361-444)
Probab=99.96  E-value=2.6e-30  Score=243.32  Aligned_cols=74  Identities=11%  Similarity=0.008  Sum_probs=63.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHH--------HHCCCHHCCCEEEHHEECCCCHHHHHHHHHHHHC
Q ss_conf             78999999999999999999999878884574106776--------6025800001030200067336999999999818
Q gi|254780286|r  326 RHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEY--------ERDMTDSIKARHVGDYLAGMTDSYAIREHHILFG  397 (410)
Q Consensus       326 ~~~~v~~~e~~g~~iI~~Lf~~f~~~p~~l~~~~~~~~--------~~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~G  397 (410)
                      +|++|+.++.+|++||+.||+.|+++|..++..+....        ....+.+.++|+||||||||||+||+++|++|+|
T Consensus        61 ~~~~v~~~e~~g~~ii~~Lfd~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~V~DyISGMTD~yA~~~y~~L~g  140 (144)
T 3bg2_A           61 NSREVIEKEIAGYEILSTLLEARCRALDNNDTHYNQLIQQLLAPNDHSEKSLYENLIQICAEVSTMTDGKALRNYKKIKG  140 (144)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHC------CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf             88999999999999999999999986763726699999986075320001646645012315327839899999999659


Q ss_pred             CC
Q ss_conf             89
Q gi|254780286|r  398 YI  399 (410)
Q Consensus       398 ~~  399 (410)
                      +.
T Consensus       141 ~~  142 (144)
T 3bg2_A          141 LD  142 (144)
T ss_dssp             C-
T ss_pred             CC
T ss_conf             77


No 8  
>>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:1-190)
Probab=99.91  E-value=1.4e-26  Score=215.78  Aligned_cols=147  Identities=17%  Similarity=0.079  Sum_probs=120.5

Q ss_pred             HCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECC--CCCCCCCCHHHHHHHHHHHHHHHHHCCCC-----
Q ss_conf             33773477888999984340000110273462327574787169--99870662088899999999999883999-----
Q gi|254780286|r   23 QSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHR--QRDHYRTRLMHTIEVSQIARSLARALRID-----   95 (410)
Q Consensus        23 ~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~--~~d~~rtRLtHslEVa~i~rsi~~~l~~~-----   95 (410)
                      .+.+|...+|-..+++.|++|+.|||.|++|+||+++||+.+..  -++.+|||++|||.|+.+|+.+++.++.+     
T Consensus         3 ~~~~k~i~Dpvhg~i~~~~~~~~~Ii~tp~fqRLr~i~Qlg~~~~v~p~a~htRfeHSLGV~~la~~~~~~l~~~~~~~~   82 (190)
T 2q14_A            3 PYERKIINDPVFGFINIPKGLLYDIVRHPLLQRLTRIKQVGLSSVVYPGAQHTRFQHSLGAFYLXSEAITQLTSKGNFIF   82 (190)
T ss_dssp             --CEEEEEETTTEEEEEETTHHHHHHHSHHHHGGGGSBTTTTTTTTCTTCCCBHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             CCCCEEEECCCCCCEEECHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99970786189874896879999872997672006866478776658998447000999999999999999986188888


Q ss_pred             ---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH----------------------CCCCCCCCCHHHHHHHHHHCCC-
Q ss_conf             ---88999999888628998865478999999731----------------------2554577657788754321146-
Q gi|254780286|r   96 ---EDLVEAIALAHDFGHPPFGHVGEDVLQELLSS----------------------YGGFDHNIQSFRIVTELECSYA-  149 (410)
Q Consensus        96 ---~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~----------------------~~gFegNaQ~~Rilt~LE~~~~-  149 (410)
                         ..+|++|||.||||||||||.+|+++++|+..                      ...++||+|.+++++.+..... 
T Consensus        83 ~~~~~~v~~AaLLHDiGH~PFsH~~E~~~~~~~~he~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~~~~~~~ld~  162 (190)
T 2q14_A           83 DSEAEAVQAAILLHDIGHGPFSHVLEDTIVQGVSHEEISLXLXERXNKEXNGQLSLAIQIFKDEYPKRFLHQLVSGQLDX  162 (190)
T ss_dssp             HHHHHHHHHHHHHTTTTCCTTHHHHHTTTSTTCCHHHHHHHHHHHHHHHTTTTTHHHHHHHTTCSSSTHHHHHHSSTTCH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCC
T ss_conf             78999999999987158641012267775048750568999999876642520556775405776401788870488562


Q ss_pred             C--CCCCCHHHHHHHHHHCCCC
Q ss_conf             7--0100024788877634757
Q gi|254780286|r  150 D--FDGINLTWETLEGLIGHNG  169 (410)
Q Consensus       150 ~--~~GLNLT~atL~~iiKyp~  169 (410)
                      +  -.+||.+|+|..++.||+.
T Consensus       163 Dr~Dyl~RDs~~~g~~~g~~d~  184 (190)
T 2q14_A          163 DRLDYLRRDSFYTGVTEGNIGS  184 (190)
T ss_dssp             HHHHHHHHHHHHHCCGGGCCCH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCH
T ss_conf             1687776778874666676229


No 9  
>>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} (A:)
Probab=99.84  E-value=1.2e-21  Score=179.21  Aligned_cols=187  Identities=15%  Similarity=0.074  Sum_probs=127.9

Q ss_pred             CCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             00011027346232757478716999870662088899999999999883999889999998886289988654789999
Q gi|254780286|r   43 DRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQ  122 (410)
Q Consensus        43 D~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~  122 (410)
                      -|||||+|+.|+||+.+||||+  .+++.+||+|||++|+++|+.||+.+++|++++++|||.||||+|||||.||..+.
T Consensus         2 ~r~r~i~~~~~~~l~~~~~~~~--~~~~~~~r~~Hsl~V~~~a~~ia~~~~~d~~~~~~AaLlHDIGk~~~~~~~e~~~~   79 (231)
T 2pjq_A            2 AGDPXITETQLTAIQTYALQKL--AHDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKLXANPAKAHQ   79 (231)
T ss_dssp             ----CCCHHHHHHHHHHHHTSS--TTCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC---------CHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH--CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             9870404999999999999984--56977678799999999999999884999999999999975212113588677899


Q ss_pred             HHHHHCCCCCCCCCHHHHH-HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCC
Q ss_conf             9973125545776577887-543211467010002478887763475778864445521001457766764022313366
Q gi|254780286|r  123 ELLSSYGGFDHNIQSFRIV-TELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFA  201 (410)
Q Consensus       123 ~~~~~~~gFegNaQ~~Ril-t~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (410)
                      .|.+...++..+.+-...+ .-+........+.|++..++.+.+++......    ........................
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~~I~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~  155 (231)
T 2pjq_A           80 DLIVQLNAQNVTADDQTAIFAIIDHXSFSKSFNGPQKLSLEGQVVQDADRLD----AIGAIGIARALYYSGHVGEKIYDP  155 (231)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHTSCCTGGGGGCCCCCCSHHHHHHHHHHHT----TSHHHHHHHHHHHHHHHTCCSCCT
T ss_pred             HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH----HCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             9999987199898999999999994898823678987689999999888987----432177999999988608866686


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf             7321798656554432120798998753067763
Q gi|254780286|r  202 SLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDML  235 (410)
Q Consensus       202 slEa~iveaADDIAY~~hDlEDai~~gli~~~~l  235 (410)
                      +.+...+..++++++...+..+....+++...+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (231)
T 2pjq_A          156 AIAPREHXTREQYRHQPGTAINHFYEKLFKLAAL  189 (231)
T ss_dssp             TSCCCSSCCHHHHHHSCCCTTHHHHHTGGGHHHH
T ss_pred             CCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             5566654347776318851889999999977876


No 10 
>>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily; 2.20A {Thermus thermophilus HB8} (A:309-376)
Probab=99.58  E-value=1.1e-15  Score=135.10  Aligned_cols=67  Identities=30%  Similarity=0.464  Sum_probs=60.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHCCCHHCCCEEEHHEECCCCHHHHHHHHHHHH
Q ss_conf             78999999999999999999999878884574106776602580000103020006733699999999981
Q gi|254780286|r  326 RHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILF  396 (410)
Q Consensus       326 ~~~~v~~~e~~g~~iI~~Lf~~f~~~p~~l~~~~~~~~~~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~  396 (410)
                      +||.|+..+.+|.+||++||+.|+++|+.||..|+..    .++..+.|+||||||||||+||+++|++||
T Consensus         1 r~p~v~~~~~k~~~ii~~Lf~~~~~~p~~lP~~~~~~----~~~~~~~R~V~DYIAGMTDryAi~~y~~lf   67 (68)
T 2dqb_A            1 RHPEVLRERRKAEAVLEGLFAAYTRYPELLPREVQAK----IPEEGLERAVCDYIAGXTDRFALEAYRRLS   67 (68)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHTT----HHHHCHHHHHHHHHHTCCHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHH----CCCCCHHEEEEEECCCCHHHHHHHHHHHCC
T ss_conf             8999999999999999999999985998589999963----677663407412322671889999999719


No 11 
>>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} (A:)
Probab=99.06  E-value=1.4e-10  Score=97.47  Aligned_cols=133  Identities=17%  Similarity=0.108  Sum_probs=101.5

Q ss_pred             CCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             27346232757478716999870662088899999999999883999889999998886289988654789999997312
Q gi|254780286|r   49 HTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSY  128 (410)
Q Consensus        49 ~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~  128 (410)
                      +-..|+|+...+|++ +...+..++++.||+.|+.+|+.||+.+++|++++.+|||.||||+++++|.+++....-    
T Consensus        10 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~Hs~~V~~~a~~ia~~l~ld~~~l~~aaLlHDiGk~~~~~~~~~~~~~~----   84 (220)
T 2pq7_A           10 RIPHLREILNIVREA-FKDYDDPAHDISHTFRVXENASEIASREKCDLQKAIIAALLHDIKRPHEALTGVDHAESG----   84 (220)
T ss_dssp             HSTTHHHHHHHHHHH-HTTCCCTTTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHHHHHHCCCHHHHH----
T ss_pred             HHHHHHHHHHHHHHH-HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHH----
T ss_conf             719999999999999-744899875669999999999999988498999999999987642022057765689999----


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             55457765778875432114670100024788877634757788644455210014577667640223133667321798
Q gi|254780286|r  129 GGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVA  208 (410)
Q Consensus       129 ~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iv  208 (410)
                           ...+-.++....      .-...+-+++..+.+|+++..+..                         .+++++++
T Consensus        85 -----~~~~~~~l~~~~------~~~~~~~~v~~h~e~~~~~~~~~~-------------------------~~~~a~ii  128 (220)
T 2pq7_A           85 -----AEYASGLLPTXG------FDISFVAEVSKAIRSHRYSGGLTP-------------------------TSLTGKIL  128 (220)
T ss_dssp             -----HHHHHHHGGGGT------CCHHHHHHHHHHHHHCC-----CC-------------------------CSHHHHHH
T ss_pred             -----HHHHHHHHHHCC------CCHHHHHHHHHHHHHHCCCCCCCC-------------------------CCHHHHHH
T ss_conf             -----999999898769------999999999999998187557776-------------------------67899999


Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             65655443212079
Q gi|254780286|r  209 AIADDIAYDAHDID  222 (410)
Q Consensus       209 eaADDIAY~~hDlE  222 (410)
                      ..||.+....-+-.
T Consensus       129 ~~aD~~d~~~~~~~  142 (220)
T 2pq7_A          129 QDADRLDAIGAVAI  142 (220)
T ss_dssp             HHHHHGGGSSHHHH
T ss_pred             HHHHHHHHCCCCCH
T ss_conf             99999810565103


No 12 
>>2o08_A BH1327 protein; NP_242193.1, hypothetical protein, structural genomics, joint center for structural genomics, JCSG, PSI-2; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} (A:1-134)
Probab=98.74  E-value=5.3e-08  Score=78.37  Aligned_cols=115  Identities=23%  Similarity=0.139  Sum_probs=91.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC------CCCCCCCHHHHH
Q ss_conf             98706620888999999999998839998899999988862899886547899999973125------545776577887
Q gi|254780286|r   68 RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG------GFDHNIQSFRIV  141 (410)
Q Consensus        68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~------gFegNaQ~~Ril  141 (410)
                      ...-.++..||+.|+.+++.||+.++++++.+..|||.||||..++.+..++.+........      .+.|..-|.+++
T Consensus        13 ~~~~~~~~~Hs~~Va~~a~~la~~~~ld~~~~~~aalLHDiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~g~~~l   92 (134)
T 2o08_A           13 PHLTEHRYQHTIGVXETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEXRTLIREKLSQQDILFYGDELLHAPCGAYYV   92 (134)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGSHHHHHHHHH
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             86784342699999999999999909399999999999860565686999999863799556999754322799999999


Q ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             5432114670100024788877634757788644455210014577667640223133667321798656554432
Q gi|254780286|r  142 TELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYD  217 (410)
Q Consensus       142 t~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~  217 (410)
                      .+.        +.++.-.+..++..|-++..+                           .++|++|+.+||.++..
T Consensus        93 ~~~--------~~~~~~~v~~~i~~h~~~~~~---------------------------~~~~~~Il~~aD~~dal  133 (134)
T 2o08_A           93 REE--------VGIEDEDVLQAIRFHTTGRPN---------------------------XSLLEKIIFLADYIEPN  133 (134)
T ss_dssp             HHH--------HCCCCHHHHHHHHTTTTCCTT---------------------------CCHHHHHHHHHHHHSTT
T ss_pred             HHH--------CCCCHHHHHHHHHHHCCCCCC---------------------------CCCHHHHHHHHHHCCCC
T ss_conf             988--------189809999999975889999---------------------------87177898988524641


No 13 
>>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} (A:1-126)
Probab=98.68  E-value=5.7e-08  Score=78.14  Aligned_cols=119  Identities=15%  Similarity=0.073  Sum_probs=86.1

Q ss_pred             HHCCCCEEEE--CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             3275747871--69998706620888999999999998839998899999988862899886547899999973125545
Q gi|254780286|r   55 RLKDKTQVFF--HRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFD  132 (410)
Q Consensus        55 RL~~KTQVf~--~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFe  132 (410)
                      ++-++++.+.  .-...+..++++||+.|+++++.||+.+|+|++++.+|||.||||..+..+.++........-.....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~Hs~~Va~~a~~ia~~~g~~~~~l~~aallHDIG~~~~~~~~~~~~~~~~~~~~~~~   84 (126)
T 3dto_A            5 AILQSAEAWVKKQLXDEYSGHDWYHIRRVTLXAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAKQQLIDWXEAAG   84 (126)
T ss_dssp             HHHHHHHHHHHHTTTTC----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC-------CHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf             99999999999997368887787999999999999998849999999999997203013457773768999999998779


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             77657788754321146701000247888776347577886444552100145776676402231336673217986565
Q gi|254780286|r  133 HNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIAD  212 (410)
Q Consensus       133 gNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaAD  212 (410)
                      -                   ..++.-.+..+|.-|.+|..-.                       ...-|++++|+-.||
T Consensus        85 ~-------------------~~~~~~~v~~~I~~H~~~~~~~-----------------------~~~~t~~~~ii~~AD  122 (126)
T 3dto_A           85 V-------------------PSQKIDHTXDIINTISFKGGHG-----------------------QSLATREAXVVQDAD  122 (126)
T ss_dssp             C-------------------CHHHHHHHHHHHHCC---------------------------------CCHHHHHHHHHH
T ss_pred             C-------------------CHHHHHHHHHHHHHHHCCCCCC-----------------------CCCCCHHHHHHHHHH
T ss_conf             9-------------------9999999999999976426889-----------------------999999999999989


Q ss_pred             HHH
Q ss_conf             544
Q gi|254780286|r  213 DIA  215 (410)
Q Consensus       213 DIA  215 (410)
                      -++
T Consensus       123 ~~d  125 (126)
T 3dto_A          123 RLD  125 (126)
T ss_dssp             HGG
T ss_pred             HHH
T ss_conf             986


No 14 
>>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} (A:)
Probab=98.59  E-value=8.3e-08  Score=76.95  Aligned_cols=111  Identities=12%  Similarity=0.041  Sum_probs=77.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf             98706620888999999999998839998899999988862899886547899999973125545776577887543211
Q gi|254780286|r   68 RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECS  147 (410)
Q Consensus        68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~  147 (410)
                      ...-.+|.+||+.|+.++..||+.+++|++++..|||.||||..+++|.++.....+..-......              
T Consensus        20 ~~~~~~~~~Hs~~Va~~a~~ia~~lg~d~~~l~~AalLHDiGk~~~~~~~~~~~~~~~~~~~~~~~--------------   85 (209)
T 3b57_A           20 NETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIKLTTDEQEATKTLINWXETKEI--------------   85 (209)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC-------CHHHHHHHHHHHHTTC--------------
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC--------------
T ss_conf             799887989999999999999988599899999999975413345787455668999999987899--------------


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             467010002478887763475778864445521001457766764022313366732179865655443212
Q gi|254780286|r  148 YADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAH  219 (410)
Q Consensus       148 ~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~h  219 (410)
                           |.++.-.+..+|.-|-.......                      ....+.++.|+..+|.+.-...
T Consensus        86 -----~~~~~~~v~~~I~~Hhe~~~g~g----------------------~p~~~~~~~i~~~~d~~~~~~~  130 (209)
T 3b57_A           86 -----PSELIKKIIRIIQSVSFKKGKNT----------------------FKALTIEEKIVQDADRLDAIGA  130 (209)
T ss_dssp             -----CHHHHHHHHHHHHHHC-------------------------------CCCHHHHHHHHHHHHTTSHH
T ss_pred             -----CHHHHHHHHHHHHHHHHCCCCCC----------------------CCCCCHHHHHHHHHHHHHHCCC
T ss_conf             -----99999999999998774035788----------------------8975789999997888860376


No 15 
>>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} (A:1-131)
Probab=98.54  E-value=9e-08  Score=76.69  Aligned_cols=115  Identities=16%  Similarity=0.067  Sum_probs=79.5

Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             16999870662088899999999999883999889999998886289988654789999997312554577657788754
Q gi|254780286|r   64 FHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTE  143 (410)
Q Consensus        64 ~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~  143 (410)
                      .........+++.||+.|+.++..||+.+++|++++..+||.||||..+.-+.+...-...-.+        ..-.+...
T Consensus        16 ~~~~~~~~~~~~~H~~~V~~~a~~ia~~~~~d~~~l~~aallHDiG~~~~~~~~~~~~~~~~~~--------~~~~~~~~   87 (131)
T 3gw7_A           16 NHHQHQDAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQRSSILAAE--------ETRRLLRE   87 (131)
T ss_dssp             CC---------CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC--------CCSSHHHHH--------HHHHHHHH
T ss_pred             HHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCCCHHHHHHHHH--------HHHHHHHH
T ss_conf             9862688767879999999999999987498899999999973433131268721025777999--------99999986


Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             321146701000247888776347577886444552100145776676402231336673217986565544
Q gi|254780286|r  144 LECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIA  215 (410)
Q Consensus       144 LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIA  215 (410)
                      .    .-..+.+.+-.++.+|..|.++....                         ..+++++|+..||.+.
T Consensus        88 ~----~~~~~~~~~~~v~~~I~~H~~~~~~~-------------------------~~~~~~~Iv~~AD~~d  130 (131)
T 3gw7_A           88 E----FEQFPAEKIEAVCHAIAAHSFSAQIA-------------------------PLTTEAKIVQDADRLE  130 (131)
T ss_dssp             H----TTSSCTTTTTSTTTGGGSSCTTSCCC-------------------------CCSHHHHHHHHHTGGG
T ss_pred             H----CCCCCHHHHHHHHHHHHHHCCCCCCC-------------------------CCCHHHHHHHHHHHHH
T ss_conf             4----14899999999999998532578988-------------------------7635899999988886


No 16 
>>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Staphylococcus epidermidis atcc 12228} (A:1-128)
Probab=98.54  E-value=9.8e-07  Score=69.03  Aligned_cols=59  Identities=22%  Similarity=0.098  Sum_probs=52.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             99987066208889999999999988399-988999999888628998865478999999
Q gi|254780286|r   66 RQRDHYRTRLMHTIEVSQIARSLARALRI-DEDLVEAIALAHDFGHPPFGHVGEDVLQEL  124 (410)
Q Consensus        66 ~~~d~~rtRLtHslEVa~i~rsi~~~l~~-~~dlvea~~L~HDiGhpPFGH~GE~al~~~  124 (410)
                      ...++..+.+.||+.|+.+|..||+.+++ +++++..+||.||||..+.+|.++.+....
T Consensus        18 ~~~~~~~~~~~Hs~~Va~la~~la~~l~~~~~~ll~~aaLlHDiG~~~~~~~~~~~~~~~   77 (128)
T 2qgs_A           18 HQHDTTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSKLTDEILAYDQLK   77 (128)
T ss_dssp             TTTCSSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCCSSSCHHHHHHHHH
T ss_pred             HCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf             628988778799999999999999884987399999999986214312354278899999


No 17 
>>2ogi_A Hypothetical protein SAG1661; NP_688652.1, conserved hypothetical protein TIGR00488, structural genomics; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} (A:1-159)
Probab=98.44  E-value=1.8e-06  Score=66.99  Aligned_cols=128  Identities=14%  Similarity=0.035  Sum_probs=80.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC
Q ss_conf             06620888999999999998839998899999988862899886547899999973125545776577887543211467
Q gi|254780286|r   71 YRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYAD  150 (410)
Q Consensus        71 ~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~  150 (410)
                      -..+..||+.||.+++.||+.++++++.+..+||.||||..+..+...+...+....  .+....+-.+....+......
T Consensus        24 ~~~~~~Hs~~va~~a~~ia~~~~~~~~~~~~a~lLHDIGk~~~~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~~~~~l~  101 (159)
T 2ogi_A           24 SDKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQPD--PDLKKWGNNIWHGLVGIYKIQ  101 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTCCHHHHHHHHHHHCCC--TGGGGSCHHHHHHHTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCC--CHHHHHHHCCCHHHHHHHHHH
T ss_conf             824649999999999999999791999999999999816646879999998754897--439887400100388999986


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf             0100024788877634757788644455210014577667640223133667321798656554-4321207989987
Q gi|254780286|r  151 FDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDI-AYDAHDIDDGVRA  227 (410)
Q Consensus       151 ~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDI-AY~~hDlEDai~~  227 (410)
                      .. -++.......++.|..+-.+                          ..+++++|+-+||.+ ++...+--+-++.
T Consensus       102 ~~-~~~~~~~~~~~~~hh~~~~~--------------------------~~~~~a~ii~~AD~~d~~~~~~~~~~l~~  152 (159)
T 2ogi_A          102 ED-LAIKDQDILAAIAKHTVGSA--------------------------QXSTLDKIVYVADYIEHNRDFPGVEEARE  152 (159)
T ss_dssp             HH-SCCCCHHHHHHHHTTTTCCS--------------------------SCCHHHHHHHHHHHHCTTCCSTTHHHHHH
T ss_pred             HH-CCCCCHHHHHHHHHCCCCCC--------------------------CCCCHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf             32-59997999999996188999--------------------------85469999999998623799862999999


No 18 
>>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} (A:1-126)
Probab=98.43  E-value=1.2e-07  Score=75.78  Aligned_cols=82  Identities=17%  Similarity=0.108  Sum_probs=61.7

Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             78716999870662088899999999999883999889999998886289988654789999997312554577657788
Q gi|254780286|r   61 QVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRI  140 (410)
Q Consensus        61 QVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Ri  140 (410)
                      ++.......+..+|..||+.|++++..||+.+++|++++.++||.||||..+.++..+.....-.+-...+.-+.+-.++
T Consensus        13 ~l~~~~~~~~~~~~~~H~~~V~~~a~~la~~~~~d~~~~~~aallHDiGk~~~~~~~~~h~~~~~~~l~~~~~~~~~~~~   92 (126)
T 3djb_A           13 FVKHILEKDASGHDWYHIRRVHKXAISLSEQEGGNRFIIEXAALLHDVADEKLNESEEAGXKKVSDWLEELHVEEEESKH   92 (126)
T ss_dssp             HHHHHTTSSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--CCSSSTTTHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             99998707987788699999999999999884998999999999974043001340777899999999887989999999


Q ss_pred             HH
Q ss_conf             75
Q gi|254780286|r  141 VT  142 (410)
Q Consensus       141 lt  142 (410)
                      +.
T Consensus        93 i~   94 (126)
T 3djb_A           93 VL   94 (126)
T ss_dssp             HH
T ss_pred             HH
T ss_conf             99


No 19 
>>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} (A:1-135)
Probab=98.29  E-value=4e-06  Score=64.46  Aligned_cols=113  Identities=18%  Similarity=0.076  Sum_probs=77.5

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC--CCCCCCCHHHHHHHHHHCCCC
Q ss_conf             620888999999999998839998899999988862899886547899999973125--545776577887543211467
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG--GFDHNIQSFRIVTELECSYAD  150 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~--gFegNaQ~~Rilt~LE~~~~~  150 (410)
                      .+.-||+.||.+++.||+.+++|++.+..|||.||||-......--........+..  .-.|...|.++|..+....  
T Consensus        19 ~~~~Hs~~Va~la~~ia~~l~ld~~~~~~aaLlHDIGk~~~~~~~~~~~~~l~~~~~~~~~~h~~~g~~~l~~~~~~~--   96 (135)
T 3ccg_A           19 KRYKHSLGVXDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIEICTNEGYELGDEDIRNSYLLHGLAGRILAKK--   96 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHTTCCCCHHHHTTTTC-CHHHHHHHHHH--
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCHHHHHHHHHHH--
T ss_conf             072899999999999999829499999999999985354686999998875367314999986732247999999875--


Q ss_pred             CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             01000247888776347577886444552100145776676402231336673217986565544
Q gi|254780286|r  151 FDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIA  215 (410)
Q Consensus       151 ~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIA  215 (410)
                       ..++..-...+++..|..+.                           ...+++++|+-+||.++
T Consensus        97 -~~~~~~e~~~~~~~~~~~~~---------------------------~~~~~~a~Ii~~AD~~d  133 (135)
T 3ccg_A           97 -VIGIDDEDVLNAIEFHTTGR---------------------------PNXSLLEKIIYIADYIE  133 (135)
T ss_dssp             -TTCCCCHHHHHHHHTTTTCC---------------------------SSCCHHHHHHHHHHHHS
T ss_pred             -HCCCCHHHHHHHHHHHCCCC---------------------------CCCCHHHHHHHHHHHHC
T ss_conf             -43687599999999728899---------------------------99687999999999716


No 20 
>>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, structural genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} (A:1-23,A:106-281)
Probab=97.49  E-value=0.00028  Score=50.90  Aligned_cols=133  Identities=15%  Similarity=0.063  Sum_probs=82.3

Q ss_pred             HHHCCCCEEEECCCCCCCCCC----HHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             232757478716999870662----088899999999999883-------999889999998886289988654789999
Q gi|254780286|r   54 RRLKDKTQVFFHRQRDHYRTR----LMHTIEVSQIARSLARAL-------RIDEDLVEAIALAHDFGHPPFGHVGEDVLQ  122 (410)
Q Consensus        54 RRL~~KTQVf~~~~~d~~rtR----LtHslEVa~i~rsi~~~l-------~~~~dlvea~~L~HDiGhpPFGH~GE~al~  122 (410)
                      ..|.+..-+  +..++.++.+    -.||+.||.+++.||+.+       +.+++.+-.+||.||||.++.-..-.+.-.
T Consensus        14 ~~~~~~~~~--~s~~~~~~~~~~~~w~HS~~va~~a~~ia~~l~l~~~~~~~~~~~a~~agLLHDIGk~~~~~~~~~~~~   91 (199)
T 3i7a_A           14 KKLKDDALI--LSTNEXVWEVXDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALPVLTEAEAHPE   91 (199)
T ss_dssp             HHHHTTCSC--CCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHHHHHHHHHCGG
T ss_pred             HHHHHCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf             999838888--947705567899999999999999999999962347533136999998551530148999888587676


Q ss_pred             -----HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             -----997312554577657788754321146701000247888776347577886444552100145776676402231
Q gi|254780286|r  123 -----ELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSL  197 (410)
Q Consensus       123 -----~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (410)
                           +|-....++.|...|..++.+          .++.-....+|.-|..+....                       
T Consensus        92 ~~~~~e~e~~~~~~~H~~~ga~ll~~----------w~~p~~i~~~I~~Hhe~~d~~-----------------------  138 (199)
T 3i7a_A           92 XFTTIEHLRSLVRKXQGPIGRAVLKS----------WDFAPEVXEVVERWADLPYLG-----------------------  138 (199)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHHHHHHH----------TTCCHHHHHHHHHTTCTTCCC-----------------------
T ss_pred             HCCHHHHHHHHHCCCHHHHHHHHHHH----------CCCCHHHHHHHHHHCCCCCCC-----------------------
T ss_conf             44679999998652278999999987----------599999999999870855477-----------------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             33667321798656554432120798
Q gi|254780286|r  198 ANFASLEGQVAAIADDIAYDAHDIDD  223 (410)
Q Consensus       198 ~~~~slEa~iveaADDIAY~~hDlED  223 (410)
                        ..+.++.|+.+||.++-.+..-.+
T Consensus       139 --~~~~l~~ii~lAd~~~~l~~~~~~  162 (199)
T 3i7a_A          139 --DHVSYLDFIRAAAFYTGELRAGNE  162 (199)
T ss_dssp             --SSCCHHHHHHHHHHHHTSSCCGGG
T ss_pred             --CCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             --531299999999999865378876


No 21 
>>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, structural genomics; 1.90A {Geobacter sulfurreducens} (A:1-25,A:111-305)
Probab=97.35  E-value=0.00012  Score=53.67  Aligned_cols=121  Identities=17%  Similarity=0.074  Sum_probs=69.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCC----CCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             66208889999999999988399-98899999988862899----88654789999997312554577657788754321
Q gi|254780286|r   72 RTRLMHTIEVSQIARSLARALRI-DEDLVEAIALAHDFGHP----PFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC  146 (410)
Q Consensus        72 rtRLtHslEVa~i~rsi~~~l~~-~~dlvea~~L~HDiGhp----PFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~  146 (410)
                      -++.-||+.||.+++.||+.+++ +++++..++|.||||-.    .|++..+..........+.+          +..|.
T Consensus        32 ~~~~~HS~~vA~~A~~iA~~l~~~d~e~a~~agLLHDIGk~~l~~~~~~~~~~~~~~~~~~~~~l----------~~~E~  101 (220)
T 3hc1_A           32 STLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTLVDEEKITF----------GQAEE  101 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHHHHHHCCCH----------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH----------HHHHH
T ss_conf             88899999999999999998036899999999999846999997766698999999986579998----------99999


Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHH--HHHHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             1467010002478887763475778864445521001457766--76402231336673217986565544321
Q gi|254780286|r  147 SYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDY--YHIHGLSLANFASLEGQVAAIADDIAYDA  218 (410)
Q Consensus       147 ~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~slEa~iveaADDIAY~~  218 (410)
                           .=+..+.+.+++.+.-.|...+.           ....  ..-..+.....++..+.++-+||.++=..
T Consensus       102 -----~~~~~~h~~~g~~l~~~~~~p~~-----------i~~~I~~Hhe~~~~~~~~~~la~~v~iAd~~~~~~  159 (220)
T 3hc1_A          102 -----RLFGTSHCEVGFALAKRWSLNEF-----------ICDTILYHHDIEAVPYKQAAIVAXVAFADEYCTLR  159 (220)
T ss_dssp             -----HHHSSCHHHHHHHHHHHTTCCHH-----------HHHHHHHTTCGGGCSSSCCHHHHHHHHHHHHHHHT
T ss_pred             -----HHHCCCHHHHHHHHHHHCCCCHH-----------HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             -----99688999999999998699999-----------99999986592427755035979999999999970


No 22 
>>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphohydrolase, structural genomics, PSI, protein structure initiative; 2.10A {Escherichia coli K12} (A:)
Probab=96.32  E-value=0.0055  Score=41.30  Aligned_cols=38  Identities=21%  Similarity=0.363  Sum_probs=33.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHCC
Q ss_conf             662088899999999999883------99988999999888628
Q gi|254780286|r   72 RTRLMHTIEVSQIARSLARAL------RIDEDLVEAIALAHDFG  109 (410)
Q Consensus        72 rtRLtHslEVa~i~rsi~~~l------~~~~dlvea~~L~HDiG  109 (410)
                      -|-..||+.||.+++.||..+      ++|.+.+-.+||.||||
T Consensus        30 esva~Hs~~Va~la~~la~~l~~~~~~~id~~~~~~~aLlHDig   73 (201)
T 2paq_A           30 ENVSEHSLQVAXVAHALAAIKNRKFGGNVNAERIALLAXYHDAS   73 (201)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             78999999999999999878877346677999999999970069


No 23 
>>1vqr_A Hypothetical protein CJ0248; 6967725, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.25A {Campylobacter jejuni subsp} (A:)
Probab=95.41  E-value=0.0074  Score=40.33  Aligned_cols=38  Identities=13%  Similarity=-0.033  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCC
Q ss_conf             08889999999999988399-988999999888628998
Q gi|254780286|r   75 LMHTIEVSQIARSLARALRI-DEDLVEAIALAHDFGHPP  112 (410)
Q Consensus        75 LtHslEVa~i~rsi~~~l~~-~~dlvea~~L~HDiGhpP  112 (410)
                      ..||+.||.+++.+|+.++. +++++..+||.||||=..
T Consensus       126 ~~hs~~~A~la~~la~~l~~~~~~~~~~agllhdiGkl~  164 (297)
T 1vqr_A          126 LKTCNEEATFIANWLNDEDKKLSHLLVPCAXLLRLGIVI  164 (297)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHH
T ss_conf             999789999999998762542689999867775302999


No 24 
>>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} (A:23-200)
Probab=95.38  E-value=0.015  Score=38.17  Aligned_cols=51  Identities=20%  Similarity=0.160  Sum_probs=39.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHCC------CCCCCCCHHHHHHH
Q ss_conf             620888999999999998839--9988999999888628------99886547899999
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARALR--IDEDLVEAIALAHDFG------HPPFGHVGEDVLQE  123 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~l~--~~~dlvea~~L~HDiG------hpPFGH~GE~al~~  123 (410)
                      |=..||.-||.+|..||..++  +|.+.|-..||.||||      -|+++..+...+..
T Consensus        18 svaeHs~~vA~~a~~la~~~g~~~d~~~~~~~aLlHDi~E~~~gDi~~~~k~~~~~~~~   76 (178)
T 3kh1_A           18 NDAEHSWHIATXAFLLAEYADEAVQIGRVARXLLIHDIVEIDAGDTFIHDEAGNEDKEE   76 (178)
T ss_dssp             EHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTTHHHHCCCCTTCCC---CHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf             59999999999999877764898898999999999888987637877777534888899


No 25 
>>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} (A:313-451)
Probab=93.74  E-value=0.093  Score=32.21  Aligned_cols=112  Identities=12%  Similarity=-0.045  Sum_probs=60.5

Q ss_pred             CCHHHHHHHHHHHHHHHHH------CCCCHH---HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH
Q ss_conf             6208889999999999988------399988---9999998886289988654789999997312554577657788754
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARA------LRIDED---LVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTE  143 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~------l~~~~d---lvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~  143 (410)
                      .-.+||+.|+.++..|++.      ++++++   .+..|||.||||.---                .-..+.+++.++..
T Consensus        16 ~~~~H~~~v~~la~~l~~~l~~~~~~~l~~~~~~~l~~AallhdiG~~~~----------------~~~l~~~~~~~i~~   79 (139)
T 1u6z_A           16 IDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLNIN----------------HSGLHRHSAYILQN   79 (139)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHTTTTTTTC----------------STTHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCC----------------HHHHHHHHHHHHHC
T ss_conf             58888888899999999988653256799679999999999856160038----------------66799989999974


Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             32114670100024788877634757788644455210014577667640223133667321798656554432
Q gi|254780286|r  144 LECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYD  217 (410)
Q Consensus       144 LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~  217 (410)
                          .+..+=-.+-...+..++.|--...+.. +.|. ..          ++.. ..-...++|+.+||.....
T Consensus        80 ----h~~~g~~~~~~~~ia~ii~~hhe~~dg~-g~p~-~~----------~l~~-~~i~~~a~il~iad~~d~l  136 (139)
T 1u6z_A           80 ----SDLPGFNQEQQLMMATLVRYHRKAIKLD-DLPR-FT----------LFKK-KQFLPLIQLLRLGVLLNNQ  136 (139)
T ss_dssp             ----SCCTTCCHHHHHHHHHHHHTSSSCCCCT-TCCC-CS----------SCCH-HHHHHHHHHHHHHHHTTTT
T ss_pred             ----CCCCCCCHHHHHHHHHHHHHHCCCCCCH-HHHH-HC----------CCCH-HHHHHHHHHHHHHHHHHCC
T ss_conf             ----9889989999999999999847899804-4444-25----------0039-9999999999999997373


No 26 
>>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation, alternative splicing, hydrolase, membrane, polymorphism; 3.02A {Homo sapiens} (A:348-599)
Probab=93.06  E-value=0.086  Score=32.48  Aligned_cols=83  Identities=18%  Similarity=0.280  Sum_probs=49.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             98706620888999999999998839998-----89--999998886289988654789999997312554577657788
Q gi|254780286|r   68 RDHYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRI  140 (410)
Q Consensus        68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Ri  140 (410)
                      +--+|| -.|+..|.|..-.+-...++..     ++  .=.|||+||+|||.+--              .|--|.|+-  
T Consensus        92 ~npYHN-~~HA~dv~q~~~~~l~~~~~~~~l~~~e~~alliAal~HD~~HpG~~N--------------~fl~~~~~~--  154 (252)
T 3ibj_A           92 DPPYHN-WMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNN--------------SFQVASKSV--  154 (252)
T ss_dssp             CCSSSB-HHHHHHHHHHHHHHHHHHTGGGTSCHHHHHHHHHHHHHTTTTCCCCCC--------------SCSSSSSCC--
T ss_pred             CCCCCC-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCC--------------HHHHHCCCH--
T ss_conf             998837-899999999999999716874326879999999999726779999897--------------788744677--


Q ss_pred             HHHHHHCCCC-C-CCCCHHHHHHHHHHCCCCC
Q ss_conf             7543211467-0-1000247888776347577
Q gi|254780286|r  141 VTELECSYAD-F-DGINLTWETLEGLIGHNGP  170 (410)
Q Consensus       141 lt~LE~~~~~-~-~GLNLT~atL~~iiKyp~~  170 (410)
                         |...|.+ . -==|-..++.-.++..|+.
T Consensus       155 ---La~lY~nd~svlE~~H~~~~~~ll~~~~~  183 (252)
T 3ibj_A          155 ---LAALYSSEGSVMERHHFAQAIAILNTHGC  183 (252)
T ss_dssp             ---GGGTTTCSSSHHHHHHHHHHHHHHTSTTT
T ss_pred             ---HHHHHCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             ---88882899627889899999999856465


No 27 
>>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} (A:1-233)
Probab=92.92  E-value=0.12  Score=31.30  Aligned_cols=75  Identities=16%  Similarity=0.167  Sum_probs=47.8

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCH-----H--HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHC-CCC-----CCCCC
Q ss_conf             706620888999999999998839998-----8--9999998886289988654789999997312-554-----57765
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALRIDE-----D--LVEAIALAHDFGHPPFGHVGEDVLQELLSSY-GGF-----DHNIQ  136 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----d--lvea~~L~HDiGhpPFGH~GE~al~~~~~~~-~gF-----egNaQ  136 (410)
                      -+|| -.|+..|+|-.-.+-...++.+     +  ..=-|||+||+|||-+--.....-+.+..-. ++-     -|-+.
T Consensus        80 pyHN-~~Ha~dV~q~~~~~l~~~~~~~~l~~~e~~alliAal~HDv~HpG~tN~fli~~~~~la~~y~d~svlE~~H~~~  158 (233)
T 1taz_A           80 PYHN-QIHAADVTQTVHXFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISS  158 (233)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHHHHSGGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHH
T ss_pred             CCCC-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHCCCCCHHHHHHHHH
T ss_conf             7545-999999999999999704611228999999999999987158899657789855876888649987789999999


Q ss_pred             HHHHHHHHH
Q ss_conf             778875432
Q gi|254780286|r  137 SFRIVTELE  145 (410)
Q Consensus       137 ~~Rilt~LE  145 (410)
                      ++++|.+-|
T Consensus       159 ~~~lL~~~~  167 (233)
T 1taz_A          159 VFRLMQDDE  167 (233)
T ss_dssp             HHHHTTSGG
T ss_pred             HHHHHHCCC
T ss_conf             999982700


No 28 
>>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* (A:66-221)
Probab=92.90  E-value=0.13  Score=31.14  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=47.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCC--H-HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC---CC--CCCCHHH
Q ss_conf             70662088899999999999883999--8-89--99999888628998865478999999731255---45--7765778
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALRID--E-DL--VEAIALAHDFGHPPFGHVGEDVLQELLSSYGG---FD--HNIQSFR  139 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~~~--~-dl--vea~~L~HDiGhpPFGH~GE~al~~~~~~~~g---Fe--gNaQ~~R  139 (410)
                      =+|| -.|+..|.|..-.+-...+..  + ++  .=.|||.||+|||-+-=.....-+.+.....+   -|  |=+.+++
T Consensus        44 pyHN-~~Ha~dv~q~~~~ll~~~~~~~~~~e~~all~Aal~HDi~HpG~~N~fli~~~~~la~~y~dsvLE~~H~~~~~~  122 (156)
T 3hr1_A           44 PYHN-WKHAVTVAHCMYAILQNNNGLFTDLERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFSQTVS  122 (156)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHHTSTTTSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHHTCHHHHHCSSSHHHHHHHHHHHH
T ss_pred             CCCH-HHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCHHHHHCCCHHHHHHHHHHHHH
T ss_conf             8722-867757883312377538833475899999999996057999987524423688587761828888889999999


Q ss_pred             HHHH
Q ss_conf             8754
Q gi|254780286|r  140 IVTE  143 (410)
Q Consensus       140 ilt~  143 (410)
                      +|.+
T Consensus       123 lL~~  126 (156)
T 3hr1_A          123 ILQL  126 (156)
T ss_dssp             HHTS
T ss_pred             HHCC
T ss_conf             9717


No 29 
>>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphodiesterase 9A; crystallography, phophodiestrase, enzyme mechanism, alternative splicing, hydrolase; HET: PCG IBM; 2.10A {Homo sapiens} (A:1-232)
Probab=92.84  E-value=0.072  Score=33.03  Aligned_cols=60  Identities=20%  Similarity=0.361  Sum_probs=39.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             9998706620888999999999998839998-----89--9999988862899886547899999973
Q gi|254780286|r   66 RQRDHYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELLS  126 (410)
Q Consensus        66 ~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~~  126 (410)
                      ..+--+|| -.|+..|.|..-.+-...++..     ++  .=.|||+||+|||.+--..-..-+.+..
T Consensus        69 Y~~npyHN-~~HA~dv~q~~~~~l~~~~~~~~~~~~e~~alliAal~HDv~HpG~tN~fli~~~~~la  135 (232)
T 3dyn_A           69 YRNNPFHN-FRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELA  135 (232)
T ss_dssp             SCCCSSSS-HHHHHHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHH
T ss_pred             CCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHH
T ss_conf             79999717-99999999999999985374332898999999999998617899878999987387688


No 30 
>>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} (A:98-143,A:195-288)
Probab=92.61  E-value=0.17  Score=30.34  Aligned_cols=34  Identities=9%  Similarity=0.068  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHC
Q ss_conf             0888999999999998839-998899999988862
Q gi|254780286|r   75 LMHTIEVSQIARSLARALR-IDEDLVEAIALAHDF  108 (410)
Q Consensus        75 LtHslEVa~i~rsi~~~l~-~~~dlvea~~L~HDi  108 (410)
                      -.||+.||-++|-||+.++ .+++-+=+++|.||-
T Consensus        13 WeHSL~VAiIAR~IAkklg~~DpEEAFTAGLLHD~   47 (140)
T 3ljx_A           13 WQKSLARAVALQSITAQASTVAPKEAFTLGLLADP   47 (140)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC
T ss_conf             99999999999999998399888899888888447


No 31 
>>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A (A:1-238)
Probab=92.53  E-value=0.11  Score=31.55  Aligned_cols=52  Identities=19%  Similarity=0.291  Sum_probs=36.3

Q ss_pred             ECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCH-----H--HHHHHHHHHHCCCCCCCCC
Q ss_conf             169998706620888999999999998839998-----8--9999998886289988654
Q gi|254780286|r   64 FHRQRDHYRTRLMHTIEVSQIARSLARALRIDE-----D--LVEAIALAHDFGHPPFGHV  116 (410)
Q Consensus        64 ~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~-----d--lvea~~L~HDiGhpPFGH~  116 (410)
                      ....+--+|| -.|+..|.|..-.+-...++.+     +  -.=.|||+||+|||.+-=.
T Consensus        74 ~~Y~~npYHN-~~Ha~dv~q~~~~~l~~~~~~~~l~~~e~~alliAal~HD~~HpG~~N~  132 (238)
T 3itu_A           74 KGYRDPPYHN-WMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTNNS  132 (238)
T ss_dssp             HTCCCCSSSS-HHHHHHHHHHHHHHHHHHCGGGTSCHHHHHHHHHHHHHTTTTCCSCCHH
T ss_pred             HCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHH
T ss_conf             6279998736-9999999999999996368543378899999999999714689987689


No 32 
>>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} (A:29-184)
Probab=92.07  E-value=0.23  Score=29.26  Aligned_cols=37  Identities=35%  Similarity=0.433  Sum_probs=31.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHCC
Q ss_conf             62088899999999999883-----99988999999888628
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARAL-----RIDEDLVEAIALAHDFG  109 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~l-----~~~~dlvea~~L~HDiG  109 (410)
                      |=-.||..||.+|-.|+..+     ++|.+-|-+.||.||+|
T Consensus         9 svAeHs~~va~~a~~l~~~~~~~g~~vd~~~~~~~aL~HDl~   50 (156)
T 1xx7_A            9 SVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLG   50 (156)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             499999999999999998987635556899999999986389


No 33 
>>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 2o8h_A* 2ovv_A* 2ovy_A* (A:1-190)
Probab=91.71  E-value=0.13  Score=31.15  Aligned_cols=78  Identities=17%  Similarity=0.192  Sum_probs=44.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHCCCC--H-HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC-----CCCCC
Q ss_conf             999870662088899999999999883999--8-89--99999888628998865478999999731255-----45776
Q gi|254780286|r   66 RQRDHYRTRLMHTIEVSQIARSLARALRID--E-DL--VEAIALAHDFGHPPFGHVGEDVLQELLSSYGG-----FDHNI  135 (410)
Q Consensus        66 ~~~d~~rtRLtHslEVa~i~rsi~~~l~~~--~-dl--vea~~L~HDiGhpPFGH~GE~al~~~~~~~~g-----FegNa  135 (410)
                      ..+--+|| -.|+..|.|..-.+-..++..  + ++  .=.|||+||+|||=+-=.....-+.+.....|     =-|-+
T Consensus        74 Y~~~pyHN-~~HA~dv~q~~~~~l~~~~~~~~~~e~~alliAal~HD~~HpG~~N~fli~~~~~la~~y~~svLE~~H~~  152 (190)
T 2our_A           74 YRRVPYHN-WKHAVTVAHCMYAILQNNHTLFTDLERKGLLIACLCHDLDHRGFSNSYLQKFDHPLAALYSTSTMEQHHFS  152 (190)
T ss_dssp             SCSCSSSS-HHHHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHTTTTCCSCCHHHHHHTTCHHHHHSCSSHHHHHHHH
T ss_pred             CCCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHCCCCHHHHHHHH
T ss_conf             79999807-89999999999999817864589899999999999834489998748998718818988298578878999


Q ss_pred             CHHHHHHHH
Q ss_conf             577887543
Q gi|254780286|r  136 QSFRIVTEL  144 (410)
Q Consensus       136 Q~~Rilt~L  144 (410)
                      .++++|.+-
T Consensus       153 ~~~~lL~~~  161 (190)
T 2our_A          153 QTVSILQLE  161 (190)
T ss_dssp             HHHHHHTST
T ss_pred             HHHHHHHCC
T ss_conf             999998233


No 34 
>>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* (A:1-324)
Probab=91.65  E-value=0.1  Score=31.85  Aligned_cols=41  Identities=22%  Similarity=0.391  Sum_probs=17.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCC
Q ss_conf             06620888999999999998839998-----89--99999888628998
Q gi|254780286|r   71 YRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPP  112 (410)
Q Consensus        71 ~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpP  112 (410)
                      +|| -+|+..|+|..-.+-...++..     ++  .=.|||+||+|||-
T Consensus       161 yHN-~~HA~dv~q~~~~~l~~~~l~~~l~~~e~~alliAal~HDv~HpG  208 (324)
T 3g4g_A          161 YHN-NIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPG  208 (324)
T ss_dssp             SSS-HHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCS
T ss_pred             CCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf             765-999999999999999654711118888999999999981168999


No 35 
>>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} (A:1-257)
Probab=91.58  E-value=0.15  Score=30.72  Aligned_cols=56  Identities=21%  Similarity=0.241  Sum_probs=36.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             8706620888999999999998839998-----89--999998886289988654789999997
Q gi|254780286|r   69 DHYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELL  125 (410)
Q Consensus        69 d~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~  125 (410)
                      --+|| -.|+..|+|..-.+-+..++.+     ++  .=.|||+||+|||-+-=...-.-+.+.
T Consensus        98 npyHN-~~HA~dv~q~~~~~l~~~~~~~~l~~~e~~all~Aal~HDi~HpG~~N~fli~~~~~l  160 (257)
T 1tbf_A           98 VAYHN-WRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHPGVSNQFLINTNSEL  160 (257)
T ss_dssp             SSSSS-HHHHHHHHHHHHHHHHTTCCGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHH
T ss_pred             CCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCHH
T ss_conf             98726-9999999999999997578665699999999999988505699998788999739878


No 36 
>>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} (A:1-258)
Probab=91.57  E-value=0.12  Score=31.34  Aligned_cols=55  Identities=18%  Similarity=0.209  Sum_probs=36.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             706620888999999999998839998-----89--999998886289988654789999997
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELL  125 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~  125 (410)
                      -+|| -.|+..|.|..-.+-...++..     ++  .=-|||+||+|||..-=.-...-+.+.
T Consensus        94 pyHN-~~Ha~dv~q~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~HpG~tN~fl~~~~~~l  155 (258)
T 1y2k_A           94 AYHN-NIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSEL  155 (258)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHH
T ss_pred             CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCHH
T ss_conf             9866-9999999999999996668654598899999999999860289998857888548878


No 37 
>>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} (A:1-245)
Probab=90.56  E-value=0.18  Score=30.19  Aligned_cols=45  Identities=24%  Similarity=0.412  Sum_probs=30.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCC
Q ss_conf             706620888999999999998839998-----89--99999888628998865
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGH  115 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH  115 (410)
                      =+|| -.|+..|.|..-.+-...++.+     ++  .=.|||+||+|||..-=
T Consensus        81 pyHN-~~HA~dV~q~~~~~l~~~~~~~~l~~~e~~alliAal~HDi~HpG~~N  132 (245)
T 1f0j_A           81 AYHN-SLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDHPGVSN  132 (245)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCSSCH
T ss_pred             CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             8643-999999999999999554600128989999999999980479999886


No 38 
>>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.60A {Pyrococcus horikoshii OT3} (A:23-153)
Probab=88.78  E-value=0.68  Score=25.82  Aligned_cols=37  Identities=30%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             CCHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHCC
Q ss_conf             6208889999999999988-----399988999999888628
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARA-----LRIDEDLVEAIALAHDFG  109 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~-----l~~~~dlvea~~L~HDiG  109 (410)
                      |=-.||.-||-+|-.||..     -++|.+-|=+.||.||+|
T Consensus        10 svAeHs~~~A~ia~~la~~~~~~~~~vd~~k~i~~aL~HDl~   51 (131)
T 2cqz_A           10 SIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLA   51 (131)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             599999999999999998987725565899999999985699


No 39 
>>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.76A {Archaeoglobus fulgidus dsm 4304} (A:)
Probab=88.52  E-value=0.41  Score=27.44  Aligned_cols=39  Identities=23%  Similarity=0.094  Sum_probs=32.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHCC
Q ss_conf             066208889999999999988399---988999999888628
Q gi|254780286|r   71 YRTRLMHTIEVSQIARSLARALRI---DEDLVEAIALAHDFG  109 (410)
Q Consensus        71 ~rtRLtHslEVa~i~rsi~~~l~~---~~dlvea~~L~HDiG  109 (410)
                      --|=..||..||.+|-.|+..++.   |.+-+=.+||.||++
T Consensus        36 ~EsVAeHs~~va~la~~l~~~~~~~~~d~~~~i~~aL~HDl~   77 (173)
T 1ynb_A           36 PESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLH   77 (173)
T ss_dssp             CCBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             987899999999999999867088510099999999999999


No 40 
>>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* (A:1-237)
Probab=87.57  E-value=0.11  Score=31.70  Aligned_cols=43  Identities=23%  Similarity=0.441  Sum_probs=25.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCC----CCH-HH--HHHHHHHHHCCCCCC
Q ss_conf             706620888999999999998839----998-89--999998886289988
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALR----IDE-DL--VEAIALAHDFGHPPF  113 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~----~~~-dl--vea~~L~HDiGhpPF  113 (410)
                      -+|| -.|+..|.|..-.+-...+    +++ ++  .=.|||+||+|||=.
T Consensus        81 pyHN-~~HA~dv~q~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~HpG~  130 (237)
T 1zkl_A           81 PYHN-AVHAADVTQAMHCYLKEPKLANSVTPWDILLSLIAAATHDLDHPGV  130 (237)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHTSHHHHTTCCHHHHHHHHHHHHHTTTTCCSS
T ss_pred             CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCC
T ss_conf             8866-9999999999999992656000199999999999999802689986


No 41 
>>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A* (A:1-188)
Probab=87.03  E-value=0.18  Score=30.12  Aligned_cols=57  Identities=21%  Similarity=0.173  Sum_probs=35.6

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCC----CCH-HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             8706620888999999999998839----998-89--9999988862899886547899999973
Q gi|254780286|r   69 DHYRTRLMHTIEVSQIARSLARALR----IDE-DL--VEAIALAHDFGHPPFGHVGEDVLQELLS  126 (410)
Q Consensus        69 d~~rtRLtHslEVa~i~rsi~~~l~----~~~-dl--vea~~L~HDiGhpPFGH~GE~al~~~~~  126 (410)
                      --+|| -.|+..|.|..-.+-+..+    +++ ++  .=.|||+||+|||=+--......+.++.
T Consensus        72 ~pyHN-~~HA~dV~q~~~~ll~~~~~~~~~~~~e~~alliAal~HD~~HpG~~N~fl~~~~~~la  135 (188)
T 3ecm_A           72 NPYHN-STHSADVLHATAYFLSKERIKETLDPIDEVAALIAATIHDVDHPGRTNSFLCNAGSELA  135 (188)
T ss_dssp             SSSSS-HHHHHHHHHHHHHHHTSHHHHTTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHH
T ss_pred             CCCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHH
T ss_conf             98765-99999999999999973560013998999999999998337999998789988289188


No 42 
>>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} (A:122-258)
Probab=83.90  E-value=0.36  Score=27.84  Aligned_cols=14  Identities=36%  Similarity=0.432  Sum_probs=11.0

Q ss_pred             HHHHHHHHCCCCCC
Q ss_conf             99998886289988
Q gi|254780286|r  100 EAIALAHDFGHPPF  113 (410)
Q Consensus       100 ea~~L~HDiGhpPF  113 (410)
                      =-|||+||+|||=+
T Consensus        13 liAal~HDv~HpG~   26 (137)
T 2r8q_A           13 LVTALVHDLDHMGV   26 (137)
T ss_dssp             HHHHHHTTTTCCSC
T ss_pred             HHHHHHHCCCCCCC
T ss_conf             99999806799988


No 43 
>>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} (A:1-771)
Probab=83.36  E-value=1.2  Score=23.91  Aligned_cols=16  Identities=13%  Similarity=0.086  Sum_probs=6.0

Q ss_pred             HEECCCCHHHHHHHHH
Q ss_conf             0006733699999999
Q gi|254780286|r  378 DYLAGMTDSYAIREHH  393 (410)
Q Consensus       378 DYIAGMTD~YAi~ly~  393 (410)
                      ++-+++++..-..+.+
T Consensus       702 ~~~~~~~~~~~~~~~~  717 (771)
T 3bjc_A          702 QILSGLSIEEYKTTLK  717 (771)
T ss_dssp             CTTTTSCHHHHHHHHH
T ss_pred             CHHHCCCHHHHHHHHH
T ss_conf             2110699999999999


No 44 
>>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} (A:1-288)
Probab=81.49  E-value=0.51  Score=26.74  Aligned_cols=13  Identities=23%  Similarity=0.348  Sum_probs=5.8

Q ss_pred             HHHHHHHHHHHHH
Q ss_conf             8889999999999
Q gi|254780286|r   76 MHTIEVSQIARSL   88 (410)
Q Consensus        76 tHslEVa~i~rsi   88 (410)
                      .|..-|+|..-.+
T Consensus        87 ~HA~~V~~~~~~l   99 (288)
T 1so2_A           87 IHATDVLHAVWYL   99 (288)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999999


No 45 
>>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Agrobacterium tumefaciens str} (A:27-207)
Probab=80.74  E-value=1.1  Score=24.41  Aligned_cols=34  Identities=24%  Similarity=0.100  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             6208889999999999988399988999999888628
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG  109 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiG  109 (410)
                      |=..||..||.++.-++   ++|++-+-.+||.||+|
T Consensus        29 sVAeHS~~va~ia~~l~---~~d~~~~~~~aL~HD~~   62 (181)
T 2gz4_A           29 TVAQHCLIVETIFCRMC---PGATPDEMQMALLHDAP   62 (181)
T ss_dssp             BHHHHHHHHHHHHHHHC---TTCCHHHHHHHHTTTTT
T ss_pred             CHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHCCCH
T ss_conf             19999999999999867---89998999999864779


No 46 
>>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str} (A:313-374)
Probab=77.57  E-value=0.96  Score=24.71  Aligned_cols=13  Identities=23%  Similarity=0.248  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHHCC
Q ss_conf             8999999888628
Q gi|254780286|r   97 DLVEAIALAHDFG  109 (410)
Q Consensus        97 dlvea~~L~HDiG  109 (410)
                      -|+.||||.||||
T Consensus        48 RLr~AAClLsDig   60 (62)
T 3hi0_A           48 RYRQAACLLADIS   60 (62)
T ss_dssp             HHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHHHH
T ss_conf             9999999999850


No 47 
>>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, manganese, GDP, PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} (A:1-156)
Probab=51.28  E-value=13  Score=16.39  Aligned_cols=11  Identities=36%  Similarity=0.579  Sum_probs=4.4

Q ss_pred             HHHHHHHHHHH
Q ss_conf             88899999999
Q gi|254780286|r   76 MHTIEVSQIAR   86 (410)
Q Consensus        76 tHslEVa~i~r   86 (410)
                      .|.++||+|-.
T Consensus        52 ~H~l~va~il~   62 (156)
T 1vj7_A           52 VHPIQVAGILA   62 (156)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998


No 48 
>>1ccw_B Protein (glutamate mutase); coenzyme B12, radical reaction, TIM- barrel, rossman-fold; HET: TAR CNC; 1.60A {Clostridium cochlearium} (B:410-483)
Probab=49.45  E-value=6.1  Score=18.78  Aligned_cols=38  Identities=26%  Similarity=0.375  Sum_probs=29.4

Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf             88628998865478999999731255457765778875
Q gi|254780286|r  105 AHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVT  142 (410)
Q Consensus       105 ~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt  142 (410)
                      -+|.||=||-+.=.+.=++..++-+.+||-.++|.++-
T Consensus        21 ~l~~GnlP~~~dik~fh~~kl~eRa~~EgR~~sFqMvi   58 (74)
T 1ccw_B           21 YLEFGNVPFTEEIKNYNRERLQERAKFEGRDVSFQMVI   58 (74)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred             ECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             03467888883789999999999987506517788879


No 49 
>>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, structural genomics; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:)
Probab=47.14  E-value=5.6  Score=19.07  Aligned_cols=11  Identities=9%  Similarity=0.461  Sum_probs=4.5

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99999999999
Q gi|254780286|r  338 ANVIRNLFSAY  348 (410)
Q Consensus       338 ~~iI~~Lf~~f  348 (410)
                      ..+-+.|++.+
T Consensus       319 ~~lR~~Ll~~~  329 (445)
T 2okc_A          319 ETIRKRLLQDF  329 (445)
T ss_dssp             HHHHHHHHHHE
T ss_pred             HHHHHHHHHHC
T ss_conf             88999999838


No 50 
>>3l4q_A NS1, NS1A, non-structural protein 1; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Influenza a virus} (A:)
Probab=45.22  E-value=4.6  Score=19.68  Aligned_cols=32  Identities=31%  Similarity=0.508  Sum_probs=21.8

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             65478999999731255457765778875432
Q gi|254780286|r  114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELE  145 (410)
Q Consensus       114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE  145 (410)
                      ||.+|++-+..=--.||+|-|-++.|+-..|+
T Consensus       102 Ght~eDVknAigvLIgGleWndNtvrvse~lQ  133 (164)
T 3l4q_A          102 GHTAEDVKNAVGVLIGGLEWNDNTVRVSETLQ  133 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCEEEECHHHH
T ss_pred             CCCHHHHHHHHHHEECCEEECCCEEEHHHHHH
T ss_conf             98617887668744411156596675567788


No 51 
>>3d6r_B NS1, NS1A, non-structural protein 1; effector domain, alternative splicing, cytoplasm, HOST-virus interaction; 2.00A {Influenza a virus} (B:)
Probab=43.44  E-value=5.1  Score=19.35  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=26.1

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             654789999997312554577657788754321
Q gi|254780286|r  114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC  146 (410)
Q Consensus       114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~  146 (410)
                      ||.+|++-+..=--.||+|-|-++.|+-..|+.
T Consensus        96 Ght~eDVknAigvLIgGleWndntvrvse~lQr  128 (158)
T 3d6r_B           96 GHSTEDVKNAIGILIGGLEWNDNSIRASENIQR  128 (158)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCEEEECHHHHH
T ss_pred             CCCHHHHHHHHHHEECCEEECCCEEEHHHHHHH
T ss_conf             986177876687544110465965656678888


No 52 
>>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} (A:197-542)
Probab=40.89  E-value=7.8  Score=17.98  Aligned_cols=10  Identities=20%  Similarity=0.580  Sum_probs=8.1

Q ss_pred             CCCCCCCCCH
Q ss_conf             2899886547
Q gi|254780286|r  108 FGHPPFGHVG  117 (410)
Q Consensus       108 iGhpPFGH~G  117 (410)
                      |||||||...
T Consensus       106 i~NPPy~~~~  115 (346)
T 3lkd_A          106 LXNPPYSAKW  115 (346)
T ss_dssp             EECCCTTCCC
T ss_pred             EECCCCCCCC
T ss_conf             8348877776


No 53 
>>3ke8_A 4-hydroxy-3-methylbut-2-ENYL diphosphate reductase; induced FIT mechanism, FS4-iron-sulfure-cluster, 3Fe-4S, iron, iron-sulfur; HET: EIP; 1.70A {Escherichia coli} PDB: 3ke9_A* 3kef_A* 3kel_A 3kem_A* 3f7t_A (A:1-20,A:202-326)
Probab=39.13  E-value=10  Score=17.07  Aligned_cols=18  Identities=39%  Similarity=0.617  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             565544321207989987
Q gi|254780286|r  210 IADDIAYDAHDIDDGVRA  227 (410)
Q Consensus       210 aADDIAY~~hDlEDai~~  227 (410)
                      -.|+|||.+.+-++|++.
T Consensus        21 ~~dTIC~AT~~RQ~Av~~   38 (145)
T 3ke8_A           21 RKDDICYATTNRQEAVRA   38 (145)
T ss_dssp             SSCSCCHHHHHHHHHHHH
T ss_pred             CCCCEEHHHHHHHHHHHH
T ss_conf             747730626879999999


No 54 
>>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} (A:309-403,A:464-526)
Probab=36.95  E-value=7.3  Score=18.21  Aligned_cols=16  Identities=44%  Similarity=1.101  Sum_probs=14.8

Q ss_pred             HHHCCCCCCCCCHHHH
Q ss_conf             8862899886547899
Q gi|254780286|r  105 AHDFGHPPFGHVGEDV  120 (410)
Q Consensus       105 ~HDiGhpPFGH~GE~a  120 (410)
                      +||=+||-+|..|++|
T Consensus        54 GHDSaHPDY~~i~~RA   69 (158)
T 2zxq_A           54 GHDSGHPDYGDIGQRL   69 (158)
T ss_dssp             STTSSTTCTTCBCGGG
T ss_pred             CCCCCCCCHHHHCCCC
T ss_conf             8666897523303346


No 55 
>>2rhk_A NS1, NS1A, non-structural protein 1; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Influenza a virus} PDB: 2kkz_A 3ee9_A 3ee8_A 2gx9_A (A:)
Probab=36.85  E-value=6.1  Score=18.78  Aligned_cols=32  Identities=31%  Similarity=0.469  Sum_probs=23.6

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             65478999999731255457765778875432
Q gi|254780286|r  114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELE  145 (410)
Q Consensus       114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE  145 (410)
                      ||.+|++-+..=--.||+|-|-++.|+-..|+
T Consensus        85 ght~edvknaigvLIgGleWndntvrvse~lQ  116 (140)
T 2rhk_A           85 GHTIEDVKNAIGVLIGGLEWNDNTVRVSKTLQ  116 (140)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCEEEECHHHH
T ss_pred             CCCHHHHHHHHHHEECCEEECCCEEEHHHHHH
T ss_conf             98607888768754410046596575567788


No 56 
>>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} (A:1-108)
Probab=33.20  E-value=26  Score=14.11  Aligned_cols=23  Identities=22%  Similarity=0.216  Sum_probs=20.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             28998865478999999731255
Q gi|254780286|r  108 FGHPPFGHVGEDVLQELLSSYGG  130 (410)
Q Consensus       108 iGhpPFGH~GE~al~~~~~~~~g  130 (410)
                      |||-|..+.-|+-|.+.|..+|.
T Consensus         8 V~nl~~~~~te~~l~~~F~~~G~   30 (108)
T 1qm9_A            8 VSNLNPERVTPQSLFILFGVYGD   30 (108)
T ss_dssp             EECCCSSSCCHHHHHHHHHTTCC
T ss_pred             EECCCCCCCCHHHHHHHHHCCCC
T ss_conf             97898577999999998544698


No 57 
>>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation, PP2A regulatory subunit; 2.60A {Homo sapiens} (A:293-392)
Probab=30.45  E-value=29  Score=13.79  Aligned_cols=18  Identities=22%  Similarity=0.091  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHCCCCCCCCC
Q ss_conf             2478887763475778864
Q gi|254780286|r  156 LTWETLEGLIGHNGPILPQ  174 (410)
Q Consensus       156 LT~atL~~iiKyp~~~~~~  174 (410)
                      ||..++.|++|| ||.+..
T Consensus         1 L~~~vi~~llk~-WP~tns   18 (100)
T 2jak_A            1 LTEPVVMALLKY-WPKTHS   18 (100)
T ss_dssp             GHHHHHHHHHHS-SCSSCC
T ss_pred             HHHHHHHHHHHH-CCCCCC
T ss_conf             289999999983-899882


No 58 
>>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A (A:69-133)
Probab=30.25  E-value=28  Score=13.88  Aligned_cols=22  Identities=14%  Similarity=0.057  Sum_probs=17.5

Q ss_pred             ECCCCHHHHHHHHHHHHCCCCC
Q ss_conf             0673369999999998188988
Q gi|254780286|r  380 LAGMTDSYAIREHHILFGYIPD  401 (410)
Q Consensus       380 IAGMTD~YAi~ly~kL~G~~p~  401 (410)
                      .+||+=+|..+++++.+|.+|-
T Consensus        34 ~~~~S~~~l~r~Fk~~~G~sp~   55 (65)
T 1u8b_A           34 QVAXSPFHLHRLFKATTGXTPK   55 (65)
T ss_dssp             HHTSCHHHHHHHHHHHTSSCHH
T ss_pred             HCCCCHHHHHHHHHHHHCCCHH
T ss_conf             7199989999999999892999


No 59 
>>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} (A:172-385)
Probab=29.53  E-value=22  Score=14.62  Aligned_cols=11  Identities=45%  Similarity=0.887  Sum_probs=5.2

Q ss_pred             CCCCCCCCHHH
Q ss_conf             89988654789
Q gi|254780286|r  109 GHPPFGHVGED  119 (410)
Q Consensus       109 GhpPFGH~GE~  119 (410)
                      .||||+|..+.
T Consensus       136 ~npP~~~~~~~  146 (214)
T 3ldu_A          136 TNPPYGERLED  146 (214)
T ss_dssp             ECCCCCCSHHH
T ss_pred             ECCCCCCCCCC
T ss_conf             48982000376


No 60 
>>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} (A:)
Probab=28.71  E-value=30  Score=13.72  Aligned_cols=23  Identities=17%  Similarity=0.094  Sum_probs=19.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             28998865478999999731255
Q gi|254780286|r  108 FGHPPFGHVGEDVLQELLSSYGG  130 (410)
Q Consensus       108 iGhpPFGH~GE~al~~~~~~~~g  130 (410)
                      |||-|+...-|+-|.+.|..+|.
T Consensus        20 V~nl~~~~~~e~~l~~~F~~~G~   42 (102)
T 1x4d_A           20 IMDFQRGKNLRYQLLQLVEPFGV   42 (102)
T ss_dssp             EESCCCSSSHHHHHHTTTGGGSC
T ss_pred             EECCCCCCCCHHHHHHHHHHHCC
T ss_conf             97899877789999999983287


No 61 
>>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} (A:)
Probab=27.81  E-value=12  Score=16.54  Aligned_cols=14  Identities=0%  Similarity=-0.308  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHH
Q ss_conf             17986565544321
Q gi|254780286|r  205 GQVAAIADDIAYDA  218 (410)
Q Consensus       205 a~iveaADDIAY~~  218 (410)
                      +.+.|||.-.+...
T Consensus        64 tfLiEA~~~~~~~~   77 (250)
T 1o9g_A           64 YLLTVLGLLHRRSL   77 (250)
T ss_dssp             HHHHHHHHHTGGGE
T ss_pred             HHHHHHHHHCHHHH
T ss_conf             89999988430577


No 62 
>>3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus interaction, interferon antiviral system evasion, nucleus, RNA-binding; 2.70A {Influenza virus} PDB: 3f5t_A (A:)
Probab=27.54  E-value=11  Score=16.94  Aligned_cols=12  Identities=25%  Similarity=0.382  Sum_probs=9.8

Q ss_pred             CCCCHHHHHHHH
Q ss_conf             100024788877
Q gi|254780286|r  152 DGINLTWETLEG  163 (410)
Q Consensus       152 ~GLNLT~atL~~  163 (410)
                      -||++--||+.|
T Consensus        50 lGldie~aT~~G   61 (215)
T 3eu6_A           50 LGLDIETATRAG   61 (215)
T ss_dssp             HTCCHHHHHHHH
T ss_pred             CCCCCHHHHHHH
T ss_conf             442403876767


No 63 
>>3djl_A Protein AIDB; alpha helix, beta-barrel, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.70A {Escherichia coli} (A:52-105)
Probab=24.08  E-value=24  Score=14.37  Aligned_cols=24  Identities=21%  Similarity=0.173  Sum_probs=20.2

Q ss_pred             CCCCHHHCCCCEEECCHHHHHHCC
Q ss_conf             999843400001102734623275
Q gi|254780286|r   35 LTRSEFQRDRDRMIHTTAFRRLKD   58 (410)
Q Consensus        35 ~~R~~f~rD~dRIi~S~afRRL~~   58 (410)
                      -..+.|-+..|+|.|++++..|+.
T Consensus        19 ~~~D~~G~RiD~v~~hpawh~L~~   42 (54)
T 3djl_A           19 LRYDAQGRRLDDVRFHPAWHLLMQ   42 (54)
T ss_dssp             EEECTTSCEEEEEECCHHHHHHHH
T ss_pred             ECCCCCCCCCCEEEECHHHHHHHH
T ss_conf             054999888853765889999999


No 64 
>>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structural genomics; 1.50A {Listeria monocytogenes str} (A:178-393)
Probab=20.08  E-value=43  Score=12.49  Aligned_cols=10  Identities=40%  Similarity=0.873  Sum_probs=3.9

Q ss_pred             CCCCCCCCHH
Q ss_conf             8998865478
Q gi|254780286|r  109 GHPPFGHVGE  118 (410)
Q Consensus       109 GhpPFGH~GE  118 (410)
                      -||||+|..+
T Consensus       136 ~npP~~~~~~  145 (216)
T 3k0b_A          136 ANPPYGERLE  145 (216)
T ss_dssp             ECCCCCCSHH
T ss_pred             ECCCCCCCCC
T ss_conf             5797100047


Done!