RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] (410 letters) >2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily; 2.20A {Thermus thermophilus HB8} (A:27-308) Length = 282 Score = 158 bits (400), Expect = 1e-39 Identities = 122/300 (40%), Positives = 166/300 (55%), Gaps = 19/300 (6%) Query: 26 GRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIA 85 GR +PE SL R+ +Q+DRDR++HTTAFRRL+ KTQV D+YRTRL HT+EV+Q++ Sbjct: 2 GRAHPEPESLYRTPYQKDRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVS 61 Query: 86 RSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145 RS+ARAL ++EDL EAIAL+HD GHPPFGH GE VL L +GGF+HN Q+ RI+T LE Sbjct: 62 RSIARALGLNEDLTEAIALSHDLGHPPFGHTGEHVLNALXQDHGGFEHNAQALRILTHLE 121 Query: 146 CSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEG 205 Y F G+NLT+E LEG+ H Y +LE Sbjct: 122 VRYPGFRGLNLTYEVLEGIATHEAA------------------YSPGFKPLYEGQGTLEA 163 Query: 206 QVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLDDKRLVHELV 265 QV ++D IAY AHD+DDG RAGLL + LKE+ L+ L + LV Sbjct: 164 QVVDLSDAIAYAAHDLDDGFRAGLLHPEELKEVELLQALALEEGLDLLRLPELDR-RVLV 222 Query: 266 RRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVY 325 R+ + + I + +R+ + +R R+ +E K +K+ L + Y Sbjct: 223 RQLLGYFITAAIEATHRRVEEAGVQSAEAVRRHPSRLAALGEEAEKALKALKAFLXERFY 282 >3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, PSI-2, protein structure initiative; HET: DGT DTP; 2.40A {Enterococcus faecalis V583} PDB: 2o6i_A* (A:1-247) Length = 247 Score = 151 bits (381), Expect = 2e-37 Identities = 30/246 (12%), Positives = 63/246 (25%), Gaps = 28/246 (11%) Query: 1 MIVVRKLGFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKT 60 + L F + + +++ + + +I++ +RL+ Sbjct: 12 DLGTENLYFQSNAMTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIK 71 Query: 61 QVFF--HRQRDHYRTRLMHTIEVSQIARSLARALR---------------IDEDLVEAIA 103 Q+ +R H++ V +I R + + + + A Sbjct: 72 QLGTSSFTFHGAEHSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAA 131 Query: 104 LAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEG 163 L HD GH P+ H E + + + L + + Sbjct: 132 LLHDVGHGPYSHTFEHIFDTNHEAITVQIITSPETEVYQILN-----RVSADFPEKVASV 186 Query: 164 LIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDD 223 + + +I DY L A F E I Sbjct: 187 ITKQYPNPQVVQMISSQIDADRM-DYL----LRDAYFTGTEYGTFD-LTRILRVIRPYKG 240 Query: 224 GVRAGL 229 G+ + Sbjct: 241 GIAFAM 246 >2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site and active site being FAR from EACH other, structural genomics; HET: GDP; 2.00A {Aquifex aeolicus} (A:1-221) Length = 221 Score = 142 bits (359), Expect = 6e-35 Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 10/209 (4%) Query: 37 RSEFQRDRDRMIHTTAFRRLKDKTQVF--FHRQRDHYRTRLMHTIEVSQIARSLARALRI 94 R+I + F+RL+ Q+ + TR H++ V I + +L++ Sbjct: 12 FVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKV 71 Query: 95 D-EDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDG 153 ++LV+ L HD GHPPF H E +L S + I+ I L+ Y+ D Sbjct: 72 KEKELVKLAGLLHDLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDI 131 Query: 154 INLTWETLEGLIGHNGPILPQDLDKPRIIPR----IFSDYYHIHGLSLANFASLEGQVAA 209 L TL +L + + R Y+ ++ L + Sbjct: 132 ERLVRITLGKPEDEEEKLLSEIITGEFGSDRMDYLRRDAYFCGVSYGFFDYDRLISTLRV 191 Query: 210 IADDIAY---DAHDIDDGVRAGLLTVDML 235 + + +++ + + + Sbjct: 192 YENKVVVDESGLRALENFLISRYFMYVQV 220 >3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217} (A:1-119,A:180-360) Length = 300 Score = 125 bits (315), Expect = 1e-29 Identities = 63/347 (18%), Positives = 108/347 (31%), Gaps = 92/347 (26%) Query: 17 YAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLM 76 + + ++ TR F+ D DR+I + FR L+DKTQV + D TRL Sbjct: 8 LSLKRQGDTAKRLRIEQDDTRLGFEVDYDRIIFSAPFRSLQDKTQVIPLSKTDFVHTRLT 67 Query: 77 HTIEVSQIARSLARALRI-------------------DEDLVEAIALAHDFGHPPFGHVG 117 H++EVS + RSL R + +V A ALAHD G Sbjct: 68 HSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIG-------- 119 Query: 118 EDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLD 177 L++ TL + + LP Sbjct: 120 -------------------------------------RLSYATLGAFMKYPKESLPHKPS 142 Query: 178 KPRIIPR--IFSDYYHI--------------HGLSLANFASLEGQVAAIADDIAYDAHDI 221 + F + ++ + ADDI Y D Sbjct: 143 DHIADKKYGFFQSERALFEDVAQELGLLKRSTTDDVSWSRHPLAYLVEAADDICYTIIDF 202 Query: 222 DDGVRAGLLTVDMLKEI-SFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVS 280 +DG+ GL+ + E L + + V L I ++ + + Sbjct: 203 EDGINLGLIPEEYALEYMVKLVGQTIDRNKYNALQETSDRVSYLRALAIGTLINESVDTF 262 Query: 281 QKRIAHLKPHAIHDIRSAGYR--IIDFSDEMTLVDKEIKSMLVKYVY 325 K +I + + +ID S+ + +I ++ ++ +Y Sbjct: 263 MKY--------EEEILAGTFDQSLIDKSNYQAQI-TDIINLSIERIY 300 >2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} (A:1-190) Length = 190 Score = 119 bits (298), Expect = 9e-28 Identities = 26/213 (12%), Positives = 53/213 (24%), Gaps = 37/213 (17%) Query: 24 SLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFF--HRQRDHYRTRLMHTIEV 81 ++ + + + ++ +RL QV TR H++ Sbjct: 4 YERKIINDPVFGFINIPKGLLYDIVRHPLLQRLTRIKQVGLSSVVYPGAQHTRFQHSLGA 63 Query: 82 SQIARSLARALR--------IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDH 133 + L + + V+A L HD GH PF HV ED + + G H Sbjct: 64 FYLXSEAITQLTSKGNFIFDSEAEAVQAAILLHDIGHGPFSHVLEDTIVQ------GVSH 117 Query: 134 NIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIH 193 S + ++L + + + Sbjct: 118 EEISLXLXERXNKEXNGQ--LSLAIQIFKDEYPKRFLH-------------------QLV 156 Query: 194 GLSLANFASLEGQVAAIADDIAYDAHDIDDGVR 226 L + + + ++ Sbjct: 157 SGQLDXDRLDYLRRDSFYTGVTEGNIGSARIIK 189 >2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} (A:) Length = 231 Score = 105 bits (261), Expect = 2e-23 Identities = 34/224 (15%), Positives = 61/224 (27%), Gaps = 8/224 (3%) Query: 44 RDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIA 103 D I T ++ DH H V+++AR LA+ + +L A A Sbjct: 3 GDPXITETQLTAIQTYALQKLAH--DHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAA 60 Query: 104 LAHDFGHPPFGHVGEDVLQELLSSYGGFDHNI-QSFRIVTELECSYADFDGINLTWETLE 162 HD Q+L+ + I ++ +LE Sbjct: 61 WLHDVIDDKLXANPAKAHQDLIVQLNAQNVTADDQTAIFAIIDHXSFSKSFNGPQKLSLE 120 Query: 163 GLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDID 222 G + + LD I + YY H ++ + + + Sbjct: 121 GQVVQDADR----LDAIGAIGIARALYYSGHVGEKIYDPAIAPREHXTREQYRHQPGTAI 176 Query: 223 DGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLDDKRLVHELVR 266 + L + L K +A+ H + E Sbjct: 177 NHFYEKLFKLAALXNTD-TAKALAAHRTAVXHEFVDQFKAEWTA 219 >2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase; deoxyguanosinetriphosphate triphsphohydrolase; 2.35A {Pseudomonas syringae PV} (A:1-113,A:229-354) Length = 239 Score = 97.7 bits (243), Expect = 2e-21 Identities = 38/113 (33%), Positives = 51/113 (45%), Gaps = 14/113 (12%) Query: 17 YAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLM 76 + LG+ L RS F +D DR+I + AFRRL KTQV DH TRL Sbjct: 6 QTLLNRERLGKTLHSPEELGRSPFHKDHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLT 65 Query: 77 HTIEVSQIARSLARALRI--------------DEDLVEAIALAHDFGHPPFGH 115 H++EVS + RSL + +V++ LAHD G+ H Sbjct: 66 HSLEVSCVGRSLGXRVGETLRAALPDWCDPSDLGXVVQSACLAHDIGNRWARH 118 Score = 87.7 bits (217), Expect = 3e-18 Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 8/136 (5%) Query: 193 HGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEI---SFLEKHIASLH 249 H + + ADDI Y D++DG+ LL ++ + + + Sbjct: 109 HDIGNRWARHPLVYLXEAADDICYALIDLEDGLEXDLLDYAEVESLLLGLVGDDLPETYR 168 Query: 250 DLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEM 309 L +R + L + I + ++ A+ G + Sbjct: 169 QLGPGDSRRRKLAILRGKAIEHLTNAAARAFVEQQD-----ALLAGTLPGDLVEHXHGPA 223 Query: 310 TLVDKEIKSMLVKYVY 325 K K ++ Sbjct: 224 KRCVLNAKDXARKKIF 239 >2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase; deoxyguanosinetriphosphate triphsphohydrolase; 2.35A {Pseudomonas syringae PV} (A:114-228,A:355-451) Length = 212 Score = 86.5 bits (214), Expect = 6e-18 Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 24/122 (19%) Query: 111 PPFGHVGEDVLQELLSSY-----------------GGFDHNIQSFRIVTELECSYADFDG 153 PPFGH GED ++ + F+ N Q FR++T+LE D G Sbjct: 1 PPFGHSGEDAIRNWFNQAAGRGWLDAXSETERNDFLNFEGNAQGFRVLTQLEYHQFDG-G 59 Query: 154 INLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADD 213 LT+ TL + + D F Y L + G++ + Sbjct: 60 TRLTYATLGTYLKYPWTARH--ADSLGYKKHKFGCYQ----SELPILEQIAGKLGLPQLE 113 Query: 214 IA 215 Sbjct: 114 EQ 115 Score = 36.4 bits (84), Expect = 0.007 Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 14/86 (16%) Query: 326 RHPSIMTCCNQIANVIRNLFSAYMS------DPRKMRGCNQLEYER--------DMTDSI 371 + + L +A+ R ++ + Sbjct: 116 QDKRKTLHEIGAYTTLEILLNAFCGAAVEQFGGRTPSFKHRRILDLLGNSAPDPKAPLHA 175 Query: 372 KARHVGDYLAGMTDSYAIREHHILFG 397 D++AG TDSYA G Sbjct: 176 SFLRXIDFIAGXTDSYASEXAREXTG 201 >2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} (A:) Length = 220 Score = 73.8 bits (180), Expect = 4e-14 Identities = 24/227 (10%), Positives = 47/227 (20%), Gaps = 20/227 (8%) Query: 53 FRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPP 112 R + + + + D + HT V + A +A + D AL HD P Sbjct: 14 LREILNIVR-EAFKDYDDPAHDISHTFRVXENASEIASREKCDLQKAIIAALLHDIKRPH 72 Query: 113 FGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPIL 172 G D + G E + + H Sbjct: 73 EALTGVDHAESGAEYASGLLPTXGFDISF---------------VAEVSKAIRSHRYSGG 117 Query: 173 PQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTV 232 I + I A + + + +G Sbjct: 118 LTPTSLTGKILQDADRLDAIG----AVAIARVFSYSGKTGTPLHSLQFSPRSSYSGNSRS 173 Query: 233 DMLKEISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITV 279 + + K + V + + + + Sbjct: 174 SINHFHEKILKIRPETFWTETARKXAEDRYSFVVEFVQRFLAEWGQI 220 >2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily; 2.20A {Thermus thermophilus HB8} (A:309-376) Length = 68 Score = 70.5 bits (173), Expect = 4e-13 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%) Query: 326 RHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHVGDYLAGMTD 385 RHP ++ + V+ LF+AY P + E + + + R V DY+AG TD Sbjct: 1 RHPEVLRERRKAEAVLEGLFAAYTRYPELLPR----EVQAKIPEEGLERAVCDYIAGXTD 56 Query: 386 SYAIREHHILF 396 +A+ + L Sbjct: 57 RFALEAYRRLS 67 >2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Staphylococcus epidermidis atcc 12228} (A:1-128) Length = 128 Score = 66.7 bits (162), Expect = 5e-12 Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 9/125 (7%) Query: 42 RDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRI-DEDLVE 100 R ++ + + + D + H V A +A+ I D ++E Sbjct: 2 NSRXKIKKAYEYXKSFHQ--------HDTTGHDIAHVERVYNNACYIAKRENITDTLVIE 53 Query: 101 AIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWET 160 +L HD Q + S +++ ++ N + Sbjct: 54 LSSLLHDTVDSKLTDEILAYDQLKQFLSTLDLSSEISQQVLYIIKHXSYRAGKNNHVKLS 113 Query: 161 LEGLI 165 ++G I Sbjct: 114 IDGEI 118 >3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217} (A:120-179,A:361-444) Length = 144 Score = 66.0 bits (161), Expect = 9e-12 Identities = 8/80 (10%), Positives = 20/80 (25%), Gaps = 8/80 (10%) Query: 326 RHPSIMTCCNQIANVIRNLFSAYMSDPRKMR--------GCNQLEYERDMTDSIKARHVG 377 ++ ++ L A + + + Sbjct: 61 NSREVIEKEIAGYEILSTLLEARCRALDNNDTHYNQLIQQLLAPNDHSEKSLYENLIQIC 120 Query: 378 DYLAGMTDSYAIREHHILFG 397 ++ MTD A+R + + G Sbjct: 121 AEVSTMTDGKALRNYKKIKG 140 Score = 51.4 bits (123), Expect = 2e-07 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 19/62 (30%) Query: 111 PPFGHVGEDVLQELLSSY-----------------GGFDHNIQSFRIVTELECSYADFDG 153 PPFGH GE + E + F+ N F+++++ + G Sbjct: 2 PPFGHSGEKAIGEFFKNGYGKRYKDSLTAKEYQDLIKFEGNANGFKVLSQSK--PGAQGG 59 Query: 154 IN 155 +N Sbjct: 60 LN 61 >3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} (A:1-126) Length = 126 Score = 65.9 bits (160), Expect = 9e-12 Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 2/114 (1%) Query: 54 RRLKDKTQVFFHRQRDHYR--TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHP 111 + + + + +Q H V+ A+++ ++D +V+ AL HD Sbjct: 4 QAILQSAEAWVKKQLXDEYSGHDWYHIRRVTLXAKAIGEQEKVDVFVVQIAALFHDLIDD 63 Query: 112 PFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLI 165 E Q+L+ Q ++ + + G + T E + Sbjct: 64 KLVDDPETAKQQLIDWXEAAGVPSQKIDHTXDIINTISFKGGHGQSLATREAXV 117 >3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, structural genomics; 1.90A {Geobacter sulfurreducens} (A:1-25,A:111-305) Length = 220 Score = 63.3 bits (153), Expect = 5e-11 Identities = 27/223 (12%), Positives = 65/223 (29%), Gaps = 38/223 (17%) Query: 67 QRDHYR--TRLMHTIEVSQIARSLARALRI-DEDLVEAIALAHDFG----HPPFGHVGED 119 ++ T H++ V++IA+ +A + V L HD G + G Sbjct: 25 EKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQ 84 Query: 120 VLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKP 179 V+ + F + + E +A +L + ++ H+ Sbjct: 85 VVTLVDEEKITFGQAEERLFGTSHCEVGFALAKRWSLNEFICDTILYHHDI--------- 135 Query: 180 RIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEIS 239 ++ + A AD+ + G VD ++ + Sbjct: 136 ---------------EAVPYKQAAIVAXVAFADEYC----TLRRLGFEGHKPVDSVRTLL 176 Query: 240 FLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQK 282 S + L +L+ ++ + + ++ + Sbjct: 177 ENH---PSWGVIRRSLGGSDFDEKLIVAELDSSIVEIRAAVDE 216 >3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} (A:1-126) Length = 126 Score = 61.7 bits (149), Expect = 2e-10 Identities = 19/107 (17%), Positives = 37/107 (34%) Query: 59 KTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGE 118 T V ++D H V + A SL+ + ++E AL HD E Sbjct: 11 ITFVKHILEKDASGHDWYHIRRVHKXAISLSEQEGGNRFIIEXAALLHDVADEKLNESEE 70 Query: 119 DVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLI 165 +++ + + V + + + G E++EG + Sbjct: 71 AGXKKVSDWLEELHVEEEESKHVLHIIANXSYKGGHGGKVESIEGKL 117 >2ogi_A Hypothetical protein SAG1661; NP_688652.1, conserved hypothetical protein TIGR00488, structural genomics; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} (A:1-159) Length = 159 Score = 59.4 bits (143), Expect = 9e-10 Identities = 19/159 (11%), Positives = 35/159 (22%), Gaps = 30/159 (18%) Query: 74 RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDH 133 R H + V + A LA D++ AL HD+ ++ + Sbjct: 27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLKKW 86 Query: 134 NIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIH 193 + + D + L + H Sbjct: 87 GNNIWH--GLVGIYKIQEDLAIKDQDILAAIAKHTVGSAQ-------------------- 124 Query: 194 GLSLANFASLEGQVAAIADDI-AYDAHDIDDGVRAGLLT 231 S ++ +AD I + R Sbjct: 125 -------XSTLDKIVYVADYIEHNRDFPGVEEARELAKV 156 >2o08_A BH1327 protein; NP_242193.1, hypothetical protein, structural genomics, joint center for structural genomics, JCSG, PSI-2; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} (A:1-134) Length = 134 Score = 57.8 bits (139), Expect = 2e-09 Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 4/113 (3%) Query: 64 FHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQE 123 +R HTI V + A LA+ D+ E A+ HD+ + +++E Sbjct: 11 VKPHLTEHR--YQHTIGVXETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEXRTLIRE 68 Query: 124 LLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDL 176 LS + + Y + + L+ + H L Sbjct: 69 KLSQQDILFY--GDELLHAPCGAYYVREEVGIEDEDVLQAIRFHTTGRPNXSL 119 >3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} (A:) Length = 209 Score = 57.2 bits (137), Expect = 4e-09 Identities = 13/131 (9%), Positives = 39/131 (29%), Gaps = 9/131 (6%) Query: 43 DRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAI 102 + ++ + + + H V ++++ + D +E Sbjct: 3 KEEIILSAKNWXHSHFEN--------ETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELA 54 Query: 103 ALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTEL-ECSYADFDGINLTWETL 161 AL HD+ ++ + L++ + + + + + + T+ Sbjct: 55 ALFHDYSDIKLTTDEQEATKTLINWXETKEIPSELIKKIIRIIQSVSFKKGKNTFKALTI 114 Query: 162 EGLIGHNGPIL 172 E I + L Sbjct: 115 EEKIVQDADRL 125 >3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} (A:1-135) Length = 135 Score = 51.2 bits (122), Expect = 2e-07 Identities = 22/149 (14%), Positives = 32/149 (21%), Gaps = 30/149 (20%) Query: 66 RQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELL 125 R H++ V A LA D + L HD G ++ Sbjct: 14 NNLGEKR--YKHSLGVXDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIEICTNEG 71 Query: 126 SSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRI 185 G D + A + L + H Sbjct: 72 YELGDEDIRNSYL-LHGLAGRILAKKVIGIDDEDVLNAIEFHTTGRPNX----------- 119 Query: 186 FSDYYHIHGLSLANFASLEGQVAAIADDI 214 SL ++ IAD I Sbjct: 120 ----------------SLLEKIIYIADYI 132 >3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} (A:1-131) Length = 131 Score = 49.8 bits (118), Expect = 6e-07 Identities = 13/119 (10%), Positives = 28/119 (23%), Gaps = 14/119 (11%) Query: 54 RRLKDKTQVFFHRQRDHYR--TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHP 111 + + + + + H + H V A+ LA +D ++ HD Sbjct: 4 QHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63 Query: 112 PFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGP 170 H +I + L + + H+ Sbjct: 64 AKNHPQRQ------------RSSILAAEETRRLLREEFEQFPAEKIEAVCHAIAAHSFS 110 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688) Length = 258 Score = 30.6 bits (69), Expect = 0.35 Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 14/83 (16%) Query: 228 GLLTVDMLKEISFLEKHIASLHDL-Y--GHLDDKR------LVHEL--VRRQITAMV-ED 275 G+LT +E K+ + ++ Y L + + +EL ++ + + ED Sbjct: 5 GILTT--AREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSED 62 Query: 276 VITVSQKRIAHLKPHAIHDIRSA 298 +R + A +R+A Sbjct: 63 QNEFLLERTREIHNEAESQLRAA 85 Score = 28.7 bits (64), Expect = 1.2 Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 12/68 (17%) Query: 70 HYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALA-----HDFGHPPFGHVGEDVL--- 121 YR R + +QI + L E L ++F + + Sbjct: 27 KYRKRQL-VTREAQIKDWVENEL---EALKLEAEEIPSEDQNEFLLERTREIHNEAESQL 82 Query: 122 QELLSSYG 129 + +G Sbjct: 83 RAAQQQWG 90 Score = 26.4 bits (58), Expect = 7.0 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 13/56 (23%) Query: 37 RSEFQRDRDRMIHTTAFRRLKDKTQVF---FHRQRDHYRTRLMHTIEVSQIARSLA 89 ++EF +R R IH A +L+ Q + F+++ ++ + +LA Sbjct: 63 QNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPR----------IAPLRGALA 108 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 30.5 bits (68), Expect = 0.42 Identities = 16/139 (11%), Positives = 32/139 (23%), Gaps = 29/139 (20%) Query: 236 KEISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHL-------- 287 K +F L L + + ++ V + + Sbjct: 171 KTAAFA------LTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI 224 Query: 288 ------KPHAIHDIRSA-GYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANV 340 I ++D L ++IK ++ +Q + Sbjct: 225 KDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRI 284 Query: 341 IRN--------LFSAYMSD 351 LFSA S+ Sbjct: 285 KHLLPRNTQIVLFSATFSE 303 >3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, structural genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} (A:1-23,A:106-281) Length = 199 Score = 29.9 bits (66), Expect = 0.57 Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 9/67 (13%) Query: 53 FRRLKDKTQVF--FHRQRDHYRTRLMHTIEVSQIARSLARAL-------RIDEDLVEAIA 103 ++LKD + + +I+V+ A SL + ++ D + Sbjct: 13 LKKLKDDALILSTNEXVWEVXDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAG 72 Query: 104 LAHDFGH 110 L H+ G Sbjct: 73 LVHNIGA 79 >2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide bond forming enzyme, metal dependent, NEW fold, GDP binding MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} (A:44-126,A:238-254) Length = 100 Score = 28.2 bits (63), Expect = 2.2 Identities = 7/31 (22%), Positives = 15/31 (48%) Query: 72 RTRLMHTIEVSQIARSLARALRIDEDLVEAI 102 R R + S+ A+ +A + + V+A+ Sbjct: 9 RIRRLEEFNPSERAKEIAARIGKPAEFVQAV 39 >3c1q_A General secretion pathway protein F; type 2 secretion system, T2SS, T4PB, inner membrane, membrane, transmembrane, transport protein; HET: MSE PE5; 1.70A {Vibrio cholerae} PDB: 2vmb_A* 2vma_A* (A:) Length = 123 Score = 27.9 bits (62), Expect = 2.5 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 72 RTRLMHTIEVSQIARSLARALRIDEDLVEAI-ALAHDFGHPPFGHVGEDVLQEL 124 R + T +++ I R LA ++ L E + A+A P V ++ Sbjct: 5 FKRGISTPDLALITRQLATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKV 58 >3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, adaptor protein, cytoplasm, alternative splicing, ATP- binding, cell cycle; HET: ATP CIT; 2.35A {Homo sapiens} (B:108-389) Length = 282 Score = 27.5 bits (59), Expect = 3.3 Identities = 11/119 (9%), Positives = 32/119 (26%), Gaps = 2/119 (1%) Query: 246 ASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAH--LKPHAIHDIRSAGYRII 303 S DL + + + +++ + + H +K I + Sbjct: 4 GSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLS 63 Query: 304 DFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLE 362 ++++ + +V ++ + + +NL G E Sbjct: 64 GLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACE 122 >2wpq_A Trimeric autotransporter adhesin fragment; coiled coil, hydrophobic core, ION coordination, protein export, TAA, membrane protein; 1.85A {Salmonella enterica subsp} (A:) Length = 99 Score = 27.5 bits (61), Expect = 3.3 Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 16/89 (17%) Query: 201 ASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLK-EISFLEKHIASLHDLYGHLDDKR 259 A ++ + + + + DI +++ +I+ +I +L D ++D Sbjct: 23 ARIKKLIFDTNEKVDQNTADITTNTN----SINQNTTDIATNTTNINNLSDSMKQIED-- 76 Query: 260 LVHELVRRQITAMVEDVITVSQKRIAHLK 288 +I ++ + + IA +K Sbjct: 77 --------KIEEILSKIYHIEN-EIARIK 96 >2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} (X:1-173) Length = 173 Score = 27.1 bits (60), Expect = 4.2 Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%) Query: 289 PHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLF 345 P H + Y + F++E+TL E+ +M+ K + + +F Sbjct: 78 PEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANL-----LLTRSFSGCLSVVF 129 >2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* (A:96-323) Length = 228 Score = 26.8 bits (57), Expect = 4.5 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 2/121 (1%) Query: 249 HDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAH--LKPHAIHDIRSAGYRIIDFS 306 DL+ + + L + ++ I + V + + H LKP + + ++ DF Sbjct: 3 TDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFG 62 Query: 307 DEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERD 366 + + + L SA S + C + E Sbjct: 63 LARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELF 122 Query: 367 M 367 + Sbjct: 123 L 123 >1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra attenuata} (A:1-83,A:243-315) Length = 156 Score = 26.1 bits (57), Expect = 7.5 Identities = 8/111 (7%), Positives = 31/111 (27%), Gaps = 4/111 (3%) Query: 25 LGRMYPEKRSLTRSEFQR----DRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIE 80 L +R ++++ + + + + + ++ RL H ++ Sbjct: 39 LATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRNRFAYFAERLHHAMK 98 Query: 81 VSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGF 131 + + + ++ + F + E + + Y Sbjct: 99 GLGTSDKTLIRILVSRSEIDLANIKETFQAMYGKSLYEFIADDCSGDYKDL 149 >2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Agrobacterium tumefaciens str} (A:27-207) Length = 181 Score = 26.2 bits (57), Expect = 8.1 Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 3/63 (4%) Query: 55 RLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFG 114 L + + DH T H + V I + +AL HD G Sbjct: 11 GLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMC---PGATPDEMQMALLHDAPEYVIG 67 Query: 115 HVG 117 + Sbjct: 68 DMI 70 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.325 0.140 0.415 Gapped Lambda K H 0.267 0.0569 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 3,349,431 Number of extensions: 160304 Number of successful extensions: 646 Number of sequences better than 10.0: 1 Number of HSP's gapped: 610 Number of HSP's successfully gapped: 58 Length of query: 410 Length of database: 4,956,049 Length adjustment: 91 Effective length of query: 319 Effective length of database: 1,879,794 Effective search space: 599654286 Effective search space used: 599654286 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 56 (25.7 bits)