RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate
triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus
str. psy62]
(410 letters)
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative;
dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD
superfamily; 2.20A {Thermus thermophilus HB8} (A:27-308)
Length = 282
Score = 158 bits (400), Expect = 1e-39
Identities = 122/300 (40%), Positives = 166/300 (55%), Gaps = 19/300 (6%)
Query: 26 GRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIA 85
GR +PE SL R+ +Q+DRDR++HTTAFRRL+ KTQV D+YRTRL HT+EV+Q++
Sbjct: 2 GRAHPEPESLYRTPYQKDRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVS 61
Query: 86 RSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145
RS+ARAL ++EDL EAIAL+HD GHPPFGH GE VL L +GGF+HN Q+ RI+T LE
Sbjct: 62 RSIARALGLNEDLTEAIALSHDLGHPPFGHTGEHVLNALXQDHGGFEHNAQALRILTHLE 121
Query: 146 CSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEG 205
Y F G+NLT+E LEG+ H Y +LE
Sbjct: 122 VRYPGFRGLNLTYEVLEGIATHEAA------------------YSPGFKPLYEGQGTLEA 163
Query: 206 QVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLDDKRLVHELV 265
QV ++D IAY AHD+DDG RAGLL + LKE+ L+ L + LV
Sbjct: 164 QVVDLSDAIAYAAHDLDDGFRAGLLHPEELKEVELLQALALEEGLDLLRLPELDR-RVLV 222
Query: 266 RRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVY 325
R+ + + I + +R+ + +R R+ +E K +K+ L + Y
Sbjct: 223 RQLLGYFITAAIEATHRRVEEAGVQSAEAVRRHPSRLAALGEEAEKALKALKAFLXERFY 282
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural
genomics, PSI-2, protein structure initiative; HET: DGT
DTP; 2.40A {Enterococcus faecalis V583} PDB: 2o6i_A*
(A:1-247)
Length = 247
Score = 151 bits (381), Expect = 2e-37
Identities = 30/246 (12%), Positives = 63/246 (25%), Gaps = 28/246 (11%)
Query: 1 MIVVRKLGFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKT 60
+ L F + + +++ + + +I++ +RL+
Sbjct: 12 DLGTENLYFQSNAMTIPYKEQRLPIEKVFRDPVHNYIHVQHQVILDLINSAEVQRLRRIK 71
Query: 61 QVFF--HRQRDHYRTRLMHTIEVSQIARSLARALR---------------IDEDLVEAIA 103
Q+ +R H++ V +I R + + + + A
Sbjct: 72 QLGTSSFTFHGAEHSRFSHSLGVYEITRRICEIFQRNYSVERLGENGWNDDERLITLCAA 131
Query: 104 LAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEG 163
L HD GH P+ H E + + + L + +
Sbjct: 132 LLHDVGHGPYSHTFEHIFDTNHEAITVQIITSPETEVYQILN-----RVSADFPEKVASV 186
Query: 164 LIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDD 223
+ + +I DY L A F E I
Sbjct: 187 ITKQYPNPQVVQMISSQIDADRM-DYL----LRDAYFTGTEYGTFD-LTRILRVIRPYKG 240
Query: 224 GVRAGL 229
G+ +
Sbjct: 241 GIAFAM 246
>2hek_A Hypothetical protein; predominantly alpha helical protein
with GDP binding site and active site being FAR from
EACH other, structural genomics; HET: GDP; 2.00A
{Aquifex aeolicus} (A:1-221)
Length = 221
Score = 142 bits (359), Expect = 6e-35
Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 10/209 (4%)
Query: 37 RSEFQRDRDRMIHTTAFRRLKDKTQVF--FHRQRDHYRTRLMHTIEVSQIARSLARALRI 94
R+I + F+RL+ Q+ + TR H++ V I + +L++
Sbjct: 12 FVRVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKV 71
Query: 95 D-EDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDG 153
++LV+ L HD GHPPF H E +L S + I+ I L+ Y+ D
Sbjct: 72 KEKELVKLAGLLHDLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDI 131
Query: 154 INLTWETLEGLIGHNGPILPQDLDKPRIIPR----IFSDYYHIHGLSLANFASLEGQVAA 209
L TL +L + + R Y+ ++ L +
Sbjct: 132 ERLVRITLGKPEDEEEKLLSEIITGEFGSDRMDYLRRDAYFCGVSYGFFDYDRLISTLRV 191
Query: 210 IADDIAY---DAHDIDDGVRAGLLTVDML 235
+ + +++ + + +
Sbjct: 192 YENKVVVDESGLRALENFLISRYFMYVQV 220
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC,
target 10395N, PSI-2, protein structure initiative;
1.95A {Leeuwenhoekiella blandensis MED217}
(A:1-119,A:180-360)
Length = 300
Score = 125 bits (315), Expect = 1e-29
Identities = 63/347 (18%), Positives = 108/347 (31%), Gaps = 92/347 (26%)
Query: 17 YAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLM 76
+ + ++ TR F+ D DR+I + FR L+DKTQV + D TRL
Sbjct: 8 LSLKRQGDTAKRLRIEQDDTRLGFEVDYDRIIFSAPFRSLQDKTQVIPLSKTDFVHTRLT 67
Query: 77 HTIEVSQIARSLARALRI-------------------DEDLVEAIALAHDFGHPPFGHVG 117
H++EVS + RSL R + +V A ALAHD G
Sbjct: 68 HSLEVSVVGRSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIG-------- 119
Query: 118 EDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLD 177
L++ TL + + LP
Sbjct: 120 -------------------------------------RLSYATLGAFMKYPKESLPHKPS 142
Query: 178 KPRIIPR--IFSDYYHI--------------HGLSLANFASLEGQVAAIADDIAYDAHDI 221
+ F + ++ + ADDI Y D
Sbjct: 143 DHIADKKYGFFQSERALFEDVAQELGLLKRSTTDDVSWSRHPLAYLVEAADDICYTIIDF 202
Query: 222 DDGVRAGLLTVDMLKEI-SFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVS 280
+DG+ GL+ + E L + + V L I ++ + +
Sbjct: 203 EDGINLGLIPEEYALEYMVKLVGQTIDRNKYNALQETSDRVSYLRALAIGTLINESVDTF 262
Query: 281 QKRIAHLKPHAIHDIRSAGYR--IIDFSDEMTLVDKEIKSMLVKYVY 325
K +I + + +ID S+ + +I ++ ++ +Y
Sbjct: 263 MKY--------EEEILAGTFDQSLIDKSNYQAQI-TDIINLSIERIY 300
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics,
joint center for structural genomics, JCSG; HET: MSE
ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
(A:1-190)
Length = 190
Score = 119 bits (298), Expect = 9e-28
Identities = 26/213 (12%), Positives = 53/213 (24%), Gaps = 37/213 (17%)
Query: 24 SLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFF--HRQRDHYRTRLMHTIEV 81
++ + + + ++ +RL QV TR H++
Sbjct: 4 YERKIINDPVFGFINIPKGLLYDIVRHPLLQRLTRIKQVGLSSVVYPGAQHTRFQHSLGA 63
Query: 82 SQIARSLARALR--------IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDH 133
+ L + + V+A L HD GH PF HV ED + + G H
Sbjct: 64 FYLXSEAITQLTSKGNFIFDSEAEAVQAAILLHDIGHGPFSHVLEDTIVQ------GVSH 117
Query: 134 NIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIH 193
S + ++L + + +
Sbjct: 118 EEISLXLXERXNKEXNGQ--LSLAIQIFKDEYPKRFLH-------------------QLV 156
Query: 194 GLSLANFASLEGQVAAIADDIAYDAHDIDDGVR 226
L + + + ++
Sbjct: 157 SGQLDXDRLDYLRRDSFYTGVTEGNIGSARIIK 189
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural
genomics, PSI-2, protein structure initiative; 2.80A
{Lactobacillus plantarum WCFS1} (A:)
Length = 231
Score = 105 bits (261), Expect = 2e-23
Identities = 34/224 (15%), Positives = 61/224 (27%), Gaps = 8/224 (3%)
Query: 44 RDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIA 103
D I T ++ DH H V+++AR LA+ + +L A A
Sbjct: 3 GDPXITETQLTAIQTYALQKLAH--DHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAA 60
Query: 104 LAHDFGHPPFGHVGEDVLQELLSSYGGFDHNI-QSFRIVTELECSYADFDGINLTWETLE 162
HD Q+L+ + I ++ +LE
Sbjct: 61 WLHDVIDDKLXANPAKAHQDLIVQLNAQNVTADDQTAIFAIIDHXSFSKSFNGPQKLSLE 120
Query: 163 GLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDID 222
G + + LD I + YY H ++ + + +
Sbjct: 121 GQVVQDADR----LDAIGAIGIARALYYSGHVGEKIYDPAIAPREHXTREQYRHQPGTAI 176
Query: 223 DGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLDDKRLVHELVR 266
+ L + L K +A+ H + E
Sbjct: 177 NHFYEKLFKLAALXNTD-TAKALAAHRTAVXHEFVDQFKAEWTA 219
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase;
deoxyguanosinetriphosphate triphsphohydrolase; 2.35A
{Pseudomonas syringae PV} (A:1-113,A:229-354)
Length = 239
Score = 97.7 bits (243), Expect = 2e-21
Identities = 38/113 (33%), Positives = 51/113 (45%), Gaps = 14/113 (12%)
Query: 17 YAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLM 76
+ LG+ L RS F +D DR+I + AFRRL KTQV DH TRL
Sbjct: 6 QTLLNRERLGKTLHSPEELGRSPFHKDHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLT 65
Query: 77 HTIEVSQIARSLARALRI--------------DEDLVEAIALAHDFGHPPFGH 115
H++EVS + RSL + +V++ LAHD G+ H
Sbjct: 66 HSLEVSCVGRSLGXRVGETLRAALPDWCDPSDLGXVVQSACLAHDIGNRWARH 118
Score = 87.7 bits (217), Expect = 3e-18
Identities = 19/136 (13%), Positives = 39/136 (28%), Gaps = 8/136 (5%)
Query: 193 HGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEI---SFLEKHIASLH 249
H + + ADDI Y D++DG+ LL ++ + + +
Sbjct: 109 HDIGNRWARHPLVYLXEAADDICYALIDLEDGLEXDLLDYAEVESLLLGLVGDDLPETYR 168
Query: 250 DLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEM 309
L +R + L + I + ++ A+ G +
Sbjct: 169 QLGPGDSRRRKLAILRGKAIEHLTNAAARAFVEQQD-----ALLAGTLPGDLVEHXHGPA 223
Query: 310 TLVDKEIKSMLVKYVY 325
K K ++
Sbjct: 224 KRCVLNAKDXARKKIF 239
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase;
deoxyguanosinetriphosphate triphsphohydrolase; 2.35A
{Pseudomonas syringae PV} (A:114-228,A:355-451)
Length = 212
Score = 86.5 bits (214), Expect = 6e-18
Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 24/122 (19%)
Query: 111 PPFGHVGEDVLQELLSSY-----------------GGFDHNIQSFRIVTELECSYADFDG 153
PPFGH GED ++ + F+ N Q FR++T+LE D G
Sbjct: 1 PPFGHSGEDAIRNWFNQAAGRGWLDAXSETERNDFLNFEGNAQGFRVLTQLEYHQFDG-G 59
Query: 154 INLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADD 213
LT+ TL + + D F Y L + G++ +
Sbjct: 60 TRLTYATLGTYLKYPWTARH--ADSLGYKKHKFGCYQ----SELPILEQIAGKLGLPQLE 113
Query: 214 IA 215
Sbjct: 114 EQ 115
Score = 36.4 bits (84), Expect = 0.007
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 14/86 (16%)
Query: 326 RHPSIMTCCNQIANVIRNLFSAYMS------DPRKMRGCNQLEYER--------DMTDSI 371
+ + L +A+ R ++ +
Sbjct: 116 QDKRKTLHEIGAYTTLEILLNAFCGAAVEQFGGRTPSFKHRRILDLLGNSAPDPKAPLHA 175
Query: 372 KARHVGDYLAGMTDSYAIREHHILFG 397
D++AG TDSYA G
Sbjct: 176 SFLRXIDFIAGXTDSYASEXAREXTG 201
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.45A {Uncultured
thermotogales bacterium} (A:)
Length = 220
Score = 73.8 bits (180), Expect = 4e-14
Identities = 24/227 (10%), Positives = 47/227 (20%), Gaps = 20/227 (8%)
Query: 53 FRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPP 112
R + + + + D + HT V + A +A + D AL HD P
Sbjct: 14 LREILNIVR-EAFKDYDDPAHDISHTFRVXENASEIASREKCDLQKAIIAALLHDIKRPH 72
Query: 113 FGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPIL 172
G D + G E + + H
Sbjct: 73 EALTGVDHAESGAEYASGLLPTXGFDISF---------------VAEVSKAIRSHRYSGG 117
Query: 173 PQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTV 232
I + I A + + + +G
Sbjct: 118 LTPTSLTGKILQDADRLDAIG----AVAIARVFSYSGKTGTPLHSLQFSPRSSYSGNSRS 173
Query: 233 DMLKEISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITV 279
+ + K + V + + + +
Sbjct: 174 SINHFHEKILKIRPETFWTETARKXAEDRYSFVVEFVQRFLAEWGQI 220
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative;
dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD
superfamily; 2.20A {Thermus thermophilus HB8}
(A:309-376)
Length = 68
Score = 70.5 bits (173), Expect = 4e-13
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 326 RHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHVGDYLAGMTD 385
RHP ++ + V+ LF+AY P + E + + + R V DY+AG TD
Sbjct: 1 RHPEVLRERRKAEAVLEGLFAAYTRYPELLPR----EVQAKIPEEGLERAVCDYIAGXTD 56
Query: 386 SYAIREHHILF 396
+A+ + L
Sbjct: 57 RFALEAYRRLS 67
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics,
PSI-2, protein structure initiative; 2.00A
{Staphylococcus epidermidis atcc 12228} (A:1-128)
Length = 128
Score = 66.7 bits (162), Expect = 5e-12
Identities = 17/125 (13%), Positives = 37/125 (29%), Gaps = 9/125 (7%)
Query: 42 RDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRI-DEDLVE 100
R ++ + + + D + H V A +A+ I D ++E
Sbjct: 2 NSRXKIKKAYEYXKSFHQ--------HDTTGHDIAHVERVYNNACYIAKRENITDTLVIE 53
Query: 101 AIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWET 160
+L HD Q + S +++ ++ N +
Sbjct: 54 LSSLLHDTVDSKLTDEILAYDQLKQFLSTLDLSSEISQQVLYIIKHXSYRAGKNNHVKLS 113
Query: 161 LEGLI 165
++G I
Sbjct: 114 IDGEI 118
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC,
target 10395N, PSI-2, protein structure initiative;
1.95A {Leeuwenhoekiella blandensis MED217}
(A:120-179,A:361-444)
Length = 144
Score = 66.0 bits (161), Expect = 9e-12
Identities = 8/80 (10%), Positives = 20/80 (25%), Gaps = 8/80 (10%)
Query: 326 RHPSIMTCCNQIANVIRNLFSAYMSDPRKMR--------GCNQLEYERDMTDSIKARHVG 377
++ ++ L A + + +
Sbjct: 61 NSREVIEKEIAGYEILSTLLEARCRALDNNDTHYNQLIQQLLAPNDHSEKSLYENLIQIC 120
Query: 378 DYLAGMTDSYAIREHHILFG 397
++ MTD A+R + + G
Sbjct: 121 AEVSTMTDGKALRNYKKIKG 140
Score = 51.4 bits (123), Expect = 2e-07
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 19/62 (30%)
Query: 111 PPFGHVGEDVLQELLSSY-----------------GGFDHNIQSFRIVTELECSYADFDG 153
PPFGH GE + E + F+ N F+++++ + G
Sbjct: 2 PPFGHSGEKAIGEFFKNGYGKRYKDSLTAKEYQDLIKFEGNANGFKVLSQSK--PGAQGG 59
Query: 154 IN 155
+N
Sbjct: 60 LN 61
>3dto_A BH2835 protein; all alpha-helical protein, structural
genomics, PSI-2, protein structure initiative; 3.30A
{Bacillus halodurans} (A:1-126)
Length = 126
Score = 65.9 bits (160), Expect = 9e-12
Identities = 17/114 (14%), Positives = 38/114 (33%), Gaps = 2/114 (1%)
Query: 54 RRLKDKTQVFFHRQRDHYR--TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHP 111
+ + + + +Q H V+ A+++ ++D +V+ AL HD
Sbjct: 4 QAILQSAEAWVKKQLXDEYSGHDWYHIRRVTLXAKAIGEQEKVDVFVVQIAALFHDLIDD 63
Query: 112 PFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLI 165
E Q+L+ Q ++ + + G + T E +
Sbjct: 64 KLVDDPETAKQQLIDWXEAAGVPSQKIDHTXDIINTISFKGGHGQSLATREAXV 117
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein
with unknown function, structural genomics; 1.90A
{Geobacter sulfurreducens} (A:1-25,A:111-305)
Length = 220
Score = 63.3 bits (153), Expect = 5e-11
Identities = 27/223 (12%), Positives = 65/223 (29%), Gaps = 38/223 (17%)
Query: 67 QRDHYR--TRLMHTIEVSQIARSLARALRI-DEDLVEAIALAHDFG----HPPFGHVGED 119
++ T H++ V++IA+ +A + V L HD G + G
Sbjct: 25 EKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQ 84
Query: 120 VLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKP 179
V+ + F + + E +A +L + ++ H+
Sbjct: 85 VVTLVDEEKITFGQAEERLFGTSHCEVGFALAKRWSLNEFICDTILYHHDI--------- 135
Query: 180 RIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEIS 239
++ + A AD+ + G VD ++ +
Sbjct: 136 ---------------EAVPYKQAAIVAXVAFADEYC----TLRRLGFEGHKPVDSVRTLL 176
Query: 240 FLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQK 282
S + L +L+ ++ + + ++ +
Sbjct: 177 ENH---PSWGVIRRSLGGSDFDEKLIVAELDSSIVEIRAAVDE 216
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural
genomics, PSI-2, protein structure initiative; 2.90A
{Bacillus thuringiensis serovarkonkukian} (A:1-126)
Length = 126
Score = 61.7 bits (149), Expect = 2e-10
Identities = 19/107 (17%), Positives = 37/107 (34%)
Query: 59 KTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGE 118
T V ++D H V + A SL+ + ++E AL HD E
Sbjct: 11 ITFVKHILEKDASGHDWYHIRRVHKXAISLSEQEGGNRFIIEXAALLHDVADEKLNESEE 70
Query: 119 DVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLI 165
+++ + + V + + + G E++EG +
Sbjct: 71 AGXKKVSDWLEELHVEEEESKHVLHIIANXSYKGGHGGKVESIEGKL 117
>2ogi_A Hypothetical protein SAG1661; NP_688652.1, conserved
hypothetical protein TIGR00488, structural genomics;
HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup
V} (A:1-159)
Length = 159
Score = 59.4 bits (143), Expect = 9e-10
Identities = 19/159 (11%), Positives = 35/159 (22%), Gaps = 30/159 (18%)
Query: 74 RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDH 133
R H + V + A LA D++ AL HD+ ++ +
Sbjct: 27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKELSDDEFLRLIDKYQPDPDLKKW 86
Query: 134 NIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIH 193
+ + D + L + H
Sbjct: 87 GNNIWH--GLVGIYKIQEDLAIKDQDILAAIAKHTVGSAQ-------------------- 124
Query: 194 GLSLANFASLEGQVAAIADDI-AYDAHDIDDGVRAGLLT 231
S ++ +AD I + R
Sbjct: 125 -------XSTLDKIVYVADYIEHNRDFPGVEEARELAKV 156
>2o08_A BH1327 protein; NP_242193.1, hypothetical protein,
structural genomics, joint center for structural
genomics, JCSG, PSI-2; HET: UNL PG4 DGI; 1.90A {Bacillus
halodurans} (A:1-134)
Length = 134
Score = 57.8 bits (139), Expect = 2e-09
Identities = 20/113 (17%), Positives = 36/113 (31%), Gaps = 4/113 (3%)
Query: 64 FHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQE 123
+R HTI V + A LA+ D+ E A+ HD+ + +++E
Sbjct: 11 VKPHLTEHR--YQHTIGVXETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEXRTLIRE 68
Query: 124 LLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDL 176
LS + + Y + + L+ + H L
Sbjct: 69 KLSQQDILFY--GDELLHAPCGAYYVREEVGIEDEDVLQAIRFHTTGRPNXSL 119
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics,
PSI-2, protein structure initiative; 3.00A {Listeria
innocua CLIP11262} (A:)
Length = 209
Score = 57.2 bits (137), Expect = 4e-09
Identities = 13/131 (9%), Positives = 39/131 (29%), Gaps = 9/131 (6%)
Query: 43 DRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAI 102
+ ++ + + + H V ++++ + D +E
Sbjct: 3 KEEIILSAKNWXHSHFEN--------ETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELA 54
Query: 103 ALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTEL-ECSYADFDGINLTWETL 161
AL HD+ ++ + L++ + + + + + + T+
Sbjct: 55 ALFHDYSDIKLTTDEQEATKTLINWXETKEIPSELIKKIIRIIQSVSFKKGKNTFKALTI 114
Query: 162 EGLIGHNGPIL 172
E I + L
Sbjct: 115 EEKIVQDADRL 125
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
(A:1-135)
Length = 135
Score = 51.2 bits (122), Expect = 2e-07
Identities = 22/149 (14%), Positives = 32/149 (21%), Gaps = 30/149 (20%)
Query: 66 RQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELL 125
R H++ V A LA D + L HD G ++
Sbjct: 14 NNLGEKR--YKHSLGVXDTAVRLAGIYNEDTEKARIAGLVHDCAKKLPGEKIIEICTNEG 71
Query: 126 SSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRI 185
G D + A + L + H
Sbjct: 72 YELGDEDIRNSYL-LHGLAGRILAKKVIGIDDEDVLNAIEFHTTGRPNX----------- 119
Query: 186 FSDYYHIHGLSLANFASLEGQVAAIADDI 214
SL ++ IAD I
Sbjct: 120 ----------------SLLEKIIYIADYI 132
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein,
structural genomics, PSI-2, protein structure
initiative; 3.30A {Escherichia coli k-12} (A:1-131)
Length = 131
Score = 49.8 bits (118), Expect = 6e-07
Identities = 13/119 (10%), Positives = 28/119 (23%), Gaps = 14/119 (11%)
Query: 54 RRLKDKTQVFFHRQRDHYR--TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHP 111
+ + + + + H + H V A+ LA +D ++ HD
Sbjct: 4 QHWQAQFENWLKNHHQHQDAAHDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSL 63
Query: 112 PFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGP 170
H +I + L + + H+
Sbjct: 64 AKNHPQRQ------------RSSILAAEETRRLLREEFEQFPAEKIEAVCHAIAAHSFS 110
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
Length = 258
Score = 30.6 bits (69), Expect = 0.35
Identities = 15/83 (18%), Positives = 32/83 (38%), Gaps = 14/83 (16%)
Query: 228 GLLTVDMLKEISFLEKHIASLHDL-Y--GHLDDKR------LVHEL--VRRQITAMV-ED 275
G+LT +E K+ + ++ Y L + + +EL ++ + + ED
Sbjct: 5 GILTT--AREHHSSVKYASPNLNMKYRKRQLVTREAQIKDWVENELEALKLEAEEIPSED 62
Query: 276 VITVSQKRIAHLKPHAIHDIRSA 298
+R + A +R+A
Sbjct: 63 QNEFLLERTREIHNEAESQLRAA 85
Score = 28.7 bits (64), Expect = 1.2
Identities = 10/68 (14%), Positives = 19/68 (27%), Gaps = 12/68 (17%)
Query: 70 HYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALA-----HDFGHPPFGHVGEDVL--- 121
YR R + +QI + L E L ++F + +
Sbjct: 27 KYRKRQL-VTREAQIKDWVENEL---EALKLEAEEIPSEDQNEFLLERTREIHNEAESQL 82
Query: 122 QELLSSYG 129
+ +G
Sbjct: 83 RAAQQQWG 90
Score = 26.4 bits (58), Expect = 7.0
Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 13/56 (23%)
Query: 37 RSEFQRDRDRMIHTTAFRRLKDKTQVF---FHRQRDHYRTRLMHTIEVSQIARSLA 89
++EF +R R IH A +L+ Q + F+++ ++ + +LA
Sbjct: 63 QNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPR----------IAPLRGALA 108
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase,
translation termination, ATP-binding, cytoplasm,
hydrolase, membrane; 2.80A {Schizosaccharomyces pombe}
(A:1-326)
Length = 326
Score = 30.5 bits (68), Expect = 0.42
Identities = 16/139 (11%), Positives = 32/139 (23%), Gaps = 29/139 (20%)
Query: 236 KEISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHL-------- 287
K +F L L + + ++ V + +
Sbjct: 171 KTAAFA------LTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGI 224
Query: 288 ------KPHAIHDIRSA-GYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANV 340
I ++D L ++IK ++ +Q +
Sbjct: 225 KDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRI 284
Query: 341 IRN--------LFSAYMSD 351
LFSA S+
Sbjct: 285 KHLLPRNTQIVLFSATFSE 303
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1,
structural genomics, joint center for structural
genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
(A:1-23,A:106-281)
Length = 199
Score = 29.9 bits (66), Expect = 0.57
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 53 FRRLKDKTQVF--FHRQRDHYRTRLMHTIEVSQIARSLARAL-------RIDEDLVEAIA 103
++LKD + + +I+V+ A SL + ++ D +
Sbjct: 13 LKKLKDDALILSTNEXVWEVXDEVWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAG 72
Query: 104 LAHDFGH 110
L H+ G
Sbjct: 73 LVHNIGA 79
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis,
amide bond forming enzyme, metal dependent, NEW fold,
GDP binding MCSG; HET: GDP; 1.35A {Archaeoglobus
fulgidus dsm 4304} (A:44-126,A:238-254)
Length = 100
Score = 28.2 bits (63), Expect = 2.2
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 72 RTRLMHTIEVSQIARSLARALRIDEDLVEAI 102
R R + S+ A+ +A + + V+A+
Sbjct: 9 RIRRLEEFNPSERAKEIAARIGKPAEFVQAV 39
>3c1q_A General secretion pathway protein F; type 2 secretion
system, T2SS, T4PB, inner membrane, membrane,
transmembrane, transport protein; HET: MSE PE5; 1.70A
{Vibrio cholerae} PDB: 2vmb_A* 2vma_A* (A:)
Length = 123
Score = 27.9 bits (62), Expect = 2.5
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 72 RTRLMHTIEVSQIARSLARALRIDEDLVEAI-ALAHDFGHPPFGHVGEDVLQEL 124
R + T +++ I R LA ++ L E + A+A P V ++
Sbjct: 5 FKRGISTPDLALITRQLATLVQSGXPLEECLRAVAEQSEKPRIRTXLVAVRAKV 58
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat
protein, adaptor protein, cytoplasm, alternative
splicing, ATP- binding, cell cycle; HET: ATP CIT; 2.35A
{Homo sapiens} (B:108-389)
Length = 282
Score = 27.5 bits (59), Expect = 3.3
Identities = 11/119 (9%), Positives = 32/119 (26%), Gaps = 2/119 (1%)
Query: 246 ASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAH--LKPHAIHDIRSAGYRII 303
S DL + + + +++ + + H +K I +
Sbjct: 4 GSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLS 63
Query: 304 DFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLE 362
++++ + +V ++ + + +NL G E
Sbjct: 64 GLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACE 122
>2wpq_A Trimeric autotransporter adhesin fragment; coiled coil,
hydrophobic core, ION coordination, protein export, TAA,
membrane protein; 1.85A {Salmonella enterica subsp} (A:)
Length = 99
Score = 27.5 bits (61), Expect = 3.3
Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 16/89 (17%)
Query: 201 ASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLK-EISFLEKHIASLHDLYGHLDDKR 259
A ++ + + + + DI +++ +I+ +I +L D ++D
Sbjct: 23 ARIKKLIFDTNEKVDQNTADITTNTN----SINQNTTDIATNTTNINNLSDSMKQIED-- 76
Query: 260 LVHELVRRQITAMVEDVITVSQKRIAHLK 288
+I ++ + + IA +K
Sbjct: 77 --------KIEEILSKIYHIEN-EIARIK 96
>2a2f_X Exocyst complex component SEC15; all helical structure,
protein transport; 2.50A {Drosophila melanogaster}
(X:1-173)
Length = 173
Score = 27.1 bits (60), Expect = 4.2
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 289 PHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLF 345
P H + Y + F++E+TL E+ +M+ K + + +F
Sbjct: 78 PEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANL-----LLTRSFSGCLSVVF 129
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3;
transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae}
PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
(A:96-323)
Length = 228
Score = 26.8 bits (57), Expect = 4.5
Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 2/121 (1%)
Query: 249 HDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAH--LKPHAIHDIRSAGYRIIDFS 306
DL+ + + L + ++ I + V + + H LKP + + ++ DF
Sbjct: 3 TDLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFG 62
Query: 307 DEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERD 366
+ + + L SA S + C + E
Sbjct: 63 LARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELF 122
Query: 367 M 367
+
Sbjct: 123 L 123
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent
hexamerization switch E76, low calcium form; 1.93A
{Hydra attenuata} (A:1-83,A:243-315)
Length = 156
Score = 26.1 bits (57), Expect = 7.5
Identities = 8/111 (7%), Positives = 31/111 (27%), Gaps = 4/111 (3%)
Query: 25 LGRMYPEKRSLTRSEFQR----DRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIE 80
L +R ++++ + + + + + ++ RL H ++
Sbjct: 39 LATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRNRFAYFAERLHHAMK 98
Query: 81 VSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGF 131
+ + + ++ + F + E + + Y
Sbjct: 99 GLGTSDKTLIRILVSRSEIDLANIKETFQAMYGKSLYEFIADDCSGDYKDL 149
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; 1.50A {Agrobacterium
tumefaciens str} (A:27-207)
Length = 181
Score = 26.2 bits (57), Expect = 8.1
Identities = 12/63 (19%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 55 RLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFG 114
L + + DH T H + V I + +AL HD G
Sbjct: 11 GLARVARWNGQTRGDHAFTVAQHCLIVETIFCRMC---PGATPDEMQMALLHDAPEYVIG 67
Query: 115 HVG 117
+
Sbjct: 68 DMI 70
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.325 0.140 0.415
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,349,431
Number of extensions: 160304
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 58
Length of query: 410
Length of database: 4,956,049
Length adjustment: 91
Effective length of query: 319
Effective length of database: 1,879,794
Effective search space: 599654286
Effective search space used: 599654286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.7 bits)