RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] (410 letters) >gnl|CDD|179272 PRK01286, PRK01286, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional. Length = 336 Score = 425 bits (1095), Expect = e-119 Identities = 167/380 (43%), Positives = 224/380 (58%), Gaps = 56/380 (14%) Query: 17 YAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLM 76 YAA S GR+ PE+ R+EFQRDRDR+IH+ AFRRLK KTQVF + + DHYRTRL Sbjct: 6 YAALSANSRGRLRPEEPCPIRTEFQRDRDRIIHSKAFRRLKHKTQVFINPEGDHYRTRLT 65 Query: 77 HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136 HT+EV+QIAR++ARALR++EDL EAIAL HD GH PFGH GED L EL+ YGGF+HN Q Sbjct: 66 HTLEVAQIARTIARALRLNEDLTEAIALGHDLGHTPFGHAGEDALNELMKEYGGFEHNEQ 125 Query: 137 SFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLS 196 S R+V +LE Y DG+NLTWE EG++ H+GP Sbjct: 126 SLRVVDKLEKRY---DGLNLTWEVREGILKHSGPRNAP---------------------- 160 Query: 197 LANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLD 256 L A+LEGQ+ +AD+IAY+ HDIDDG+RAGL+T++ L E D Sbjct: 161 LGTAATLEGQIVRLADEIAYNNHDIDDGIRAGLITLEDLPE------------------D 202 Query: 257 DKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEI 316 +RL+ E RR+I +V D+I +Q+ +A ++ FS+E+ KE+ Sbjct: 203 VRRLLGETHRRRINTLVVDLIKNTQRNLAEGAAAP---------PLVSFSEEVAEAMKEL 253 Query: 317 KSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHV 376 + L + VYRHP + + ++++LF YM DP + EY+ + R V Sbjct: 254 RRFLFENVYRHPKVKREREKAKRIVQDLFEYYMEDPELLPP----EYQNIAEEEGLERAV 309 Query: 377 GDYLAGMTDSYAIREHHILF 396 DY+AGMTD YA+RE+ LF Sbjct: 310 ADYIAGMTDRYALREYRRLF 329 >gnl|CDD|162314 TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate triphosphohydrolase, putative. dGTP triphosphohydrolase (dgt) releases inorganic triphosphate, an unusual activity reaction product, from GTP. Its activity has been called limited to the Enterobacteriaceae, although homologous sequences are detected elsewhere. This finding casts doubt on whether the activity is shared in other species. In several of these other species, the homologous gene is found in an apparent operon with dnaG, the DNA primase gene. The enzyme from E. coli was shown to bind coopertatively to single stranded DNA. The biological role of dgt is unknown. Length = 381 Score = 293 bits (751), Expect = 7e-80 Identities = 135/386 (34%), Positives = 190/386 (49%), Gaps = 29/386 (7%) Query: 36 TRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARAL--- 92 R+ F+RD DR+IH++AFRRL+DKTQVF + D RTRL H++EV+Q+ RS+A + Sbjct: 1 ERTPFERDYDRIIHSSAFRRLQDKTQVFPLAENDFVRTRLTHSLEVAQVGRSIANLIGLR 60 Query: 93 --------RIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG-GFDHNIQSFRIVTE 143 E L E LAHD G+PPFGH GE L + + YG GF+ N Q+FRI+T Sbjct: 61 YDLELEELGPFERLAETACLAHDIGNPPFGHAGERALNDWMREYGPGFEGNAQTFRILTT 120 Query: 144 LECSYADFDGINLTWETLEGLIGHNGPI-----LPQDLDKPRIIPRIFSDYYH--IHGLS 196 LE G+NLTW TL G++ + P L+K + I + L Sbjct: 121 LEKRRRAKGGLNLTWRTLAGILKYPRPSSEDAFKGGYLNKKKGIYDSELAVFDRVAELLG 180 Query: 197 LANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLY--GH 254 L + S Q+ ADDIAY HD++D ++ GLLT D L+ L A +L Sbjct: 181 LTWYRSPLAQLMEAADDIAYTVHDLEDAIKLGLLTFDDLQH---LLLIQAGFEELGSEMT 237 Query: 255 LDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSA-GYRIIDFSDEMTLVD 313 +E +R ++ D+I K H + + + +++FS + + Sbjct: 238 DLSISAENEQIRSLRGKLITDLIESVAKAEFS--SHLVAILIGTFHHTLVEFSPRLAELL 295 Query: 314 KEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKM-RGCNQLEYERDMTD-SI 371 + +K L K VYRHP + Q +I LF A+M D R D Sbjct: 296 EALKKFLRKRVYRHPDVERIEYQGEQIITGLFDAFMPDLPPRLLPPELRSKLRKAEDNYY 355 Query: 372 KARHVGDYLAGMTDSYAIREHHILFG 397 KAR V DY+AGMTD YA+ E+ LFG Sbjct: 356 KARVVCDYIAGMTDRYALEEYRRLFG 381 >gnl|CDD|180010 PRK05318, PRK05318, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional. Length = 432 Score = 182 bits (464), Expect = 1e-46 Identities = 126/442 (28%), Positives = 191/442 (43%), Gaps = 113/442 (25%) Query: 37 RSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRI-- 94 RS +QRDR R++H+ AFRRL+ KTQV + D YRTRL H++EV+QI + L+ Sbjct: 22 RSPYQRDRARILHSAAFRRLQAKTQVLGVGENDFYRTRLTHSLEVAQIGTGIVAQLKKEK 81 Query: 95 ---------DEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145 + L+E++ LAHD GHPPFGH GE L ++ +GGF+ N Q+FRI+T+LE Sbjct: 82 QPELKPLLPSDSLIESLCLAHDIGHPPFGHGGEVALNYMMRDHGGFEGNGQTFRILTKLE 141 Query: 146 CSYADFDGINLTWETLEGLIGHNGPI-------LPQDLDKPRIIPR--------IFSDYY 190 Y + G+NLT TL G++ + P D+ R + IF D Sbjct: 142 -PYTEHFGMNLTRRTLLGILKYPALYSELVAQYPPPDVANHRQLKASDWKPPKGIFDDDQ 200 Query: 191 HI----------------------------HGLSLANFASLEGQVAAIADDIAYDAHDID 222 I H + + SL+ + +ADDIAY HD++ Sbjct: 201 DIFDWVLEPLSENDRALFQSLRPEPDSPKEHLKTR--YKSLDCSIMELADDIAYGVHDLE 258 Query: 223 DGVRAGLLTVDMLKEI----------SFLEKHIASLHD-LYGHLDDKRLVHELVRRQITA 271 D + GL+T +E +LE+ I ++ + L+ R + I Sbjct: 259 DAIVLGLVTRSQWQEDVAPQLAQCGDPWLEEEIETIGEKLFSGEHHLR------KDAIGT 312 Query: 272 MVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSD-----------EMTLVDKEIKSML 320 +V IT +K + +F + E + +K + Sbjct: 313 LVNYFITS-----IRIKENE------------EFEEPLLRYNAALEPEFAAALEVLKQFV 355 Query: 321 VKYVYRHPSIMTCCNQI-----ANVIRNLFSAYMSDP-RKMRGCNQLEYERDMTDSIKAR 374 KYV R P + Q ++ LF A SDP R + Q + + + R Sbjct: 356 YKYVIRKPEV-----QRLEYKGQQIVMELFEALSSDPERLLPRNTQERWRKAEDEENSMR 410 Query: 375 HVGDYLAGMTDSYAIREHHILF 396 + DY++GMTD YA R + LF Sbjct: 411 VICDYISGMTDEYAYRLYQQLF 432 >gnl|CDD|179526 PRK03007, PRK03007, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional. Length = 428 Score = 169 bits (431), Expect = 9e-43 Identities = 89/221 (40%), Positives = 118/221 (53%), Gaps = 23/221 (10%) Query: 27 RMYPE--KRSL------TRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHT 78 R PE K + R++F RDR R++H+ A RRL DKTQV R+ D RTRL H+ Sbjct: 16 RRVPEPPKSAGLPTEGQHRTDFARDRARVLHSAALRRLADKTQVVGPREGDTPRTRLTHS 75 Query: 79 IEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSF 138 +EV+QI R +A L D DLV+ LAHD GHPP+GH GE L E+ + GGF+ N Q+ Sbjct: 76 LEVAQIGRGIAAGLGCDPDLVDLAGLAHDIGHPPYGHNGERALDEVAADCGGFEGNAQTL 135 Query: 139 RIVTELECSYADFD----GINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYH--- 191 RI+T LE D D G+NLT +L+ + P + R F Y Sbjct: 136 RILTRLEPKVLDPDGRSAGLNLTRASLDAACKY--PWTRG--EADGSPRRKFGFYDDDRE 191 Query: 192 ----IHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAG 228 + + A LE QV ADD+AY HD++DGV +G Sbjct: 192 VFAWVRQGAPAGRPCLEAQVMDWADDVAYSVHDVEDGVVSG 232 >gnl|CDD|179219 PRK01096, PRK01096, deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional. Length = 440 Score = 145 bits (368), Expect = 2e-35 Identities = 114/449 (25%), Positives = 173/449 (38%), Gaps = 92/449 (20%) Query: 22 TQSLG-RMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIE 80 + LG + K L RS F +D DR+I + +FRRL+ KTQV + DH TRL H++E Sbjct: 9 RERLGKKGKTSKDELGRSPFHKDYDRIIFSGSFRRLQRKTQVHPLAKNDHIHTRLTHSLE 68 Query: 81 VSQIARSLARALRIDE-----------------DLVEAIALAHDFGHPPFGHVGEDVLQE 123 VS + RSL +R+ E +V++ LAHD G+PPFGH GED ++E Sbjct: 69 VSCVGRSL--GMRVGETLKEEKLPDWISPADIGAIVQSACLAHDIGNPPFGHFGEDAIRE 126 Query: 124 LLSSYGG-----------------FDHNIQSFRIVTELECSYADFD-GINLTWETLEGLI 165 G F+ N Q FR++T+LE Y D G+ LT+ TL I Sbjct: 127 WFQDAAGRGFLDDLSPQERADFLNFEGNAQGFRVLTKLE--YHQDDGGMRLTYATLGTYI 184 Query: 166 GHNGPILPQDLDKPRIIPRIFSDYYH--------IHGLSLANFASLEGQVAA-------- 209 + P + +K +I + F Y L L L Q Sbjct: 185 KY--PWSSRHANKQQIKKKKFGCYQSELPLFEQIAEALGLPQ---LGEQRWCRHPLTYLL 239 Query: 210 -IADDIAYDAHDIDDGVRAGLLTVDMLKEI-SFLEKHIASLHDLYGHLDDKRLVHELVRR 267 ADDI Y D++DG+ GLL ++ + L L ++ + L + Sbjct: 240 EAADDICYALIDLEDGLEMGLLNYQEVEALFLELIGDKEKYRQLGPQDSRRQKLARLRGK 299 Query: 268 QITAMVEDVITV---SQKRIAH--LKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVK 322 I +V V + I L I R + ++ K + + Sbjct: 300 AIGRLVNAVAEAFVENYDAILAGTLPGDLIEHCDPDAKRCV----------QQAKDLARE 349 Query: 323 YVYRHPSIM-----------TCCNQIANVIRNLFSAYMSDPRKMRGCNQL-EYERDMTDS 370 +++H + + S + R + L + D T Sbjct: 350 KIFQHKRKVELEIGAYTILEILLDAFVPAALYYDSGTTPSFKDKRLLDLLGDNAPDPTMK 409 Query: 371 IKARH--VGDYLAGMTDSYAIREHHILFG 397 + R V D+++GMTDSYA L G Sbjct: 410 LYLRLLRVLDFISGMTDSYAKELAQELTG 438 >gnl|CDD|179894 PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase; Provisional. Length = 503 Score = 99.6 bits (249), Expect = 1e-21 Identities = 113/519 (21%), Positives = 176/519 (33%), Gaps = 179/519 (34%) Query: 27 RMYP------EKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIE 80 R Y + + R F+ DR R+I++ A RRL+ KTQVF + R+RL H++E Sbjct: 14 RRYRSPQGVKTEHEILR-IFESDRGRIINSAAIRRLQQKTQVFPLERNAAVRSRLTHSLE 72 Query: 81 VSQIARSLAR-------------ALRID------EDLVEAIALAHDFGHPPFGHVGEDVL 121 V Q+ R +A+ A +D E +VE L HD G+PPFGH GE + Sbjct: 73 VQQVGRYIAKEILSRLKEQKLLEAYGLDELTGPFESIVEMACLMHDIGNPPFGHFGEAAI 132 Query: 122 -----QELLSSYGG-----------------------------------FDHNIQSFRIV 141 Q L F+ N Q R+V Sbjct: 133 NDWFRQRLDPDAESQPLTDDRCSVAALRLRDGEEPLNELRRKIRQDLCHFEGNAQGIRLV 192 Query: 142 TELECSYADFDGINLTWETLEGLI------GHNGPILPQDLD----KPRIIPRIFSDYYH 191 L +NLT+ + ++ GP P KP YY Sbjct: 193 HTLL-------RLNLTYAQVACILKYTRPAWWRGPT-PASHHYLMKKP--------GYY- 235 Query: 192 IHGLSLANF-ASL-------EGQ---VAAI---ADDIAYDAHDIDDGVRAGLLTVDMLKE 237 LS + A L + I ADDI+Y D++D V + +V+ L Sbjct: 236 ---LSEEAYVARLRKELNLAPYSRFPLTYIMEAADDISYCIADLEDAVEKRIFSVEQL-- 290 Query: 238 ISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRI--AHLKPHAIHDI 295 LH+ +G + L +V + ++ S + +L+ + ++ + Sbjct: 291 -------YHHLHEAWGEHEKGDLFSLVVENAWEKSRANSLSRSSEDQFFMYLRVNTLNKL 343 Query: 296 -RSAGYRIIDF-----------------SDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQI 337 A R ID S L+ K K++ K+V+ HP + Q Sbjct: 344 VPYAAQRFIDNLPAIFAGTFNQALLEDASPASRLL-KTFKNVARKHVFSHPEVEQLELQG 402 Query: 338 ANVIRNL--------------FSAYMSDPRK------------------------MRGCN 359 VI L F+ + R + Sbjct: 403 YRVISGLLDIYSPLLALPLEDFTELVEKERHKRYPIETRLFHKLSTRHRLAYVEAVSKLP 462 Query: 360 QLEYERDMTD-SIKARHVGDYLAGMTDSYAIREHHILFG 397 E + + +AR + DY++GMTD YA E+ L Sbjct: 463 SDSPEFPLWEYYYRARLIQDYISGMTDLYAWDEYRRLMA 501 >gnl|CDD|128747 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif. Includes eukaryotic cyclic nucleotide phosphodiesterases (PDEc). This profile/HMM does not detect HD homologues in bacterial glycine aminoacyl-tRNA synthetases (beta subunit). Length = 124 Score = 45.4 bits (107), Expect = 3e-05 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Query: 72 RTRLMHTIEVSQIARSLARALR-IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGG 130 H++ V+Q+A +LA L +D +L+ AL HD G P L Sbjct: 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSFLVKTSVL------ 56 Query: 131 FDHNIQSFRIVTELEC 146 DH+ I+ E E Sbjct: 57 EDHHFIGAEILLEEEE 72 >gnl|CDD|161799 TIGR00277, HDIG, uncharacterized domain HDIG. This domain is found in a few known nucleotidyltransferes and in a large number of uncharacterized proteins. It contains four widely separated His residues, the second of which is part of an invariant dipeptide His-Asp in a region matched approximately by the motif HDIG. Length = 80 Score = 37.3 bits (87), Expect = 0.008 Identities = 16/35 (45%), Positives = 24/35 (68%) Query: 77 HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHP 111 H++EV+++A +LAR L +D +L AL HD G P Sbjct: 8 HSLEVAKLAEALARELGLDVELARRGALLHDIGKP 42 >gnl|CDD|132362 TIGR03319, YmdA_YtgF, conserved hypothetical protein YmdA/YtgF. Length = 514 Score = 33.4 bits (77), Expect = 0.13 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%) Query: 68 RDHYRTR-----LMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109 R +RT L H+IEV+ +A +A L D L + L HD G Sbjct: 319 RLKFRTSYGQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIG 365 >gnl|CDD|179589 PRK03525, PRK03525, crotonobetainyl-CoA:carnitine CoA-transferase; Provisional. Length = 405 Score = 31.6 bits (72), Expect = 0.33 Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 48/167 (28%) Query: 96 EDLVEAIALAHDFGHP--------------PFGHVGEDVLQELLSSYGGFD-------HN 134 ++ + I LAH G P P+G + E+ L L+++ + N Sbjct: 257 KECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVEARFAELN 316 Query: 135 IQSFRIVT--ELECS--YADFDGINLTWETLEGLIGHNGPILPQDLDKP----RIIPRIF 186 I +++T ELE + Y + I W+T++G I+P+ + P R +P Sbjct: 317 IACAKVLTIPELESNPQYVARESI-TQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPS-- 373 Query: 187 SDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVD 233 HG AAI +I Y DI + V GL V+ Sbjct: 374 ------HG----------MDTAAILKNIGYSEEDIQELVAKGLAKVE 404 >gnl|CDD|183692 PRK12704, PRK12704, phosphodiesterase; Provisional. Length = 520 Score = 31.7 bits (73), Expect = 0.38 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%) Query: 70 HYRTR-----LMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109 YRT L H+IEV+ +A +A L +D L + L HD G Sbjct: 327 KYRTSYGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIG 371 >gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein; Provisional. Length = 1328 Score = 31.5 bits (71), Expect = 0.42 Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 12/100 (12%) Query: 267 RQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYR 326 R + ++V++++ + KR + K H I + +I+F E + KE+ +L+K R Sbjct: 312 RSLMSIVDEIVEMILKRDSLGKKHGIVLLPEG---LIEFIPEFETLIKELNLILLKTNDR 368 Query: 327 HPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERD 366 I + ++ ++ LF SD + NQL ERD Sbjct: 369 KQII----DSLSQEMKTLFLELPSDVQ-----NQLLLERD 399 >gnl|CDD|129396 TIGR00295, TIGR00295, conserved hypothetical protein TIGR00295. This set of orthologs is narrowly defined, comprising proteins found in three Archaea but not in Pyrococcus horikoshii. The closest homologs are other archaeal proteins that appear to be represent distinct orthologous clusters. Length = 164 Score = 29.8 bits (67), Expect = 1.2 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 20/73 (27%) Query: 77 HTIEVSQIARSLARALR-----IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGF 131 H + V+++A LA +R +D DLV AL HD G + GF Sbjct: 17 HCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGR---------------ARTHGF 61 Query: 132 DHNIQSFRIVTEL 144 +H ++ I+ + Sbjct: 62 EHFVKGAEILRKE 74 >gnl|CDD|162980 TIGR02706, P_butyryltrans, phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs. Length = 294 Score = 29.3 bits (66), Expect = 1.8 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%) Query: 86 RSLARALRIDEDLVEAIALAHDFGHPPFGHVG-EDVLQELLSSYGGFDHNIQSFRIVTE 143 +++A A+ DE ++EA+ A + G VG E+ + E+ G N+ IV Sbjct: 14 KTVAVAVAQDEPVLEAVKEAKEHGIARAILVGDEEKINEIAKKIGM---NLDDVEIVNA 69 >gnl|CDD|180860 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase; Validated. Length = 342 Score = 28.8 bits (65), Expect = 3.1 Identities = 11/36 (30%), Positives = 16/36 (44%) Query: 74 RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109 R H + V+Q+A LA+ +D L HD Sbjct: 197 RYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDIT 232 >gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional. Length = 743 Score = 28.2 bits (63), Expect = 3.5 Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%) Query: 265 VRRQITAMVED---VITVSQKRIAHLK 288 VRR + AMVED V+ +RIAHL+ Sbjct: 135 VRRMLLAMVEDFRCVVIKLAERIAHLR 161 >gnl|CDD|183693 PRK12705, PRK12705, hypothetical protein; Provisional. Length = 508 Score = 28.1 bits (63), Expect = 3.7 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%) Query: 68 RDHYRTR-----LMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109 R ++RT L H++EV+ +A +A + +D L + L HD G Sbjct: 313 RLYFRTSYGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIG 359 >gnl|CDD|181146 PRK07851, PRK07851, acetyl-CoA acetyltransferase; Provisional. Length = 406 Score = 27.7 bits (62), Expect = 5.3 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 9/43 (20%) Query: 89 ARALRIDEDLVE----AIALAHDFGHPPFGHVGEDVLQELLSS 127 AR L IDED + AIAL H PFG G + LL++ Sbjct: 340 ARELGIDEDKLNVSGGAIALGH-----PFGMTGARITTTLLNN 377 >gnl|CDD|148253 pfam06534, RGM_C, Repulsive guidance molecule (RGM) C-terminus. This family consists of several mammalian and one bird sequence from Gallus gallus (Chicken). This family represents the C-terminal region of several sequences but in others it represents the full protein. All of the mammalian proteins are hypothetical and have no known function but a member from chicken is annotated as being a repulsive guidance molecule (RGM). RGM is a GPI-linked axon guidance molecule of the retinotectal system. RGM is repulsive for a subset of axons, those from the temporal half of the retina. Temporal retinal axons invade the anterior optic tectum in a superficial layer, and encounter RGM expressed in a gradient with increasing concentration along the anterior-posterior axis. Temporal axons are able to receive posterior-dependent information by sensing gradients or concentrations of guidance cues. Thus, RGM is likely to provide positional information for temporal axons invading the optic tectum in the stratum opticum. Length = 213 Score = 27.8 bits (62), Expect = 5.4 Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 78 TIEVSQIARSLARALRIDEDLVEA 101 TI V Q+ R L A+R+ E++ A Sbjct: 57 TIIVRQVGRYLTFAVRMPEEVANA 80 >gnl|CDD|184799 PRK14713, PRK14713, multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional. Length = 530 Score = 27.8 bits (62), Expect = 5.4 Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 8/44 (18%) Query: 203 LEGQVAAIADDIAYDAHDIDDGVRAGLL-TVDMLKEI-SFLEKH 244 L Q+ A++DD+ DA V+ G+L +++ + ++L +H Sbjct: 86 LRAQLDAVSDDVTVDA------VKIGMLGDAEVIDAVRTWLAEH 123 >gnl|CDD|183285 PRK11712, PRK11712, ribonuclease G; Provisional. Length = 489 Score = 27.3 bits (61), Expect = 8.5 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 16/84 (19%) Query: 230 LTVDMLKEISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKP 289 LT + LKE F ++I + D H ++ + +L VE+ I + +R LK Sbjct: 237 LTYEELKE--FTSEYIPEMTDKLEHYSGRQPIFDLYD------VENEIQRALERKVELK- 287 Query: 290 HAIHDIRSAGYRIIDFSDEMTLVD 313 S GY IID ++ MT VD Sbjct: 288 -------SGGYLIIDQTEAMTTVD 304 >gnl|CDD|149653 pfam08668, HDOD, HDOD domain. Length = 196 Score = 27.2 bits (61), Expect = 8.7 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 77 HTIEVSQIARSLARALR-IDEDLVEAIALAHDFGHPPFGHVGEDVLQELL 125 H++ + AR LAR L D + L HD G + D +E+L Sbjct: 98 HSLACALAARLLARRLGLDDPEEAFTAGLLHDIGKLILLSLLPDEYEEIL 147 >gnl|CDD|161895 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial. Every known example of the phenylalanyl-tRNA synthetase, except the monomeric form of mitochondrial, is an alpha 2 beta 2 heterotetramer. The beta subunits break into two subfamilies that are considerably different in sequence, length, and pattern of gaps. This model represents the subfamily that includes the beta subunit from Bacteria other than spirochetes, as well as a chloroplast-encoded form from Porphyra purpurea. The chloroplast-derived sequence is considerably shorter at the amino end, however. Length = 798 Score = 27.3 bits (61), Expect = 8.7 Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 13/91 (14%) Query: 265 VRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIID-FSDEMTLVDKEIKSMLVKY 323 V R I+ +V + + I +K + + + D + + + + KS+ ++ Sbjct: 710 VTRDISFLVPKDVPA-NEIIKLIKKSGLELLEE--VELFDVYEGKN--IGEGKKSLALRL 764 Query: 324 VYRHPS-------IMTCCNQIANVIRNLFSA 347 V R I ++ N+++ A Sbjct: 765 VLRDKERTLTDEEINKIVEKVLNLLKEKLGA 795 >gnl|CDD|163130 TIGR03086, TIGR03086, conserved hypothetical protein TIGR03086. This family, like Pfam family pfam07398 and TIGRFAMs family TIGR030834, belongs to the larger set of probable enzymes defined in family TIGR03083. Members are found primarily in the Actinobacteria (Mycobacterium, Streptomyces, etc.). The family is uncharacterized. Length = 180 Score = 27.0 bits (60), Expect = 9.5 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 12/58 (20%) Query: 84 IARSLARALRIDEDLVE-AIALAHDFGHP------PFGHV-----GEDVLQELLSSYG 129 +AR+ + LR+D L E A+ALA G P F L LL+ G Sbjct: 122 LARATGQDLRLDPALAEFALALAEAVGDPPLRPPGLFAPPVPVPADAPALDRLLALLG 179 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.325 0.140 0.415 Gapped Lambda K H 0.267 0.0769 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,066,420 Number of extensions: 478183 Number of successful extensions: 1319 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1297 Number of HSP's successfully gapped: 49 Length of query: 410 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 314 Effective length of database: 3,920,105 Effective search space: 1230912970 Effective search space used: 1230912970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 58 (26.0 bits)