RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate
triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus
str. psy62]
(410 letters)
>gnl|CDD|179272 PRK01286, PRK01286, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 336
Score = 425 bits (1095), Expect = e-119
Identities = 167/380 (43%), Positives = 224/380 (58%), Gaps = 56/380 (14%)
Query: 17 YAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLM 76
YAA S GR+ PE+ R+EFQRDRDR+IH+ AFRRLK KTQVF + + DHYRTRL
Sbjct: 6 YAALSANSRGRLRPEEPCPIRTEFQRDRDRIIHSKAFRRLKHKTQVFINPEGDHYRTRLT 65
Query: 77 HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136
HT+EV+QIAR++ARALR++EDL EAIAL HD GH PFGH GED L EL+ YGGF+HN Q
Sbjct: 66 HTLEVAQIARTIARALRLNEDLTEAIALGHDLGHTPFGHAGEDALNELMKEYGGFEHNEQ 125
Query: 137 SFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLS 196
S R+V +LE Y DG+NLTWE EG++ H+GP
Sbjct: 126 SLRVVDKLEKRY---DGLNLTWEVREGILKHSGPRNAP---------------------- 160
Query: 197 LANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLD 256
L A+LEGQ+ +AD+IAY+ HDIDDG+RAGL+T++ L E D
Sbjct: 161 LGTAATLEGQIVRLADEIAYNNHDIDDGIRAGLITLEDLPE------------------D 202
Query: 257 DKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEI 316
+RL+ E RR+I +V D+I +Q+ +A ++ FS+E+ KE+
Sbjct: 203 VRRLLGETHRRRINTLVVDLIKNTQRNLAEGAAAP---------PLVSFSEEVAEAMKEL 253
Query: 317 KSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHV 376
+ L + VYRHP + + ++++LF YM DP + EY+ + R V
Sbjct: 254 RRFLFENVYRHPKVKREREKAKRIVQDLFEYYMEDPELLPP----EYQNIAEEEGLERAV 309
Query: 377 GDYLAGMTDSYAIREHHILF 396
DY+AGMTD YA+RE+ LF
Sbjct: 310 ADYIAGMTDRYALREYRRLF 329
>gnl|CDD|162314 TIGR01353, dGTP_triPase, deoxyguanosinetriphosphate
triphosphohydrolase, putative. dGTP triphosphohydrolase
(dgt) releases inorganic triphosphate, an unusual
activity reaction product, from GTP. Its activity has
been called limited to the Enterobacteriaceae, although
homologous sequences are detected elsewhere. This
finding casts doubt on whether the activity is shared in
other species. In several of these other species, the
homologous gene is found in an apparent operon with
dnaG, the DNA primase gene. The enzyme from E. coli was
shown to bind coopertatively to single stranded DNA. The
biological role of dgt is unknown.
Length = 381
Score = 293 bits (751), Expect = 7e-80
Identities = 135/386 (34%), Positives = 190/386 (49%), Gaps = 29/386 (7%)
Query: 36 TRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARAL--- 92
R+ F+RD DR+IH++AFRRL+DKTQVF + D RTRL H++EV+Q+ RS+A +
Sbjct: 1 ERTPFERDYDRIIHSSAFRRLQDKTQVFPLAENDFVRTRLTHSLEVAQVGRSIANLIGLR 60
Query: 93 --------RIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG-GFDHNIQSFRIVTE 143
E L E LAHD G+PPFGH GE L + + YG GF+ N Q+FRI+T
Sbjct: 61 YDLELEELGPFERLAETACLAHDIGNPPFGHAGERALNDWMREYGPGFEGNAQTFRILTT 120
Query: 144 LECSYADFDGINLTWETLEGLIGHNGPI-----LPQDLDKPRIIPRIFSDYYH--IHGLS 196
LE G+NLTW TL G++ + P L+K + I + L
Sbjct: 121 LEKRRRAKGGLNLTWRTLAGILKYPRPSSEDAFKGGYLNKKKGIYDSELAVFDRVAELLG 180
Query: 197 LANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLY--GH 254
L + S Q+ ADDIAY HD++D ++ GLLT D L+ L A +L
Sbjct: 181 LTWYRSPLAQLMEAADDIAYTVHDLEDAIKLGLLTFDDLQH---LLLIQAGFEELGSEMT 237
Query: 255 LDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSA-GYRIIDFSDEMTLVD 313
+E +R ++ D+I K H + + + +++FS + +
Sbjct: 238 DLSISAENEQIRSLRGKLITDLIESVAKAEFS--SHLVAILIGTFHHTLVEFSPRLAELL 295
Query: 314 KEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKM-RGCNQLEYERDMTD-SI 371
+ +K L K VYRHP + Q +I LF A+M D R D
Sbjct: 296 EALKKFLRKRVYRHPDVERIEYQGEQIITGLFDAFMPDLPPRLLPPELRSKLRKAEDNYY 355
Query: 372 KARHVGDYLAGMTDSYAIREHHILFG 397
KAR V DY+AGMTD YA+ E+ LFG
Sbjct: 356 KARVVCDYIAGMTDRYALEEYRRLFG 381
>gnl|CDD|180010 PRK05318, PRK05318, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 432
Score = 182 bits (464), Expect = 1e-46
Identities = 126/442 (28%), Positives = 191/442 (43%), Gaps = 113/442 (25%)
Query: 37 RSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRI-- 94
RS +QRDR R++H+ AFRRL+ KTQV + D YRTRL H++EV+QI + L+
Sbjct: 22 RSPYQRDRARILHSAAFRRLQAKTQVLGVGENDFYRTRLTHSLEVAQIGTGIVAQLKKEK 81
Query: 95 ---------DEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145
+ L+E++ LAHD GHPPFGH GE L ++ +GGF+ N Q+FRI+T+LE
Sbjct: 82 QPELKPLLPSDSLIESLCLAHDIGHPPFGHGGEVALNYMMRDHGGFEGNGQTFRILTKLE 141
Query: 146 CSYADFDGINLTWETLEGLIGHNGPI-------LPQDLDKPRIIPR--------IFSDYY 190
Y + G+NLT TL G++ + P D+ R + IF D
Sbjct: 142 -PYTEHFGMNLTRRTLLGILKYPALYSELVAQYPPPDVANHRQLKASDWKPPKGIFDDDQ 200
Query: 191 HI----------------------------HGLSLANFASLEGQVAAIADDIAYDAHDID 222
I H + + SL+ + +ADDIAY HD++
Sbjct: 201 DIFDWVLEPLSENDRALFQSLRPEPDSPKEHLKTR--YKSLDCSIMELADDIAYGVHDLE 258
Query: 223 DGVRAGLLTVDMLKEI----------SFLEKHIASLHD-LYGHLDDKRLVHELVRRQITA 271
D + GL+T +E +LE+ I ++ + L+ R + I
Sbjct: 259 DAIVLGLVTRSQWQEDVAPQLAQCGDPWLEEEIETIGEKLFSGEHHLR------KDAIGT 312
Query: 272 MVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSD-----------EMTLVDKEIKSML 320
+V IT +K + +F + E + +K +
Sbjct: 313 LVNYFITS-----IRIKENE------------EFEEPLLRYNAALEPEFAAALEVLKQFV 355
Query: 321 VKYVYRHPSIMTCCNQI-----ANVIRNLFSAYMSDP-RKMRGCNQLEYERDMTDSIKAR 374
KYV R P + Q ++ LF A SDP R + Q + + + R
Sbjct: 356 YKYVIRKPEV-----QRLEYKGQQIVMELFEALSSDPERLLPRNTQERWRKAEDEENSMR 410
Query: 375 HVGDYLAGMTDSYAIREHHILF 396
+ DY++GMTD YA R + LF
Sbjct: 411 VICDYISGMTDEYAYRLYQQLF 432
>gnl|CDD|179526 PRK03007, PRK03007, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 428
Score = 169 bits (431), Expect = 9e-43
Identities = 89/221 (40%), Positives = 118/221 (53%), Gaps = 23/221 (10%)
Query: 27 RMYPE--KRSL------TRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHT 78
R PE K + R++F RDR R++H+ A RRL DKTQV R+ D RTRL H+
Sbjct: 16 RRVPEPPKSAGLPTEGQHRTDFARDRARVLHSAALRRLADKTQVVGPREGDTPRTRLTHS 75
Query: 79 IEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSF 138
+EV+QI R +A L D DLV+ LAHD GHPP+GH GE L E+ + GGF+ N Q+
Sbjct: 76 LEVAQIGRGIAAGLGCDPDLVDLAGLAHDIGHPPYGHNGERALDEVAADCGGFEGNAQTL 135
Query: 139 RIVTELECSYADFD----GINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYH--- 191
RI+T LE D D G+NLT +L+ + P + R F Y
Sbjct: 136 RILTRLEPKVLDPDGRSAGLNLTRASLDAACKY--PWTRG--EADGSPRRKFGFYDDDRE 191
Query: 192 ----IHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAG 228
+ + A LE QV ADD+AY HD++DGV +G
Sbjct: 192 VFAWVRQGAPAGRPCLEAQVMDWADDVAYSVHDVEDGVVSG 232
>gnl|CDD|179219 PRK01096, PRK01096, deoxyguanosinetriphosphate
triphosphohydrolase-like protein; Provisional.
Length = 440
Score = 145 bits (368), Expect = 2e-35
Identities = 114/449 (25%), Positives = 173/449 (38%), Gaps = 92/449 (20%)
Query: 22 TQSLG-RMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIE 80
+ LG + K L RS F +D DR+I + +FRRL+ KTQV + DH TRL H++E
Sbjct: 9 RERLGKKGKTSKDELGRSPFHKDYDRIIFSGSFRRLQRKTQVHPLAKNDHIHTRLTHSLE 68
Query: 81 VSQIARSLARALRIDE-----------------DLVEAIALAHDFGHPPFGHVGEDVLQE 123
VS + RSL +R+ E +V++ LAHD G+PPFGH GED ++E
Sbjct: 69 VSCVGRSL--GMRVGETLKEEKLPDWISPADIGAIVQSACLAHDIGNPPFGHFGEDAIRE 126
Query: 124 LLSSYGG-----------------FDHNIQSFRIVTELECSYADFD-GINLTWETLEGLI 165
G F+ N Q FR++T+LE Y D G+ LT+ TL I
Sbjct: 127 WFQDAAGRGFLDDLSPQERADFLNFEGNAQGFRVLTKLE--YHQDDGGMRLTYATLGTYI 184
Query: 166 GHNGPILPQDLDKPRIIPRIFSDYYH--------IHGLSLANFASLEGQVAA-------- 209
+ P + +K +I + F Y L L L Q
Sbjct: 185 KY--PWSSRHANKQQIKKKKFGCYQSELPLFEQIAEALGLPQ---LGEQRWCRHPLTYLL 239
Query: 210 -IADDIAYDAHDIDDGVRAGLLTVDMLKEI-SFLEKHIASLHDLYGHLDDKRLVHELVRR 267
ADDI Y D++DG+ GLL ++ + L L ++ + L +
Sbjct: 240 EAADDICYALIDLEDGLEMGLLNYQEVEALFLELIGDKEKYRQLGPQDSRRQKLARLRGK 299
Query: 268 QITAMVEDVITV---SQKRIAH--LKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVK 322
I +V V + I L I R + ++ K + +
Sbjct: 300 AIGRLVNAVAEAFVENYDAILAGTLPGDLIEHCDPDAKRCV----------QQAKDLARE 349
Query: 323 YVYRHPSIM-----------TCCNQIANVIRNLFSAYMSDPRKMRGCNQL-EYERDMTDS 370
+++H + + S + R + L + D T
Sbjct: 350 KIFQHKRKVELEIGAYTILEILLDAFVPAALYYDSGTTPSFKDKRLLDLLGDNAPDPTMK 409
Query: 371 IKARH--VGDYLAGMTDSYAIREHHILFG 397
+ R V D+++GMTDSYA L G
Sbjct: 410 LYLRLLRVLDFISGMTDSYAKELAQELTG 438
>gnl|CDD|179894 PRK04926, dgt, deoxyguanosinetriphosphate triphosphohydrolase;
Provisional.
Length = 503
Score = 99.6 bits (249), Expect = 1e-21
Identities = 113/519 (21%), Positives = 176/519 (33%), Gaps = 179/519 (34%)
Query: 27 RMYP------EKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIE 80
R Y + + R F+ DR R+I++ A RRL+ KTQVF + R+RL H++E
Sbjct: 14 RRYRSPQGVKTEHEILR-IFESDRGRIINSAAIRRLQQKTQVFPLERNAAVRSRLTHSLE 72
Query: 81 VSQIARSLAR-------------ALRID------EDLVEAIALAHDFGHPPFGHVGEDVL 121
V Q+ R +A+ A +D E +VE L HD G+PPFGH GE +
Sbjct: 73 VQQVGRYIAKEILSRLKEQKLLEAYGLDELTGPFESIVEMACLMHDIGNPPFGHFGEAAI 132
Query: 122 -----QELLSSYGG-----------------------------------FDHNIQSFRIV 141
Q L F+ N Q R+V
Sbjct: 133 NDWFRQRLDPDAESQPLTDDRCSVAALRLRDGEEPLNELRRKIRQDLCHFEGNAQGIRLV 192
Query: 142 TELECSYADFDGINLTWETLEGLI------GHNGPILPQDLD----KPRIIPRIFSDYYH 191
L +NLT+ + ++ GP P KP YY
Sbjct: 193 HTLL-------RLNLTYAQVACILKYTRPAWWRGPT-PASHHYLMKKP--------GYY- 235
Query: 192 IHGLSLANF-ASL-------EGQ---VAAI---ADDIAYDAHDIDDGVRAGLLTVDMLKE 237
LS + A L + I ADDI+Y D++D V + +V+ L
Sbjct: 236 ---LSEEAYVARLRKELNLAPYSRFPLTYIMEAADDISYCIADLEDAVEKRIFSVEQL-- 290
Query: 238 ISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRI--AHLKPHAIHDI 295
LH+ +G + L +V + ++ S + +L+ + ++ +
Sbjct: 291 -------YHHLHEAWGEHEKGDLFSLVVENAWEKSRANSLSRSSEDQFFMYLRVNTLNKL 343
Query: 296 -RSAGYRIIDF-----------------SDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQI 337
A R ID S L+ K K++ K+V+ HP + Q
Sbjct: 344 VPYAAQRFIDNLPAIFAGTFNQALLEDASPASRLL-KTFKNVARKHVFSHPEVEQLELQG 402
Query: 338 ANVIRNL--------------FSAYMSDPRK------------------------MRGCN 359
VI L F+ + R +
Sbjct: 403 YRVISGLLDIYSPLLALPLEDFTELVEKERHKRYPIETRLFHKLSTRHRLAYVEAVSKLP 462
Query: 360 QLEYERDMTD-SIKARHVGDYLAGMTDSYAIREHHILFG 397
E + + +AR + DY++GMTD YA E+ L
Sbjct: 463 SDSPEFPLWEYYYRARLIQDYISGMTDLYAWDEYRRLMA 501
>gnl|CDD|128747 smart00471, HDc, Metal dependent phosphohydrolases with conserved
'HD' motif. Includes eukaryotic cyclic nucleotide
phosphodiesterases (PDEc). This profile/HMM does not
detect HD homologues in bacterial glycine aminoacyl-tRNA
synthetases (beta subunit).
Length = 124
Score = 45.4 bits (107), Expect = 3e-05
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 72 RTRLMHTIEVSQIARSLARALR-IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGG 130
H++ V+Q+A +LA L +D +L+ AL HD G P L
Sbjct: 3 YHVFEHSLRVAQLAAALAEELGLLDIELLLLAALLHDIGKPGTPDSFLVKTSVL------ 56
Query: 131 FDHNIQSFRIVTELEC 146
DH+ I+ E E
Sbjct: 57 EDHHFIGAEILLEEEE 72
>gnl|CDD|161799 TIGR00277, HDIG, uncharacterized domain HDIG. This domain is found
in a few known nucleotidyltransferes and in a large
number of uncharacterized proteins. It contains four
widely separated His residues, the second of which is
part of an invariant dipeptide His-Asp in a region
matched approximately by the motif HDIG.
Length = 80
Score = 37.3 bits (87), Expect = 0.008
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 77 HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHP 111
H++EV+++A +LAR L +D +L AL HD G P
Sbjct: 8 HSLEVAKLAEALARELGLDVELARRGALLHDIGKP 42
>gnl|CDD|132362 TIGR03319, YmdA_YtgF, conserved hypothetical protein YmdA/YtgF.
Length = 514
Score = 33.4 bits (77), Expect = 0.13
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 68 RDHYRTR-----LMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109
R +RT L H+IEV+ +A +A L D L + L HD G
Sbjct: 319 RLKFRTSYGQNVLQHSIEVAHLAGIMAAELGEDVKLAKRAGLLHDIG 365
>gnl|CDD|179589 PRK03525, PRK03525, crotonobetainyl-CoA:carnitine CoA-transferase;
Provisional.
Length = 405
Score = 31.6 bits (72), Expect = 0.33
Identities = 40/167 (23%), Positives = 65/167 (38%), Gaps = 48/167 (28%)
Query: 96 EDLVEAIALAHDFGHP--------------PFGHVGEDVLQELLSSYGGFD-------HN 134
++ + I LAH G P P+G + E+ L L+++ + N
Sbjct: 257 KECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLAAHTIAEVEARFAELN 316
Query: 135 IQSFRIVT--ELECS--YADFDGINLTWETLEGLIGHNGPILPQDLDKP----RIIPRIF 186
I +++T ELE + Y + I W+T++G I+P+ + P R +P
Sbjct: 317 IACAKVLTIPELESNPQYVARESI-TQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPS-- 373
Query: 187 SDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVD 233
HG AAI +I Y DI + V GL V+
Sbjct: 374 ------HG----------MDTAAILKNIGYSEEDIQELVAKGLAKVE 404
>gnl|CDD|183692 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 31.7 bits (73), Expect = 0.38
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 70 HYRTR-----LMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109
YRT L H+IEV+ +A +A L +D L + L HD G
Sbjct: 327 KYRTSYGQNVLQHSIEVAHLAGLMAAELGLDVKLAKRAGLLHDIG 371
>gnl|CDD|185647 PTZ00468, PTZ00468, phosphofructokinase family protein;
Provisional.
Length = 1328
Score = 31.5 bits (71), Expect = 0.42
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 267 RQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYR 326
R + ++V++++ + KR + K H I + +I+F E + KE+ +L+K R
Sbjct: 312 RSLMSIVDEIVEMILKRDSLGKKHGIVLLPEG---LIEFIPEFETLIKELNLILLKTNDR 368
Query: 327 HPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERD 366
I + ++ ++ LF SD + NQL ERD
Sbjct: 369 KQII----DSLSQEMKTLFLELPSDVQ-----NQLLLERD 399
>gnl|CDD|129396 TIGR00295, TIGR00295, conserved hypothetical protein TIGR00295.
This set of orthologs is narrowly defined, comprising
proteins found in three Archaea but not in Pyrococcus
horikoshii. The closest homologs are other archaeal
proteins that appear to be represent distinct
orthologous clusters.
Length = 164
Score = 29.8 bits (67), Expect = 1.2
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 20/73 (27%)
Query: 77 HTIEVSQIARSLARALR-----IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGF 131
H + V+++A LA +R +D DLV AL HD G + GF
Sbjct: 17 HCLAVARVAMELAENIRKKGHEVDMDLVLKGALLHDIGR---------------ARTHGF 61
Query: 132 DHNIQSFRIVTEL 144
+H ++ I+ +
Sbjct: 62 EHFVKGAEILRKE 74
>gnl|CDD|162980 TIGR02706, P_butyryltrans, phosphate butyryltransferase. Members
of this family are phosphate butyryltransferase, also
called phosphotransbutyrylase. In general, this enzyme
is found in butyrate-producing anaerobic bacteria,
encoded next to the gene for butyrate kinase. Together,
these two enzymes represent what may be the less common
of two pathways for butyrate production from
butyryl-CoA. The alternative is transfer of the CoA
group to acetate by butyryl-CoA:acetate CoA transferase.
Cutoffs for this model are set such that the homolog
from Thermotoga maritima, whose activity on butyryl-CoA
is only 30 % of its activity with acetyl-CoA, scores in
the zone between trusted and noice cutoffs.
Length = 294
Score = 29.3 bits (66), Expect = 1.8
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 86 RSLARALRIDEDLVEAIALAHDFGHPPFGHVG-EDVLQELLSSYGGFDHNIQSFRIVTE 143
+++A A+ DE ++EA+ A + G VG E+ + E+ G N+ IV
Sbjct: 14 KTVAVAVAQDEPVLEAVKEAKEHGIARAILVGDEEKINEIAKKIGM---NLDDVEIVNA 69
>gnl|CDD|180860 PRK07152, nadD, putative nicotinate-nucleotide adenylyltransferase;
Validated.
Length = 342
Score = 28.8 bits (65), Expect = 3.1
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 74 RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109
R H + V+Q+A LA+ +D L HD
Sbjct: 197 RYKHCLRVAQLAAELAKKNNLDPKKAYYAGLYHDIT 232
>gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase;
Provisional.
Length = 743
Score = 28.2 bits (63), Expect = 3.5
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 265 VRRQITAMVED---VITVSQKRIAHLK 288
VRR + AMVED V+ +RIAHL+
Sbjct: 135 VRRMLLAMVEDFRCVVIKLAERIAHLR 161
>gnl|CDD|183693 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 28.1 bits (63), Expect = 3.7
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 68 RDHYRTR-----LMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109
R ++RT L H++EV+ +A +A + +D L + L HD G
Sbjct: 313 RLYFRTSYGQNVLSHSLEVAHLAGIIAAEIGLDPALAKRAGLLHDIG 359
>gnl|CDD|181146 PRK07851, PRK07851, acetyl-CoA acetyltransferase; Provisional.
Length = 406
Score = 27.7 bits (62), Expect = 5.3
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 9/43 (20%)
Query: 89 ARALRIDEDLVE----AIALAHDFGHPPFGHVGEDVLQELLSS 127
AR L IDED + AIAL H PFG G + LL++
Sbjct: 340 ARELGIDEDKLNVSGGAIALGH-----PFGMTGARITTTLLNN 377
>gnl|CDD|148253 pfam06534, RGM_C, Repulsive guidance molecule (RGM) C-terminus.
This family consists of several mammalian and one bird
sequence from Gallus gallus (Chicken). This family
represents the C-terminal region of several sequences
but in others it represents the full protein. All of the
mammalian proteins are hypothetical and have no known
function but a member from chicken is annotated as being
a repulsive guidance molecule (RGM). RGM is a GPI-linked
axon guidance molecule of the retinotectal system. RGM
is repulsive for a subset of axons, those from the
temporal half of the retina. Temporal retinal axons
invade the anterior optic tectum in a superficial layer,
and encounter RGM expressed in a gradient with
increasing concentration along the anterior-posterior
axis. Temporal axons are able to receive
posterior-dependent information by sensing gradients or
concentrations of guidance cues. Thus, RGM is likely to
provide positional information for temporal axons
invading the optic tectum in the stratum opticum.
Length = 213
Score = 27.8 bits (62), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 78 TIEVSQIARSLARALRIDEDLVEA 101
TI V Q+ R L A+R+ E++ A
Sbjct: 57 TIIVRQVGRYLTFAVRMPEEVANA 80
>gnl|CDD|184799 PRK14713, PRK14713, multifunctional hydroxymethylpyrimidine
phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine
hydrolase; Provisional.
Length = 530
Score = 27.8 bits (62), Expect = 5.4
Identities = 12/44 (27%), Positives = 25/44 (56%), Gaps = 8/44 (18%)
Query: 203 LEGQVAAIADDIAYDAHDIDDGVRAGLL-TVDMLKEI-SFLEKH 244
L Q+ A++DD+ DA V+ G+L +++ + ++L +H
Sbjct: 86 LRAQLDAVSDDVTVDA------VKIGMLGDAEVIDAVRTWLAEH 123
>gnl|CDD|183285 PRK11712, PRK11712, ribonuclease G; Provisional.
Length = 489
Score = 27.3 bits (61), Expect = 8.5
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 16/84 (19%)
Query: 230 LTVDMLKEISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKP 289
LT + LKE F ++I + D H ++ + +L VE+ I + +R LK
Sbjct: 237 LTYEELKE--FTSEYIPEMTDKLEHYSGRQPIFDLYD------VENEIQRALERKVELK- 287
Query: 290 HAIHDIRSAGYRIIDFSDEMTLVD 313
S GY IID ++ MT VD
Sbjct: 288 -------SGGYLIIDQTEAMTTVD 304
>gnl|CDD|149653 pfam08668, HDOD, HDOD domain.
Length = 196
Score = 27.2 bits (61), Expect = 8.7
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 77 HTIEVSQIARSLARALR-IDEDLVEAIALAHDFGHPPFGHVGEDVLQELL 125
H++ + AR LAR L D + L HD G + D +E+L
Sbjct: 98 HSLACALAARLLARRLGLDDPEEAFTAGLLHDIGKLILLSLLPDEYEEIL 147
>gnl|CDD|161895 TIGR00472, pheT_bact, phenylalanyl-tRNA synthetase, beta subunit,
non-spirochete bacterial. Every known example of the
phenylalanyl-tRNA synthetase, except the monomeric form
of mitochondrial, is an alpha 2 beta 2 heterotetramer.
The beta subunits break into two subfamilies that are
considerably different in sequence, length, and pattern
of gaps. This model represents the subfamily that
includes the beta subunit from Bacteria other than
spirochetes, as well as a chloroplast-encoded form from
Porphyra purpurea. The chloroplast-derived sequence is
considerably shorter at the amino end, however.
Length = 798
Score = 27.3 bits (61), Expect = 8.7
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 13/91 (14%)
Query: 265 VRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIID-FSDEMTLVDKEIKSMLVKY 323
V R I+ +V + + I +K + + + D + + + + KS+ ++
Sbjct: 710 VTRDISFLVPKDVPA-NEIIKLIKKSGLELLEE--VELFDVYEGKN--IGEGKKSLALRL 764
Query: 324 VYRHPS-------IMTCCNQIANVIRNLFSA 347
V R I ++ N+++ A
Sbjct: 765 VLRDKERTLTDEEINKIVEKVLNLLKEKLGA 795
>gnl|CDD|163130 TIGR03086, TIGR03086, conserved hypothetical protein TIGR03086.
This family, like Pfam family pfam07398 and TIGRFAMs
family TIGR030834, belongs to the larger set of probable
enzymes defined in family TIGR03083. Members are found
primarily in the Actinobacteria (Mycobacterium,
Streptomyces, etc.). The family is uncharacterized.
Length = 180
Score = 27.0 bits (60), Expect = 9.5
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 84 IARSLARALRIDEDLVE-AIALAHDFGHP------PFGHV-----GEDVLQELLSSYG 129
+AR+ + LR+D L E A+ALA G P F L LL+ G
Sbjct: 122 LARATGQDLRLDPALAEFALALAEAVGDPPLRPPGLFAPPVPVPADAPALDRLLALLG 179
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.325 0.140 0.415
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 7,066,420
Number of extensions: 478183
Number of successful extensions: 1319
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1297
Number of HSP's successfully gapped: 49
Length of query: 410
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 314
Effective length of database: 3,920,105
Effective search space: 1230912970
Effective search space used: 1230912970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)