Query gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 410 No_of_seqs 191 out of 1457 Neff 8.0 Searched_HMMs 13730 Date Tue May 24 18:09:06 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780286.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2heka1 a.211.1.1 (A:1-369) Hy 100.0 1.3E-35 9.6E-40 279.5 0.6 111 39-149 14-127 (369) 2 d2o6ia1 a.211.1.1 (A:1-453) Hy 99.6 2E-15 1.4E-19 130.4 11.5 90 45-146 32-142 (453) 3 d2pq7a1 a.211.1.1 (A:1-217) Pr 97.8 4.8E-05 3.5E-09 53.6 8.2 103 72-214 31-133 (217) 4 d3dtoa1 a.211.1.1 (A:2-213) Un 97.6 9.3E-05 6.7E-09 51.5 7.3 98 74-216 25-125 (212) 5 d2qgsa1 a.211.1.1 (A:1-216) Un 97.4 0.00023 1.6E-08 48.7 6.8 55 73-127 25-82 (216) 6 d3b57a1 a.211.1.1 (A:1-201) Un 97.3 0.0003 2.2E-08 47.7 6.6 46 74-119 26-71 (201) 7 d3djba1 a.211.1.1 (A:2-214) Un 97.3 0.00021 1.5E-08 48.9 5.5 45 73-117 24-68 (213) 8 d2pjqa1 a.211.1.1 (A:1-215) Un 97.3 0.00034 2.5E-08 47.3 6.6 42 73-114 25-66 (215) 9 d3dy8a1 a.211.1.2 (A:182-505) 93.5 0.041 3E-06 32.0 4.2 73 70-143 69-154 (324) 10 d1tbfa_ a.211.1.2 (A:) cGMP-sp 93.1 0.036 2.6E-06 32.3 3.5 44 70-114 78-128 (326) 11 d1y2ka1 a.211.1.2 (A:86-411) C 92.1 0.036 2.6E-06 32.4 2.2 49 70-121 73-128 (326) 12 d1xx7a_ a.211.1.1 (A:) Oxetano 91.1 0.15 1.1E-05 27.8 4.6 38 72-109 28-70 (172) 13 d1taza_ a.211.1.2 (A:) Catalyt 90.6 0.51 3.7E-05 23.9 10.0 149 70-229 76-241 (357) 14 d2paqa1 a.211.1.1 (A:2-187) 5' 88.5 0.28 2E-05 25.8 4.3 39 71-109 26-70 (186) 15 d1ynba1 a.211.1.1 (A:7-173) Hy 85.4 0.61 4.5E-05 23.3 4.6 37 73-109 32-71 (167) 16 d1so2a_ a.211.1.2 (A:) cGMP-in 80.5 0.24 1.7E-05 26.3 0.9 21 69-90 76-96 (415) 17 d1u6za1 a.211.1.5 (A:313-509) 79.4 1.5 0.00011 20.5 4.7 76 73-169 16-101 (197) 18 d1vqra_ a.211.1.3 (A:) Hypothe 75.4 0.58 4.2E-05 23.5 1.7 42 72-113 112-154 (286) 19 d1vj7a1 a.211.1.1 (A:5-196) St 64.9 2 0.00015 19.4 2.6 57 42-108 19-75 (192) 20 d1ufba_ a.24.16.3 (A:) Hypothe 54.7 2.6 0.00019 18.7 1.7 43 99-143 42-84 (127) 21 d2ar0a1 c.66.1.45 (A:6-529) M. 48.8 2 0.00015 19.4 0.4 10 130-139 211-220 (524) 22 d2okca1 c.66.1.45 (A:9-433) Ty 48.5 2.1 0.00015 19.3 0.4 10 338-347 310-319 (425) 23 d1d5ya1 a.4.1.8 (A:3-56) Rob t 41.8 6.5 0.00048 15.7 2.1 23 379-401 27-49 (54) 24 d2gx9a1 d.299.1.1 (A:79-205) N 36.8 3.1 0.00022 18.1 -0.2 32 114-145 90-121 (127) 25 d1o3ua_ a.24.16.3 (A:) Hypothe 36.7 9.4 0.00069 14.5 2.9 40 102-142 40-79 (126) 26 d1bl0a1 a.4.1.8 (A:9-62) MarA 35.5 9.8 0.00072 14.4 2.2 23 379-401 27-49 (54) 27 d2gz4a1 a.211.1.1 (A:6-205) Hy 31.9 11 0.00081 14.0 3.1 44 73-127 50-93 (200) 28 d1nexa1 a.157.1.1 (A:116-185) 30.7 7.7 0.00056 15.2 1.0 26 374-403 37-62 (70) 29 d1lghb_ f.3.1.1 (B:) Light-har 23.9 15 0.0011 13.0 1.9 16 380-395 3-18 (43) 30 d1jo5a_ f.3.1.1 (A:) Light-har 21.2 17 0.0012 12.6 1.3 16 380-395 8-23 (48) No 1 >d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} Probab=100.00 E-value=1.3e-35 Score=279.52 Aligned_cols=111 Identities=28% Similarity=0.405 Sum_probs=102.5 Q ss_pred HHHCCCCEEECCHHHHHHCCCCEEEECCCC--CCCCCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHCCCCCCCC Q ss_conf 434000011027346232757478716999--8706620888999999999998839998-8999999888628998865 Q gi|254780286|r 39 EFQRDRDRMIHTTAFRRLKDKTQVFFHRQR--DHYRTRLMHTIEVSQIARSLARALRIDE-DLVEAIALAHDFGHPPFGH 115 (410) Q Consensus 39 ~f~rD~dRIi~S~afRRL~~KTQVf~~~~~--d~~rtRLtHslEVa~i~rsi~~~l~~~~-dlvea~~L~HDiGhpPFGH 115 (410) ++..+..|||+|++||||++||||+|+... +.+||||||||||+|+||++|+.|+.+. ++|++|||+|||||||||| T Consensus 14 ~~~~~~~rii~s~~fqRL~~~~Ql~~~~~v~p~a~htR~~HSLgV~~lar~l~~~l~~~~~~~v~~A~LlHDiGh~PFsH 93 (369) T d2heka1 14 RVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPFSH 93 (369) T ss_dssp EEEHHHHHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSSSS T ss_pred ECCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHH T ss_conf 64889999829976703457734785523389995662119989999999999997433288999999986026502220 Q ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC Q ss_conf 4789999997312554577657788754321146 Q gi|254780286|r 116 VGEDVLQELLSSYGGFDHNIQSFRIVTELECSYA 149 (410) Q Consensus 116 ~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~ 149 (410) +||++++.|+...++|+++.++.++...++..+. T Consensus 94 ~gE~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 127 (369) T d2heka1 94 TTEVLLPRERSHEDFTERVIKETEIYEILKQDYS 127 (369) T ss_dssp CHHHHSTTSSSCCCHHHHHHHHSHHHHHHHTTSC T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHC T ss_conf 4666620345520468998740179999998521 No 2 >d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} Probab=99.63 E-value=2e-15 Score=130.41 Aligned_cols=90 Identities=26% Similarity=0.432 Sum_probs=76.1 Q ss_pred CEEECCHHHHHHCCCCE------EEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC------------CCH---HHHHHHH Q ss_conf 01102734623275747------87169998706620888999999999998839------------998---8999999 Q gi|254780286|r 45 DRMIHTTAFRRLKDKTQ------VFFHRQRDHYRTRLMHTIEVSQIARSLARALR------------IDE---DLVEAIA 103 (410) Q Consensus 45 dRIi~S~afRRL~~KTQ------Vf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~------------~~~---dlvea~~ 103 (410) -+||-|++|.||...+| |||- -.|||.+|||.|+.+++.+++.|. +++ .+|.+|| T Consensus 32 ~~lidt~~fQRLr~I~Qlg~~~~v~pg----A~HtRfeHSLGv~~la~~~~~~l~~~~~~~~~~~~~~~~~~~~~v~~Aa 107 (453) T d2o6ia1 32 LDLINSAEVQRLRRIKQLGTSSFTFHG----AEHSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAA 107 (453) T ss_dssp HHHHTSHHHHGGGGSBSSSGGGGTSTT----CCCBHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGGSBCGGGHHHHHHHH T ss_pred HHHCCCHHHHHHCCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHH T ss_conf 987199867312456637876615689----8137210999999999999999986164100234577778999999999 Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 8886289988654789999997312554577657788754321 Q gi|254780286|r 104 LAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC 146 (410) Q Consensus 104 L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~ 146 (410) |.|||||+||+|++|.+ .++.|+..|.+++...+. T Consensus 108 LlHDiGHgPfSH~~E~~--------~~~~he~~~~~i~~~~~~ 142 (453) T d2o6ia1 108 LLHDVGHGPYSHTFEHI--------FDTNHEAITVQIITSPET 142 (453) T ss_dssp HHTTTTCCTTHHHHHHH--------SCCCHHHHHHHHHHCTTS T ss_pred HHHCCCCCCCCCCCCCC--------CCCCCHHHHHHHHHHHHH T ss_conf 98613766110001001--------343405889999971013 No 3 >d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Probab=97.82 E-value=4.8e-05 Score=53.64 Aligned_cols=103 Identities=22% Similarity=0.181 Sum_probs=66.6 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCC Q ss_conf 66208889999999999988399988999999888628998865478999999731255457765778875432114670 Q gi|254780286|r 72 RTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADF 151 (410) Q Consensus 72 rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~ 151 (410) -+-+.|++-|.+.|+.|++..+.|+++|++|||.||||.|.... .+-+|-..|.+++..+-.. .+ T Consensus 31 sHd~~H~~RV~~~A~~Ia~~e~~D~~vv~~AALLHDIg~~~~~~-------------~~~~h~~~~a~~a~~~L~~-~~- 95 (217) T d2pq7a1 31 AHDISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRPHEAL-------------TGVDHAESGAEYASGLLPT-MG- 95 (217) T ss_dssp TTSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHHHHH-------------HCCCHHHHHHHHHHHHGGG-GT- T ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCHHCCC-------------CCCCHHHHHHHHHHHHHHH-CC- T ss_conf 76779999999999999988499999999999851420000057-------------7757799999999998886-69- Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 100024788877634757788644455210014577667640223133667321798656554 Q gi|254780286|r 152 DGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDI 214 (410) Q Consensus 152 ~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDI 214 (410) -.-...-+++.+|..|.++... ...++|++||--||-+ T Consensus 96 ~~~~~i~~I~~aI~~H~~~~~~-------------------------~~~t~E~~Iv~DADrL 133 (217) T d2pq7a1 96 FDISFVAEVSKAIRSHRYSGGL-------------------------TPTSLTGKILQDADRL 133 (217) T ss_dssp CCHHHHHHHHHHHHHCC------------------------------CCCSHHHHHHHHHHHG T ss_pred CCHHHHHHHHHHHHHCCCCCCC-------------------------CCCHHHHHHHHHHHHH T ss_conf 8779999999999973875789-------------------------9631177599999988 No 4 >d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Probab=97.63 E-value=9.3e-05 Score=51.52 Aligned_cols=98 Identities=18% Similarity=0.115 Sum_probs=63.5 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHH---HHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC Q ss_conf 2088899999999999883999889999998886289988654789---9999973125545776577887543211467 Q gi|254780286|r 74 RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGED---VLQELLSSYGGFDHNIQSFRIVTELECSYAD 150 (410) Q Consensus 74 RLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~---al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~ 150 (410) -+-|++.|...|..|++..+.|.++|.+|||.||||..+.++..+. ....++.+.| | + T Consensus 25 ~~~H~~rV~~~A~~Ia~~e~~D~~vv~~aAllHDig~~~~~~~~~~~~~~a~~~L~~~g-~-----------------~- 85 (212) T d3dtoa1 25 DWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAKQQLIDWMEAAG-V-----------------P- 85 (212) T ss_dssp CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC-------CHHHHHHHHHHHTTT-C-----------------C- T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCC-C-----------------C- T ss_conf 87999999999999998849999999999997310013456524568999999998887-8-----------------9- Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 010002478887763475778864445521001457766764022313366732179865655443 Q gi|254780286|r 151 FDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAY 216 (410) Q Consensus 151 ~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY 216 (410) -...-.+..+|.-|..... . .....++|++|+.-||-+.. T Consensus 86 ---~~~i~~V~~~I~~hs~~~~--~---------------------~~~~~t~e~~iv~DADrLDa 125 (212) T d3dtoa1 86 ---SQKIDHTMDIINTISFKGG--H---------------------GQSLATREAMVVQDADRLDA 125 (212) T ss_dssp ---HHHHHHHHHHHHCC---------------------------------CCHHHHHHHHHHHGGG T ss_pred ---HHHHHHHHHHHHHHHCCCC--C---------------------CCCCCCHHHHHHHHHHHHHH T ss_conf ---9999999999999771258--8---------------------99999989999993899987 No 5 >d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Probab=97.40 E-value=0.00023 Score=48.66 Aligned_cols=55 Identities=25% Similarity=0.271 Sum_probs=44.2 Q ss_pred CCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCCCCCC--HHHHHHHHHHH Q ss_conf 6208889999999999988399-9889999998886289988654--78999999731 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALRI-DEDLVEAIALAHDFGHPPFGHV--GEDVLQELLSS 127 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~~-~~dlvea~~L~HDiGhpPFGH~--GE~al~~~~~~ 127 (410) +-+.|++-|...|+.|+...+. +..+|++|||.||||..+..|. |.+....|+.+ T Consensus 25 Hd~~H~~RV~~~A~~Ia~~e~~~d~~vv~~AAlLHDigd~k~~~e~~~a~~a~~~L~~ 82 (216) T d2qgsa1 25 HDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSKLTDEILAYDQLKQFLST 82 (216) T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCCSSSCHHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH T ss_conf 6879999999999999987499728999999998630321234326789999999988 No 6 >d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Probab=97.31 E-value=0.0003 Score=47.72 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=41.3 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHH Q ss_conf 2088899999999999883999889999998886289988654789 Q gi|254780286|r 74 RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGED 119 (410) Q Consensus 74 RLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~ 119 (410) -+.|++-|.+.|+.|+...+.+..+|++|||.||||..|+.+.++. T Consensus 26 d~~H~~rV~~~A~~Ia~~e~~d~~~v~~AAlLHDi~~~k~~~~~~~ 71 (201) T d3b57a1 26 DWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIKLTTDEQE 71 (201) T ss_dssp CHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC-------CH T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHH T ss_conf 9999999999999999877764999999999864022246672777 No 7 >d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} Probab=97.28 E-value=0.00021 Score=48.90 Aligned_cols=45 Identities=22% Similarity=0.233 Sum_probs=40.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH Q ss_conf 620888999999999998839998899999988862899886547 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVG 117 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~G 117 (410) +-+.|++-|...|..|++..+.|..+|++|||.||||.++..+.. T Consensus 24 Hd~~Hi~RV~~~A~~Ia~~e~~D~~vv~~AAlLHDig~~k~~~~~ 68 (213) T d3djba1 24 HDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNESE 68 (213) T ss_dssp TTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--CCSSS T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH T ss_conf 886999999999999998759999999999999740431124522 No 8 >d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Probab=97.28 E-value=0.00034 Score=47.30 Aligned_cols=42 Identities=26% Similarity=0.202 Sum_probs=38.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 620888999999999998839998899999988862899886 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFG 114 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFG 114 (410) +-+-|++-|.+.|+.|++..+.|.++|.+|||.||||..+.- T Consensus 25 Hd~~H~~RV~~~A~~Ia~~e~~D~~vv~~AAlLHDigd~k~~ 66 (215) T d2pjqa1 25 HGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKLM 66 (215) T ss_dssp CSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC---- T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC T ss_conf 788999999999999998859999999999999886010035 No 9 >d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]} Probab=93.49 E-value=0.041 Score=31.98 Aligned_cols=73 Identities=23% Similarity=0.406 Sum_probs=45.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHHH-CCC-----CCCCCC Q ss_conf 706620888999999999998839998-----89--99999888628998865478999999731-255-----457765 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELLSS-YGG-----FDHNIQ 136 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~~~-~~g-----FegNaQ 136 (410) -+|| -+|+..|+|..-.+-...++.. ++ +=.|||+||+|||=.--......+....- |++ =-|-+. T Consensus 69 pYHN-~~HA~dV~q~~~~ll~~~~~~~~l~~~e~~alliAal~HD~~HpG~~N~fl~~~~~~la~~ynd~SvlE~~H~~~ 147 (324) T d3dy8a1 69 PFHN-FRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAV 147 (324) T ss_dssp SSSS-HHHHHHHHHHHHHHHHHTTGGGTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHTTTSSHHHHHHHHH T ss_pred CCCC-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHCCCHHHHHCCCCCHHHHHHHHH T ss_conf 9837-999999999999999825544224739999999999997268998775898854877888729987778999999 Q ss_pred HHHHHHH Q ss_conf 7788754 Q gi|254780286|r 137 SFRIVTE 143 (410) Q Consensus 137 ~~Rilt~ 143 (410) +++|+.+ T Consensus 148 ~~~ll~~ 154 (324) T d3dy8a1 148 AFQILAE 154 (324) T ss_dssp HHHHHTS T ss_pred HHHHHCC T ss_conf 9999718 No 10 >d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]} Probab=93.15 E-value=0.036 Score=32.34 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=33.1 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHH-----H--HHHHHHHHHCCCCCCC Q ss_conf 7066208889999999999988399988-----9--9999988862899886 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRIDED-----L--VEAIALAHDFGHPPFG 114 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~~d-----l--vea~~L~HDiGhpPFG 114 (410) =+|| -+|...|.|..-.+-...++... + +=.|||+||+|||=.- T Consensus 78 pyHN-~~HA~dV~q~~~~~l~~~~l~~~l~~~e~~alliAal~HDv~HpG~~ 128 (326) T d1tbfa_ 78 AYHN-WRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHPGVS 128 (326) T ss_dssp SSSS-HHHHHHHHHHHHHHHHTTCCGGGSCHHHHHHHHHHHHHTTTTCCSSC T ss_pred CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf 9836-99999999999999966898766988999999999887516899865 No 11 >d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]} Probab=92.06 E-value=0.036 Score=32.39 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=34.7 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCH-----H--HHHHHHHHHHCCCCCCCCCHHHHH Q ss_conf 706620888999999999998839998-----8--999999888628998865478999 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRIDE-----D--LVEAIALAHDFGHPPFGHVGEDVL 121 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----d--lvea~~L~HDiGhpPFGH~GE~al 121 (410) =+|| -+|+..|.|..-.+-...++.. + ..=.|||+||+||| |-...--+ T Consensus 73 pyHN-~~HA~dV~q~~~~ll~~~~l~~~l~~~e~~alliAal~HDv~Hp--G~~N~fl~ 128 (326) T d1y2ka1 73 AYHN-NIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHP--GVSNQFLI 128 (326) T ss_dssp SSSS-HHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCC--SSCHHHHH T ss_pred CCCC-HHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHHCCCCC--CCCCHHHH T ss_conf 9725-99999999999999966362322799999999999998645878--98826887 No 12 >d1xx7a_ a.211.1.1 (A:) Oxetanocin-like protein PF0395 {Pyrococcus furiosus [TaxId: 2261]} Probab=91.08 E-value=0.15 Score=27.79 Aligned_cols=38 Identities=34% Similarity=0.425 Sum_probs=32.0 Q ss_pred CCCHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHCC Q ss_conf 662088899999999999883-----99988999999888628 Q gi|254780286|r 72 RTRLMHTIEVSQIARSLARAL-----RIDEDLVEAIALAHDFG 109 (410) Q Consensus 72 rtRLtHslEVa~i~rsi~~~l-----~~~~dlvea~~L~HDiG 109 (410) -|=-.||..||.+|-.++..+ .+|.+-|-.+||.||++ T Consensus 28 EsVAeHs~~vA~ia~~la~~~~~~~~~vd~~k~~~maL~HDl~ 70 (172) T d1xx7a_ 28 ESVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLG 70 (172) T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 6399999999999999878876444346899999999985128 No 13 >d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} Probab=90.63 E-value=0.51 Score=23.89 Aligned_cols=149 Identities=18% Similarity=0.121 Sum_probs=72.8 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHH-HCCC-----CCCCCC Q ss_conf 706620888999999999998839998-----89--9999988862899886547899999973-1255-----457765 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELLS-SYGG-----FDHNIQ 136 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~~-~~~g-----FegNaQ 136 (410) -+|| -+|...|.|..-.+-...++.. ++ +=.|||+||+|||-.--+-...-+.... -|++ =-|=+. T Consensus 76 PYHN-~~HA~dV~q~~~~lL~~~~~~~~l~~~E~~alliAal~HD~~HpG~~N~flv~s~~~LA~lYnd~SvLEnhH~~~ 154 (357) T d1taza_ 76 PYHN-QIHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISS 154 (357) T ss_dssp SSSS-HHHHHHHHHHHHHHHHHHSGGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHH T ss_pred CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHCCCCCHHHHHHHHH T ss_conf 7535-999999999999999635632338999999999999988248899635799863887888639987789999999 Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHH---HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC-HHHHHHHHHH Q ss_conf 778875432114670100024788---877634757788644455210014577667640223133667-3217986565 Q gi|254780286|r 137 SFRIVTELECSYADFDGINLTWET---LEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFAS-LEGQVAAIAD 212 (410) Q Consensus 137 ~~Rilt~LE~~~~~~~GLNLT~at---L~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-lEa~iveaAD 212 (410) +|+|+.+-+.. -+ .||+-+. +-.++.- ...+.+..+. ......+............. +-.-+|-+| T Consensus 155 ~~~lL~~~~~~--i~--~~l~~~~~~~~r~~ii~--~ILaTDm~~H---~~~l~~~~~~~~~~~~~~r~~~~~~lik~A- 224 (357) T d1taza_ 155 VFRLMQDDEMN--IF--INLTKDEFVELRALVIE--MVLATDMSCH---FQQVKTMKTALQQLERIDKPKALSLLLHAA- 224 (357) T ss_dssp HHHHTTSGGGC--TT--TTSCHHHHHHHHHHHHH--HHHTTCGGGH---HHHHHHHHHHHHC--CCCHHHHHHHHHHHH- T ss_pred HHHHHCCCCHH--HC--CCCCHHHHHHHHHHHHH--HHHHCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC- T ss_conf 99998061000--10--38998999999999999--9822226768---999999999997411410999999999862- Q ss_pred HHHHHHHHHHHHHHHHH Q ss_conf 54432120798998753 Q gi|254780286|r 213 DIAYDAHDIDDGVRAGL 229 (410) Q Consensus 213 DIAY~~hDlEDai~~gl 229 (410) ||+..+...+-+.+-.- T Consensus 225 Dis~~~rp~~~~~~W~~ 241 (357) T d1taza_ 225 DISHPTKQWLVHSRWTK 241 (357) T ss_dssp HTCGGGSCHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHH T ss_conf 35542367799999999 No 14 >d2paqa1 a.211.1.1 (A:2-187) 5'-nucleotidase YfbR {Escherichia coli [TaxId: 562]} Probab=88.52 E-value=0.28 Score=25.81 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=31.5 Q ss_pred CCCCHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHCC Q ss_conf 066208889999999999988------399988999999888628 Q gi|254780286|r 71 YRTRLMHTIEVSQIARSLARA------LRIDEDLVEAIALAHDFG 109 (410) Q Consensus 71 ~rtRLtHslEVa~i~rsi~~~------l~~~~dlvea~~L~HDiG 109 (410) --|=-.||.-||.+|-.++.. ..+|.+-|-..||.||++ T Consensus 26 ~EsVAeHs~~vA~ia~~l~~~~~~~~g~~vd~~k~~~~aL~HDl~ 70 (186) T d2paqa1 26 TENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDAS 70 (186) T ss_dssp CCBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTT T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCHH T ss_conf 868999999999999998277765035567999999999971049 No 15 >d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Probab=85.40 E-value=0.61 Score=23.27 Aligned_cols=37 Identities=24% Similarity=0.106 Sum_probs=29.3 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHCC Q ss_conf 620888999999999998839998---8999999888628 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALRIDE---DLVEAIALAHDFG 109 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~~~~---dlvea~~L~HDiG 109 (410) |=-.||.-||-+|-.|+...+.+. +=|-..||.||++ T Consensus 32 sVAeHs~~vA~ia~~la~~~~~~~~~~~k~~~maL~HDl~ 71 (167) T d1ynba1 32 SVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLH 71 (167) T ss_dssp BHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTT T ss_pred CHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH T ss_conf 8899999999999999878188521099999999999999 No 16 >d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} Probab=80.52 E-value=0.24 Score=26.35 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=15.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHH Q ss_conf 8706620888999999999998 Q gi|254780286|r 69 DHYRTRLMHTIEVSQIARSLAR 90 (410) Q Consensus 69 d~~rtRLtHslEVa~i~rsi~~ 90 (410) -=|||+ +|...|.|-.-.+-. T Consensus 76 nPYHN~-~HA~dV~q~~~~lL~ 96 (415) T d1so2a_ 76 IPYHNR-IHATDVLHAVWYLTT 96 (415) T ss_dssp CSSSSH-HHHHHHHHHHHHHTT T ss_pred CCCCCH-HHHHHHHHHHHHHHH T ss_conf 988278-999999999999995 No 17 >d1u6za1 a.211.1.5 (A:313-509) Exopolyphosphatase Ppx C-terminal domain {Escherichia coli [TaxId: 562]} Probab=79.36 E-value=1.5 Score=20.48 Aligned_cols=76 Identities=13% Similarity=0.092 Sum_probs=50.5 Q ss_pred CCHHHHHHHHHHHHHHHHHC------CCCH---HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 62088899999999999883------9998---89999998886289988654789999997312554577657788754 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARAL------RIDE---DLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTE 143 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l------~~~~---dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~ 143 (410) .-..|+--|+..|..|-..+ +..+ .++++||+.||||.- ...-.|.-+|+-|+.. T Consensus 16 vd~~ha~~V~~~A~~Lfd~l~~~~~~~~~~~~~~lL~~AA~LHeiG~~----------------I~~~~~hkHs~Yii~n 79 (197) T d1u6za1 16 IDSEQARRVLDTTMQMYEQWREQQPKLAHPQLEALLRWAAMLHEVGLN----------------INHSGLHRHSAYILQN 79 (197) T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHHHHHTTTTTT----------------TCSTTHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCC----------------CCCCCHHHHHHHHHHC T ss_conf 799999999999999999988754766687899999999999861722----------------5875377889999958 Q ss_pred HHHCCCCCCCCCHH-HHHHHHHHCCCC Q ss_conf 32114670100024-788877634757 Q gi|254780286|r 144 LECSYADFDGINLT-WETLEGLIGHNG 169 (410) Q Consensus 144 LE~~~~~~~GLNLT-~atL~~iiKyp~ 169 (410) -+ ..|++-. ...++.++.|-. T Consensus 80 ~~-----l~Gfs~~E~~~iA~l~~~hr 101 (197) T d1u6za1 80 SD-----LPGFNQEQQLMMATLVRYHR 101 (197) T ss_dssp SC-----CTTCCHHHHHHHHHHHHTSS T ss_pred CC-----CCCCCHHHHHHHHHHHHHHC T ss_conf 87-----79999999999999999845 No 18 >d1vqra_ a.211.1.3 (A:) Hypothetical protein Cj0248 {Campylobacter jejuni [TaxId: 197]} Probab=75.44 E-value=0.58 Score=23.46 Aligned_cols=42 Identities=14% Similarity=0.062 Sum_probs=30.8 Q ss_pred CCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCCC Q ss_conf 662088899999999999883-999889999998886289988 Q gi|254780286|r 72 RTRLMHTIEVSQIARSLARAL-RIDEDLVEAIALAHDFGHPPF 113 (410) Q Consensus 72 rtRLtHslEVa~i~rsi~~~l-~~~~dlvea~~L~HDiGhpPF 113 (410) ..-..||+.||.+++.+++.. +.+++.+-.++|.||||-..+ T Consensus 112 ~~~w~~s~~~a~~~~~~~~~~~~~~~~~a~~aGLLhdiG~l~l 154 (286) T d1vqra_ 112 QNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIF 154 (286) T ss_dssp HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHH T ss_conf 9999888999999999998743436899999899985149999 No 19 >d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Probab=64.92 E-value=2 Score=19.42 Aligned_cols=57 Identities=21% Similarity=0.236 Sum_probs=36.2 Q ss_pred CCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC Q ss_conf 0000110273462327574787169998706620888999999999998839998899999988862 Q gi|254780286|r 42 RDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDF 108 (410) Q Consensus 42 rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDi 108 (410) .|.+.|--.-.|-+-.+.-|+-.-++ .+ .+|.++||.|-. .++.+++.+.| ||.||. T Consensus 19 ~d~~~i~~A~~~A~~~H~gq~r~sG~-py----~~H~~~VA~iL~----~~~~d~~~i~A-alLhd~ 75 (192) T d1vj7a1 19 TDAAFVKKALDYATAAHFYQVRKSGE-PY----IVHPIQVAGILA----DLHLDAVTVAC-GFLHDV 75 (192) T ss_dssp HHHHHHHHHHHHHHHHTTTCBCTTSC-BT----THHHHHHHHHHH----HTTCCHHHHHH-HHHTTH T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHH-HH----HHHHHHHHHHHH----HHCCCHHHHHH-HHEECH T ss_conf 88999999999999997588566759-99----999999999877----70587477632-102141 No 20 >d1ufba_ a.24.16.3 (A:) Hypothetical protein TT1696 {Thermus thermophilus [TaxId: 274]} Probab=54.71 E-value=2.6 Score=18.68 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=23.6 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHH Q ss_conf 999998886289988654789999997312554577657788754 Q gi|254780286|r 99 VEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTE 143 (410) Q Consensus 99 vea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~ 143 (410) +-| .|.+. |.||.+|.-..-++.+-....-++....-++.|+. T Consensus 42 lKA-ll~~~-g~~pktH~l~~L~~~l~~~~~~~~~~~~~~~~L~~ 84 (127) T d1ufba_ 42 LKG-LHLAR-GQVAWGHSILDLLADLPEDVDVPEDLVEAAKVLDK 84 (127) T ss_dssp HHH-HHHHT-TCCCCSSCHHHHHHTSCTTSCCCHHHHHHHHHHHT T ss_pred HHH-HHHHC-CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHH T ss_conf 999-99975-88888878999999998866686678999999999 No 21 >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} Probab=48.83 E-value=2 Score=19.44 Aligned_cols=10 Identities=20% Similarity=0.222 Sum_probs=3.6 Q ss_pred CCCCCCCHHH Q ss_conf 5457765778 Q gi|254780286|r 130 GFDHNIQSFR 139 (410) Q Consensus 130 gFegNaQ~~R 139 (410) |.|-|.++.+ T Consensus 211 G~E~~~~~~~ 220 (524) T d2ar0a1 211 GLELVPGTRR 220 (524) T ss_dssp EEESCHHHHH T ss_pred HHCCCHHHHH T ss_conf 5306789999 No 22 >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} Probab=48.53 E-value=2.1 Score=19.33 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=3.9 Q ss_pred HHHHHHHHHH Q ss_conf 9999999999 Q gi|254780286|r 338 ANVIRNLFSA 347 (410) Q Consensus 338 ~~iI~~Lf~~ 347 (410) ..+-+.|++. T Consensus 310 ~~iR~~Ll~~ 319 (425) T d2okca1 310 ETIRKRLLQD 319 (425) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 8999999983 No 23 >d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]} Probab=41.82 E-value=6.5 Score=15.68 Aligned_cols=23 Identities=17% Similarity=-0.026 Sum_probs=20.3 Q ss_pred EECCCCHHHHHHHHHHHHCCCCC Q ss_conf 00673369999999998188988 Q gi|254780286|r 379 YLAGMTDSYAIREHHILFGYIPD 401 (410) Q Consensus 379 YIAGMTD~YAi~ly~kL~G~~p~ 401 (410) -.+||+-++..+++++.+|.+|- T Consensus 27 ~~~~~S~~~l~r~Fk~~~g~tp~ 49 (54) T d1d5ya1 27 AKAGYSKWHLQRMFKDVTGHAIG 49 (54) T ss_dssp TTTSSCHHHHHHHHHHHHSSCHH T ss_pred HHHCCCHHHHHHHHHHHHCCCHH T ss_conf 99892999999999999990999 No 24 >d2gx9a1 d.299.1.1 (A:79-205) Non-structural protein NS1 C-terminal domain {Influenza A virus [TaxId: 11320]} Probab=36.79 E-value=3.1 Score=18.12 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=21.8 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 65478999999731255457765778875432 Q gi|254780286|r 114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145 (410) Q Consensus 114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE 145 (410) ||.+|++=+..=--.||+|-|-++.|+-..|+ T Consensus 90 Ght~EDvknaigvligglewndntvrvse~lq 121 (127) T d2gx9a1 90 GHTAEDVKNAVGVLIGGLEWNDNTVRVSETLQ 121 (127) T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCEEEECHHHH T ss_pred CCCHHHHHHHHHHHCCCEEECCCEEEHHHHHH T ss_conf 98657888779984033145586330778998 No 25 >d1o3ua_ a.24.16.3 (A:) Hypothetical protein TM0613 {Thermotoga maritima [TaxId: 2336]} Probab=36.70 E-value=9.4 Score=14.50 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=19.2 Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHH Q ss_conf 99888628998865478999999731255457765778875 Q gi|254780286|r 102 IALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVT 142 (410) Q Consensus 102 ~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt 142 (410) ++|.. .|.||.+|.=-..++.......-++.+.--++.|+ T Consensus 40 a~l~~-~g~~pk~H~l~~Ll~~l~~~~~~~~~~~~~~~~L~ 79 (126) T d1o3ua_ 40 AVFQR-MGAQAWGYSVPDFLGELSSRFEIPEELMDHALELD 79 (126) T ss_dssp HHHHH-HTCCCCCSSHHHHHHHHTTTSCCCHHHHHHHHHHH T ss_pred HHHHH-CCCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHH T ss_conf 99998-49998777999999999876521179999999998 No 26 >d1bl0a1 a.4.1.8 (A:9-62) MarA {Escherichia coli [TaxId: 562]} Probab=35.46 E-value=9.8 Score=14.36 Aligned_cols=23 Identities=13% Similarity=-0.106 Sum_probs=19.3 Q ss_pred EECCCCHHHHHHHHHHHHCCCCC Q ss_conf 00673369999999998188988 Q gi|254780286|r 379 YLAGMTDSYAIREHHILFGYIPD 401 (410) Q Consensus 379 YIAGMTD~YAi~ly~kL~G~~p~ 401 (410) -.+||+=++..+..++.+|.+|- T Consensus 27 ~~~~~s~~~l~r~Fk~~~g~tp~ 49 (54) T d1bl0a1 27 ERSGYSKWHLQRMFKKETGHSLG 49 (54) T ss_dssp HHSSSCHHHHHHHHHHHHSSCHH T ss_pred HHHCCCHHHHHHHHHHHHCCCHH T ss_conf 99893999999999999991999 No 27 >d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052 {Agrobacterium tumefaciens [TaxId: 358]} Probab=31.87 E-value=11 Score=13.96 Aligned_cols=44 Identities=27% Similarity=0.349 Sum_probs=22.5 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH Q ss_conf 6208889999999999988399988999999888628998865478999999731 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSS 127 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~ 127 (410) +=--||+-|+.|-+.+.. +..+...- +||.|| +-|.+++++-.- T Consensus 50 SVAqHsvlv~~i~~~~~~--~~~~~~~l-~aLLHD--------A~E~~~gD~~sP 93 (200) T d2gz4a1 50 TVAQHCLIVETIFCRMCP--GATPDEMQ-MALLHD--------APEYVIGDMISP 93 (200) T ss_dssp BHHHHHHHHHHHHHHHCT--TCCHHHHH-HHHTTT--------TTHHHHCCCCGG T ss_pred CHHHHHHHHHHHHHHHCC--CCCHHHHH-HHHHCC--------CHHHHHCCCCHH T ss_conf 299999999999998678--99989999-998646--------799986366607 No 28 >d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=30.66 E-value=7.7 Score=15.15 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=14.8 Q ss_pred EEEHHEECCCCHHHHHHHHHHHHCCCCCCC Q ss_conf 030200067336999999999818898855 Q gi|254780286|r 374 RHVGDYLAGMTDSYAIREHHILFGYIPDFA 403 (410) Q Consensus 374 R~V~DYIAGMTD~YAi~ly~kL~G~~p~~~ 403 (410) +.|++.|.|+| .+.-+++||+..|+. T Consensus 37 ~~vA~~ikgkt----~eeiR~~f~I~~D~t 62 (70) T d1nexa1 37 KVVAEMIRGRS----PEEIRRTFNIVNDFT 62 (70) T ss_dssp HHHHHHHTTCC----HHHHHHHHTCCCCCC T ss_pred HHHHHHHCCCC----HHHHHHHHCCCCCCC T ss_conf 99999982599----999999959999999 No 29 >d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]} Probab=23.87 E-value=15 Score=12.98 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=9.3 Q ss_pred ECCCCHHHHHHHHHHH Q ss_conf 0673369999999998 Q gi|254780286|r 380 LAGMTDSYAIREHHIL 395 (410) Q Consensus 380 IAGMTD~YAi~ly~kL 395 (410) .+|+||..|.++|.-. T Consensus 3 ~sGLT~~EA~EfH~~~ 18 (43) T d1lghb_ 3 LSGLTEEEAIAVHDQF 18 (43) T ss_dssp SSSCCHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHH T ss_conf 7769899999999999 No 30 >d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]} Probab=21.22 E-value=17 Score=12.61 Aligned_cols=16 Identities=31% Similarity=0.474 Sum_probs=10.3 Q ss_pred ECCCCHHHHHHHHHHH Q ss_conf 0673369999999998 Q gi|254780286|r 380 LAGMTDSYAIREHHIL 395 (410) Q Consensus 380 IAGMTD~YAi~ly~kL 395 (410) .+|+||..|-++|.-. T Consensus 8 ~tGLT~~EA~E~H~~~ 23 (48) T d1jo5a_ 8 YTGLTDEQAQELHSVY 23 (48) T ss_dssp TGGGHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHH T ss_conf 7779899999999999 Done!